CANDIDATE ID: 483

CANDIDATE ID: 483

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9952413e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    0.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7022 (torZ) (bisZ)
   Products of gene:
     - G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
     - CPLX-63 (trimethylamine N-oxide reductase III)
       Reactions:
        a menaquinol + trimethylamine N-oxide[periplasmic space]  ->  a menaquinone + trimethylamine[periplasmic space] + H2O[periplasmic space]
         In pathways
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)
         PWY0-1347 (NADH to trimethylamine N-oxide electron transfer)

- G6846 (ynfF) (b1588)
   Products of gene:
     - G6846-MONOMER (oxidoreductase subunit)
     - CPLX0-1601 (putative selenate reductase)
       Reactions:
        selenate + a reduced electron acceptor  ->  selenite + an oxidized electron acceptor + H2O

- G6845 (ynfE) (b1587)
   Products of gene:
     - G6845-MONOMER (oxidoreductase subunit)
     - CPLX0-1601 (putative selenate reductase)
       Reactions:
        selenate + a reduced electron acceptor  ->  selenite + an oxidized electron acceptor + H2O

- EG11814 (torA) (b0997)
   Products of gene:
     - TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
     - TMAOREDUCTI-CPLX (trimethylamine N-oxide reductase I)
       Reactions:
        a menaquinol + trimethylamine N-oxide[periplasmic space]  ->  a menaquinone + trimethylamine[periplasmic space] + H2O[periplasmic space]
         In pathways
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)
         PWY0-1347 (NADH to trimethylamine N-oxide electron transfer)

- EG10232 (dmsA) (b0894)
   Products of gene:
     - DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
     - DIMESULFREDUCT-CPLX (dimethyl sulfoxide reductase)
       Reactions:
        dimethyl sulfoxide[periplasmic space] + a menaquinol  ->  dimethylsulfide[periplasmic space] + a menaquinone + H2O[periplasmic space]
         In pathways
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1348 (NADH to dimethyl sulfoxide electron transfer)

- EG10124 (bisC) (bisC)
   Products of gene:
     - EG10124-MONOMER (biotin sulfoxide reductase)
       Reactions:
        L-methionine-(S)-S-oxide + a reduced thioredoxin  ->  L-methionine + an oxidized thioredoxin + H2O
        d-biotin d-sulfoxide + a reduced thioredoxin  =  biotin + an oxidized thioredoxin + H2O



Back to top


ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 126
Effective number of orgs (counting one per cluster within 468 clusters): 76

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
WSUC273121 ncbi Wolinella succinogenes DSM 17406
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE292459 ncbi Symbiobacterium thermophilum IAM 148636
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSP357808 ncbi Roseiflexus sp. RS-15
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RMET266264 ncbi Ralstonia metallidurans CH346
RDEN375451 ncbi Roseobacter denitrificans OCh 1145
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSP56811 Psychrobacter sp.6
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PACN267747 ncbi Propionibacterium acnes KPA1712026
NSP35761 Nocardioides sp.5
MTHE264732 ncbi Moorella thermoacetica ATCC 390736
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP266779 ncbi Chelativorans sp. BNC16
MSP189918 ncbi Mycobacterium sp. KMS6
MSP164757 ncbi Mycobacterium sp. JLS5
MSP164756 ncbi Mycobacterium sp. MCS6
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK6
MABS561007 ncbi Mycobacterium abscessus ATCC 199775
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HPYL85963 ncbi Helicobacter pylori J995
HPYL357544 ncbi Helicobacter pylori HPAG15
HPY ncbi Helicobacter pylori 266955
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHEP235279 ncbi Helicobacter hepaticus ATCC 514496
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DHAF138119 ncbi Desulfitobacterium hafniense Y516
CSP501479 Citreicella sp. SE456
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJEJ407148 ncbi Campylobacter jejuni jejuni 811166
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1766
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3816
CFET360106 ncbi Campylobacter fetus fetus 82-405
CCUR360105 ncbi Campylobacter curvus 525.926
CCON360104 ncbi Campylobacter concisus 138266
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii6
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AHYD196024 Aeromonas hydrophila dhakensis6
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABUT367737 ncbi Arcobacter butzleri RM40186


Names of the homologs of the genes in the group in each of these orgs
  G7022   G6846   G6845   EG11814   EG10232   EG10124   
YPSE349747 YPSIP31758_0974YPSIP31758_1344YPSIP31758_1344YPSIP31758_0974YPSIP31758_1344YPSIP31758_0974
YPSE273123 YPTB3043YPTB2688YPTB2688YPTB3043YPTB2688YPTB3043
YPES386656 YPDSF_1711YPDSF_3035YPDSF_3035YPDSF_1711YPDSF_3035YPDSF_1711
YPES377628 YPN_2998YPN_1417YPN_1417YPN_2998YPN_1417YPN_2998
YPES360102 YPA_0475YPA_2819YPA_2819YPA_0475YPA_2819YPA_0475
YPES349746 YPANGOLA_A3247YPANGOLA_A0922YPANGOLA_A0922YPANGOLA_A3247YPANGOLA_A0922YPANGOLA_A3247
YPES214092 YPO0794YPO3325YPO3325YPO0794YPO3325YPO0794
YPES187410 Y3182Y1519Y1519Y3182Y1519Y3182
YENT393305 YE3330YE1444YE1444YE1444YE1444YE3330
WSUC273121 WS1849WS1430WS1430WS1849WS1430WS1849
VVUL216895 VV1_2895VV1_2895VV1_2895VV1_2895VV1_2895VV1_2895
VVUL196600 VV1375VV1375VV1375VV1375VV1375VV1375
VPAR223926 VPA0128VP1447VP1447VPA0128VP1447VPA0128
VFIS312309 VFA0188VFA0082VFA0082VFA0299VFA0082VFA0990
VCHO345073 VC0395_A1538VC0395_A1538VC0395_A1538VC0395_A1538VC0395_A1538VC0395_A1538
VCHO VC1950VC1950VC1950VC1950VC1950VC1950
STYP99287 STM3822STM1499STM1499STM3822STM1499STM3822
STHE292459 STH2332STH2332STH2332STH713STH2332STH2332
SSP94122 SHEWANA3_1055SHEWANA3_1055SHEWANA3_1055SHEWANA3_1055SHEWANA3_1055SHEWANA3_1055
SSON300269 SSO_1248SSO_0895SSO_0895SSO_1248SSO_0895SSO_1248
SSED425104 SSED_3360SSED_2923SSED_2923SSED_3360SSED_2923SSED_3360
SPRO399741 SPRO_3233SPRO_1687SPRO_1687SPRO_3233SPRO_1687SPRO_3233
SPEA398579 SPEA_3343SPEA_2818SPEA_2818SPEA_3343SPEA_3861SPEA_3343
SONE211586 SO_1232SO_1429SO_1429SO_1232SO_1429SO_1232
SLOI323850 SHEW_2798SHEW_2798SHEW_2798SHEW_2798SHEW_2798SHEW_2798
SHIGELLA BISZDMSADMSABISZDMSABISZ
SHAL458817 SHAL_3415SHAL_2926SHAL_2926SHAL_3415SHAL_0404SHAL_3415
SFLE373384 SFV_1007SFV_1601SFV_1601SFV_1007SFV_1557SFV_1007
SFLE198214 AAN45036.1AAN43193.1AAN43193.1AAN45036.1AAN42486.1AAN45036.1
SENT454169 SEHA_C4154SEHA_C4651SEHA_C4651SEHA_C4154SEHA_C4651SEHA_C4154
SENT321314 SCH_3740SCH_4183SCH_4183SCH_3740SCH_4183SCH_3740
SENT295319 SPA3672SPA1834SPA1834SPA3672SPA1834SPA3672
SENT220341 STY4158STY1566STY1566STY4158STY1566STY4158
SENT209261 T3875T1970T1970T3875T1970T3875
SDYS300267 SDY_1171SDY_2367SDY_2367SDY_4352SDY_2367SDY_1171
SBOY300268 SBO_3553SBO_1548SBO_1548SBO_3553SBO_1548SBO_3553
SBAL402882 SHEW185_3213SHEW185_3213SHEW185_3213SHEW185_3213SHEW185_3213SHEW185_3213
SBAL399599 SBAL195_3352SBAL195_2228SBAL195_2228SBAL195_3352SBAL195_2228SBAL195_3352
RSPH349102 RSPH17025_4273RSPH17025_4273RSPH17025_4273RSPH17025_4273RSPH17025_4273RSPH17025_4273
RSPH349101 RSPH17029_3775RSPH17029_3648RSPH17029_3775RSPH17029_3775RSPH17029_3775RSPH17029_3775
RSPH272943 RSP_3048RSP_3048RSP_3048RSP_3048RSP_3048RSP_3048
RSP357808 ROSERS_4542ROSERS_4542ROSERS_4542ROSERS_4542ROSERS_4542
RRUB269796 RRU_A1287RRU_A1287RRU_A1287RRU_A1287RRU_A1287RRU_A1287
RPOM246200 SPO_2389SPO_2389SPO_2389SPO_2389SPO_2389SPO_2389
RPAL316058 RPB_1492RPB_3416RPB_1492RPB_1492RPB_1492RPB_3139
RPAL316056 RPC_1877RPC_0661RPC_1877RPC_1877RPC_1877RPC_1877
RMET266264 RMET_1145RMET_1145RMET_1145RMET_1145RMET_1145RMET_1145
RDEN375451 RD1_3664RD1_3664RD1_3664RD1_3664RD1_3664
RCAS383372 RCAS_0090RCAS_0090RCAS_0090RCAS_0090RCAS_0090
PSYR223283 PSPTO_1789PSPTO_1789PSPTO_1789PSPTO_1789PSPTO_1789
PSYR205918 PSYR_3605PSYR_3605PSYR_3605PSYR_3605PSYR_3605
PSP56811 PSYCPRWF_0214PSYCPRWF_0214PSYCPRWF_0214PSYCPRWF_0214PSYCPRWF_0214PSYCPRWF_0214
PPRO298386 PBPRA2363PBPRB0330PBPRB0330PBPRA2363PBPRB0330PBPRB0079
PMUL272843 PM1793PM1754PM1754PM1793PM1754PM1793
PACN267747 PPA0517PPA0517PPA0517PPA0517PPA0517PPA0517
NSP35761 NOCA_4801NOCA_4801NOCA_4801NOCA_4801NOCA_4801
MTHE264732 MOTH_1389MOTH_1386MOTH_1386MOTH_1386MOTH_1386MOTH_1389
MSUC221988 MS0588MS0588MS0588MS0588MS0588MS0588
MSP266779 MESO_2539MESO_3611MESO_2539MESO_2539MESO_3611MESO_2539
MSP189918 MKMS_2212MKMS_3667MKMS_3667MKMS_2212MKMS_3667MKMS_2212
MSP164757 MJLS_2155MJLS_3599MJLS_2155MJLS_3599MJLS_2155
MSP164756 MMCS_2166MMCS_3594MMCS_3594MMCS_2166MMCS_3594MMCS_2166
MSME246196 MSMEG_2738MSMEG_6816MSMEG_2738MSMEG_6816MSMEG_2738
MGIL350054 MFLV_3958MFLV_5161MFLV_5161MFLV_3958MFLV_5161MFLV_3958
MABS561007 MAB_3041MAB_3041MAB_3041MAB_3041MAB_3041
KPNE272620 GKPORF_B3259GKPORF_B0577GKPORF_B0577GKPORF_B3259GKPORF_B0577GKPORF_B3259
HSOM228400 HSM_1835HSM_1275HSM_1275HSM_1835HSM_1275HSM_1835
HSOM205914 HS_1673HS_0806HS_0806HS_1673HS_0806HS_1673
HPYL85963 JHP0974JHP0974JHP0974JHP0974JHP0974
HPYL357544 HPAG1_0985HPAG1_0985HPAG1_0985HPAG1_0985HPAG1_0985
HPY HP0407HP0407HP0407HP0407HP0407
HINF71421 HI_0643HI_1047HI_1047HI_0643HI_1047HI_0643
HINF374930 CGSHIEE_06835CGSHIEE_06835CGSHIEE_06835CGSHIEE_06835CGSHIEE_06835CGSHIEE_06835
HINF281310 NTHI1207NTHI1207NTHI1207NTHI1207NTHI1207NTHI1207
HHEP235279 HH_0950HH_0950HH_0950HH_0950HH_0950HH_0950
HDUC233412 HD_1394HD_1394HD_1394HD_1394HD_1394HD_1394
ESP42895 ENT638_0173ENT638_1418ENT638_1418ENT638_0173ENT638_1418ENT638_0173
EFER585054 EFER_3548EFER_4181EFER_4181EFER_3548EFER_4181EFER_3548
ECOO157 BISCZ3785Z2576BISCZ3785BISC
ECOL83334 ECS1152ECS2294ECS2294ECS1152ECS2294ECS1152
ECOL585397 ECED1_2141ECED1_1757ECED1_1757ECED1_2141ECED1_1757ECED1_2141
ECOL585057 ECIAI39_4059ECIAI39_2254ECIAI39_2254ECIAI39_4059ECIAI39_2254ECIAI39_4059
ECOL585056 ECUMN_2170ECUMN_1873ECUMN_1873ECUMN_2170ECUMN_1873ECUMN_2170
ECOL585055 EC55989_4007EC55989_1753EC55989_1753EC55989_4007EC55989_1753EC55989_4007
ECOL585035 ECS88_3970ECS88_1633ECS88_1633ECS88_3970ECS88_1633ECS88_3970
ECOL585034 ECIAI1_3716ECIAI1_1638ECIAI1_1638ECIAI1_3716ECIAI1_1638ECIAI1_3716
ECOL481805 ECOLC_2598ECOLC_2702ECOLC_2702ECOLC_2598ECOLC_2702ECOLC_2598
ECOL469008 ECBD_2597ECBD_2059ECBD_2059ECBD_2597ECBD_2059ECBD_2597
ECOL439855 ECSMS35_1314ECSMS35_1613ECSMS35_1613ECSMS35_1314ECSMS35_1613ECSMS35_1314
ECOL413997 ECB_03401ECB_01557ECB_01557ECB_03401ECB_01557ECB_03401
ECOL409438 ECSE_3824ECSE_1709ECSE_1709ECSE_3824ECSE_1709ECSE_3824
ECOL405955 APECO1_922APECO1_671APECO1_671APECO1_922APECO1_671APECO1_922
ECOL364106 UTI89_C4091UTI89_C1775UTI89_C1775UTI89_C4091UTI89_C1775UTI89_C4091
ECOL362663 ECP_3654ECP_0908ECP_0908ECP_3654ECP_0908ECP_3654
ECOL331111 ECE24377A_1114ECE24377A_0969ECE24377A_0969ECE24377A_1114ECE24377A_0969ECE24377A_1114
ECOL316407 ECK3538:JW5940:B3551ECK1583:JW5260:B1588ECK1583:JW5260:B1588ECK3538:JW5940:B3551ECK1583:JW5260:B1588ECK3538:JW5940:B3551
ECOL199310 C4369C1978C1978C4369C1978C4369
ECAR218491 ECA1009ECA1009ECA1009ECA1009ECA1009
DSHI398580 DSHI_2278DSHI_2278DSHI_2278DSHI_2278DSHI_2278
DHAF138119 DSY4087DSY1448DSY1448DSY3535DSY1448DSY1448
CSP501479 CSE45_4404CSE45_4404CSE45_4404CSE45_4404CSE45_4404CSE45_4404
CPSY167879 CPS_1833CPS_1833CPS_1833CPS_1833CPS_1833CPS_1833
CJEJ407148 C8J_0241C8J_1482C8J_1482C8J_0241C8J_1482C8J_0241
CJEJ354242 CJJ81176_0291CJJ81176_1570CJJ81176_1570CJJ81176_0291CJJ81176_1570CJJ81176_0291
CHOM360107 CHAB381_1514CHAB381_1514CHAB381_1514CHAB381_1514CHAB381_1514CHAB381_1514
CFET360106 CFF8240_0429CFF8240_0429CFF8240_0429CFF8240_0429CFF8240_0429
CCUR360105 CCV52592_2044CCV52592_2107CCV52592_2107CCV52592_2044CCV52592_2107CCV52592_2044
CCON360104 CCC13826_1396CCC13826_1119CCC13826_0406CCC13826_1395CCC13826_0406CCC13826_1396
BTHA271848 BTH_I1105BTH_I1105BTH_I1105BTH_I1105BTH_I1105
BSP36773 BCEP18194_A3632BCEP18194_A3632BCEP18194_A3632BCEP18194_A3632BCEP18194_A3632BCEP18194_A3632
BPSE320373 BURPS668_3538BURPS668_3538BURPS668_3538BURPS668_3538BURPS668_3538
BPSE320372 BURPS1710B_A3841BURPS1710B_A3841BURPS1710B_A3841BURPS1710B_A3841BURPS1710B_A3841
BPSE272560 BPSL3038BPSL3038BPSL3038BPSL3038BPSL3038
BPET94624 BPET4165BPET4165BPET4165BPET4165BPET4165BPET4165
BCEN331272 BCEN2424_0545BCEN2424_0545BCEN2424_0545BCEN2424_0545BCEN2424_0545
BCEN331271 BCEN_0063BCEN_0063BCEN_0063BCEN_0063BCEN_0063
BAMY326423 RBAM_018770RBAM_018770RBAM_018770RBAM_018770RBAM_038020
BAMB398577 BAMMC406_5286BAMMC406_0475BAMMC406_0475BAMMC406_5286BAMMC406_5286
BAMB339670 BAMB_3891BAMB_0450BAMB_3891BAMB_3891BAMB_3891BAMB_3891
ASAL382245 ASA_0265ASA_0265ASA_0265ASA_0265ASA_0265ASA_0265
APLE434271 APJL_0686APJL_1705APJL_1705APJL_0686APJL_1705APJL_0686
APLE416269 APL_1798APL_1674APL_1674APL_1798APL_1674APL_1798
AMET293826 AMET_1330AMET_1330AMET_1330AMET_1330AMET_1330AMET_1330
AHYD196024 AHA_4049AHA_4049AHA_4049AHA_4049AHA_4049AHA_4049
ACAU438753 AZC_2648AZC_3780AZC_2648AZC_2648AZC_2648AZC_2648
ABUT367737 ABU_1143ABU_1143ABU_1143ABU_1143ABU_1143ABU_1143


Organism features enriched in list (features available for 118 out of the 126 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.005992869286
Disease:Bubonic_plague 0.000062066
Disease:Dysentery 0.000062066
Disease:Gastroenteritis 3.145e-81213
Disease:Melioidosis 0.008123833
Disease:chronic_bronchitis 0.008123833
Endospores:No 0.005955232211
Endospores:Yes 0.0017307353
GC_Content_Range4:0-40 4.431e-819213
GC_Content_Range4:40-60 4.717e-871224
GC_Content_Range7:0-30 0.0001942147
GC_Content_Range7:30-40 0.000102518166
GC_Content_Range7:50-60 2.299e-640107
Genome_Size_Range5:0-2 3.283e-613155
Genome_Size_Range5:2-4 3.002e-1013197
Genome_Size_Range5:4-6 2.151e-1878184
Genome_Size_Range9:1-2 0.000370113128
Genome_Size_Range9:2-3 0.000182211120
Genome_Size_Range9:3-4 1.771e-6277
Genome_Size_Range9:4-5 2.415e-73996
Genome_Size_Range9:5-6 1.223e-83988
Genome_Size_Range9:6-8 0.00691521438
Gram_Stain:Gram_Neg 2.888e-14102333
Gram_Stain:Gram_Pos 1.551e-710150
Habitat:Multiple 0.007701246178
Motility:No 2.610e-89151
Motility:Yes 1.357e-881267
Oxygen_Req:Aerobic 1.205e-617185
Oxygen_Req:Anaerobic 9.518e-66102
Oxygen_Req:Facultative 2.305e-1578201
Pathogenic_in:Human 0.000030362213
Pathogenic_in:No 0.000023327226
Shape:Coccus 4.416e-8182
Shape:Rod 3.504e-997347
Temp._range:Mesophilic 0.0046728105473



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 458
Effective number of orgs (counting one per cluster within 468 clusters): 362

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH721
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7022   G6846   G6845   EG11814   EG10232   EG10124   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834
SMED366394
SMAR399550
SLAC55218
SHAE279808
SGOR29390
SGLO343509
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RTYP257363
RSOL267608 RSC2859
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316057
RPAL316055
RMAS416276
RLEG216596
RFER338969
RFEL315456
RETL347834 RHE_CH01484
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP312153
PSP296591
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPEN278197
PNAP365044
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PISL384616
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PFLU205922
PENT384676
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102 PARS_0938
PARC259536
PAER208964
PAER208963
PAER178306 PAE2859
PABY272844
OTSU357244
OIHE221109
OCAR504832
OANT439375 OANT_2579
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSP400668
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108 AMB3818
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_3381
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091 VNG0829G
HNEP81032
HMOD498761
HHAL349124
HCHE349521
HBUT415426
HAUR316274 HAUR_4673
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799
GKAU235909 GK3484
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRED349161 DRED_1345
DRAD243230 DR_0397
DPSY177439
DOLE96561 DOLE_0313
DNOD246195
DGEO319795 DGEO_0402
DETH243164
DDES207559
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CSAL290398
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ195099
CJEI306537
CJAP155077
CHUT269798
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CAULO
CACE272562
CABO218497
BXEN266265
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSUI470137
BSUI204722
BSP376
BSP107806
BQUI283165
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP62928 AZO3661
ASP232721
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFER243159
ADEH290397
ACRY349163
ACEL351607
ABOR393595
ABAU360910
ABAC204669
AAUR290340
AAEO224324


Organism features enriched in list (features available for 427 out of the 458 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.0006465193286
Disease:gastroenteritis 9.512e-7113
Endospores:No 0.0097151165211
GC_Content_Range4:0-40 1.518e-13192213
GC_Content_Range4:40-60 0.0001030145224
GC_Content_Range4:60-100 0.000111889145
GC_Content_Range7:0-30 4.110e-64647
GC_Content_Range7:30-40 6.768e-8146166
GC_Content_Range7:50-60 0.000662465107
GC_Content_Range7:60-70 0.000016479134
Genome_Size_Range5:0-2 1.648e-9140155
Genome_Size_Range5:2-4 2.062e-9173197
Genome_Size_Range5:4-6 5.746e-2187184
Genome_Size_Range5:6-10 0.00627572747
Genome_Size_Range9:0-1 0.00017762727
Genome_Size_Range9:1-2 2.575e-6113128
Genome_Size_Range9:2-3 0.0001310103120
Genome_Size_Range9:3-4 0.00003377077
Genome_Size_Range9:4-5 5.186e-114396
Genome_Size_Range9:5-6 2.325e-74488
Genome_Size_Range9:6-8 0.00647572138
Gram_Stain:Gram_Neg 4.260e-8216333
Gram_Stain:Gram_Pos 0.0003548125150
Habitat:Aquatic 0.00508387691
Motility:No 2.928e-7133151
Motility:Yes 1.696e-9164267
Optimal_temp.:30-37 0.00333441818
Optimal_temp.:35-37 0.0066391513
Oxygen_Req:Aerobic 0.0032524148185
Oxygen_Req:Anaerobic 8.027e-793102
Oxygen_Req:Facultative 1.716e-12111201
Pathogenic_in:Human 0.0003627139213
Pathogenic_in:No 0.0001233184226
Shape:Coccus 6.161e-97982
Shape:Rod 6.431e-10223347
Shape:Sphere 0.00241371919



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CHOM360107 ncbi Campylobacter hominis ATCC BAA-381 0.00197756136
HHEP235279 ncbi Helicobacter hepaticus ATCC 51449 0.00281486506
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-176 0.00428596976
CJEJ407148 ncbi Campylobacter jejuni jejuni 81116 0.00487217126
CCON360104 ncbi Campylobacter concisus 13826 0.00650427476
CCUR360105 ncbi Campylobacter curvus 525.92 0.00721617606


Names of the homologs of the genes in the group in each of these orgs
  G7022   G6846   G6845   EG11814   EG10232   EG10124   
CHOM360107 CHAB381_1514CHAB381_1514CHAB381_1514CHAB381_1514CHAB381_1514CHAB381_1514
HHEP235279 HH_0950HH_0950HH_0950HH_0950HH_0950HH_0950
CJEJ354242 CJJ81176_0291CJJ81176_1570CJJ81176_1570CJJ81176_0291CJJ81176_1570CJJ81176_0291
CJEJ407148 C8J_0241C8J_1482C8J_1482C8J_0241C8J_1482C8J_0241
CCON360104 CCC13826_1396CCC13826_1119CCC13826_0406CCC13826_1395CCC13826_0406CCC13826_1396
CCUR360105 CCV52592_2044CCV52592_2107CCV52592_2107CCV52592_2044CCV52592_2107CCV52592_2044


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Food_poisoning 0.003031929
Disease:Gastroenteritis 0.0063875213
GC_Content_Range7:30-40 0.00775585166
Genome_Size_Range5:0-2 0.00562555155
Genome_Size_Range9:1-2 0.00226505128
Oxygen_Req:Microaerophilic 9.174e-6418
Shape:Spiral 2.874e-6534



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73570.5248
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4837
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218990.4601
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176850.4385
PWY0-901 (selenocysteine biosynthesis I (bacteria))230990.4346
GLUTDEG-PWY (glutamate degradation II)194890.4294
ECASYN-PWY (enterobacterial common antigen biosynthesis)191880.4279
AST-PWY (arginine degradation II (AST pathway))120660.4229
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4152
PWY-46 (putrescine biosynthesis III)138700.4050



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6846   G6845   EG11814   EG10232   EG10124   
G70220.9993470.9994120.9997690.9994370.999774
G68460.9997260.9993280.9997230.999286
G68450.9993950.999750.999351
EG118140.9994350.999747
EG102320.999382
EG10124



Back to top


PAIRWISE BLAST SCORES:

  G7022   G6846   G6845   EG11814   EG10232   EG10124   
G70220.0f05.4e-593.7e-6101.6e-680
G68461.3e-570.0f009.1e-5903.9e-65
G68451.4e-6700.0f02.5e-7003.9e-72
EG1181409.0e-592.4e-650.0f01.5e-700
EG102321.2e-70004.4e-730.0f08.3e-79
EG1012401.7e-693.9e-7205.6e-800.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-1601 (putative selenate reductase) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.333, average score: 0.999)
  Genes in pathway or complex:
             0.9858 0.9572 G6848 (ynfH) G6848-MONOMER (oxidoreductase, predicted membrane anchor subunit)
             0.9838 0.9622 G6847 (ynfG) G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)
   *in cand* 0.9996 0.9993 G6846 (ynfF) G6846-MONOMER (oxidoreductase subunit)
   *in cand* 0.9996 0.9994 G6845 (ynfE) G6845-MONOMER (oxidoreductase subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG10124 (bisC) EG10124-MONOMER (biotin sulfoxide reductase)
   *in cand* 0.9996 0.9994 EG10232 (dmsA) DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
   *in cand* 0.9996 0.9993 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
   *in cand* 0.9996 0.9993 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)

- PWY0-1347 (NADH to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.118, degree of match cand to pw: 0.333, average score: 0.832)
  Genes in pathway or complex:
             0.4029 0.3131 EG12083 (nuoB) NUOB-MONOMER (NADH:ubiquinone oxidoreductase, chain B)
             0.4062 0.3050 EG12084 (nuoC) NUOC-MONOMER (NADH:ubiquinone oxidoreductase, chain CD)
             0.3584 0.2690 EG12089 (nuoI) NUOI-MONOMER (NADH:ubiquinone oxidoreductase, chain I)
             0.4602 0.3284 EG12086 (nuoE) NUOE-MONOMER (NADH:ubiquinone oxidoreductase, chain E)
             0.3155 0.1467 EG11774 (nuoF) NUOF-MONOMER (NADH:ubiquinone oxidoreductase, chain F)
             0.3781 0.2032 EG12087 (nuoG) NUOG-MONOMER (NADH:ubiquinone oxidoreductase, chain G)
             0.4158 0.2689 EG12093 (nuoN) NUON-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit N)
             0.3683 0.2234 EG11773 (nuoM) NUOM-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit M)
             0.3628 0.3128 EG12092 (nuoL) NUOL-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit L)
             0.4197 0.3447 EG12091 (nuoK) NUOK-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit K)
             0.2792 0.2126 EG12090 (nuoJ) NUOJ-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit J)
             0.3730 0.2575 EG12088 (nuoH) NUOH-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit H)
             0.3973 0.3318 EG12082 (nuoA) NUOA-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit A)
             0.9987 0.9981 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
   *in cand* 0.9996 0.9993 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
   *in cand* 0.9996 0.9993 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.9985 0.9980 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG10124 (bisC) EG10124-MONOMER (biotin sulfoxide reductase)
   *in cand* 0.9996 0.9994 EG10232 (dmsA) DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
   *in cand* 0.9996 0.9994 G6845 (ynfE) G6845-MONOMER (oxidoreductase subunit)
   *in cand* 0.9996 0.9993 G6846 (ynfF) G6846-MONOMER (oxidoreductase subunit)

- PWY0-1355 (formate to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.200, degree of match cand to pw: 0.333, average score: 0.730)
  Genes in pathway or complex:
             0.5092 0.2001 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
             0.6969 0.4126 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.4053 0.1702 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
             0.7037 0.5182 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.9987 0.9981 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
   *in cand* 0.9996 0.9993 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
   *in cand* 0.9996 0.9993 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.9985 0.9980 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG10124 (bisC) EG10124-MONOMER (biotin sulfoxide reductase)
   *in cand* 0.9996 0.9994 EG10232 (dmsA) DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
   *in cand* 0.9996 0.9994 G6845 (ynfE) G6845-MONOMER (oxidoreductase subunit)
   *in cand* 0.9996 0.9993 G6846 (ynfF) G6846-MONOMER (oxidoreductase subunit)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6845 G6846 (centered at G6846)
EG10124 (centered at EG10124)
EG10232 (centered at EG10232)
EG11814 (centered at EG11814)
G7022 (centered at G7022)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7022   G6846   G6845   EG11814   EG10232   EG10124   
152/623147/623141/623147/623143/623151/623
AAVE397945:0:Tyes0-00-0
ABUT367737:0:Tyes000000
ACAU438753:0:Tyes011450000
AEHR187272:0:Tyes-00---
AFUL224325:0:Tyes-00-0-
AHYD196024:0:Tyes000000
AMET293826:0:Tyes000000
APLE416269:0:Tyes128001280128
APLE434271:0:Tno010561056010560
ASAL382245:5:Tyes000000
ASP62928:0:Tyes0-----
ASP76114:2:Tyes-00-0-
BAMB339670:2:Tno0-0000
BAMB339670:3:Tno-0----
BAMB398577:2:Tno0--0-0
BAMB398577:3:Tno-00---
BAMY326423:0:Tyes000-01923
BBRO257310:0:Tyes00-0-3302
BCEN331271:2:Tno-00000
BCEN331272:3:Tyes-00000
BJAP224911:0:Fyes00-0-0
BLIC279010:0:Tyes000-0-
BPAR257311:0:Tno00-0-1982
BPER257313:0:Tyes0--0-0
BPET94624:0:Tyes000000
BPSE272560:1:Tyes00000-
BPSE320372:1:Tno00000-
BPSE320373:1:Tno00000-
BPUM315750:0:Tyes-00-0-
BSP36773:2:Tyes000000
BSUB:0:Tyes-00-0-
BTHA271848:1:Tno000-00
BVIE269482:7:Tyes-00-0-
CCON360104:2:Tyes103001347102913471030
CCUR360105:0:Tyes019931993019930
CFET360106:0:Tyes0-0000
CHOM360107:1:Tyes000000
CHYD246194:0:Tyes-00-0-
CJEJ192222:0:Tyes00-0-0
CJEJ354242:2:Tyes012341234012340
CJEJ360109:0:Tyes0--1-0
CJEJ407148:0:Tno012751275012750
CPSY167879:0:Tyes000000
CSP501479:6:Fyes000000
DGEO319795:1:Tyes-----0
DHAF138119:0:Tyes267300212100
DOLE96561:0:Tyes----0-
DRAD243230:3:Tyes-----0
DRED349161:0:Tyes0-----
DSHI398580:5:Tyes00-000
ECAR218491:0:Tyes0-0000
ECOL199310:0:Tno235800235802358
ECOL316407:0:Tno212700212702127
ECOL331111:6:Tno139001390139
ECOL362663:0:Tno274400274402744
ECOL364106:1:Tno230600230602306
ECOL405955:2:Tyes255002550255
ECOL409438:6:Tyes215800215802158
ECOL413997:0:Tno186800186801868
ECOL439855:4:Tno029529502950
ECOL469008:0:Tno519005190519
ECOL481805:0:Tno010310301030
ECOL585034:0:Tno204800204802048
ECOL585035:0:Tno226300226302263
ECOL585055:0:Tno221600221602216
ECOL585056:2:Tno292002920292
ECOL585057:0:Tno181900181901819
ECOL585397:0:Tno370003700370
ECOL83334:0:Tno011611161011610
ECOLI:0:Tno101572071910702715
ECOO157:0:Tno217410770217410772174
EFER585054:1:Tyes060360306030
ESP42895:1:Tyes012681268012680
GKAU235909:1:Tyes--0---
GTHE420246:1:Tyes-0000-
HAUR316274:2:Tyes----0-
HDUC233412:0:Tyes000000
HHEP235279:0:Tyes000000
HINF281310:0:Tyes000000
HINF374930:0:Tyes000000
HINF71421:0:Tno039939903990
HMAR272569:8:Tyes---00-
HMUK485914:0:Tyes0----0
HPY:0:Tno0-0000
HPYL357544:1:Tyes0-0000
HPYL85963:0:Tno0-0000
HSAL478009:4:Tyes0----0
HSOM205914:1:Tyes862008620862
HSOM228400:0:Tno563005630563
HSP64091:2:Tno-----0
KPNE272620:2:Tyes264300264302643
KRAD266940:2:Fyes0--0-0
LCHO395495:0:Tyes-----0
MABS561007:1:Tyes0000-0
MBOV233413:0:Tno00-0-0
MBOV410289:0:Tno00-0-0
MEXT419610:0:Tyes-0000-
MFLA265072:0:Tyes-00-0-
MGIL350054:3:Tyes012051205012050
MMAG342108:0:Tyes--0---
MSME246196:0:Tyes04036-040360
MSP164756:1:Tno014441444014440
MSP164757:0:Tno01453-014530
MSP189918:2:Tyes014691469014690
MSP266779:3:Tyes010760010760
MSP409:2:Tyes-0--0-
MSUC221988:0:Tyes000000
MTBCDC:0:Tno00-0-0
MTBRV:0:Tno00-0-0
MTHE264732:0:Tyes300003
MTUB336982:0:Tno00-0-0
MTUB419947:0:Tyes00-0-0
MVAN350058:0:Tyes0--000
NSP35761:0:Tyes00-000
OANT439375:5:Tyes0-----
PACN267747:0:Tyes000000
PAER178306:0:Tyes--0---
PARS340102:0:Tyes--0---
PMUL272843:1:Tyes390039039
PPRO298386:1:Tyes-251251-2510
PPRO298386:2:Tyes0--0--
PSP56811:2:Tyes000000
PSYR205918:0:Tyes0-0000
PSYR223283:2:Tyes0-0000
RCAS383372:0:Tyes000-00
RDEN375451:4:Tyes00-000
RETL347834:5:Tyes-0----
REUT264198:2:Tyes0--000
REUT381666:2:Tyes000-0-
RMET266264:2:Tyes000000
RPAL258594:0:Tyes00-0-0
RPAL316056:0:Tyes121101211121112111211
RPAL316058:0:Tyes019350001657
RPOM246200:1:Tyes000000
RRUB269796:1:Tyes000000
RSOL267608:1:Tyes-----0
RSP101510:3:Fyes0--0-0
RSP357808:0:Tyes0000-0
RSPH272943:3:Tyes000000
RSPH349101:1:Tno1230123123123123
RSPH349102:2:Tyes000000
SBAL399599:3:Tyes116500116501165
SBAL402882:1:Tno000000
SBOY300268:1:Tyes190600190601906
SDYS300267:1:Tyes011261126296111260
SENT209261:0:Tno182600182601826
SENT220341:0:Tno237200237202372
SENT295319:0:Tno177200177201772
SENT321314:2:Tno045945904590
SENT454169:2:Tno045745704570
SFLE198214:0:Tyes2610712712261002610
SFLE373384:0:Tno055955905170
SHAL458817:0:Tyes310225962596310203102
SHIGELLA:0:Tno952009520952
SLOI323850:0:Tyes000000
SONE211586:1:Tyes019319301930
SPEA398579:0:Tno542005421066542
SPRO399741:1:Tyes155700155701557
SSED425104:0:Tyes435004350435
SSON300269:1:Tyes333003330333
SSP94122:1:Tyes000000
STHE292459:0:Tyes166416641664016641664
STYP99287:1:Tyes231200231202312
TFUS269800:0:Tyes0--000
TTHE262724:1:Tyes-01665---
TTHE300852:2:Tyes-00---
VCHO:0:Tyes000000
VCHO345073:1:Tno000000
VEIS391735:1:Tyes0--000
VFIS312309:1:Tyes106002170908
VPAR223926:0:Tyes0--0-0
VPAR223926:1:Tyes-00-0-
VVUL196600:2:Tyes000000
VVUL216895:1:Tno000000
WSUC273121:0:Tyes371003710371
YENT393305:1:Tyes181200001812
YPES187410:5:Tno167100167101671
YPES214092:3:Tno024262426024260
YPES349746:2:Tno227100227102271
YPES360102:3:Tyes023832383023830
YPES377628:2:Tno160700160701607
YPES386656:2:Tno013241324013240
YPSE273123:2:Tno367003670367
YPSE349747:2:Tno036536503650



Back to top