CANDIDATE ID: 488

CANDIDATE ID: 488

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9940387e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- RUVB (ruvB) (b1860)
   Products of gene:
     - EG10924-MONOMER (branch migration of Holliday structures; repair helicase)
     - RUVABC-CPLX (resolvasome)
       Reactions:
        DNA combined with exogenous DNA to form a recombinational junction  =  resolution of recombinational junction formation of two intact strands

- RUVA (ruvA) (b1861)
   Products of gene:
     - EG10923-MONOMER (branch migration of Holliday structures; repair)
     - RUVABC-CPLX (resolvasome)
       Reactions:
        DNA combined with exogenous DNA to form a recombinational junction  =  resolution of recombinational junction formation of two intact strands

- G7020 (cmoA) (b1870)
   Products of gene:
     - G7020-MONOMER (predicted methyltransferase)

- EG11137 (yebC) (b1864)
   Products of gene:
     - EG11137-MONOMER (conserved protein)

- EG10925 (ruvC) (b1863)
   Products of gene:
     - EG10925-MONOMER (Holliday junction nuclease; resolution of structures; repair)
     - RUVABC-CPLX (resolvasome)
       Reactions:
        DNA combined with exogenous DNA to form a recombinational junction  =  resolution of recombinational junction formation of two intact strands

- EG10097 (aspS) (b1866)
   Products of gene:
     - ASPS-MONOMER (aspartyl-tRNA synthetase)
     - ASPS-CPLX (aspartyl-tRNA synthetase)
       Reactions:
        tRNAasp + L-aspartate + ATP  ->  L-aspartyl-tRNAasp + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 216
Effective number of orgs (counting one per cluster within 468 clusters): 150

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79016
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TFUS269800 ncbi Thermobifida fusca YX5
TERY203124 ncbi Trichodesmium erythraeum IMS1015
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STRO369723 ncbi Salinispora tropica CNB-4405
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SARE391037 ncbi Salinispora arenicola CNS-2055
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSP357808 ncbi Roseiflexus sp. RS-15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NSP387092 ncbi Nitratiruptor sp. SB155-25
NSP103690 ncbi Nostoc sp. PCC 71205
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MXAN246197 ncbi Myxococcus xanthus DK 16226
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MPET420662 ncbi Methylibium petroleiphilum PM15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT85
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237795
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf45
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-156
GFOR411154 ncbi Gramella forsetii KT08035
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DRED349161 ncbi Desulfotomaculum reducens MI-15
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus6
CDIF272563 ncbi Clostridium difficile 6305
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBRO257310 ncbi Bordetella bronchiseptica RB505
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
AVAR240292 ncbi Anabaena variabilis ATCC 294135
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AMAR329726 ncbi Acaryochloris marina MBIC110175
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ACEL351607 ncbi Acidothermus cellulolyticus 11B5
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N5
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  RUVB   RUVA   G7020   EG11137   EG10925   EG10097   
YPSE349747 YPSIP31758_2030YPSIP31758_2031YPSIP31758_2038YPSIP31758_2033YPSIP31758_2032YPSIP31758_2035
YPSE273123 YPTB2041YPTB2040YPTB2033YPTB2038YPTB2039YPTB2036
YPES386656 YPDSF_1064YPDSF_1065YPDSF_1072YPDSF_1067YPDSF_1066YPDSF_1069
YPES377628 YPN_1535YPN_1534YPN_1527YPN_1532YPN_1533YPN_1530
YPES360102 YPA_1441YPA_1440YPA_1432YPA_1437YPA_1438YPA_1435
YPES349746 YPANGOLA_A2420YPANGOLA_A2421YPANGOLA_A2429YPANGOLA_A2424YPANGOLA_A2423YPANGOLA_A2426
YPES214092 YPO2058YPO2057YPO2050YPO2055YPO2056YPO2053
YPES187410 Y2252Y2253Y2261Y2255Y2254Y2258
YENT393305 YE2392YE2393YE2401YE2395YE2394YE2397
XORY360094 XOOORF_3306XOOORF_3308XOOORF_3310XOOORF_3309XOOORF_3313
XORY342109 XOO1547XOO1545XOO1543XOO1544XOO1540
XORY291331 XOO1663XOO1661XOO1659XOO1660XOO1656
XFAS405440 XFASM12_1063XFASM12_1061XFASM12_1059XFASM12_1060XFASM12_1108
XFAS183190 PD_0889PD_0887PD_0885PD_0886PD_0946
XFAS160492 XF1902XF1904XF1906XF1905XF1856
XCAM487884 XCC-B100_1174XCC-B100_1171XCC-B100_1169XCC-B100_1170XCC-B100_1166
XCAM316273 XCAORF_3345XCAORF_3348XCAORF_3350XCAORF_3349XCAORF_3353
XCAM314565 XC_1136XC_1133XC_1131XC_1132XC_1128
XCAM190485 XCC3023XCC3025XCC3027XCC3026XCC3030
XAXO190486 XAC3147XAC3149XAC3151XAC3150XAC3154
VVUL196600 VV2284VV2285VV2290VV2287VV2288
VPAR223926 VP1052VP1051VP1045VP1048VP1047
VFIS312309 VF0952VF0951VF0948VF0950VF0949
VEIS391735 VEIS_4070VEIS_4068VEIS_4238VEIS_2947VEIS_1326
VCHO345073 VC0395_A1436VC0395_A1437VC0395_A0733VC0395_A1438VC0395_A0735
VCHO VC1845VC1846VC1164VC1847VC1166
TTUR377629 TERTU_3434TERTU_3435TERTU_1831TERTU_0864TERTU_3436TERTU_0863
TTEN273068 TTE1180TTE1179TTE1135TTE1178TTE1231
TSP1755 TETH514_1454TETH514_1453TETH514_1449TETH514_1452TETH514_1473
TPSE340099 TETH39_1014TETH39_1013TETH39_1009TETH39_1012TETH39_1036
TFUS269800 TFU_2093TFU_2094TFU_2096TFU_2095TFU_2086
TERY203124 TERY_1365TERY_0327TERY_2125TERY_3620TERY_2354
TDEN292415 TBD_2211TBD_2213TBD_2215TBD_2214TBD_0442
TCRU317025 TCR_0894TCR_0893TCR_0079TCR_0892TCR_0890
SWOL335541 SWOL_1431SWOL_1432SWOL_1435SWOL_1433SWOL_0812
STYP99287 STM1894STM1895STM1905STM1899STM1898STM1901
STRO369723 STROP_1810STROP_1809STROP_1792STROP_1808STROP_1821
STHE292459 STH1161STH1160STH1004STH1159STH2421
SSP94122 SHEWANA3_1957SHEWANA3_1956SHEWANA3_1951SHEWANA3_1954SHEWANA3_1955SHEWANA3_1953
SSON300269 SSO_1281SSO_1280SSO_1250SSO_1277SSO_1278SSO_1275
SSED425104 SSED_2034SSED_2033SSED_2028SSED_2031SSED_2032SSED_2030
SPRO399741 SPRO_2776SPRO_2777SPRO_2786SPRO_2779SPRO_2778SPRO_2781
SPEA398579 SPEA_2362SPEA_2363SPEA_2368SPEA_2365SPEA_2364SPEA_2366
SONE211586 SO_2429SO_2430SO_2435SO_2432SO_2431SO_2433
SLOI323850 SHEW_2075SHEW_2076SHEW_2081SHEW_2078SHEW_2077SHEW_2079
SHAL458817 SHAL_1922SHAL_1921SHAL_1916SHAL_1919SHAL_1920SHAL_1918
SGLO343509 SG1262SG1261SG1253SG1259SG1260SG1257
SFUM335543 SFUM_0993SFUM_0994SFUM_1190SFUM_0996SFUM_0995SFUM_3302
SFLE373384 SFV_1862SFV_1863SFV_1906SFV_1866SFV_1865SFV_1868
SFLE198214 AAN43427.1AAN43428.1AAN43465.1AAN43430.1AAN43432.1
SERY405948 SACE_2023SACE_2022SACE_1661SACE_2018SACE_2021SACE_2041
SENT454169 SEHA_C2108SEHA_C2109SEHA_C2119SEHA_C2113SEHA_C2112SEHA_C2115
SENT321314 SCH_1902SCH_1903SCH_1913SCH_1907SCH_1906SCH_1909
SENT295319 SPA0975SPA0974SPA0964SPA0970SPA0971SPA0968
SENT220341 STY2102STY2103STY2113STY2107STY2106STY2109
SENT209261 T0983T0982T0972T0978T0979T0976
SDYS300267 SDY_1147SDY_1148SDY_1169SDY_1151SDY_1150SDY_1153
SDEN318161 SDEN_1883SDEN_1884SDEN_1889SDEN_1886SDEN_1885SDEN_1887
SDEG203122 SDE_2533SDE_2534SDE_1853SDE_2535SDE_0913
SBOY300268 SBO_1177SBO_1178SBO_1132SBO_1187SBO_1186SBO_1189
SBAL402882 SHEW185_2303SHEW185_2304SHEW185_2309SHEW185_2306SHEW185_2305SHEW185_2307
SBAL399599 SBAL195_2419SBAL195_2420SBAL195_2425SBAL195_2422SBAL195_2421SBAL195_2423
SARE391037 SARE_1800SARE_1799SARE_1779SARE_1798SARE_1812
SACI56780 SYN_02971SYN_02972SYN_02974SYN_02973SYN_02535
RSP357808 ROSERS_2425ROSERS_3772ROSERS_4362ROSERS_4363ROSERS_1979
RSOL267608 RSC0500RSC0501RSC2190RSC0503RSC0466
RMET266264 RMET_0423RMET_0424RMET_0785RMET_0426RMET_0378
RFER338969 RFER_0820RFER_0739RFER_2075RFER_3417RFER_1297
REUT381666 H16_A0497H16_A0498H16_A0916H16_A0500H16_A0453
REUT264198 REUT_A0483REUT_A0484REUT_A2522REUT_A0486REUT_A0439
RCAS383372 RCAS_3053RCAS_1112RCAS_0718RCAS_0719RCAS_3786
PTHE370438 PTH_1027PTH_1026PTH_1024PTH_1025PTH_1049
PSYR223283 PSPTO_3977PSPTO_3978PSPTO_4212PSPTO_3980PSPTO_3979PSPTO_3981
PSYR205918 PSYR_1410PSYR_1409PSYR_3946PSYR_1407PSYR_1408PSYR_1406
PSTU379731 PST_2808PST_2809PST_1238PST_2811PST_2810PST_2813
PSP56811 PSYCPRWF_1452PSYCPRWF_1424PSYCPRWF_0290PSYCPRWF_1013PSYCPRWF_1433PSYCPRWF_0991
PSP312153 PNUC_1880PNUC_1879PNUC_0618PNUC_1878PNUC_1892
PSP296591 BPRO_4093BPRO_4094BPRO_1967BPRO_1083BPRO_0866
PPUT76869 PPUTGB1_4201PPUTGB1_4202PPUTGB1_4366PPUTGB1_4204PPUTGB1_4203PPUTGB1_4205
PPUT351746 PPUT_1246PPUT_1245PPUT_4280PPUT_1243PPUT_1244PPUT_1242
PPUT160488 PP_1217PP_1216PP_1441PP_1214PP_1215PP_1213
PPRO298386 PBPRA1117PBPRA1116PBPRA1110PBPRA1113PBPRA1114PBPRA1112
PNAP365044 PNAP_0512PNAP_0510PNAP_1728PNAP_3409PNAP_0787
PMUL272843 PM0976PM0977PM0985PM0980PM0978PM0983
PMEN399739 PMEN_1272PMEN_1271PMEN_1482PMEN_1269PMEN_1270PMEN_1268
PLUM243265 PLU2112PLU2111PLU2103PLU2109PLU2110PLU2107
PING357804 PING_0719PING_0718PING_0698PING_0716PING_0699
PHAL326442 PSHAA1875PSHAA1876PSHAA1945PSHAA1877PSHAA1938
PFLU220664 PFL_4763PFL_4764PFL_4926PFL_4766PFL_4765PFL_4767
PFLU216595 PFLU4913PFLU4914PFLU1067PFLU4916PFLU4915PFLU4917
PFLU205922 PFL_4407PFL_4408PFL_4582PFL_4410PFL_4409PFL_4411
PENT384676 PSEEN4092PSEEN4093PSEEN4372PSEEN4095PSEEN4094PSEEN4096
PCRY335284 PCRYO_0685PCRYO_0684PCRYO_2242PCRYO_1479PCRYO_0671PCRYO_1183
PCAR338963 PCAR_2338PCAR_2337PCAR_0081PCAR_2335PCAR_2336PCAR_1040
PATL342610 PATL_2944PATL_2945PATL_4027PATL_2946PATL_2948
PARC259536 PSYC_0710PSYC_0709PSYC_1949PSYC_0938PSYC_0699PSYC_1203
PAER208964 PA0967PA0966PA0775PA0964PA0965PA0963
PAER208963 PA14_51780PA14_51790PA14_54260PA14_51810PA14_51800PA14_51820
OANT439375 OANT_1213OANT_1212OANT_1508OANT_1200OANT_1211
NSP387092 NIS_1098NIS_1129NIS_0560NIS_1857NIS_0771
NSP103690 ALL2894ALL0375ALL4276ALL2297ALL2436
NOCE323261 NOC_0140NOC_0139NOC_2818NOC_0137NOC_0138NOC_0302
NMUL323848 NMUL_A2719NMUL_A2720NMUL_A2722NMUL_A2721NMUL_A0603
NMEN374833 NMCC_1124NMCC_1880NMCC_1548NMCC_1325NMCC_1676
NMEN272831 NMC1144NMC0259NMC1563NMC1352NMC1684
NMEN122587 NMA1412NMA2221NMA1902NMA1631NMA2019
NMEN122586 NMB_1243NMB_0265NMB_1648NMB_1419NMB_0466
NGON242231 NGO0760NGO1730NGO1291NGO0153NGO1489
NEUT335283 NEUT_0284NEUT_0283NEUT_0281NEUT_0282NEUT_0616
NEUR228410 NE0213NE0212NE0210NE0211NE2252
MXAN246197 MXAN_4969MXAN_4972MXAN_1559MXAN_4974MXAN_4973MXAN_4684
MSUC221988 MS0713MS0712MS0706MS0710MS0711MS0708
MPET420662 MPE_A0327MPE_A3236MPE_A1337MPE_A0482MPE_A1070
MFLA265072 MFLA_2344MFLA_2353MFLA_2355MFLA_2354MFLA_2384
MCAP243233 MCA_1223MCA_1222MCA_2311MCA_1220MCA_1221MCA_1776
MAQU351348 MAQU_1704MAQU_1705MAQU_2762MAQU_1706MAQU_1707
LPNE400673 LPC_1000LPC_0713LPC_0711LPC_0712LPC_0892
LPNE297246 LPP1534LPP1251LPP1249LPP1250LPP1434
LPNE297245 LPL1449LPL1251LPL1249LPL1250LPL1550
LPNE272624 LPG1576LPG1288LPG1286LPG1287LPG1478
LCHO395495 LCHO_3954LCHO_3953LCHO_1953LCHO_0531LCHO_4013
KPNE272620 GKPORF_B1537GKPORF_B1538GKPORF_B1546GKPORF_B1540GKPORF_B1539GKPORF_B1542
JSP375286 MMA_0311MMA_0310MMA_0544MMA_0309MMA_3099
ILOI283942 IL1085IL1086IL1091IL1088IL1087IL1089
HSOM228400 HSM_0143HSM_0142HSM_0858HSM_1763HSM_1762HSM_0857
HSOM205914 HS_0270HS_0269HS_1222HS_0508HS_0509HS_1223
HMOD498761 HM1_1829HM1_1828HM1_1824HM1_1827HM1_1848
HINF71421 HI_0312HI_0313HI_0319HI_0315HI_0314HI_0317
HINF374930 CGSHIEE_01495CGSHIEE_01490CGSHIEE_01430CGSHIEE_01480CGSHIEE_01485CGSHIEE_01440
HINF281310 NTHI0430NTHI0431NTHI0438NTHI0433NTHI0432NTHI0435
HHAL349124 HHAL_2213HHAL_2212HHAL_2210HHAL_2211HHAL_2226
HDUC233412 HD_1757HD_1758HD_1267HD_0596HD_0593HD_0599
HCHE349521 HCH_04922HCH_04923HCH_02238HCH_04926HCH_04924HCH_04927
HAUR316274 HAUR_2295HAUR_2516HAUR_3981HAUR_3030HAUR_4753
HARS204773 HEAR0258HEAR0257HEAR0561HEAR0256HEAR2844
GURA351605 GURA_1413GURA_1414GURA_1416GURA_1415GURA_2196
GSUL243231 GSU_1077GSU_1076GSU_1074GSU_1075GSU_1463
GMET269799 GMET_0746GMET_0745GMET_2532GMET_0743GMET_0744GMET_1357
GFOR411154 GFO_0168GFO_0181GFO_3323GFO_0072GFO_3090
FTUL458234 FTA_1136FTA_0982FTA_0979FTA_0980FTA_0024
FTUL418136 FTW_0920FTW_1070FTW_1073FTW_1072FTW_1997
FTUL401614 FTN_0891FTN_1025FTN_1028FTN_1027FTN_0129
FTUL393115 FTF1013CFTF0658FTF0655FTF0656FTF0007
FTUL393011 FTH_1052FTH_0911FTH_0908FTH_0909FTH_0020
FTUL351581 FTL_1077FTL_0932FTL_0929FTL_0930FTL_0020
FPHI484022 FPHI_1721FPHI_1568FPHI_1565FPHI_1566FPHI_0695
ESP42895 ENT638_2429ENT638_2430ENT638_2438ENT638_2432ENT638_2431ENT638_2434
EFER585054 EFER_1212EFER_1211EFER_1202EFER_1208EFER_1209EFER_1206
ECOL83334 ECS2570ECS2571ECS2580ECS2574ECS2573ECS2576
ECOL585397 ECED1_2065ECED1_2066ECED1_2139ECED1_2069ECED1_2068ECED1_2071
ECOL585057 ECIAI39_1189ECIAI39_1188ECIAI39_1179ECIAI39_1185ECIAI39_1186ECIAI39_1183
ECOL585056 ECUMN_2158ECUMN_2159ECUMN_2168ECUMN_2162ECUMN_2161ECUMN_2164
ECOL585055 EC55989_2039EC55989_2040EC55989_2049EC55989_2043EC55989_2042EC55989_2045
ECOL585035 ECS88_1917ECS88_1918ECS88_1928ECS88_1922ECS88_1921ECS88_1924
ECOL585034 ECIAI1_1947ECIAI1_1948ECIAI1_1957ECIAI1_1951ECIAI1_1950ECIAI1_1953
ECOL481805 ECOLC_1772ECOLC_1771ECOLC_1762ECOLC_1768ECOLC_1769ECOLC_1766
ECOL469008 ECBD_1778ECBD_1777ECBD_1768ECBD_1774ECBD_1775ECBD_1772
ECOL439855 ECSMS35_1326ECSMS35_1325ECSMS35_1316ECSMS35_1322ECSMS35_1323ECSMS35_1320
ECOL413997 ECB_01831ECB_01832ECB_01841ECB_01835ECB_01834ECB_01837
ECOL409438 ECSE_2036ECSE_2037ECSE_2105ECSE_2040ECSE_2039ECSE_2042
ECOL405955 APECO1_910APECO1_911APECO1_920APECO1_914APECO1_913APECO1_916
ECOL364106 UTI89_C2064UTI89_C2065UTI89_C2074UTI89_C2068UTI89_C2067UTI89_C2070
ECOL362663 ECP_1804ECP_1805ECP_1814ECP_1808ECP_1807ECP_1810
ECOL331111 ECE24377A_2090ECE24377A_2091ECE24377A_2101ECE24377A_2094ECE24377A_2093ECE24377A_2096
ECOL316407 ECK1861:JW1849:B1860ECK1862:JW1850:B1861ECK1871:JW1859:B1870ECK1865:JW1853:B1864ECK1864:JW1852:B1863ECK1867:JW1855:B1866
ECOL199310 C2274C2275C2284C2278C2277C2280
ECAR218491 ECA2491ECA2492ECA2511ECA2494ECA2493ECA2496
DRED349161 DRED_1662DRED_1661DRED_1658DRED_1660DRED_0757
DNOD246195 DNO_1176DNO_1177DNO_0481DNO_1179DNO_1178DNO_1118
DHAF138119 DSY2466DSY2467DSY2470DSY2468DSY2431
DDES207559 DDE_2322DDE_2323DDE_2325DDE_2324DDE_0012
DARO159087 DARO_4060DARO_4062DARO_4067DARO_4063DARO_0634
CVIO243365 CV_4215CV_4223CV_3123CV_4225CV_3740
CSAL290398 CSAL_1848CSAL_1847CSAL_2547CSAL_1845CSAL_1846CSAL_1844
CPSY167879 CPS_2117CPS_2116CPS_2112CPS_2115CPS_2114
CJAP155077 CJA_1031CJA_1030CJA_1807CJA_1028CJA_1029CJA_1027
CDIF272563 CD2805CD2806CD0795CD2807CD2739
CBUR434922 COXBU7E912_0418COXBU7E912_0420COXBU7E912_0422COXBU7E912_0421COXBU7E912_0423
CBUR360115 COXBURSA331_A1756COXBURSA331_A1754COXBURSA331_A1752COXBURSA331_A1753COXBURSA331_A1751
CBUR227377 CBU_1570CBU_1568CBU_1566CBU_1567CBU_1565
BVIE269482 BCEP1808_0653BCEP1808_0654BCEP1808_2379BCEP1808_0655BCEP1808_2831
BTHA271848 BTH_I1247BTH_I1248BTH_I1015BTH_I1249BTH_I0560
BSP36773 BCEP18194_A3774BCEP18194_A3775BCEP18194_A5621BCEP18194_A3776BCEP18194_A6052
BPSE320373 BURPS668_3366BURPS668_3365BURPS668_1231BURPS668_3364BURPS668_0675
BPSE320372 BURPS1710B_A3683BURPS1710B_A3682BURPS1710B_A1459BURPS1710B_A3681BURPS1710B_A0902
BPSE272560 BPSL2899BPSL2898BPSL1165BPSL2897BPSL0644
BPET94624 BPET0901BPET0904BPET3099BPET0905BPET4847
BPER257313 BP3421BP3418BP2308BP3417BP0709
BPAR257311 BPP3571BPP3568BPP2422BPP3567BPP0115
BMAL320389 BMA10247_2532BMA10247_2533BMA10247_0358BMA10247_2534BMA10247_2406
BMAL320388 BMASAVP1_A0266BMASAVP1_A0267BMASAVP1_A1075BMASAVP1_A0268BMASAVP1_A2752
BMAL243160 BMA_2353BMA_2354BMA_1884BMA_2355BMA_0193
BJAP224911 BLR1537BLR1536BLR7975BLR1534BLR1535
BCEN331272 BCEN2424_0688BCEN2424_0689BCEN2424_2294BCEN2424_0690BCEN2424_2725
BCEN331271 BCEN_0205BCEN_0206BCEN_1682BCEN_0207BCEN_2113
BBRO257310 BB4006BB4003BB1871BB4002BB0115
BAMB398577 BAMMC406_0607BAMMC406_0608BAMMC406_2210BAMMC406_0609BAMMC406_2643
BAMB339670 BAMB_0581BAMB_0582BAMB_2332BAMB_0583BAMB_2776
AVAR240292 AVA_1008AVA_2820AVA_1228AVA_0115AVA_0247
ASP76114 EBA3958EBA3959EBA3674EBA3657EBA4339
ASP62977 ACIAD2615ACIAD2614ACIAD2052ACIAD2041ACIAD0609
ASP62928 AZO0601AZO0602AZO0574AZO0571AZO3239
ASP232721 AJS_3694AJS_3700AJS_1898AJS_3658AJS_0874
ASAL382245 ASA_0736ASA_0735ASA_2846ASA_2843ASA_1283ASA_2844
APLE434271 APJL_0295APJL_0755APJL_1171APJL_1173APJL_1169
APLE416269 APL_0284APL_0283APL_0754APL_1151APL_1153APL_1149
AORE350688 CLOS_1725CLOS_1726CLOS_1778CLOS_1727CLOS_1709
AMET293826 AMET_2339AMET_2338AMET_2235AMET_2337AMET_2359
AMAR329726 AM1_4753AM1_2883AM1_1847AM1_5256AM1_4421
AHYD196024 AHA_3647AHA_3648AHA_1519AHA_1522AHA_1301AHA_1521
AFER243159 AFE_2962AFE_2963AFE_2965AFE_2964AFE_2968
AEHR187272 MLG_2777MLG_2494MLG_2492MLG_2493MLG_2665
ACEL351607 ACEL_1343ACEL_1344ACEL_1346ACEL_1345ACEL_1334
ABOR393595 ABO_0753ABO_0752ABO_0973ABO_0750ABO_0751ABO_0749
ABAU360910 BAV2780BAV2778BAV2207BAV2777BAV0115
AAVE397945 AAVE_4237AAVE_4240AAVE_3203AAVE_0833AAVE_3637


Organism features enriched in list (features available for 206 out of the 216 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 8.033e-61592
Arrangment:Clusters 0.0051466117
Disease:Bubonic_plague 0.001855666
Endospores:No 8.337e-1238211
GC_Content_Range4:0-40 1.569e-2026213
GC_Content_Range4:40-60 3.883e-11116224
GC_Content_Range4:60-100 0.003170564145
GC_Content_Range7:0-30 1.246e-8147
GC_Content_Range7:30-40 1.108e-1125166
GC_Content_Range7:50-60 1.213e-1067107
GC_Content_Range7:60-70 0.000510263134
Genome_Size_Range5:0-2 1.106e-1912155
Genome_Size_Range5:2-4 0.005013657197
Genome_Size_Range5:4-6 2.982e-14106184
Genome_Size_Range5:6-10 6.262e-63147
Genome_Size_Range9:1-2 6.099e-1412128
Genome_Size_Range9:2-3 0.006962032120
Genome_Size_Range9:4-5 0.00004355196
Genome_Size_Range9:5-6 1.143e-85588
Genome_Size_Range9:6-8 0.00001442638
Gram_Stain:Gram_Neg 1.940e-25175333
Gram_Stain:Gram_Pos 1.477e-2010150
Habitat:Multiple 0.005734775178
Motility:No 3.716e-729151
Motility:Yes 4.640e-8125267
Optimal_temp.:- 0.0021028106257
Optimal_temp.:35-37 1.040e-61313
Optimal_temp.:37 0.005461627106
Oxygen_Req:Aerobic 0.007238877185
Oxygen_Req:Anaerobic 0.000190821102
Oxygen_Req:Facultative 0.001092887201
Pathogenic_in:No 0.001297464226
Pathogenic_in:Plant 0.00230131115
Shape:Coccus 7.216e-8982
Shape:Filament 0.008487067
Shape:Rod 1.049e-11160347
Shape:Spiral 0.0002639334
Temp._range:Hyperthermophilic 0.0004617123
Temp._range:Psychrophilic 0.001311389



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 86
Effective number of orgs (counting one per cluster within 468 clusters): 78

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PTOR263820 ncbi Picrophilus torridus DSM 97900
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
BXEN266265 ncbi Burkholderia xenovorans LB4000
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  RUVB   RUVA   G7020   EG11137   EG10925   EG10097   
WPIP80849 WB_1066
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSOL273057
SMAR399550
SACI330779
RSAL288705 RSAL33209_2002
PTOR263820
PMAR146891 A9601_18981
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244 OTBS_1638
NSEN222891 NSE_0955
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748 MMOB1910
MMAZ192952
MMAR444158
MMAR426368 MMARC7_1197
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272 MART0245
MAEO419665
MACE188937
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
ERUM302409 ERGA_CDS_00030
ERUM254945 ERWE_CDS_00030
ECHA205920 ECH_0028
CSUL444179
CPEL335992 SAR11_0592
CMAQ397948
CKOR374847
CBLO291272 BPEN_467
CBLO203907 BFL452
BXEN266265
BSP107806 BU316
BHER314723 BH0025
BGAR290434 BG0025
BBUR224326 BB_0025
BAPH372461
BAPH198804 BUSG306
BAFZ390236 BAPKO_0024
AYEL322098
AURANTIMONAS
APER272557
ALAI441768
AFUL224325


Organism features enriched in list (features available for 81 out of the 86 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.003324359
Arrangment:Chains 0.0000456292
Arrangment:Pairs 0.00308267112
Arrangment:Singles 0.001272452286
Endospores:No 1.257e-1157211
GC_Content_Range4:0-40 0.000032746213
GC_Content_Range4:60-100 0.00019578145
GC_Content_Range7:0-30 1.197e-132747
GC_Content_Range7:60-70 0.00073898134
Genome_Size_Range5:0-2 2.834e-2058155
Genome_Size_Range5:2-4 0.005682818197
Genome_Size_Range5:4-6 4.410e-104184
Genome_Size_Range5:6-10 0.0053746147
Genome_Size_Range9:0-1 1.063e-172327
Genome_Size_Range9:1-2 1.955e-635128
Genome_Size_Range9:3-4 0.0019539377
Genome_Size_Range9:4-5 0.0001488396
Genome_Size_Range9:5-6 0.0000100188
Gram_Stain:Gram_Neg 6.203e-628333
Gram_Stain:Gram_Pos 2.517e-83150
Habitat:Aquatic 0.00069882391
Habitat:Multiple 1.379e-94178
Habitat:Specialized 6.426e-72153
Optimal_temp.:100 0.002596833
Optimal_temp.:35-40 0.002596833
Optimal_temp.:85 0.000349244
Oxygen_Req:Aerobic 0.001952715185
Oxygen_Req:Anaerobic 9.675e-629102
Pathogenic_in:Animal 0.0075298366
Pathogenic_in:Human 0.000030614213
Pathogenic_in:No 0.003503142226
Pathogenic_in:Ruminant 0.002596833
Salinity:Extreme_halophilic 0.000735557
Shape:Irregular_coccus 4.439e-121517
Shape:Pleomorphic 0.001702558
Shape:Rod 3.456e-1516347
Shape:Sphere 3.264e-121619
Temp._range:Hyperthermophilic 2.727e-111723
Temp._range:Mesophilic 1.027e-747473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181680.6535
GLYCOCAT-PWY (glycogen degradation I)2461710.5914
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001890.5737
PWY-4041 (γ-glutamyl cycle)2791770.5444
PWY-1269 (CMP-KDO biosynthesis I)3251910.5288
PWY-5918 (heme biosynthesis I)2721720.5283
AST-PWY (arginine degradation II (AST pathway))1201030.5251
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911380.5250
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861740.5065
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951370.5047
PWY-5913 (TCA cycle variation IV)3011790.5038
PWY-5386 (methylglyoxal degradation I)3051800.5010
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911750.5010
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391910.4975
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901740.4967
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961760.4955
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481930.4914
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761250.4793
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251460.4774
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982040.4635
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551550.4567
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81730.4504
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831240.4484
TYRFUMCAT-PWY (tyrosine degradation I)1841240.4451
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291790.4387
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222070.4378
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911260.4373
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491060.4296
GLUCONSUPER-PWY (D-gluconate degradation)2291390.4169
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162010.4065
PWY-5148 (acyl-CoA hydrolysis)2271360.4015



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  RUVA   G7020   EG11137   EG10925   EG10097   
RUVB0.9999870.9985560.9998120.999940.999599
RUVA0.9985460.9998190.9999620.999577
G70200.998670.9985330.999058
EG111370.9999270.999573
EG109250.999499
EG10097



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PAIRWISE BLAST SCORES:

  RUVB   RUVA   G7020   EG11137   EG10925   EG10097   
RUVB0.0f0-----
RUVA-0.0f0----
G7020--0.0f0---
EG11137---0.0f0--
EG10925----0.0f0-
EG10097-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- RUVABC-CPLX (resolvasome) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9985 RUVA (ruvA) EG10923-MONOMER (branch migration of Holliday structures; repair)
   *in cand* 0.9996 0.9986 RUVB (ruvB) EG10924-MONOMER (branch migration of Holliday structures; repair helicase)
   *in cand* 0.9996 0.9985 EG10925 (ruvC) EG10925-MONOMER (Holliday junction nuclease; resolution of structures; repair)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9991 EG10097 (aspS) ASPS-MONOMER (aspartyl-tRNA synthetase)
   *in cand* 0.9996 0.9987 EG11137 (yebC) EG11137-MONOMER (conserved protein)
   *in cand* 0.9989 0.9985 G7020 (cmoA) G7020-MONOMER (predicted methyltransferase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10097 EG10925 EG11137 (centered at EG11137)
RUVA RUVB (centered at RUVA)
G7020 (centered at G7020)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  RUVB   RUVA   G7020   EG11137   EG10925   EG10097   
415/623411/623147/623417/623425/623406/623
AAEO224324:0:Tyes---0-76
AAUR290340:2:Tyes---10-
AAVE397945:0:Tyes33463349-233402756
ABAC204669:0:Tyes24432628-01502-
ABAU360910:0:Tyes26702668-209526670
ABOR393595:0:Tyes43231120
ABUT367737:0:Tyes-01091-158832
ACAU438753:0:Tyes95-03-
ACEL351607:0:Tyes910-12110
ACRY349163:8:Tyes01-32-
ADEH290397:0:Tyes-1--01597
AEHR187272:0:Tyes2852-01173
AFER243159:0:Tyes01-326
AHYD196024:0:Tyes226222632152180217
AMAR234826:0:Tyes---0437-
AMAR329726:9:Tyes28821024-033812551
AMET293826:0:Tyes101100-099121
ANAE240017:0:Tyes-27-29-0
AORE350688:0:Tyes1617-70180
APHA212042:0:Tyes---4360-
APLE416269:0:Tyes10465866868864
APLE434271:0:Tno0-434854856852
ASAL382245:5:Tyes10202820255272026
ASP1667:3:Tyes---10-
ASP232721:2:Tyes27302736-98226940
ASP62928:0:Tyes3031-302719
ASP62977:0:Tyes18811880-137213640
ASP76114:2:Tyes182183-80404
AVAR240292:3:Tyes8992717-11210133
BABO262698:1:Tno01-152-
BAFZ390236:2:Fyes---0--
BAMB339670:3:Tno01-179922248
BAMB398577:3:Tno01-162822064
BAMY326423:0:Tyes1819---0
BANT260799:0:Tno1718---0
BANT261594:2:Tno1819---0
BANT568206:2:Tyes1718---0
BANT592021:2:Tno1718---0
BAPH198804:0:Tyes-----0
BBAC264462:0:Tyes-0--1772
BBAC360095:0:Tyes0--142-
BBRO257310:0:Tyes39233920-177339190
BBUR224326:21:Fno---0--
BCAN483179:1:Tno01-142-
BCEN331271:2:Tno01-149921933
BCEN331272:3:Tyes01-160422034
BCER226900:1:Tyes1718---0
BCER288681:0:Tno1920---0
BCER315749:1:Tyes1819---0
BCER405917:1:Tyes2021---0
BCER572264:1:Tno1718---0
BCIC186490:0:Tyes01--23
BCLA66692:0:Tyes102543--23
BFRA272559:1:Tyes03269--28912247
BFRA295405:0:Tno03574--31392243
BGAR290434:2:Fyes---0--
BHAL272558:0:Tyes-0---28
BHEN283166:0:Tyes7--09-
BHER314723:0:Fyes---0--
BJAP224911:0:Fyes32647601-
BLIC279010:0:Tyes1819-28-0
BLON206672:0:Tyes-2-01-
BMAL243160:1:Tno19251926-149519270
BMAL320388:1:Tno01-79622431
BMAL320389:1:Tyes21242125-021261998
BMEL224914:1:Tno1312-011-
BMEL359391:1:Tno01-152-
BOVI236:1:Tyes01-142-
BPAR257311:0:Tno32983295-221232940
BPER257313:0:Tyes24522449-143024480
BPET94624:0:Tyes03-221043985
BPSE272560:1:Tyes22702269-52122680
BPSE320372:1:Tno26572656-55426550
BPSE320373:1:Tno25912590-54325890
BPUM315750:0:Tyes1718---0
BQUI283165:0:Tyes6--08-
BSP107806:2:Tyes-----0
BSP36773:2:Tyes01-188522320
BSP376:0:Tyes42-01-
BSUB:0:Tyes2021-29-0
BSUI204722:1:Tyes01-152-
BSUI470137:0:Tno01-142-
BTHA271848:1:Tno678679-4536800
BTHE226186:0:Tyes24651132--8110
BTHU281309:1:Tno1718---0
BTHU412694:1:Tno1516---0
BTRI382640:1:Tyes9--011-
BTUR314724:0:Fyes---10-
BVIE269482:7:Tyes01-171322157
BWEI315730:4:Tyes1819---0
CABO218497:0:Tyes-1--0-
CACE272562:1:Tyes15--25-0
CAULO:0:Tyes0--72-
CBEI290402:0:Tyes10-2628-15
CBLO203907:0:Tyes-----0
CBLO291272:0:Tno-----0
CBOT36826:1:Tno1617-19-0
CBOT441770:0:Tyes1617-19-0
CBOT441771:0:Tno1617-19-0
CBOT441772:1:Tno1617-19-0
CBOT498213:1:Tno1617-19-0
CBOT508765:1:Tyes15--0-28
CBOT515621:2:Tyes1617-19-0
CBOT536232:0:Tno1617-19-0
CBUR227377:1:Tyes53-120
CBUR360115:1:Tno53-120
CBUR434922:2:Tno02-435
CCAV227941:1:Tyes-1-500-
CCHL340177:0:Tyes-299-10-
CCON360104:2:Tyes-0249-1004293
CCUR360105:0:Tyes-331123-14130
CDES477974:0:Tyes459460--4610
CDIF272563:1:Tyes20492050-020511982
CDIP257309:0:Tyes-0-21-
CEFF196164:0:Fyes-0-21-
CFEL264202:1:Tyes-0--1-
CFET360106:0:Tyes--0-68787
CGLU196627:0:Tyes01-32-
CHOM360107:1:Tyes-269698-14510
CHUT269798:0:Tyes3410--212782
CHYD246194:0:Tyes0--32663
CJAP155077:0:Tyes43761120
CJEI306537:0:Tyes01-32-
CJEJ192222:0:Tyes--0-111650
CJEJ195099:0:Tno--0-116249
CJEJ354242:2:Tyes--0-106848
CJEJ360109:0:Tyes--0-954259
CJEJ407148:0:Tno--0-111047
CKLU431943:1:Tyes18--22-0
CMET456442:0:Tyes-1--0-
CMIC31964:2:Tyes---01-
CMIC443906:2:Tyes---10-
CMUR243161:1:Tyes-45-046-
CNOV386415:0:Tyes14--0-30
CPEL335992:0:Tyes---0--
CPER195102:1:Tyes1415-21-0
CPER195103:0:Tno1516-22-0
CPER289380:3:Tyes1516-23-0
CPHY357809:0:Tyes774773-1933-0
CPNE115711:1:Tyes-1-490-
CPNE115713:0:Tno-50-051-
CPNE138677:0:Tno-52-053-
CPNE182082:0:Tno-55-056-
CPRO264201:0:Fyes-1-13390375
CPSY167879:0:Tyes540-32
CRUT413404:0:Tyes--5030-2
CSAL290398:0:Tyes43715120
CSP501479:8:Fyes01-8752-
CSP78:2:Tyes65-04-
CTEP194439:0:Tyes-0-13821381-
CTET212717:0:Tyes1415-17-0
CTRA471472:0:Tyes-49-050-
CTRA471473:0:Tno-49-050-
CVES412965:0:Tyes3130-17-19
CVIO243365:0:Tyes11391147-01149643
DARO159087:0:Tyes34473449-345434500
DDES207559:0:Tyes23452346-234823470
DETH243164:0:Tyes1620-21-
DGEO319795:1:Tyes-398-18580-
DHAF138119:0:Tyes3536-39370
DNOD246195:0:Tyes6716720674673613
DOLE96561:0:Tyes---01858309
DPSY177439:2:Tyes--25932408-0
DRAD243230:3:Tyes-828-20730-
DRED349161:0:Tyes908907-9049060
DSHI398580:5:Tyes21-16790-
DSP216389:0:Tyes1620-21-
DSP255470:0:Tno1620-21-
DVUL882:1:Tyes0--431108
ECAN269484:0:Tyes---3550-
ECAR218491:0:Tyes0119325
ECHA205920:0:Tyes----0-
ECOL199310:0:Tno0110436
ECOL316407:0:Tno0110436
ECOL331111:6:Tno0111436
ECOL362663:0:Tno0110436
ECOL364106:1:Tno0110436
ECOL405955:2:Tyes0110436
ECOL409438:6:Tyes0170436
ECOL413997:0:Tno0110436
ECOL439855:4:Tno1090674
ECOL469008:0:Tno1090674
ECOL481805:0:Tno1090674
ECOL585034:0:Tno0110436
ECOL585035:0:Tno0110436
ECOL585055:0:Tno0110436
ECOL585056:2:Tno0110436
ECOL585057:0:Tno1090674
ECOL585397:0:Tno0170436
ECOL83334:0:Tno0110436
ECOLI:0:Tno0111547
ECOO157:0:Tno--7103
EFAE226185:3:Tyes10-544-1783
EFER585054:1:Tyes1090674
ELIT314225:0:Tyes03-828829-
ERUM254945:0:Tyes----0-
ERUM302409:0:Tno----0-
ESP42895:1:Tyes019325
FALN326424:0:Tyes---01-
FJOH376686:0:Tyes2682783258-0-
FMAG334413:1:Tyes0--78243
FNOD381764:0:Tyes-0-321936-
FNUC190304:0:Tyes1685--0682767
FPHI484022:1:Tyes1062910-9079080
FRANT:0:Tno---6036040
FSP106370:0:Tyes---01-
FSP1855:0:Tyes---10-
FSUC59374:0:Tyes-3044-6727550
FTUL351581:0:Tno938810-8078080
FTUL393011:0:Tno858739-7367370
FTUL393115:0:Tyes928596-5945950
FTUL401614:0:Tyes755888-8918900
FTUL418136:0:Tno0125-128127874
FTUL458234:0:Tno907792-7897900
GBET391165:0:Tyes42-01-
GFOR411154:0:Tyes96109-325103018
GKAU235909:1:Tyes1920-22-0
GMET269799:1:Tyes32179501613
GOXY290633:5:Tyes3--01-
GSUL243231:0:Tyes32-01385
GTHE420246:1:Tyes01-3--
GURA351605:0:Tyes01-32778
GVIO251221:0:Tyes-968-58713900
HACI382638:1:Tyes-7560-750369
HARS204773:0:Tyes21-28202439
HAUR316274:2:Tyes022016947382480-
HCHE349521:0:Tyes256825690257225702573
HDUC233412:0:Tyes10141015590205
HHAL349124:0:Tyes32-0117
HHEP235279:0:Tyes--745-0694
HINF281310:0:Tyes017325
HINF374930:0:Tyes1312010112
HINF71421:0:Tno017325
HMOD498761:0:Tyes54-0324
HNEP81032:0:Tyes2--160-
HPY:0:Tno-4930-488232
HPYL357544:1:Tyes-267418-2640
HPYL85963:0:Tno-251429-2470
HSOM205914:1:Tyes10957242243958
HSOM228400:0:Tno1073016391638729
ILOI283942:0:Tyes016324
JSP290400:1:Tyes2--24450-
JSP375286:0:Tyes21-23802827
KPNE272620:2:Tyes019325
KRAD266940:2:Fyes-3-01-
LACI272621:0:Tyes10-342-533
LBIF355278:2:Tyes---031041967
LBIF456481:2:Tno---032192024
LBOR355276:1:Tyes---116811670
LBOR355277:1:Tno---01573
LBRE387344:2:Tyes458459-427-0
LCAS321967:1:Tyes0--248-736
LCHO395495:0:Tyes34523451-144203513
LDEL321956:0:Tyes746747-0-180
LDEL390333:0:Tyes683684-0-181
LGAS324831:0:Tyes10-820-430
LHEL405566:0:Tyes-0-316--
LINN272626:1:Tno1314-16-0
LINT189518:1:Tyes---03967
LINT267671:1:Tno---7677660
LINT363253:3:Tyes917--10717
LJOH257314:0:Tyes10-275-709
LLAC272622:5:Tyes272273---0
LLAC272623:0:Tyes241242---0
LMES203120:1:Tyes---149-0
LMON169963:0:Tno1314-16-0
LMON265669:0:Tyes1314-16-0
LPLA220668:0:Tyes---251-0
LPNE272624:0:Tno2902-01192
LPNE297245:1:Fno1982-01299
LPNE297246:1:Fyes2862-01186
LPNE400673:0:Tno2852-01180
LREU557436:0:Tyes10-25-223
LSAK314315:0:Tyes10-977-531
LSPH444177:1:Tyes-15250--1492
LWEL386043:0:Tyes1314-16-0
LXYL281090:0:Tyes---01-
MABS561007:1:Tyes17--23-0
MAER449447:0:Tyes43030-331-2721
MAQU351348:2:Tyes011049-23
MART243272:0:Tyes---0--
MAVI243243:0:Tyes2627-34-0
MBOV233413:0:Tno01-122-
MBOV410289:0:Tno01-132-
MCAP243233:0:Tyes32104301530
MEXT419610:0:Tyes3819--200-
MFLA265072:0:Tyes09-111038
MGIL350054:3:Tyes39--43410
MHUN323259:0:Tyes-5950-594-
MLEP272631:0:Tyes32-0--
MLOT266835:2:Tyes01-324-
MMAG342108:0:Tyes02404-3-
MMAR394221:0:Tyes0--112-
MMAR426368:0:Tyes--0---
MMOB267748:0:Tyes---0--
MPET420662:1:Tyes02902-1010155742
MSME246196:0:Tyes5--0363
MSP164756:1:Tno1615-014-
MSP164757:0:Tno1615-014-
MSP189918:2:Tyes1615-014-
MSP266779:3:Tyes02-163-
MSP400668:0:Tyes32--10
MSP409:2:Tyes2320-55061391-
MSUC221988:0:Tyes760452
MTBCDC:0:Tno22--33240
MTBRV:0:Tno20--31220
MTHE264732:0:Tyes24--28260
MTUB336982:0:Tno20--30220
MTUB419947:0:Tyes20--32220
MVAN350058:0:Tyes5--0344
MXAN246197:0:Tyes328432870328932883012
NARO279238:0:Tyes43-02-
NEUR228410:0:Tyes32-012077
NEUT335283:2:Tyes32-01330
NFAR247156:2:Tyes-47-53480
NGON242231:0:Tyes5641440-103401216
NHAM323097:2:Tyes01-42-
NMEN122586:0:Tno9440-13311109192
NMEN122587:0:Tyes0795-475202595
NMEN272831:0:Tno7940-11409631244
NMEN374833:0:Tno0744-420199544
NMUL323848:3:Tyes20962097-209920980
NOCE323261:1:Tyes32263701163
NSEN222891:0:Tyes----0-
NSP103690:6:Tyes25430-394019402080
NSP35761:1:Tyes---02-
NSP387092:0:Tyes-54457501313218
NWIN323098:0:Tyes01-52-
OANT439375:5:Tyes1312322011-
OCAR504832:0:Tyes02-63-
OIHE221109:0:Tyes1718-19-0
OTSU357244:0:Fyes----0-
PACN267747:0:Tyes---0118
PAER208963:0:Tyes01206324
PAER208964:0:Tno1971960194195193
PARC259536:0:Tyes111012602380504
PATL342610:0:Tyes011093-24
PCAR338963:0:Tyes22782277022752276969
PCRY335284:1:Tyes141315658040510
PDIS435591:0:Tyes-1251--23920
PENT384676:0:Tyes01276324
PFLU205922:0:Tyes01175324
PFLU216595:1:Tyes369136920369436933695
PFLU220664:0:Tyes01162324
PGIN242619:0:Tyes293582--10190
PHAL326442:1:Tyes0173-266
PING357804:0:Tyes21200-181
PINT246198:0:Tyes----0-
PINT246198:1:Tyes0----1125
PLUM243265:0:Fyes980674
PLUT319225:0:Tyes-116-10-
PMAR146891:0:Tyes-----0
PMAR167539:0:Tyes-0--3981120
PMAR167540:0:Tyes----0653
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