CANDIDATE ID: 501

CANDIDATE ID: 501

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9894787e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12313 (yacF) (b0102)
   Products of gene:
     - EG12313-MONOMER (conserved protein)

- EG12107 (ppdD) (b0108)
   Products of gene:
     - EG12107-MONOMER (prepilin peptidase dependent protein)

- EG11546 (nadC) (b0109)
   Products of gene:
     - QUINOPRIBOTRANS-MONOMER (quinolinate phosphoribosyltransferase (decarboxylating) monomer)
     - QUINOPRIBOTRANS-CPLX (quinolinate phosphoribosyltransferase)
       Reactions:
        5-phospho-alpha-D-ribose 1-diphosphate + quinolinate + 2 H+  ->  CO2 + diphosphate + nicotinate mononucleotide
         In pathways
         PWY0-781 (aspartate superpathway)
         PWY-3502 (PWY-3502)
         NADSYN-PWY (NADSYN-PWY)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))
         PWY-5653 (PWY-5653)

- EG11088 (pdhR) (b0113)
   Products of gene:
     - EG11088-MONOMER (PdhR transcriptional dual regulator)
       Regulatees:
        TU0-7806 (hemL)
        TU0-12943 (tomB-hha)
        TU00101 (cyoABCDE)
        TU00158 (ndh)
        TU0-1143 (yfiD)
        TU00151 (fecABCDE)
        TU00522 (pdhR-aceEF-lpdA)
     - MONOMER-59 (PdhR-pyruvate)

- EG10042 (ampE) (b0111)
   Products of gene:
     - EG10042-MONOMER (predicted inner membrane protein)

- EG10041 (ampD) (b0110)
   Products of gene:
     - EG10041-MONOMER (N-acetyl-anhydromuramyl-L-alanine-amidase)
       Reactions:
        GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-DAP-D-Ala + H2O  ->  glcNAc-1,6-anhMurNAc + L-Ala-gamma-D-Glu-DAP-D-Ala
        a peptidoglycan + H2O  =  N-acetylmuramate + a peptide



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 78
Effective number of orgs (counting one per cluster within 468 clusters): 42

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VVUL216895 ncbi Vibrio vulnificus CMCP65
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2175
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1345
PSP296591 ncbi Polaromonas sp. JS6665
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
ILOI283942 ncbi Idiomarina loihiensis L2TR6
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
BVIE269482 ncbi Burkholderia vietnamiensis G45
BMAL243160 ncbi Burkholderia mallei ATCC 233445
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15


Names of the homologs of the genes in the group in each of these orgs
  EG12313   EG12107   EG11546   EG11088   EG10042   EG10041   
YPSE349747 YPSIP31758_3375YPSIP31758_3370YPSIP31758_3369YPSIP31758_3364YPSIP31758_3367YPSIP31758_3368
YPSE273123 YPTB0701YPTB0707YPTB0708YPTB0712YPTB0710YPTB0709
YPES386656 YPDSF_2924YPDSF_2929YPDSF_2930YPDSF_2934YPDSF_2932YPDSF_2931
YPES377628 YPN_0658YPN_0663YPN_0664YPN_0668YPN_0666YPN_0665
YPES360102 YPA_2932YPA_2927YPA_2926YPA_2922YPA_2924YPA_2925
YPES349746 YPANGOLA_A1046YPANGOLA_A1041YPANGOLA_A1040YPANGOLA_A1035YPANGOLA_A1038YPANGOLA_A1039
YPES214092 YPO3431YPO3425YPO3424YPO3420YPO3422YPO3423
YPES187410 Y0756Y0761Y0762Y0766Y0764Y0763
YENT393305 YE0684YE0690YE0691YE0698YE0693YE0692
VVUL216895 VV1_1620VV1_1626VV1_1627VV1_1629VV1_1628
VPAR223926 VP2528VP2523VP2522VP2520VP2521
VFIS312309 VF2190VF2185VF2184VF2182VF2183
VCHO345073 VC0395_A2005VC0395_A1999VC0395_A1998VC0395_A1991VC0395_A1997
VCHO VC2428VC2423VC2422VC2415VC2421
STYP99287 STM0139STM0144STM0145STM0151STM0147STM0146
SSP94122 SHEWANA3_0415SHEWANA3_0422SHEWANA3_0425SHEWANA3_0424SHEWANA3_0423
SSON300269 SSO_0110SSO_0116SSO_0117SSO_0121SSO_0119SSO_0118
SSED425104 SSED_0421SSED_0426SSED_0427SSED_0430SSED_0429SSED_0428
SPRO399741 SPRO_0773SPRO_0778SPRO_0779SPRO_4012SPRO_0780SPRO_1659
SPEA398579 SPEA_0409SPEA_0415SPEA_0418SPEA_0417SPEA_0416
SLOI323850 SHEW_3442SHEW_3435SHEW_3432SHEW_3433SHEW_3434
SHIGELLA YACFPPDDNADCPDHRAMPEAMPD
SHAL458817 SHAL_0466SHAL_0471SHAL_0472SHAL_0475SHAL_0474SHAL_0473
SGLO343509 SG0460SG0463SG0464SG0466SG0782
SFLE373384 SFV_0094SFV_0099SFV_0100SFV_0104SFV_0102SFV_0101
SFLE198214 AAN41764.1AAN41769.1AAN41770.1AAN41774.1AAN41772.1AAN41771.1
SENT454169 SEHA_C0152SEHA_C0158SEHA_C0159SEHA_C0165SEHA_C0161SEHA_C0160
SENT321314 SCH_0138SCH_0143SCH_0144SCH_0150SCH_0146SCH_0145
SENT295319 SPA0143SPA0148SPA0149SPA0155SPA0151SPA0150
SENT220341 STY0161STY0166STY0167STY0174STY0169STY0168
SENT209261 T0145T0150T0151T0157T0153T0152
SDYS300267 SDY_0132SDY_0138SDY_0139SDY_0143SDY_0141SDY_0140
SDEN318161 SDEN_3393SDEN_3387SDEN_3384SDEN_3385SDEN_3386
SBOY300268 SBO_0090SBO_0098SBO_0102SBO_0100SBO_0099
SBAL402882 SHEW185_3946SHEW185_3939SHEW185_3935SHEW185_3936SHEW185_3937
SBAL399599 SBAL195_4064SBAL195_4058SBAL195_4055SBAL195_4056SBAL195_4057
RFER338969 RFER_2906RFER_1265RFER_1318RFER_0202RFER_3346
REUT381666 H16_A3259H16_A0550H16_A3037H16_B0094H16_A2713H16_A3236
REUT264198 REUT_A2964REUT_A0533REUT_A2736REUT_B5449REUT_A2942
PSP296591 BPRO_0845BPRO_4674BPRO_0902BPRO_4884BPRO_1109
PLUM243265 PLU3642PLU3638PLU3637PLU3624PLU3636PLU2790
PING357804 PING_1160PING_0478PING_1158PING_2928PING_2940
PHAL326442 PSHAA0384PSHAA0386PSHAA0390PSHAA0389PSHAA0388
PATL342610 PATL_3340PATL_3344PATL_3345PATL_3349PATL_3348PATL_3347
KPNE272620 GKPORF_B4385GKPORF_B4391GKPORF_B4392GKPORF_B4399GKPORF_B4394GKPORF_B4393
ILOI283942 IL0448IL0453IL0454IL0457IL0456IL0455
ESP42895 ENT638_0647ENT638_0652ENT638_0653ENT638_0659ENT638_0655ENT638_0654
EFER585054 EFER_0123EFER_0128EFER_0129EFER_0133EFER_0131EFER_0130
ECOO157 YACFPPDDNADCPDHRAMPEAMPD
ECOL83334 ECS0106ECS0112ECS0113ECS0117ECS0115ECS0114
ECOL585397 ECED1_0101ECED1_0106ECED1_0107ECED1_0117ECED1_0109ECED1_0108
ECOL585057 ECIAI39_0103ECIAI39_0108ECIAI39_0109ECIAI39_0113ECIAI39_0111ECIAI39_0110
ECOL585056 ECUMN_0100ECUMN_0105ECUMN_0106ECUMN_0110ECUMN_0108ECUMN_0107
ECOL585055 EC55989_0096EC55989_0101EC55989_0102EC55989_0106EC55989_0104EC55989_0103
ECOL585035 ECS88_0105ECS88_0110ECS88_0111ECS88_0121ECS88_0113ECS88_0112
ECOL585034 ECIAI1_0100ECIAI1_0105ECIAI1_0106ECIAI1_0110ECIAI1_0108ECIAI1_0107
ECOL481805 ECOLC_3556ECOLC_3551ECOLC_3550ECOLC_3546ECOLC_3548ECOLC_3549
ECOL469008 ECBD_3516ECBD_3511ECBD_3510ECBD_3506ECBD_3508ECBD_3509
ECOL439855 ECSMS35_0106ECSMS35_0111ECSMS35_0112ECSMS35_0123ECSMS35_0114ECSMS35_0113
ECOL413997 ECB_00102ECB_00107ECB_00108ECB_00112ECB_00110ECB_00109
ECOL409438 ECSE_0103ECSE_0108ECSE_0109ECSE_0113ECSE_0111ECSE_0110
ECOL405955 APECO1_1886APECO1_1881APECO1_1880APECO1_1872APECO1_1878APECO1_1879
ECOL364106 UTI89_C0110UTI89_C0115UTI89_C0117UTI89_C0125UTI89_C0119UTI89_C0118
ECOL362663 ECP_0103ECP_0108ECP_0109ECP_0119ECP_0111ECP_0110
ECOL331111 ECE24377A_0104ECE24377A_0110ECE24377A_0111ECE24377A_0115ECE24377A_0113ECE24377A_0112
ECOL316407 ECK0102:JW0099:B0102ECK0107:JW0104:B0108ECK0108:JW0105:B0109ECK0112:JW0109:B0113ECK0110:JW0107:B0111ECK0109:JW0106:B0110
ECOL199310 C0122C0127C0128C0140C0130C0129
ECAR218491 ECA3803ECA3798ECA3797ECA3790ECA3794ECA3795
CVIO243365 CV_3824CV_4209CV_1588CV_3037CV_0566
CPSY167879 CPS_4451CPS_4444CPS_4813CPS_4809CPS_4810CPS_4811
CBUR434922 COXBU7E912_1956COXBU7E912_1950COXBU7E912_2010COXBU7E912_1615COXBU7E912_1701
CBUR360115 COXBURSA331_A0242COXBURSA331_A0248COXBURSA331_A0184COXBURSA331_A0568COXBURSA331_A0488
CBUR227377 CBU_0150CBU_0156CBU_0098CBU_0460CBU_0379
BVIE269482 BCEP1808_0549BCEP1808_2156BCEP1808_2583BCEP1808_2855BCEP1808_0569
BMAL243160 BMA_2535BMA_0278BMA_2235BMA_A1432BMA_2511
ASAL382245 ASA_0409ASA_0414ASA_0415ASA_0418ASA_0417
AHYD196024 AHA_3873AHA_3868AHA_3867AHA_3864AHA_3865
AEHR187272 MLG_2083MLG_0249MLG_2097MLG_2283MLG_0224


Organism features enriched in list (features available for 75 out of the 78 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0006626392
Arrangment:Pairs 0.000040728112
Arrangment:Singles 0.004085547286
Disease:Bubonic_plague 3.789e-666
Disease:Dysentery 3.789e-666
Disease:Gastroenteritis 2.730e-6913
Disease:Urinary_tract_infection 0.007200234
GC_Content_Range4:0-40 1.010e-132213
GC_Content_Range4:40-60 1.850e-2166224
GC_Content_Range4:60-100 0.00021647145
GC_Content_Range7:30-40 9.461e-102166
GC_Content_Range7:40-50 0.000033329117
GC_Content_Range7:50-60 2.366e-1137107
GC_Content_Range7:60-70 0.00076617134
Genome_Size_Range5:2-4 2.735e-86197
Genome_Size_Range5:4-6 7.617e-2866184
Genome_Size_Range9:2-3 0.00008184120
Genome_Size_Range9:3-4 0.0009506277
Genome_Size_Range9:4-5 1.913e-113596
Genome_Size_Range9:5-6 1.442e-93188
Gram_Stain:Gram_Neg 5.870e-1672333
Habitat:Multiple 0.003091533178
Motility:No 9.826e-74151
Motility:Yes 4.302e-856267
Optimal_temp.:25 0.007200234
Optimal_temp.:28-30 0.006026447
Oxygen_Req:Aerobic 3.798e-94185
Oxygen_Req:Anaerobic 3.351e-61102
Oxygen_Req:Facultative 1.294e-2768201
Pathogenic_in:Human 0.000016544213
Pathogenic_in:No 3.660e-612226
Pathogenic_in:Rodent 0.006026447
Shape:Coccus 0.0000705182
Shape:Rod 1.360e-967347
Temp._range:Mesophilic 0.008526568473
Temp._range:Psychrophilic 0.002348759



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 316
Effective number of orgs (counting one per cluster within 468 clusters): 254

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG12313   EG12107   EG11546   EG11088   EG10042   EG10041   
ZMOB264203 ZMO1870
WSUC273121 WS1273
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0985
TTHE262724 TT_C0621
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014 TK0218
TFUS269800 TFU_2883
TERY203124 TERY_4352
TELO197221 TLL1713
TDEN326298 TMDEN_0668
TDEN243275
TACI273075
SWOL335541 SWOL_0107
STRO369723 STROP_4279
STOK273063 ST1198
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW2320OR2548
SSP64471 GSYN2844
SSP387093 SUN_1979
SSP321332 CYB_2483
SSP321327 CYA_0945
SSP1148 SLR0936
SSP1131 SYNCC9605_2452
SSOL273057
SSAP342451
SRUB309807 SRU_1913
SPYO370554 MGAS10750_SPY1186
SPYO370553 MGAS2096_SPY0181
SPYO370552 MGAS10270_SPY0173
SPYO370551 MGAS9429_SPY0172
SPYO319701 M28_SPY0168
SPYO293653 M5005_SPY0170
SPYO286636 M6_SPY1061
SPYO198466 SPYM3_1013
SPYO193567 SPS0845
SPYO186103 SPYM18_1346
SPYO160490 SPY0197
SPNE487214 SPH_2171
SPNE487213 SPT_2013
SPNE171101 SPR1829
SPNE170187 SPN20073
SPNE1313 SPJ_2023
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084 SYC0591_C
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037 SARE_4714
SAGA211110
SAGA208435
SAGA205921
SACI56780 SYN_02885
SACI330779 SACI_0547
RTYP257363
RSAL288705
RRIC452659 RRIOWA_1588
RRIC392021 A1G_07455
RPRO272947
RMAS416276 RMA_1348
RFEL315456 RF_1384
RCON272944 RC1358
RCAN293613 A1E_05615
RBEL391896
RBEL336407
RALB246199 GRAORF_0936
RAKA293614 A1C_06790
PTOR263820
PSP117 RB6623
PRUM264731 GFRORF0740
PPEN278197
PMOB403833
PMAR93060 P9215_02061
PMAR74547 PMT2073
PMAR74546 PMT9312_0190
PMAR59920 PMN2A_1555
PMAR167555 NATL1_02631
PMAR167546 P9301ORF_0210
PMAR167542 P9515ORF_0224
PMAR167540 PMM0188
PMAR167539 PRO_0213
PMAR146891 A9601_02061
PLUT319225 PLUT_0270
PISL384616
PINT246198 PIN_A1989
PHOR70601 PH0011
PGIN242619 PG_1577
PFUR186497
PDIS435591 BDI_2086
PCAR338963 PCAR_1972
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844 PAB2347
OTSU357244 OTBS_0048
NSP387092 NIS_0415
NSP103690 ALL2091
NSEN222891
NPHA348780
MVAN350058 MVAN_2800
MTUB419947 MRA_1606
MTUB336982 TBFG_11612
MTHE349307
MTHE264732 MOTH_2304
MTHE187420
MTBRV RV1596
MTBCDC MT1632
MSYN262723
MSTA339860
MSP189918 MKMS_3126
MSP164757 MJLS_3083
MSP164756 MMCS_3066
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1227
MLAB410358
MKAN190192 MK0446
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_3617
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_1634
MBOV233413 MB1622
MBAR269797 MBAR_A1867
MAVI243243 MAV_3189
MART243272
MAER449447 MAE_18550
MAEO419665
MACE188937
MABS561007 MAB_2672C
LXYL281090 LXX16510
LWEL386043 LWE0926
LSPH444177 BSPH_4290
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253 LI0360
LINT267671 LIC_11011
LINT189518 LA3085
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940 KRAD_3559
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP1273
HPYL357544 HPAG1_1302
HPY HP1355
HMUK485914
HMAR272569
HHEP235279
HBUT415426
HACI382638 HAC_0200
GVIO251221 GLL0888
GOXY290633
GMET269799 GMET_1988
GFOR411154 GFO_1102
FSUC59374 FSU2800
FSP1855 FRANEAN1_0197
FSP106370 FRANCCI3_4378
FNOD381764
FMAG334413
FALN326424 FRAAL6673
ERUM302409 ERGA_CDS_00010
ERUM254945 ERWE_CDS_00010
EFAE226185
ECHA205920 ECH_0026
ECAN269484 ECAJ_0006
DSP255470 CBDBA1336
DSP216389 DEHABAV1_1192
DRAD243230 DR_1905
DOLE96561 DOLE_1728
DGEO319795 DGEO_1163
DETH243164 DET_1382
CVES412965 COSY_0109
CTRA471473
CTRA471472
CTET212717 CTC_00971
CTEP194439 CT_1936
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3829
CPER289380 CPR_0378
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798 CHU_3729
CHOM360107
CGLU196627 CG1215
CFET360106 CFF8240_0821
CFEL264202
CEFF196164 CE1115
CDIP257309 DIP2259
CDES477974 DAUD_0123
CCUR360105
CCON360104
CCHL340177 CAG_0234
CCAV227941
CBOT508765 CLL_A0360
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTRI382640 BT_1904
BTHE226186 BT_1560
BSP107806
BQUI283165
BLON206672 BL1376
BHER314723
BHEN283166 BH12510
BGAR290434
BFRA295405 BF1469
BFRA272559 BF1400
BCIC186490 BCI_0513
BBUR224326
BBAC360095 BARBAKC583_0904
BBAC264462 BD2762
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_3136
AURANTIMONAS
APHA212042 APH_0016
APER272557
AORE350688
ANAE240017
AMAR329726 AM1_4618
AMAR234826 AM1297
ALAI441768
AFUL224325
ADEH290397 ADEH_2389
ACEL351607 ACEL_0214
ABUT367737 ABU_2036
ABAC204669 ACID345_0133
AAUR290340 AAUR_2532
AAEO224324 AQ_869


Organism features enriched in list (features available for 297 out of the 316 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 8.320e-61717
Arrangment:Pairs 0.005655846112
Disease:Pharyngitis 0.004328788
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00054681111
Disease:Wide_range_of_infections 0.00054681111
Disease:bronchitis_and_pneumonitis 0.004328788
Endospores:No 9.235e-22162211
Endospores:Yes 7.626e-61253
GC_Content_Range4:0-40 1.851e-19160213
GC_Content_Range4:40-60 0.000056292224
GC_Content_Range4:60-100 4.656e-944145
GC_Content_Range7:0-30 0.00105343447
GC_Content_Range7:30-40 7.522e-15126166
GC_Content_Range7:50-60 2.219e-731107
GC_Content_Range7:60-70 1.101e-938134
Genome_Size_Range5:0-2 1.041e-34141155
Genome_Size_Range5:2-4 0.0026121115197
Genome_Size_Range5:4-6 1.032e-2833184
Genome_Size_Range5:6-10 4.993e-7847
Genome_Size_Range9:0-1 6.724e-92727
Genome_Size_Range9:1-2 1.026e-24114128
Genome_Size_Range9:2-3 1.160e-684120
Genome_Size_Range9:4-5 6.440e-121996
Genome_Size_Range9:5-6 1.526e-131488
Genome_Size_Range9:6-8 0.0000171738
Gram_Stain:Gram_Neg 5.733e-22113333
Gram_Stain:Gram_Pos 2.490e-8105150
Habitat:Host-associated 0.0000112129206
Habitat:Multiple 1.090e-762178
Habitat:Specialized 0.00025813953
Habitat:Terrestrial 0.0006868731
Motility:No 4.181e-11111151
Motility:Yes 1.453e-1687267
Optimal_temp.:25-30 0.0002022219
Optimal_temp.:30-37 0.00350401518
Oxygen_Req:Aerobic 0.001090278185
Oxygen_Req:Anaerobic 6.435e-774102
Oxygen_Req:Facultative 0.000125082201
Pathogenic_in:Animal 0.00101572266
Shape:Coccus 1.465e-116982
Shape:Irregular_coccus 8.320e-61717
Shape:Rod 3.039e-27114347
Shape:Sphere 0.00036261719
Shape:Spiral 2.515e-63034
Temp._range:Hyperthermophilic 2.838e-62223
Temp._range:Mesophilic 0.0019401228473
Temp._range:Thermophilic 0.00602382535



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73460.5559
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.5315
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50360.5309
AST-PWY (arginine degradation II (AST pathway))120580.5286
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218770.5055
THREONINE-DEG2-PWY (threonine degradation II)214750.4924
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176670.4844
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37280.4795
SORBDEG-PWY (sorbitol degradation II)53340.4757
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4711
ECASYN-PWY (enterobacterial common antigen biosynthesis)191680.4638
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121520.4518
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91440.4478
RHAMCAT-PWY (rhamnose degradation)91440.4478
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195670.4454
PWY-6196 (serine racemization)102460.4356
PWY-46 (putrescine biosynthesis III)138540.4289
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22190.4269
LACTOSEUTIL-PWY (lactose degradation II)53310.4236
LYXMET-PWY (L-lyxose degradation)87410.4213
GLYCOCAT-PWY (glycogen degradation I)246730.4187
PWY0-1182 (trehalose degradation II (trehalase))70360.4183
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81390.4162
GLUCONSUPER-PWY (D-gluconate degradation)229700.4158
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)249730.4141
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)249730.4141
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19170.4124
ARABCAT-PWY (L-arabinose degradation I)128500.4078
MANNIDEG-PWY (mannitol degradation I)99430.4060
LIPASYN-PWY (phospholipases)212660.4039
PWY-5833 (CDP-3,6-dideoxyhexose biosynthesis)14140.4008
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))4018-.4274



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12107   EG11546   EG11088   EG10042   EG10041   
EG123130.9987760.9989380.9987270.9986860.998925
EG121070.9990730.9986490.9987540.999004
EG115460.9988040.999210.999305
EG110880.9990910.998986
EG100420.99929
EG10041



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PAIRWISE BLAST SCORES:

  EG12313   EG12107   EG11546   EG11088   EG10042   EG10041   
EG123130.0f0-----
EG12107-0.0f0----
EG11546--0.0f0---
EG11088---0.0f0--
EG10042----0.0f0-
EG10041-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10041 EG10042 EG11088 EG11546 EG12107 (centered at EG10041)
EG12313 (centered at EG12313)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12313   EG12107   EG11546   EG11088   EG10042   EG10041   
124/623122/623407/623217/62372/623254/623
AAEO224324:0:Tyes--0---
AAUR290340:2:Tyes--0---
AAVE397945:0:Tyes276937512933--0
ABAC204669:0:Tyes--0---
ABAU360910:0:Tyes2604-2500--0
ABOR393595:0:Tyes-02--5
ABUT367737:0:Tyes--0---
ACAU438753:0:Tyes--16650-3781
ACEL351607:0:Tyes--0---
ACRY349163:8:Tyes--0--1355
ADEH290397:0:Tyes--0---
AEHR187272:0:Tyes18462518602046-0
AFER243159:0:Tyes2290-367--0
AHYD196024:0:Tyes9430-1
AMAR234826:0:Tyes--0---
AMAR329726:9:Tyes--0---
AMET293826:0:Tyes--03655--
APHA212042:0:Tyes--0---
APLE416269:0:Tyes-564---0
APLE434271:0:Tno-536---0
ASAL382245:5:Tyes0458-7
ASP1667:3:Tyes--17320--
ASP232721:2:Tyes0-2606--2740
ASP62928:0:Tyes0-1384456-2667
ASP62977:0:Tyes-3047041-1
ASP76114:2:Tyes236302874--2253
AVAR240292:3:Tyes--0---
BABO262698:0:Tno---0--
BABO262698:1:Tno-----0
BAMB339670:3:Tno0-21292380-20
BAMB398577:3:Tno0-19502196-20
BAMY326423:0:Tyes--0658--
BANT260799:0:Tno--30880--
BANT261594:2:Tno--30820--
BANT568206:2:Tyes--13510--
BANT592021:2:Tno--32610--
BBAC264462:0:Tyes--0---
BBAC360095:0:Tyes-----0
BBRO257310:0:Tyes4378-42310-408
BCAN483179:0:Tno---0--
BCAN483179:1:Tno-----0
BCEN331271:0:Tno---0--
BCEN331271:2:Tno0-1829--20
BCEN331272:1:Tyes---0--
BCEN331272:3:Tyes0-1927--19
BCER226900:1:Tyes--30520--
BCER288681:0:Tno--29600--
BCER315749:1:Tyes--20180--
BCER405917:1:Tyes--29280--
BCER572264:1:Tno--31490--
BCIC186490:0:Tyes--0---
BCLA66692:0:Tyes--02502--
BFRA272559:1:Tyes--0---
BFRA295405:0:Tno--0---
BHAL272558:0:Tyes--0620--
BHEN283166:0:Tyes-----0
BJAP224911:0:Fyes--0--4097
BLIC279010:0:Tyes--0728--
BLON206672:0:Tyes--0---
BMAL243160:0:Tno---0--
BMAL243160:1:Tno200701726--1985
BMAL320388:1:Tno75-22170-52
BMAL320389:0:Tyes---0--
BMAL320389:1:Tyes1125-0--1148
BMEL224914:0:Tno---0--
BMEL224914:1:Tno-----0
BMEL359391:0:Tno---0--
BMEL359391:1:Tno-----0
BOVI236:0:Tyes---0--
BOVI236:1:Tyes-----0
BPAR257311:0:Tno3703-35880-392
BPER257313:0:Tyes3387-3300--0
BPET94624:0:Tyes0-934379-3840
BPSE272560:0:Tyes---0--
BPSE272560:1:Tyes2114-0--2095
BPSE320372:0:Tno---0--
BPSE320372:1:Tno2500-0--2478
BPSE320373:0:Tno---0--
BPSE320373:1:Tno2441-0--2408
BPUM315750:0:Tyes--0652--
BSP36773:2:Tyes0-22212465-20
BSP376:0:Tyes--0--1079
BSUB:0:Tyes--0680--
BSUI204722:0:Tyes---0--
BSUI204722:1:Tyes-----0
BSUI470137:0:Tno---0--
BSUI470137:1:Tno-----0
BTHA271848:0:Tno---0--
BTHA271848:1:Tno348-0--367
BTHE226186:0:Tyes--0---
BTHU281309:1:Tno--29520--
BTHU412694:1:Tno--27110--
BTRI382640:1:Tyes-----0
BVIE269482:7:Tyes0159720172285-20
BWEI315730:4:Tyes--29710--
BXEN266265:0:Tyes-----0
BXEN266265:1:Tyes---0--
CACE272562:1:Tyes--01505--
CAULO:0:Tyes--355--0
CBEI290402:0:Tyes--04134--
CBOT36826:1:Tno--070--
CBOT441770:0:Tyes--068--
CBOT441771:0:Tno--070--
CBOT441772:1:Tno--069--
CBOT498213:1:Tno--069--
CBOT508765:1:Tyes---0--
CBOT515621:2:Tyes--068--
CBOT536232:0:Tno--0143--
CBUR227377:1:Tyes50560-348270
CBUR360115:1:Tno57630-360282
CBUR434922:2:Tno320314372-082
CCHL340177:0:Tyes--0---
CDES477974:0:Tyes--0---
CDIF272563:1:Tyes--01208--
CDIP257309:0:Tyes--0---
CEFF196164:0:Fyes--0---
CFET360106:0:Tyes--0---
CGLU196627:0:Tyes--0---
CHUT269798:0:Tyes--0---
CHYD246194:0:Tyes--18780--
CJAP155077:0:Tyes--70--0
CKLU431943:1:Tyes--01756--
CNOV386415:0:Tyes--9080--
CPEL335992:0:Tyes--595--0
CPER195102:1:Tyes--870--
CPER195103:0:Tno--760--
CPER289380:3:Tyes--0---
CPHY357809:0:Tyes---0--
CPSY167879:0:Tyes70360356357358
CRUT413404:0:Tyes--0--880
CSAL290398:0:Tyes-18224640-465
CSP501479:6:Fyes---0--
CSP501479:8:Fyes-----0
CSP78:2:Tyes--25050-1867
CTEP194439:0:Tyes--0---
CTET212717:0:Tyes---0--
CVES412965:0:Tyes--0---
CVIO243365:0:Tyes3345375010602526-0
DARO159087:0:Tyes3065-17311120-0
DDES207559:0:Tyes--5980--
DETH243164:0:Tyes--0---
DGEO319795:1:Tyes--0---
DHAF138119:0:Tyes--02103-1995
DNOD246195:0:Tyes0----872
DOLE96561:0:Tyes--0---
DPSY177439:2:Tyes-0348---
DRAD243230:3:Tyes---0--
DRED349161:0:Tyes--02046--
DSHI398580:5:Tyes---244-0
DSP216389:0:Tyes--0---
DSP255470:0:Tno--0---
DVUL882:1:Tyes--0971--
ECAN269484:0:Tyes--0---
ECAR218491:0:Tyes1387045
ECHA205920:0:Tyes--0---
ECOL199310:0:Tno0561687
ECOL316407:0:Tno0561087
ECOL331111:6:Tno045976
ECOL362663:0:Tno0561687
ECOL364106:1:Tno0571598
ECOL405955:2:Tyes0561487
ECOL409438:6:Tyes0561087
ECOL413997:0:Tno0561087
ECOL439855:4:Tno0561687
ECOL469008:0:Tno1054023
ECOL481805:0:Tno1054023
ECOL585034:0:Tno0561087
ECOL585035:0:Tno0561487
ECOL585055:0:Tno0561087
ECOL585056:2:Tno0671198
ECOL585057:0:Tno0561087
ECOL585397:0:Tno0561487
ECOL83334:0:Tno0671198
ECOLI:0:Tno0561087
ECOO157:0:Tno0671198
EFER585054:1:Tyes0561087
ELIT314225:0:Tyes--2329--0
ERUM254945:0:Tyes--0---
ERUM302409:0:Tno--0---
ESP42895:1:Tyes0561287
FALN326424:0:Tyes--0---
FJOH376686:0:Tyes--0--1456
FNUC190304:0:Tyes--0--154
FPHI484022:1:Tyes-01473--664
FRANT:0:Tno-6781223--0
FSP106370:0:Tyes--0---
FSP1855:0:Tyes--0---
FSUC59374:0:Tyes--0---
FTUL351581:0:Tno--0--311
FTUL393011:0:Tno-0797--1061
FTUL393115:0:Tyes-6701199--0
FTUL401614:0:Tyes--0--851
FTUL418136:0:Tno-882339--0
FTUL458234:0:Tno-0817--1099
GBET391165:0:Tyes--202--0
GFOR411154:0:Tyes--0---
GKAU235909:1:Tyes--5920--
GMET269799:1:Tyes--0---
GSUL243231:0:Tyes--3080--
GTHE420246:1:Tyes--21240--
GURA351605:0:Tyes--6200--
GVIO251221:0:Tyes--0---
HACI382638:1:Tyes--0---
HARS204773:0:Tyes161114440--1590
HAUR316274:2:Tyes--1118--0
HCHE349521:0:Tyes--6240-627
HDUC233412:0:Tyes-0---538
HHAL349124:0:Tyes828-846--0
HINF281310:0:Tyes-0---1
HINF374930:0:Tyes-2---0
HINF71421:0:Tno-0---1
HMOD498761:0:Tyes--01055--
HNEP81032:0:Tyes--208--0
HPY:0:Tno--0---
HPYL357544:1:Tyes--0---
HPYL85963:0:Tno--0---
HSOM205914:1:Tyes-1---0
HSOM228400:0:Tno-1---0
ILOI283942:0:Tyes056987
JSP290400:1:Tyes---450-0
JSP375286:0:Tyes10098650--989
KPNE272620:2:Tyes0671498
KRAD266940:2:Fyes--0---
LCHO395495:0:Tyes1651041542--0
LINN272626:1:Tno--12110--
LINT189518:1:Tyes--0---
LINT267671:1:Tno--0---
LINT363253:3:Tyes--0---
LMON169963:0:Tno--11040--
LMON265669:0:Tyes--10740--
LPNE272624:0:Tno65811060---
LPNE297245:1:Fno71610350---
LPNE297246:1:Fyes55410270---
LPNE400673:0:Tno04771573---
LSPH444177:1:Tyes--0---
LWEL386043:0:Tyes---0--
LXYL281090:0:Tyes--0---
MABS561007:1:Tyes--0---
MAER449447:0:Tyes--0---
MAQU351348:2:Tyes--5810-583
MAVI243243:0:Tyes--0---
MBAR269797:1:Tyes--0---
MBOV233413:0:Tno--0---
MBOV410289:0:Tno--0---
MCAP243233:0:Tyes55501523--1474
MEXT419610:0:Tyes--1723--0
MFLA265072:0:Tyes2010-1900--0
MGIL350054:3:Tyes--0---
MKAN190192:0:Tyes--0---
MLEP272631:0:Tyes--0---
MLOT266835:2:Tyes--33304227-0
MMAG342108:0:Tyes--36470-621
MMAR394221:0:Tyes--0--1298
MPET420662:1:Tyes44001488--3143
MSME246196:0:Tyes--5920--
MSP164756:1:Tno--0---
MSP164757:0:Tno--0---
MSP189918:2:Tyes--0---
MSP266779:3:Tyes--22040-1670
MSP400668:0:Tyes--22550--
MSP409:2:Tyes--215--0
MSUC221988:0:Tyes-0---1
MTBCDC:0:Tno--0---
MTBRV:0:Tno--0---
MTHE264732:0:Tyes---0--
MTUB336982:0:Tno--0---
MTUB419947:0:Tyes--0---
MVAN350058:0:Tyes--0---
MXAN246197:0:Tyes--3350--0
NARO279238:0:Tyes--0--2870
NEUR228410:0:Tyes0-1543--1604
NEUT335283:2:Tyes500----0
NFAR247156:2:Tyes--1819--0
NGON242231:0:Tyes--12081018-0
NHAM323097:2:Tyes--1523--0
NMEN122586:0:Tno-03591627-624
NMEN122587:0:Tyes-017301612-567
NMEN272831:0:Tno--992873-0
NMEN374833:0:Tno--1113990-0
NMUL323848:3:Tyes576-0--263
NOCE323261:1:Tyes-16470--1
NSP103690:6:Tyes--0---
NSP35761:1:Tyes--01660--
NSP387092:0:Tyes--0---
NWIN323098:0:Tyes--1399--0
OANT439375:4:Tyes---0--
OANT439375:5:Tyes--0--1327
OCAR504832:0:Tyes--1885--0
OIHE221109:0:Tyes---0-478
OTSU357244:0:Fyes-----0
PABY272844:0:Tyes--0---
PAER208963:0:Tyes--2380-0
PAER208964:0:Tno--326001
PARC259536:0:Tyes-0394--1525
PATL342610:0:Tyes045987
PCAR338963:0:Tyes--0---
PCRY335284:1:Tyes-0332--1762
PDIS435591:0:Tyes--0---
PENT384676:0:Tyes--1470150149
PFLU205922:0:Tyes--340-36
PFLU216595:1:Tyes--04318-2
PFLU220664:0:Tyes--3003332
PGIN242619:0:Tyes--0---
PHAL326442:1:Tyes-02654
PHOR70601:0:Tyes--0---
PING357804:0:Tyes66606642299-2311
PINT246198:1:Tyes--0---
PLUM243265:0:Fyes8548508498388480
PLUT319225:0:Tyes--0---
PMAR146891:0:Tyes--0---
PMAR167539:0:Tyes--0---
PMAR167540:0:Tyes--0---
PMAR167542:0:Tyes--0---
PMAR167546:0:Tyes--0---
PMAR167555:0:Tyes--0---
PMAR59920:0:Tno--0---
PMAR74546:0:Tyes--0---
PMAR74547:0:Tyes--0---
PMAR93060:0:Tyes--0---
PMEN399739:0:Tyes--02893-2
PMUL272843:1:Tyes-1---0
PNAP365044:8:Tyes0-169--2633
PPRO298386:2:Tyes8-20-1
PPUT160488:0:Tno--0393632
PPUT351746:0:Tyes--0381332
PPUT76869:0:Tno--0395232
PRUM264731:0:Tyes--0---
PSP117:0:Tyes--0---
PSP296591:2:Tyes03803574006-262
PSP312153:0:Tyes0-939--21
PSP56811:2:Tyes--1466--0
PSTU379731:0:Tyes--2980-291
PSYR205918:0:Tyes-016-1918
PSYR223283:2:Tyes-021-2423
PTHE370438:0:Tyes--02052--
RAKA293614:0:Fyes-----0
RALB246199:0:Tyes--0---
RCAN293613:0:Fyes-----0
RCAS383372:0:Tyes--772--0
RCON272944:0:Tno-----0
RDEN375451:4:Tyes--1920-639
RETL347834:3:Tyes--0---
RETL347834:4:Tyes---0--
RETL347834:5:Tyes-----0
REUT264198:2:Tyes---0--
REUT264198:3:Tyes245002222--2427
REUT381666:1:Tyes---0--
REUT381666:2:Tyes263402413-20932612
RFEL315456:2:Tyes-----0
RFER338969:1:Tyes2704106311160-3144
RLEG216596:4:Tyes--0---
RLEG216596:5:Tyes---0--
RLEG216596:6:Tyes-----0
RMAS416276:1:Tyes-----0
RMET266264:1:Tyes---0--
RMET266264:2:Tyes238-0--215
RPAL258594:0:Tyes--0--2501
RPAL316055:0:Tyes--2284--0
RPAL316056:0:Tyes--2161--0
RPAL316057:0:Tyes--0--2199
RPAL316058:0:Tyes--0--885
RPOM246200:1:Tyes--274260-0
RRIC392021:0:Fno-----0
RRIC452659:0:Tyes-----0
RRUB269796:1:Tyes--472454-0
RSOL267608:1:Tyes1788-14060-1764
RSP101510:2:Fyes---0--
RSP101510:3:Fyes--0---
RSP357808:0:Tyes--0--241
RSPH272943:4:Tyes---1818-0
RSPH349101:2:Tno---1764-0
RSPH349102:5:Tyes---0-2010
RXYL266117:0:Tyes--02472-2094
SACI330779:0:Tyes--0---
SACI56780:0:Tyes--0---
SALA317655:1:Tyes--0--600
SARE391037:0:Tyes--0---
SAVE227882:1:Fyes--34180-5948
SBAL399599:3:Tyes9-3012
SBAL402882:1:Tno10-3012
SBOY300268:1:Tyes0-61087
SCO:2:Fyes--22411284-0
SDEG203122:0:Tyes-010415-12
SDEN318161:0:Tyes9-3012
SDYS300267:1:Tyes0561087
SELO269084:0:Tyes--0---
SENT209261:0:Tno0561287
SENT220341:0:Tno0561287
SENT295319:0:Tno0561287
SENT321314:2:Tno0561287
SENT454169:2:Tno0561287
SERY405948:0:Tyes--18610--
SFLE198214:0:Tyes0561087
SFLE373384:0:Tno045976
SFUM335543:0:Tyes--01315--
SGLO343509:3:Tyes0346-329
SHAL458817:0:Tyes056987
SHIGELLA:0:Tno0561087
SLAC55218:0:Fyes--0---
SLAC55218:1:Fyes---0--
SLOI323850:0:Tyes10-3012
SMED366394:3:Tyes--3090-1689
SMEL266834:2:Tyes---0-1440
SONE211586:1:Tyes0--1098
SPEA398579:0:Tno0-6987
SPNE1313:0:Tyes--0---
SPNE170187:0:Tyes--0---
SPNE171101:0:Tno--0---
SPNE487213:0:Tno--0---
SPNE487214:0:Tno--0---
SPNE488221:0:Tno--0114--
SPRO399741:1:Tyes05632877907
SPYO160490:0:Tno--0---
SPYO186103:0:Tno--0---
SPYO193567:0:Tno--0---
SPYO198466:0:Tno--0---
SPYO286636:0:Tno--0---
SPYO293653:0:Tno--0---
SPYO319701:0:Tyes--0---
SPYO370551:0:Tno--0---
SPYO370552:0:Tno--0---
SPYO370553:0:Tno--0---
SPYO370554:0:Tyes--0---
SRUB309807:1:Tyes--0---
SSED425104:0:Tyes056987
SSON300269:1:Tyes0561087
SSP1131:0:Tyes--0---
SSP1148:0:Tyes--0---
SSP292414:2:Tyes--339685-0
SSP321327:0:Tyes--0---
SSP321332:0:Tyes--0---
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