CANDIDATE ID: 497

CANDIDATE ID: 497

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9936487e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.6666667e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7506 (ygfT) (b2887)
   Products of gene:
     - G7506-MONOMER (fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit)

- EG12113 (hofQ) (b3391)
   Products of gene:
     - EG12113-MONOMER (protein involved in utilization of DNA as a carbon source)

- EG10403 (gltB) (b3212)
   Products of gene:
     - GLUSYNLARGE-MONOMER (glutamate synthase, large subunit)
     - GLUTAMATESYN-DIMER (glutamate synthase)
     - GLUTAMATESYN-CPLX (glutamate synthase)
       Reactions:
        L-glutamate + NADP+ + H2O  =  2-oxoglutarate + ammonia + NADPH + 2 H+
         In pathways
         PWY-5505 (PWY-5505)
         GLUTSYNIII-PWY (glutamate biosynthesis III)
         PWY-5913 (PWY-5913)
         PWY490-3 (PWY490-3)
         PWY-5675 (PWY-5675)
        L-glutamine + 2-oxoglutarate + NADPH + H+  ->  2 L-glutamate + NADP+
         In pathways
         AMMASSIM-PWY (superpathway of glutamate biosynthesis)
         PWY-5505 (PWY-5505)
         GLUTSYN-PWY (glutamate biosynthesis I)
         GLUTAMINEFUM-PWY (GLUTAMINEFUM-PWY)

- EG10082 (aroL) (b0388)
   Products of gene:
     - AROL-MONOMER (shikimate kinase II)
       Reactions:
        shikimate + ATP  ->  shikimate-3-phosphate + ADP + 2 H+
         In pathways
         PWY-6165 (PWY-6165)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PWY-6163 (PWY-6163)
         ARO-PWY (chorismate biosynthesis I)

- EG10081 (aroK) (b3390)
   Products of gene:
     - AROK-MONOMER (shikimate kinase I)
       Reactions:
        shikimate + ATP  ->  shikimate-3-phosphate + ADP + 2 H+
         In pathways
         PWY-6165 (PWY-6165)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PWY-6163 (PWY-6163)
         ARO-PWY (chorismate biosynthesis I)

- EG10074 (aroB) (b3389)
   Products of gene:
     - AROB-MONOMER (3-dehydroquinate synthase)
       Reactions:
        3-deoxy-D-arabino-heptulosonate-7-phosphate  ->  phosphate + 3-dehydroquinate
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PWY-6164 (PWY-6164)
         ARO-PWY (chorismate biosynthesis I)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 201
Effective number of orgs (counting one per cluster within 468 clusters): 146

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP28240 Thermotoga sp.5
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TMAR243274 ncbi Thermotoga maritima MSB85
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSP644076 Silicibacter sp. TrichCH4B5
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-46
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SALA317655 ncbi Sphingopyxis alaskensis RB22566
SACI56780 ncbi Syntrophus aciditrophicus SB5
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99415
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSP101510 ncbi Rhodococcus jostii RHA15
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA536
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
RDEN375451 ncbi Roseobacter denitrificans OCh 1145
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PSP117 Pirellula sp.5
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUT319225 ncbi Chlorobium luteolum DSM 2735
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NHAM323097 ncbi Nitrobacter hamburgensis X145
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC15
MPET420662 ncbi Methylibium petroleiphilum PM16
MMAR394221 ncbi Maricaulis maris MCS105
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA15
MCAP243233 ncbi Methylococcus capsulatus Bath6
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HNEP81032 Hyphomonas neptunium5
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HHAL349124 ncbi Halorhodospira halophila SL16
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GOXY290633 ncbi Gluconobacter oxydans 621H5
GMET269799 ncbi Geobacter metallireducens GS-156
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S855
ESP42895 Enterobacter sp.6
ELIT314225 ncbi Erythrobacter litoralis HTCC25945
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DRED349161 ncbi Desulfotomaculum reducens MI-15
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP501479 Citreicella sp. SE456
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus6
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ACRY349163 ncbi Acidiphilium cryptum JF-56
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N5
AAVE397945 ncbi Acidovorax citrulli AAC00-15
AAEO224324 ncbi Aquifex aeolicus VF55


Names of the homologs of the genes in the group in each of these orgs
  G7506   EG12113   EG10403   EG10082   EG10081   EG10074   
YPSE349747 YPSIP31758_3684YPSIP31758_3967YPSIP31758_0466YPSIP31758_3143YPSIP31758_3966YPSIP31758_3965
YPSE273123 YPTB3503YPTB3751YPTB3502YPTB0911YPTB3750YPTB3749
YPES386656 YPDSF_3631YPDSF_0077YPDSF_0340YPDSF_2844YPDSF_0078YPDSF_0079
YPES377628 YPN_3328YPN_3915YPN_3439YPN_0878YPN_3914YPN_3913
YPES360102 YPA_3940YPA_3319YPA_3746YPA_2707YPA_3318YPA_3317
YPES349746 YPANGOLA_A1129YPANGOLA_A3728YPANGOLA_A1128YPANGOLA_A3293YPANGOLA_A3727YPANGOLA_A3726
YPES214092 YPO3558YPO0150YPO3557YPO3215YPO0151YPO0152
YPES187410 Y0599Y3932Y0128Y0972Y3933Y3934
YENT393305 YE3736YE3976YE3735YE3188YE3975YE3974
XORY360094 XOOORF_0173XOOORF_4188XOOORF_0172XOOORF_4081XOOORF_4081XOOORF_4082
XORY342109 XOO0158XOO1058XOO0157XOO1144XOO1144XOO1143
XORY291331 XOO0178XOO1161XOO0177XOO1244XOO1244XOO1243
XFAS405440 XFASM12_2257XFASM12_1856XFASM12_2258XFASM12_0692XFASM12_0692XFASM12_0691
XFAS183190 PD_2062PD_1691PD_2063PD_0582PD_0582PD_0581
XFAS160492 XF2709XF0373XF2710XF1335XF1334
XCAM487884 XCC-B100_0036XCC-B100_0958XCC-B100_0037XCC-B100_1315XCC-B100_1315XCC-B100_1314
XCAM316273 XCAORF_0040XCAORF_3568XCAORF_0041XCAORF_3217XCAORF_3217XCAORF_3218
XCAM314565 XC_0031XC_0937XC_0032XC_1269XC_1269XC_1268
XCAM190485 XCC0031XCC3228XCC0032XCC2841XCC2841XCC2842
XAXO190486 XAC0032XAC3381XAC0033XAC3010XAC3010XAC3011
VVUL216895 VV1_0556VV1_1381VV1_0555VV1_1382VV1_1382VV1_1383
VVUL196600 VV0638VV2990VV0641VV2989VV2989VV2988
VPAR223926 VP0481VP2746VP0484VP2745VP2745VP2744
VFIS312309 VF2293VF2124VF2292VF2292VF2291
VEIS391735 VEIS_0018VEIS_2395VEIS_0013VEIS_0013VEIS_0016
VCHO345073 VC0395_A1955VC0395_A2207VC0395_A1954VC0395_A2206VC0395_A2206VC0395_A2205
VCHO VC2377VC2630VC2376VC2629VC2629VC2628
TTUR377629 TERTU_3575TERTU_3581TERTU_3576TERTU_3580TERTU_3580TERTU_3579
TTEN273068 TTE0567TTE0819TTE1275TTE1275TTE1011
TSP28240 TRQ2_1304TRQ2_0859TRQ2_0537TRQ2_0587TRQ2_0587
TSP1755 TETH514_0651TETH514_0559TETH514_1517TETH514_1517TETH514_1423
TPSE340099 TETH39_1730TETH39_1660TETH39_1080TETH39_1080TETH39_0982
TMAR243274 TM_1640TM_0088TM_0397TM_0348TM_0348
TDEN292415 TBD_2768TBD_0206TBD_2767TBD_0207TBD_0207TBD_0315
TCRU317025 TCR_1958TCR_0250TCR_1957TCR_2137TCR_2137TCR_2136
STYP99287 STM3331STM3488STM3330STM0388STM3487STM3486
SSP94122 SHEWANA3_3051SHEWANA3_3895SHEWANA3_3050SHEWANA3_3894SHEWANA3_3894SHEWANA3_3893
SSP644076 SCH4B_3036SCH4B_3035SCH4B_2210SCH4B_2210SCH4B_2209
SSON300269 SSO_3039SSO_3522SSO_3360SSO_0364SSO_3521SSO_3520
SSED425104 SSED_1125SSED_4266SSED_1126SSED_4265SSED_4265SSED_4264
SPRO399741 SPRO_4345SPRO_4606SPRO_4344SPRO_1018SPRO_4605SPRO_4604
SPEA398579 SPEA_1012SPEA_0237SPEA_1013SPEA_0238SPEA_0238SPEA_0239
SONE211586 SO_1324SO_0285SO_1325SO_0286SO_0286SO_0287
SMEL266834 SMC04026SMA0163SMC04028SMC00695SMC00696
SMED366394 SMED_2710SMED_5132SMED_2711SMED_2565SMED_2564
SLOI323850 SHEW_1031SHEW_0212SHEW_1032SHEW_0213SHEW_0213SHEW_0214
SLAC55218 SL1157_1035SL1157_1033SL1157_3135SL1157_3135SL1157_3134
SHIGELLA GLTDHOFQGLTBAROLAROKAROB
SHAL458817 SHAL_1060SHAL_4083SHAL_1061SHAL_4082SHAL_4082SHAL_4081
SFLE373384 SFV_3243SFV_3396SFV_3242SFV_0353SFV_3395SFV_3394
SFLE198214 AAN44718.1AAN44871.1AAN44717.1AAN41983.1AAN44870.1AAN44869.1
SENT454169 SEHA_C3629SEHA_C3794SEHA_C3628SEHA_C0486SEHA_C3793SEHA_C3792
SENT321314 SCH_3269SCH_3420SCH_3268SCH_0429SCH_3419SCH_3418
SENT295319 SPA3199SPA3353SPA3198SPA2335SPA3352SPA3351
SENT220341 STY3511STY4308STY3510STY0421STY4309STY4310
SENT209261 T3248T4018T3247T2476T4019T4020
SDYS300267 SDY_3394SDY_3393SDY_0355SDY_3689SDY_3690
SDEN318161 SDEN_2791SDEN_0260SDEN_2790SDEN_0261SDEN_0261SDEN_0262
SDEG203122 SDE_2682SDE_2687SDE_2683SDE_2686SDE_2686SDE_2685
SCO SCO1977SCO2026SCO1495SCO1495SCO1494
SBOY300268 SBO_3169SBO_3378SBO_3170SBO_0283SBO_3377SBO_3376
SBAL402882 SHEW185_1221SHEW185_4085SHEW185_1222SHEW185_4084SHEW185_4084SHEW185_4083
SBAL399599 SBAL195_1254SBAL195_4203SBAL195_1255SBAL195_4202SBAL195_4202SBAL195_4201
SALA317655 SALA_2138SALA_0315SALA_2140SALA_1799SALA_1799SALA_1800
SACI56780 SYN_00606SYN_01772SYN_01935SYN_01935SYN_01939
RXYL266117 RXYL_0342RXYL_0341RXYL_1460RXYL_1460RXYL_1459
RSPH349102 RSPH17025_2778RSPH17025_0305RSPH17025_2781RSPH17025_1529RSPH17025_1529RSPH17025_1528
RSPH349101 RSPH17029_2810RSPH17029_0557RSPH17029_2807RSPH17029_1479RSPH17029_1479RSPH17029_1478
RSPH272943 RSP_1149RSP_1909RSP_1146RSP_2817RSP_2817RSP_2818
RSP101510 RHA1_RO01008RHA1_RO03717RHA1_RO07141RHA1_RO07141RHA1_RO07142
RSOL267608 RSC2964RSC2971RSC2965RSC2970RSC2970RSC2969
RRUB269796 RRU_A0018RRU_A0019RRU_A3740RRU_A3740RRU_A3741
RPOM246200 SPO_3770SPO_3768SPO_1634SPO_1634SPO_1635
RPAL316057 RPD_0876RPD_0875RPD_0877RPD_0294RPD_0293
RPAL316056 RPC_1006RPC_0761RPC_0098RPC_0532RPC_0533
RPAL316055 RPE_2602RPE_2669RPE_0683RPE_0475RPE_0143RPE_0144
RPAL258594 RPA0678RPA0891RPA0504RPA0504RPA0503
RMET266264 RMET_3262RMET_3268RMET_3263RMET_4010RMET_4010RMET_3266
RFER338969 RFER_2934RFER_2923RFER_2933RFER_2925RFER_2925RFER_2926
REUT381666 H16_A3430H16_A3436H16_A3431H16_A3435H16_A3435H16_A3434
REUT264198 REUT_A3125REUT_A3131REUT_A3126REUT_A3130REUT_A3130REUT_A3129
RDEN375451 RD1_0063RD1_0060RD1_3088RD1_3088RD1_3087
PTHE370438 PTH_1181PTH_0734PTH_1131PTH_1131PTH_1132
PSYR223283 PSPTO_5121PSPTO_5128PSPTO_5123PSPTO_5127PSPTO_5127PSPTO_5126
PSYR205918 PSYR_0412PSYR_0407PSYR_0411PSYR_0408PSYR_0408PSYR_0409
PSTU379731 PST_0562PST_0557PST_0561PST_0558PST_0558PST_0559
PSP56811 PSYCPRWF_0404PSYCPRWF_0399PSYCPRWF_0403PSYCPRWF_0400PSYCPRWF_0400PSYCPRWF_0401
PSP312153 PNUC_0095PNUC_0090PNUC_0094PNUC_0089PNUC_0089PNUC_0088
PSP296591 BPRO_0792BPRO_0785BPRO_0791BPRO_0786BPRO_0786BPRO_0787
PSP117 RB13291RB5654RB3471RB3471RB1898
PPUT76869 PPUTGB1_5125PPUTGB1_5130PPUTGB1_5126PPUTGB1_5129PPUTGB1_5129PPUTGB1_5128
PPUT351746 PPUT_4948PPUT_4953PPUT_4949PPUT_4952PPUT_4952PPUT_4951
PPUT160488 PP_5075PP_5080PP_5076PP_5079PP_5079PP_5078
PPRO298386 PBPRA0539PBPRA0279PBPRA0542PBPRA0280PBPRA0280PBPRA0281
PNAP365044 PNAP_0676PNAP_0683PNAP_0678PNAP_0678PNAP_0679
PMEN399739 PMEN_0551PMEN_0546PMEN_0550PMEN_0547PMEN_0547PMEN_0548
PLUT319225 PLUT_1693PLUT_0502PLUT_1406PLUT_1406PLUT_1407
PLUM243265 PLU4010PLU0091PLU4009PLU1245PLU0090PLU0089
PING357804 PING_0162PING_1007PING_0163PING_0163PING_0164
PHAL326442 PSHAA2716PSHAB0127PSHAA2715PSHAA2715PSHAA2714
PFLU220664 PFL_0454PFL_0449PFL_0453PFL_0450PFL_0450PFL_0451
PFLU216595 PFLU0415PFLU4070PFLU0414PFLU0411PFLU0411PFLU0412
PFLU205922 PFL_0414PFL_0409PFL_0413PFL_0410PFL_0410PFL_0411
PENT384676 PSEEN0338PSEEN0333PSEEN0337PSEEN0334PSEEN0334PSEEN0335
PCRY335284 PCRYO_2164PCRYO_2169PCRYO_2165PCRYO_2168PCRYO_2168PCRYO_2167
PCAR338963 PCAR_1483PCAR_2134PCAR_1482PCAR_2174PCAR_2174PCAR_2132
PATL342610 PATL_3749PATL_0667PATL_3748PATL_0666PATL_0666PATL_0665
PARC259536 PSYC_1873PSYC_1879PSYC_1874PSYC_1878PSYC_1878PSYC_1877
PAER208964 PA5035PA5040PA5036PA5039PA5039PA5038
PAER208963 PA14_66560PA14_66620PA14_66570PA14_66610PA14_66610PA14_66600
NOCE323261 NOC_1603NOC_0251NOC_1604NOC_0252NOC_0252NOC_0253
NHAM323097 NHAM_1137NHAM_1138NHAM_0490NHAM_0490NHAM_0491
NARO279238 SARO_3175SARO_3176SARO_1900SARO_1900SARO_1899
MSP409 M446_1811M446_1175M446_1812M446_2170M446_2169
MSP400668 MMWYL1_4113MMWYL1_4118MMWYL1_4114MMWYL1_4117MMWYL1_4117MMWYL1_4116
MSP266779 MESO_0614MESO_2744MESO_3064MESO_3064MESO_3065
MPET420662 MPE_A3102MPE_A3109MPE_A3103MPE_A3108MPE_A3108MPE_A3107
MMAR394221 MMAR10_0301MMAR10_2771MMAR10_0302MMAR10_2273MMAR10_2274
MLOT266835 MLL6829MLL3030MLL3573MLL3573MLL3571
MFLA265072 MFLA_2457MFLA_2734MFLA_2456MFLA_2456MFLA_2455
MEXT419610 MEXT_3267MEXT_0031MEXT_3266MEXT_1641MEXT_1641
MCAP243233 MCA_2040MCA_0329MCA_2039MCA_0330MCA_0330MCA_0331
LCHO395495 LCHO_3403LCHO_3396LCHO_3401LCHO_3401LCHO_3400
KPNE272620 GKPORF_B2960GKPORF_B3103GKPORF_B2959GKPORF_B4658GKPORF_B3102GKPORF_B3101
JSP375286 MMA_3300MMA_3364MMA_3301MMA_3363MMA_3363MMA_3363
ILOI283942 IL1074IL2471IL1075IL2472IL2472IL2473
HNEP81032 HNE_0092HNE_2514HNE_0093HNE_0081HNE_0082
HMOD498761 HM1_0290HM1_1037HM1_0247HM1_0247HM1_0248
HHAL349124 HHAL_1057HHAL_2255HHAL_1056HHAL_2258HHAL_2258HHAL_2257
HCHE349521 HCH_05964HCH_05969HCH_05965HCH_05968HCH_05968HCH_05967
HARS204773 HEAR3121HEAR3082HEAR3120HEAR3120HEAR3120
GURA351605 GURA_2411GURA_1814GURA_0393GURA_1819GURA_1819GURA_1820
GSUL243231 GSU_3057GSU_2028GSU_3450GSU_2026GSU_2026GSU_2025
GOXY290633 GOX1851GOX1852GOX1788GOX1788GOX1788
GMET269799 GMET_3023GMET_0975GMET_0147GMET_0977GMET_0977GMET_0978
FSUC59374 FSU1347FSU0658FSU2320FSU2787FSU2787
ESP42895 ENT638_3657ENT638_3804ENT638_3656ENT638_0859ENT638_3803ENT638_3802
ELIT314225 ELI_12130ELI_01520ELI_12125ELI_04970ELI_04965
EFER585054 EFER_3190EFER_3357EFER_3189EFER_2635EFER_3356EFER_3355
ECOO157 GLTDHOFQGLTBAROLAROKAROB
ECOL83334 ECS4092ECS4233ECS4091ECS0438ECS4232ECS4231
ECOL585397 ECED1_3346ECED1_4049ECED1_3870ECED1_0411ECED1_4048ECED1_4047
ECOL585057 ECIAI39_3708ECIAI39_3869ECIAI39_3707ECIAI39_0293ECIAI39_3868ECIAI39_3867
ECOL585056 ECUMN_3693ECUMN_3849ECUMN_3692ECUMN_0426ECUMN_3848ECUMN_3847
ECOL585055 EC55989_3631EC55989_3796EC55989_3630EC55989_0397EC55989_3795EC55989_3794
ECOL585035 ECS88_3597ECS88_3776ECS88_3596ECS88_0383ECS88_3775ECS88_3774
ECOL585034 ECIAI1_3361ECIAI1_3529ECIAI1_3360ECIAI1_0388ECIAI1_3528ECIAI1_3527
ECOL481805 ECOLC_1209ECOLC_0322ECOLC_0488ECOLC_3244ECOLC_0323ECOLC_0324
ECOL469008 ECBD_1222ECBD_0356ECBD_0530ECBD_3276ECBD_0357ECBD_0358
ECOL439855 ECSMS35_3509ECSMS35_3667ECSMS35_3508ECSMS35_0418ECSMS35_3666ECSMS35_3665
ECOL413997 ECB_03078ECB_03243ECB_03077ECB_00335ECB_03242ECB_03241
ECOL409438 ECSE_3498ECSE_3652ECSE_3497ECSE_0409ECSE_3651ECSE_3650
ECOL405955 APECO1_4089APECO1_3072APECO1_32232APECO1_1620APECO1_3073APECO1_3074
ECOL364106 UTI89_C3650UTI89_C3889UTI89_C3649UTI89_C0407UTI89_C3888UTI89_C3887
ECOL362663 ECP_3302ECP_3477ECP_0447ECP_3476ECP_3475
ECOL331111 ECE24377A_3701ECE24377A_3861ECE24377A_3700ECE24377A_0415ECE24377A_3860ECE24377A_3859
ECOL316407 ECK3203:JW3180:B3213ECK3378:JW3354:B3391ECK3202:JW3179:B3212ECK0383:JW0379:B0388ECK3377:JW5947:B3390ECK3376:JW3352:B3389
ECOL199310 C3974C4161C3973C0495C4160C4159
ECAR218491 ECA4461ECA4094ECA0312ECA1103ECA4093ECA4092
DSHI398580 DSHI_0001DSHI_0002DSHI_1609DSHI_1609DSHI_1608
DRED349161 DRED_1071DRED_2805DRED_1020DRED_1020DRED_1021
DHAF138119 DSY2361DSY4385DSY2391DSY2391DSY2390
DARO159087 DARO_0218DARO_0214DARO_0217DARO_0215DARO_0215DARO_0216
CVIO243365 CV_4037CV_0829CV_4038CV_0828CV_0828CV_0827
CSP501479 CSE45_4261CSE45_5461CSE45_4262CSE45_1689CSE45_1689CSE45_1690
CSAL290398 CSAL_0616CSAL_0612CSAL_0615CSAL_0613CSAL_0613CSAL_0614
CPSY167879 CPS_4502CPS_0471CPS_0761CPS_0472CPS_0472CPS_0473
CJAP155077 CJA_3146CJA_0416CJA_3147CJA_0417CJA_0417CJA_0418
CHYD246194 CHY_1991CHY_0707CHY_0629CHY_0629CHY_0629
CACE272562 CAC1674CAC1673CAC0898CAC0898CAC0894
BVIE269482 BCEP1808_0385BCEP1808_0373BCEP1808_0384BCEP1808_0374BCEP1808_0374BCEP1808_0375
BTHA271848 BTH_I3013BTH_I3025BTH_I3014BTH_I3024BTH_I3024BTH_I3023
BSP36773 BCEP18194_A3500BCEP18194_A3488BCEP18194_A3499BCEP18194_A3489BCEP18194_A3489BCEP18194_A3490
BPSE320373 BURPS668_3689BURPS668_3701BURPS668_3690BURPS668_3700BURPS668_3700BURPS668_3699
BPSE320372 BURPS1710B_A4011BURPS1710B_A4024BURPS1710B_A4012BURPS1710B_A4023BURPS1710B_A4023BURPS1710B_A4022
BPSE272560 BPSL3158BPSL3170BPSL3159BPSL3169BPSL3169BPSL3168
BPET94624 BPET0152BPET2077BPET0153BPET4911BPET4911BPET4910
BPER257313 BP3754BP2526BP3753BP3656BP3656BP3657
BPAR257311 BPP4254BPP1909BPP4253BPP0071BPP0071BPP0072
BMAL320389 BMA10247_2786BMA10247_2798BMA10247_2787BMA10247_2797BMA10247_2797BMA10247_2796
BMAL320388 BMASAVP1_A3217BMASAVP1_A3205BMASAVP1_A3216BMASAVP1_A3206BMASAVP1_A3206BMASAVP1_A3207
BMAL243160 BMA_2735BMA_2748BMA_2736BMA_2747BMA_2747BMA_2746
BJAP224911 BLR7744BLL1842BLR7743BLL0188BLL0187
BCEN331272 BCEN2424_0403BCEN2424_0391BCEN2424_0402BCEN2424_0392BCEN2424_0392BCEN2424_0393
BCEN331271 BCEN_2704BCEN_2716BCEN_2705BCEN_2715BCEN_2715BCEN_2714
BBRO257310 BB4841BB2097BB4840BB0071BB0071BB0072
BAMB398577 BAMMC406_0331BAMMC406_0319BAMMC406_0330BAMMC406_0320BAMMC406_0320BAMMC406_0321
BAMB339670 BAMB_0322BAMB_0310BAMB_0321BAMB_0311BAMB_0311BAMB_0312
ASP76114 EBA2251EBA2259EBA2252EBA2258EBA2258EBA2256
ASP62977 ACIAD3349ACIAD3355ACIAD3350ACIAD3354ACIAD3354ACIAD3353
ASP62928 AZO3641AZO3646AZO3642AZO3645AZO3645AZO3644
ASP232721 AJS_0734AJS_0741AJS_0150AJS_0150AJS_0735
ASAL382245 ASA_1666ASA_1124ASA_1667ASA_1125ASA_1125ASA_1126
AHYD196024 AHA_2704AHA_3190AHA_2703AHA_3189AHA_3189AHA_3188
AFER243159 AFE_2311AFE_2305AFE_2310AFE_2306AFE_2306AFE_2307
AEHR187272 MLG_2764MLG_2759MLG_2763MLG_2761MLG_2761MLG_2762
ACRY349163 ACRY_1667ACRY_0481ACRY_1666ACRY_1467ACRY_1467ACRY_1467
ABOR393595 ABO_2228ABO_2233ABO_2229ABO_2232ABO_2232ABO_2231
ABAU360910 BAV3292BAV3291BAV0073BAV0073BAV0074
AAVE397945 AAVE_1000AAVE_1008AAVE_1002AAVE_1002AAVE_1003
AAEO224324 AQ_2064AQ_1288AQ_1565AQ_2177AQ_2177


Organism features enriched in list (features available for 185 out of the 201 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00005671492
Disease:Bubonic_plague 0.000965366
Disease:Dysentery 0.000965366
Disease:Gastroenteritis 0.00083521013
Endospores:No 1.745e-740211
Endospores:Yes 0.0008057753
GC_Content_Range4:0-40 5.343e-385213
GC_Content_Range4:40-60 1.910e-799224
GC_Content_Range4:60-100 6.258e-1280145
GC_Content_Range7:30-40 4.661e-265166
GC_Content_Range7:50-60 5.090e-858107
GC_Content_Range7:60-70 2.300e-1378134
Genome_Size_Range5:0-2 6.260e-282155
Genome_Size_Range5:2-4 1.172e-638197
Genome_Size_Range5:4-6 1.544e-27116184
Genome_Size_Range5:6-10 7.433e-62947
Genome_Size_Range9:1-2 7.953e-222128
Genome_Size_Range9:2-3 6.675e-717120
Genome_Size_Range9:4-5 3.136e-115996
Genome_Size_Range9:5-6 3.001e-125788
Genome_Size_Range9:6-8 6.724e-62538
Gram_Stain:Gram_Neg 2.431e-28164333
Gram_Stain:Gram_Pos 4.583e-207150
Habitat:Host-associated 0.000021944206
Habitat:Multiple 7.649e-679178
Motility:No 9.401e-1118151
Motility:Yes 6.609e-17131267
Optimal_temp.:25-30 2.231e-61619
Optimal_temp.:37 0.001108721106
Oxygen_Req:Anaerobic 0.000091917102
Oxygen_Req:Facultative 0.000015486201
Pathogenic_in:Human 0.003077854213
Pathogenic_in:Plant 0.00084961115
Shape:Coccus 2.151e-9582
Shape:Rod 1.898e-20159347
Shape:Spiral 0.0010973334
Temp._range:Psychrophilic 0.000576589
Temp._range:Thermophilic 0.0097066535



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 163
Effective number of orgs (counting one per cluster within 468 clusters): 129

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT31
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041


Names of the homologs of the genes in the group in each of these orgs
  G7506   EG12113   EG10403   EG10082   EG10081   EG10074   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276 TP_0735
TKOD69014 TK1325
TDEN243275 TDE_0407
TACI273075
STOK273063
SSUI391296 SSU98_1267
SSUI391295 SSU05_1252
SSOL273057
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SMAR399550
SHAE279808 SH2540
SEPI176279 SERP1103
SAGA211110 GBS1448
SAGA208435 SAG_1378
SAGA205921 SAK_1411
SACI330779
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PPEN278197
PISL384616 PISL_1774
PHOR70601 PH1873
PAST100379
PARS340102
PAER178306
PACN267747 PPA1134
PABY272844 PAB1214
OTSU357244
OIHE221109 OB3099
NSEN222891
NPHA348780 NP1794A
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0664
MMAR444158
MMAR426368
MMAR402880
MMAR267377
MLAB410358 MLAB_1112
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1328
MBAR269797 MBAR_A0227
MART243272
MAEO419665
MACE188937 MA3787
LSPH444177 BSPH_1961
LSAK314315 LSA0894
LREU557436
LPLA220668
LJOH257314
LINT363253 LI0325
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_2556
LBRE387344
LACI272621
IHOS453591
HWAL362976 HQ1714A
HSP64091
HSAL478009
HPYL85963
HPYL357544 HPAG1_0285
HPY HP0283
HMUK485914 HMUK_3135
HMAR272569 RRNAC0169
HHEP235279 HH_0882
HBUT415426
HACI382638
FNUC190304 FN0822
FNOD381764 FNOD_0283
FMAG334413
FJOH376686 FJOH_2161
ERUM302409
ERUM254945
ECHA205920
ECAN269484
CTRA471473
CTRA471472
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMAQ397948
CKOR374847 KCR_0346
CJEJ195099 CJE_0007
CJEJ192222 CJ0007
CHUT269798 CHU_3776
CHOM360107 CHAB381_1074
CFEL264202
CDIP257309 DIP1344
CCUR360105 CCV52592_1438
CCON360104 CCC13826_0087
CCAV227941
CBOT536232 CLM_1886
CBOT515621 CLJ_B1754
CBOT498213 CLD_2910
CBOT441772 CLI_1722
CBOT441771 CLC_1671
CBOT441770 CLB_1662
CBOT36826 CBO1645
CABO218497
BXEN266265
BTUR314724
BHER314723
BGAR290434
BBUR224326
BBAC264462 BD0867
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
APER272557
ANAE240017 ANA_0819
AMAR234826
ALAI441768 ACL_0880
AFUL224325 AF_0953


Organism features enriched in list (features available for 155 out of the 163 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001557518112
Disease:Botulism 0.001266255
Disease:None 0.0010091658
Disease:Pharyngitis 0.000021888
Disease:Wide_range_of_infections 3.588e-71111
Disease:bronchitis_and_pneumonitis 0.000021888
Endospores:No 1.640e-987211
GC_Content_Range4:0-40 2.292e-18102213
GC_Content_Range4:40-60 0.002451046224
GC_Content_Range4:60-100 2.766e-147145
GC_Content_Range7:0-30 4.752e-103247
GC_Content_Range7:30-40 8.814e-870166
GC_Content_Range7:50-60 4.090e-611107
GC_Content_Range7:60-70 1.361e-127134
Genome_Size_Range5:0-2 3.584e-40106155
Genome_Size_Range5:2-4 0.000683137197
Genome_Size_Range5:4-6 9.170e-1810184
Genome_Size_Range5:6-10 0.0000423247
Genome_Size_Range9:0-1 1.652e-82127
Genome_Size_Range9:1-2 5.096e-2885128
Genome_Size_Range9:3-4 0.0000385777
Genome_Size_Range9:4-5 4.704e-6996
Genome_Size_Range9:5-6 4.134e-12188
Genome_Size_Range9:6-8 0.0000754138
Gram_Stain:Gram_Neg 3.837e-860333
Habitat:Host-associated 2.683e-883206
Habitat:Multiple 0.000023928178
Habitat:Specialized 0.00249032353
Motility:Yes 0.001384756267
Optimal_temp.:- 0.000338151257
Optimal_temp.:37 0.000015246106
Optimal_temp.:85 0.004855044
Oxygen_Req:Aerobic 0.001236435185
Oxygen_Req:Anaerobic 0.001600039102
Pathogenic_in:Human 0.001636871213
Pathogenic_in:Swine 0.001266255
Shape:Coccus 0.00994223082
Shape:Irregular_coccus 1.078e-71517
Shape:Pleomorphic 0.005059268
Shape:Rod 1.739e-1059347
Shape:Sphere 1.432e-71619
Shape:Spiral 0.00439011634
Temp._range:Hyperthermophilic 0.00001161623



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951540.6744
GLYCOCAT-PWY (glycogen degradation I)2461710.6436
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491240.6112
TYRFUMCAT-PWY (tyrosine degradation I)1841400.6069
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251560.5962
PWY-5918 (heme biosynthesis I)2721730.5901
PWY-4041 (γ-glutamyl cycle)2791720.5661
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001790.5649
AST-PWY (arginine degradation II (AST pathway))1201030.5597
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181480.5591
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861730.5562
PWY-5148 (acyl-CoA hydrolysis)2271510.5548
PWY-1269 (CMP-KDO biosynthesis I)3251830.5371
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001730.5237
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831270.5123
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911670.5032
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481850.5029
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491520.5023
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491520.5023
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911290.5017
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391820.5007
PWY-5028 (histidine degradation II)1301010.4990
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901660.4986
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961680.4985
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351020.4871
GLUCONSUPER-PWY (D-gluconate degradation)2291420.4851
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381030.4835
P344-PWY (acrylonitrile degradation)2101340.4812
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551510.4799
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761190.4745
REDCITCYC (TCA cycle variation II)1741180.4734
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981940.4689
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651850.4687
PWY-5913 (TCA cycle variation IV)3011650.4665
PWY-6087 (4-chlorocatechol degradation)2231370.4659
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561090.4650
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911240.4645
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291730.4598
GLUCARDEG-PWY (D-glucarate degradation I)1521060.4554
PWY-5340 (sulfate activation for sulfonation)3851880.4508
PWY-5386 (methylglyoxal degradation I)3051640.4506
GALACTCAT-PWY (D-galactonate degradation)104820.4461
PWY0-981 (taurine degradation IV)106830.4459
GALACTITOLCAT-PWY (galactitol degradation)73650.4425
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3831860.4405
LIPASYN-PWY (phospholipases)2121290.4392
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111640.4372
PWY-46 (putrescine biosynthesis III)138970.4339
PWY-6193 (3-chlorocatechol degradation II (ortho))1941210.4331
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891560.4321
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81680.4274
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135940.4204
GALACTARDEG-PWY (D-galactarate degradation I)1511010.4189
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96750.4187
DAPLYSINESYN-PWY (lysine biosynthesis I)3421710.4186
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121260.4174
GLYSYN-THR-PWY (glycine biosynthesis IV)2151270.4163
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161910.4139
PWY-561 (superpathway of glyoxylate cycle)1621050.4128
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171620.4102
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221920.4102
VALDEG-PWY (valine degradation I)2901530.4091
PWY0-321 (phenylacetate degradation I (aerobic))1551010.4050
PWY0-862 (cis-dodecenoyl biosynthesis)3431690.4027
PWY-5986 (ammonium transport)3611740.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12113   EG10403   EG10082   EG10081   EG10074   
G75060.9988370.999930.9988180.9988790.998998
EG121130.9990260.9997090.9998010.999756
EG104030.9988460.9989870.998986
EG100820.9999860.999929
EG100810.999985
EG10074



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PAIRWISE BLAST SCORES:

  G7506   EG12113   EG10403   EG10082   EG10081   EG10074   
G75060.0f0-----
EG12113-0.0f0----
EG10403--0.0f0---
EG10082---0.0f07.0e-18-
EG10081---7.0e-180.0f0-
EG10074-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis) (degree of match pw to cand: 0.143, degree of match cand to pw: 0.500, average score: 0.694)
  Genes in pathway or complex:
             0.8744 0.5345 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.2952 0.0025 EG10078 (aroF) AROF-MONOMER (AroF)
             0.1480 0.0017 EG10080 (aroH) AROH-MONOMER (AroH)
             0.2083 0.0006 EG10079 (aroG) AROG-MONOMER (AroG)
   *in cand* 0.9996 0.9990 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.5996 0.0679 EG10076 (aroD) AROD-MONOMER (AroD)
             0.9944 0.9864 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
   *in cand* 0.9996 0.9989 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
   *in cand* 0.9995 0.9988 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.5230 0.0040 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.6713 0.0029 EG10075 (aroC) AROC-MONOMER (AroC)
             0.7617 0.1056 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.6429 0.1299 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.8492 0.5691 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.4283 0.1572 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.7535 0.5513 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.7546 0.3455 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.7516 0.1368 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.6718 0.1541 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.1005 0.0044 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.2649 0.0040 EG11040 (tyrB) TYRB-MONOMER (TyrB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9988 EG10403 (gltB) GLUSYNLARGE-MONOMER (glutamate synthase, large subunit)
   *in cand* 0.9995 0.9988 EG12113 (hofQ) EG12113-MONOMER (protein involved in utilization of DNA as a carbon source)
   *in cand* 0.9992 0.9988 G7506 (ygfT) G7506-MONOMER (fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit)

- ARO-PWY (chorismate biosynthesis I) (degree of match pw to cand: 0.273, degree of match cand to pw: 0.500, average score: 0.758)
  Genes in pathway or complex:
             0.6713 0.0029 EG10075 (aroC) AROC-MONOMER (AroC)
             0.5230 0.0040 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
   *in cand* 0.9995 0.9988 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
   *in cand* 0.9996 0.9989 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.9944 0.9864 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.5996 0.0679 EG10076 (aroD) AROD-MONOMER (AroD)
   *in cand* 0.9996 0.9990 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.2083 0.0006 EG10079 (aroG) AROG-MONOMER (AroG)
             0.1480 0.0017 EG10080 (aroH) AROH-MONOMER (AroH)
             0.2952 0.0025 EG10078 (aroF) AROF-MONOMER (AroF)
             0.8744 0.5345 EG11234 (ydiB) EG11234-MONOMER (YdiB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9988 EG10403 (gltB) GLUSYNLARGE-MONOMER (glutamate synthase, large subunit)
   *in cand* 0.9995 0.9988 EG12113 (hofQ) EG12113-MONOMER (protein involved in utilization of DNA as a carbon source)
   *in cand* 0.9992 0.9988 G7506 (ygfT) G7506-MONOMER (fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit)

- ALL-CHORISMATE-PWY (superpathway of chorismate) (degree of match pw to cand: 0.053, degree of match cand to pw: 0.500, average score: 0.580)
  Genes in pathway or complex:
             0.1485 0.0373 EG10799 (purN) GART-MONOMER (phosphoribosylglycinamide formyltransferase 1)
             0.4017 0.1293 EG11375 (folE) GTP-CYCLOHYDRO-I-MONOMER (GTP cyclohydrolase I monomer)
             0.5157 0.2567 EG11138 (nudB) H2NEOPTERINP3PYROPHOSPHOHYDRO-MONOMER (dihydroneopterin triphosphate pyrophosphohydrolase)
             0.9420 0.8134 EG11673 (folB) H2NEOPTERINALDOL-MONOMER (FolB)
             0.4592 0.1887 EG11374 (folK) H2PTERIDINEPYROPHOSPHOKIN-MONOMER (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)
             0.6785 0.4622 G6862 (folM) G6862-MONOMER (dihydromonapterin reductase / dihydrofolate reductase)
             0.7644 0.5556 EG10326 (folA) DIHYDROFOLATEREDUCT-MONOMER (dihydrofolate reductase)
             0.2971 0.0021 EG10327 (folC) FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
             0.2388 0.0040 EG10328 (folD) FOLD-MONOMER (FolD)
             0.9617 0.8564 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
             0.6404 0.3026 EG10683 (pabB) PABASYN-COMPI-MONOMER (PabB)
             0.3855 0.0850 EG50011 (folP) H2PTEROATESYNTH-MONOMER (FolP)
             0.1123 0.0017 EG11493 (pabC) ADCLY-MONOMER (pabC)
             0.8969 0.8411 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
             0.9621 0.9444 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.8760 0.7135 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.9266 0.7861 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
             0.9904 0.9870 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
             0.4503 0.0034 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
             0.9336 0.8623 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.9403 0.8766 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
             0.2649 0.0040 EG11040 (tyrB) TYRB-MONOMER (TyrB)
             0.1005 0.0044 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.6718 0.1541 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.7516 0.1368 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.7546 0.3455 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.7535 0.5513 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.4283 0.1572 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.8492 0.5691 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.6429 0.1299 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.7617 0.1056 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.6713 0.0029 EG10075 (aroC) AROC-MONOMER (AroC)
             0.5230 0.0040 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
   *in cand* 0.9995 0.9988 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
   *in cand* 0.9996 0.9989 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.9944 0.9864 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.5996 0.0679 EG10076 (aroD) AROD-MONOMER (AroD)
   *in cand* 0.9996 0.9990 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.2083 0.0006 EG10079 (aroG) AROG-MONOMER (AroG)
             0.1480 0.0017 EG10080 (aroH) AROH-MONOMER (AroH)
             0.2952 0.0025 EG10078 (aroF) AROF-MONOMER (AroF)
             0.8744 0.5345 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.6764 0.4265 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
             0.4584 0.1875 EG10259 (entA) ENTA-MONOMER (EntA)
             0.4837 0.1659 EG10263 (entE) ENTE-MONOMER (EntE)
             0.1159 0.0471 EG10264 (entF) ENTF-PANT (aryl carrier protein / serine activating enzyme)
             0.2549 0.0956 EG10262 (entD) ENTD-MONOMER (phosphopantetheinyl transferase)
             0.4012 0.1701 EG10260 (entB) ENTB-MONOMER (EntB)
             0.6043 0.2899 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
             0.5486 0.2729 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.4394 0.2562 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
             0.2953 0.1119 EG10579 (menD) MEND-MONOMER (MenD)
             0.3874 0.1312 EG12362 (menF) MENF-MONOMER (MenF)
             0.3006 0.1510 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
             0.4827 0.1085 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.6681 0.4822 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
             0.9890 0.9773 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9988 EG10403 (gltB) GLUSYNLARGE-MONOMER (glutamate synthase, large subunit)
   *in cand* 0.9995 0.9988 EG12113 (hofQ) EG12113-MONOMER (protein involved in utilization of DNA as a carbon source)
   *in cand* 0.9992 0.9988 G7506 (ygfT) G7506-MONOMER (fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit)
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10074 EG10081 EG12113 (centered at EG10081)
G7506 (centered at G7506)
EG10403 (centered at EG10403)
EG10082 (centered at EG10082)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7506   EG12113   EG10403   EG10082   EG10081   EG10074   
296/623230/623387/623356/623372/623409/623
AAEO224324:0:Tyes5530197636636-
AAUR290340:2:Tyes--0--428
AAVE397945:0:Tyes-08223
ABAC204669:0:Tyes133302223--784
ABAU360910:0:Tyes3228-3227001
ABOR393595:0:Tyes051443
ABUT367737:0:Tyes699706700--0
ACAU438753:0:Tyes1-0-40904091
ACEL351607:0:Tyes--0230230-
ACRY349163:8:Tyes118401183983983983
ADEH290397:0:Tyes2629460632--0
AEHR187272:0:Tyes504223
AFER243159:0:Tyes605112
AFUL224325:0:Tyes--0---
AHYD196024:0:Tyes14700469469468
ALAI441768:0:Tyes---0--
AMAR329726:9:Tyes--168000705
AMET293826:0:Tyes--2687110
ANAE240017:0:Tyes-----0
AORE350688:0:Tyes---00-
APLE416269:0:Tyes-7-110
APLE434271:0:Tno-7-110
ASAL382245:5:Tyes5170518112
ASP1667:3:Tyes--0-570569
ASP232721:2:Tyes-57558200576
ASP62928:0:Tyes051443
ASP62977:0:Tyes051443
ASP76114:2:Tyes051443
AVAR240292:3:Tyes--748003845
BABO262698:0:Tno--0---
BABO262698:1:Tno----10
BAMB339670:3:Tno12011112
BAMB398577:3:Tno12011112
BAMY326423:0:Tyes0-1--225
BANT260799:0:Tno--036493649960
BANT261594:2:Tno--036073607926
BANT568206:2:Tyes--961137313730
BANT592021:2:Tno--038013801960
BAPH198804:0:Tyes---110
BAPH372461:0:Tyes---110
BBAC264462:0:Tyes-0----
BBAC360095:0:Tyes----10
BBRO257310:0:Tyes481120464810001
BCAN483179:0:Tno--0---
BCAN483179:1:Tno----10
BCEN331271:2:Tno0121111110
BCEN331272:3:Tyes12011112
BCER226900:1:Tyes--03641-990
BCER288681:0:Tno--035643564994
BCER315749:1:Tyes--023462346755
BCER405917:1:Tyes--0352235221002
BCER572264:1:Tno--037083708971
BCIC186490:0:Tyes---110
BCLA66692:0:Tyes1895-142--0
BFRA272559:1:Tyes700--0--
BFRA295405:0:Tno783--0--
BHAL272558:0:Tyes72-71--0
BHEN283166:0:Tyes---001
BJAP224911:0:Fyes760816747607-10
BLIC279010:0:Tyes--1744-01989
BLON206672:0:Tyes0-1---
BMAL243160:1:Tno0121111110
BMAL320388:1:Tno12011112
BMAL320389:1:Tyes0121111110
BMEL224914:0:Tno--0---
BMEL224914:1:Tno----01
BMEL359391:0:Tno--0---
BMEL359391:1:Tno----10
BOVI236:0:Tyes--0---
BOVI236:1:Tyes----10
BPAR257311:0:Tno400417564003001
BPER257313:0:Tyes112401123103010301031
BPET94624:0:Tyes019421480848084807
BPSE272560:1:Tyes0121111110
BPSE320372:1:Tno0131121211
BPSE320373:1:Tno0121111110
BPUM315750:0:Tyes1538-1539-01727
BQUI283165:0:Tyes---001
BSP107806:2:Tyes---110
BSP36773:2:Tyes12011112
BSP376:0:Tyes5359-5358-00
BSUB:0:Tyes1627-1628-02075
BSUI204722:0:Tyes--0---
BSUI204722:1:Tyes----10
BSUI470137:0:Tno--0---
BSUI470137:1:Tno----10
BTHA271848:1:Tno0121111110
BTHE226186:0:Tyes3835-02903--
BTHU281309:1:Tno--035053505942
BTHU412694:1:Tno--032383238893
BTRI382640:1:Tyes---001
BVIE269482:7:Tyes12011112
BWEI315730:4:Tyes--0358435841021
CACE272562:1:Tyes776-775440
CAULO:0:Tyes608-609-01
CBEI290402:0:Tyes0-26723038-3043
CBLO203907:0:Tyes---110
CBLO291272:0:Tno---110
CBOT36826:1:Tno0-----
CBOT441770:0:Tyes0-----
CBOT441771:0:Tno0-----
CBOT441772:1:Tno0-----
CBOT498213:1:Tno0-----
CBOT508765:1:Tyes1982-02072-2077
CBOT515621:2:Tyes0-----
CBOT536232:0:Tno0-----
CBUR227377:1:Tyes-0-112
CBUR360115:1:Tno-0-112
CBUR434922:2:Tno---001
CCHL340177:0:Tyes358-01041--
CCON360104:2:Tyes-----0
CCUR360105:0:Tyes-----0
CDES477974:0:Tyes0---414415
CDIF272563:1:Tyes0----301
CDIP257309:0:Tyes----0-
CEFF196164:0:Fyes--0161616161615
CFET360106:0:Tyes617-618-4750
CGLU196627:0:Tyes--0-1455-
CHOM360107:1:Tyes-----0
CHUT269798:0:Tyes--0---
CHYD246194:0:Tyes1329-78000
CJAP155077:0:Tyes266502666112
CJEI306537:0:Tyes--010021002-
CJEJ192222:0:Tyes--0---
CJEJ195099:0:Tno--0---
CJEJ354242:2:Tyes--0--951
CJEJ360109:0:Tyes--0--717
CJEJ407148:0:Tno--0--971
CKLU431943:1:Tyes0-1148330-325
CKOR374847:0:Tyes0-----
CMET456442:0:Tyes---3130-
CMIC31964:2:Tyes1216-12170--
CMIC443906:2:Tyes0-1---
CNOV386415:0:Tyes0----154
CPEL335992:0:Tyes3740375---
CPER195102:1:Tyes559----0
CPER195103:0:Tno768----0
CPER289380:3:Tyes570----0
CPHY357809:0:Tyes573--1741740
CPSY167879:0:Tyes39220281112
CRUT413404:0:Tyes--6332252250
CSAL290398:0:Tyes403112
CSP501479:1:Fyes-0----
CSP501479:6:Fyes0-1---
CSP501479:8:Fyes---001
CSP78:2:Tyes4268-4267-10
CTEP194439:0:Tyes68290--987
CTET212717:0:Tyes723----0
CVES412965:0:Tyes--5702082080
CVIO243365:0:Tyes330123302110
DARO159087:0:Tyes403112
DDES207559:0:Tyes924--0--
DETH243164:0:Tyes0---415418
DGEO319795:0:Tyes0-1---
DHAF138119:0:Tyes0-2034303029
DNOD246195:0:Tyes-0-259259711
DOLE96561:0:Tyes01100-28282828-
DPSY177439:2:Tyes0943-208208-
DRAD243230:3:Tyes--0-585-
DRED349161:0:Tyes51-1796001
DSHI398580:5:Tyes0-1163016301629
DSP216389:0:Tyes0--407407410
DSP255470:0:Tno0--319319322
DVUL882:1:Tyes1574379-00-
ECAR218491:0:Tyes42043829079238283827
ECOL199310:0:Tno341035953409035943593
ECOL316407:0:Tno282534982824034993500
ECOL331111:6:Tno315433093153033083307
ECOL362663:0:Tno28543027-030263025
ECOL364106:1:Tno323934713238034703469
ECOL405955:2:Tyes205730712912030703069
ECOL409438:6:Tyes314533053144033043303
ECOL413997:0:Tno275629272755029262925
ECOL439855:4:Tno299731462996031453144
ECOL469008:0:Tno8830179291012
ECOL481805:0:Tno9030172293812
ECOL585034:0:Tno295031122949031113110
ECOL585035:0:Tno311132843110032833282
ECOL585055:0:Tno320633683205033673366
ECOL585056:2:Tno328034363279034353434
ECOL585057:0:Tno343135923430035913590
ECOL585397:0:Tno286835483375035473546
ECOL83334:0:Tno373938873738038863885
ECOLI:0:Tno255730622885030613060
ECOO157:0:Tno375439053753039043903
EFAE226185:3:Tyes925--440
EFER585054:1:Tyes5647235630722721
ELIT314225:0:Tyes215302152-701700
ESP42895:1:Tyes282329702822029692968
FALN326424:0:Tyes0-1264264-
FJOH376686:0:Tyes--0---
FNOD381764:0:Tyes0-----
FNUC190304:0:Tyes----0-
FPHI484022:1:Tyes-1-00-
FRANT:0:Tno-2-110
FSP106370:0:Tyes0-1199199-
FSP1855:0:Tyes239-238-0-
FSUC59374:0:Tyes674016242067-2067
FTUL351581:0:Tno-0-112
FTUL393011:0:Tno-0-112
FTUL393115:0:Tyes-2-110
FTUL401614:0:Tyes-2-110
FTUL418136:0:Tno-2-110
FTUL458234:0:Tno-0-112
GBET391165:0:Tyes87-88-00
GFOR411154:0:Tyes1-0---
GKAU235909:1:Tyes0-10--804
GMET269799:1:Tyes28798290831831832
GOXY290633:5:Tyes63-64000
GSUL243231:0:Tyes102931419110
GTHE420246:1:Tyes1-0--830
GURA351605:0:Tyes200914080141314131414
GVIO251221:0:Tyes--0121512151016
HARS204773:0:Tyes-380373737
HAUR316274:2:Tyes--4247000
HCHE349521:0:Tyes051443
HDUC233412:0:Tyes-12-110
HHAL349124:0:Tyes112050120812081207
HHEP235279:0:Tyes-----0
HINF281310:0:Tyes-233-001
HINF374930:0:Tyes-0-245245244
HINF71421:0:Tno-218-001
HMAR272569:8:Tyes--0---
HMOD498761:0:Tyes0-437434342
HMUK485914:1:Tyes--0---
HNEP81032:0:Tyes11239912-01
HPY:0:Tno-----0
HPYL357544:1:Tyes-----0
HSOM205914:1:Tyes-0-112
HSOM228400:0:Tno-2-110
HWAL362976:1:Tyes--0---
ILOI283942:0:Tyes014301143114311432
JSP290400:1:Tyes0-3-22582259
JSP375286:0:Tyes0641636363
KPNE272620:2:Tyes114001647139138
KRAD266940:2:Fyes54-53-01
LBIF355278:1:Tyes--0---
LBIF355278:2:Tyes-0---867
LBIF456481:1:Tno--0---
LBIF456481:2:Tno-0---894
LBOR355276:1:Tyes-6211260--0
LBOR355277:1:Tno-5890--1206
LCAS321967:1:Tyes--0---
LCHO395495:0:Tyes-70554
LINN272626:1:Tno--01515198
LINT189518:0:Tyes-----0
LINT189518:1:Tyes-14310---
LINT267671:0:Tno-----0
LINT267671:1:Tno-01098---
LINT363253:3:Tyes0-----
LLAC272622:5:Tyes--0--485
LLAC272623:0:Tyes--0457-470
LMES203120:1:Tyes--0334334-
LMON169963:0:Tno--01515195
LMON265669:0:Tyes--01515196
LPNE272624:0:Tno-0-112
LPNE297245:1:Fno-0-112
LPNE297246:1:Fyes-0-112
LPNE400673:0:Tno-2-110
LSAK314315:0:Tyes-----0
LSPH444177:1:Tyes-----0
LWEL386043:0:Tyes--01515202
LXYL281090:0:Tyes1-0---
MABS561007:1:Tyes1-0-27642763
MACE188937:0:Tyes0-----
MAER449447:0:Tyes--76500464
MAQU351348:2:Tyes403--1
MAVI243243:0:Tyes1-0-32063205
MBAR269797:1:Tyes0-----
MBOV233413:0:Tno--1336-10
MBOV410289:0:Tno--1371-10
MBUR259564:0:Tyes0-----
MCAP243233:0:Tyes161301612112
MEXT419610:0:Tyes325103250-16241624
MFLA265072:0:Tyes-2277110
MGIL350054:3:Tyes0-2508-26702669
MHUN323259:0:Tyes88--00-
MLAB410358:0:Tyes0-----
MLEP272631:0:Tyes--0-285286
MLOT266835:2:Tyes-30600436436435
MMAG342108:0:Tyes0-1809-34043403
MMAR368407:0:Tyes0--16993-
MMAR394221:0:Tyes024591-19711972
MMAZ192952:0:Tyes0-----
MPET420662:1:Tyes071665
MSME246196:0:Tyes195-194-01
MSP164756:1:Tno694-2745-01
MSP164757:0:Tno666-667-01
MSP189918:2:Tyes704-2784-01
MSP266779:3:Tyes-02144246524652466
MSP400668:0:Tyes051443
MSP409:2:Tyes6000601-936935
MSUC221988:0:Tyes-2-110
MTBCDC:0:Tno--1434-10
MTBRV:0:Tno--1334-10
MTHE264732:0:Tyes0--393938
MTHE349307:0:Tyes936-0---
MTUB336982:0:Tno--1335-10
MTUB419947:0:Tyes--1367-10
MVAN350058:0:Tyes3047-3048-01
MXAN246197:0:Tyes117990---
NARO279238:0:Tyes1306-1307110
NEUR228410:0:Tyes-338-001
NEUT335283:2:Tyes-1408-110
NFAR247156:2:Tyes--0358635863587
NGON242231:0:Tyes-2-110
NHAM323097:2:Tyes612-613001
NMEN122586:0:Tno-0-112
NMEN122587:0:Tyes-2-110
NMEN272831:0:Tno---110
NMEN374833:0:Tno-2-110
NMUL323848:3:Tyes-1913-0051
NOCE323261:1:Tyes131001311112
NPHA348780:2:Tyes--0---
NSP103690:6:Tyes--313400683
NSP35761:1:Tyes--61200-
NSP387092:0:Tyes117-118--0
NWIN323098:0:Tyes--2583001
OANT439375:4:Tyes--0---
OANT439375:5:Tyes0---542543
OCAR504832:0:Tyes866-867-10
OIHE221109:0:Tyes--0---
PABY272844:0:Tyes0-----
PACN267747:0:Tyes--0---
PAER208963:0:Tyes051443
PAER208964:0:Tno051443
PARC259536:0:Tyes061554
PATL342610:0:Tyes311223111110
PCAR338963:0:Tyes16610701701659
PCRY335284:1:Tyes051443
PDIS435591:0:Tyes3340-02469--
PENT384676:0:Tyes504112
PFLU205922:0:Tyes504112
PFLU216595:1:Tyes435313001
PFLU220664:0:Tyes504112
PFUR186497:0:Tyes1742-0---
PGIN242619:0:Tyes384--0--
PHAL326442:0:Tyes--0---
PHAL326442:1:Tyes-2-110
PHOR70601:0:Tyes0-----
PING357804:0:Tyes-0820112
PINT246198:1:Tyes1175--00-
PISL384616:0:Tyes-----0
PLUM243265:0:Fyes397823977116910
PLUT319225:0:Tyes1157-0875875876
PMAR146891:0:Tyes--15890-612
PMAR167539:0:Tyes--157300904
PMAR167540:0:Tyes--143500590
PMAR167542:0:Tyes--161700656
PMAR167546:0:Tyes--15850-610
PMAR167555:0:Tyes--180000574
PMAR59920:0:Tno--977138313830
PMAR74546:0:Tyes--15240-585
PMAR74547:0:Tyes--165300520
PMAR93060:0:Tyes--16830-657
PMEN399739:0:Tyes504112
PMOB403833:0:Tyes111-0---
PMUL272843:1:Tyes-2-110
PNAP365044:8:Tyes-07223
PPRO298386:2:Tyes2600263112
PPUT160488:0:Tno051443
PPUT351746:0:Tyes051443
PPUT76869:0:Tno051443
PRUM264731:0:Tyes0-123218811881-
PSP117:0:Tyes-638421888908900
PSP296591:2:Tyes706112
PSP312153:0:Tyes726110
PSP56811:2:Tyes504112
PSTU379731:0:Tyes504112
PSYR205918:0:Tyes504112
PSYR223283:2:Tyes072665
PTHE370438:0:Tyes472-0422422423
RALB246199:0:Tyes---3652-0
RCAS383372:0:Tyes--1783002
RDEN375451:4:Tyes3-0283328332832
RETL347834:5:Tyes--0-257256
REUT264198:3:Tyes061554
REUT381666:2:Tyes061554
RFER338969:1:Tyes11010223
RLEG216596:6:Tyes--0-272271
RMET266264:1:Tyes---00-
RMET266264:2:Tyes061--4
RPAL258594:0:Tyes178-392110
RPAL316055:0:Tyes2436250253733001
RPAL316056:0:Tyes909-6620434435
RPAL316057:0:Tyes595-59459610
RPAL316058:0:Tyes--4016414301
RPOM246200:1:Tyes2092-2090001
RRUB269796:1:Tyes0-1371137113712
RSAL288705:0:Tyes--356-10
RSOL267608:1:Tyes071665
RSP101510:3:Fyes0-2702611861186119
RSP357808:0:Tyes--0154315431545
RSPH272943:4:Tyes231202309952952951
RSPH349101:2:Tno227002267926926925
RSPH349102:5:Tyes245002453120812081207
RXYL266117:0:Tyes1-0112311231122
SACI56780:0:Tyes561854-004
SAGA205921:0:Tno-----0
SAGA208435:0:Tno-----0
SAGA211110:0:Tyes-----0
SALA317655:1:Tyes184501847150115011502
SARE391037:0:Tyes--147900-
SAUR158878:1:Tno--01086--
SAUR158879:1:Tno--0993--
SAUR196620:0:Tno--01089--
SAUR273036:0:Tno--0977--
SAUR282458:0:Tno--01122--
SAUR282459:0:Tno--01071--
SAUR359786:1:Tno--01117--
SAUR359787:1:Tno--01113--
SAUR367830:3:Tno--01035--
SAUR418127:0:Tyes--01078--
SAUR426430:0:Tno--01027--
SAUR93061:0:Fno--01143--
SAUR93062:1:Tno--01054--
SAVE227882:1:Fyes70-0678678-
SBAL399599:3:Tyes030291302830283027
SBAL402882:1:Tno029271292629262925
SBOY300268:1:Tyes272429252725029242923
SCO:2:Fyes493-543110
SDEG203122:0:Tyes051443
SDEN318161:0:Tyes259802597112
SDYS300267:1:Tyes2868-2867031393140
SELO269084:0:Tyes--400361
SENT209261:0:Tno7431480742014811482
SENT220341:0:Tno277735162776035173518
SENT295319:0:Tno8339838320982981
SENT321314:2:Tno288930422888030413040
SENT454169:2:Tno302831853027031843183
SEPI176279:1:Tyes---0--
SEPI176280:0:Tno--11580--
SERY405948:0:Tyes3562-3563-0-
SFLE198214:0:Tyes280929682808029672966
SFLE373384:0:Tno273328802732028792878
SFUM335543:0:Tyes15930-10871087-
SGLO343509:3:Tyes-665-017131712
SGOR29390:0:Tyes---0-6
SHAE279808:0:Tyes--0---
SHAL458817:0:Tyes031151311431143113
SHIGELLA:0:Tno274535582744035593560
SLAC55218:1:Fyes2-0206520652064
SLOI323850:0:Tyes8290830112
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