CANDIDATE ID: 503

CANDIDATE ID: 503

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9917020e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.6666667e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7546 (glcC) (b2980)
   Products of gene:
     - G7546-MONOMER (GlcC transcriptional dual regulator)
     - MONOMER0-562 (GlcC-Glycolate transcriptional dual regulator)
       Regulatees:
        TU0-1962 (glcDEFGBA)
        TU0-1963 (glcC)

- EG11088 (pdhR) (b0113)
   Products of gene:
     - EG11088-MONOMER (PdhR transcriptional dual regulator)
       Regulatees:
        TU0-7806 (hemL)
        TU0-12943 (tomB-hha)
        TU00101 (cyoABCDE)
        TU00158 (ndh)
        TU0-1143 (yfiD)
        TU00151 (fecABCDE)
        TU00522 (pdhR-aceEF-lpdA)
     - MONOMER-59 (PdhR-pyruvate)

- EG10543 (lpd) (b0116)
   Products of gene:
     - E3-MONOMER (E3 monomer)
     - E3-CPLX (lipoamide dehydrogenase)
       Reactions:
        protein N6-(dihydrolipoyl)lysine + NAD+  =  protein N6-(lipoyl)lysine + NADH + H+
        H-Gcv-protein-(dihydrolipoyl)lysine + NAD+  ->  H-Gcv-protein-(lipoyl)lysine + NADH + H+
         In pathways
         GLYCLEAV-PWY (glycine cleavage complex)
        lipoate acetyltransferase N6-(dihydrolipoyl)lysine + NAD+  ->  lipoate acetyltransferase N6-(lipoyl)lysine + NADH + H+
         In pathways
         PWY-5173 (PWY-5173)
         PWY-5464 (PWY-5464)
         PYRUVDEHYD-PWY (acetyl-CoA biosynthesis (from pyruvate))
        dihydrolipoyltranssuccinylase N6-(dihydrolipoyl)lysine + NAD+  ->  dihydrolipoyltranssuccinylase N6-(lipoyl)lysine + NADH + H+
         In pathways
         PWY-5084 (2-ketoglutarate dehydrogenase complex)
     - 2OXOGLUTARATEDEH-CPLX (2-oxoglutarate dehydrogenase complex)
       Reactions:
        2-oxoglutarate + NAD+ + coenzyme A  ->  succinyl-CoA + CO2 + NADH
         In pathways
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)
         TCA-GLYOX-BYPASS (superpathway of glyoxylate bypass and TCA)
         PWY-5464 (PWY-5464)
         TCA (TCA cycle)
         PWY-5690 (PWY-5690)
     - GCVMULTI-CPLX (glycine cleavage system)
       Reactions:
        NAD+ + glycine + tetrahydrofolate + H+  ->  ammonia + CO2 + NADH + 5,10-methylene-THF
         In pathways
         GLYCINE-SYN2-PWY (GLYCINE-SYN2-PWY)
         PWY-2201 (PWY-2201)
         PWY-3841 (PWY-3841)
         1CMET2-PWY (formylTHF biosynthesis I)
         PWY-181 (PWY-181)
     - PYRUVATEDEH-CPLX (pyruvate dehydrogenase multienzyme complex)
       Reactions:
        pyruvate + NAD+ + coenzyme A  ->  acetyl-CoA + CO2 + NADH
         In pathways
         P41-PWY (P41-PWY)
         ANARESP1-PWY (respiration (anaerobic))
         PWY-5482 (PWY-5482)
         PWY-5537 (PWY-5537)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)

- EG10042 (ampE) (b0111)
   Products of gene:
     - EG10042-MONOMER (predicted inner membrane protein)

- EG10025 (aceF) (b0115)
   Products of gene:
     - E2P-MONOMER (lipoate acetyltransferase / dihydrolipoamide acetyltransferase)
       Reactions:
        lipoate acetyltransferase N6-(S-acetyldihydrolipoyl)lysine + coenzyme A  ->  acetyl-CoA + lipoate acetyltransferase N6-(dihydrolipoyl)lysine
         In pathways
         PWY-5173 (PWY-5173)
         PWY-5464 (PWY-5464)
         PYRUVDEHYD-PWY (acetyl-CoA biosynthesis (from pyruvate))
        acetyl-CoA + dihydrolipoamide  =  S-acetyldihydrolipoamide + coenzyme A
     - ACEF-LIPOATE (AceF-lipoate)
     - ACEF-S-ACETYLDIHYDROLIPOATE (AceF-S-acetyldihydrolipoate)
     - ACEF-DIHYDROLIPOATE (AceF-dihydrolipoate)
     - PYRUVATEDEH-CPLX (pyruvate dehydrogenase multienzyme complex)
       Reactions:
        pyruvate + NAD+ + coenzyme A  ->  acetyl-CoA + CO2 + NADH
         In pathways
         P41-PWY (P41-PWY)
         ANARESP1-PWY (respiration (anaerobic))
         PWY-5482 (PWY-5482)
         PWY-5537 (PWY-5537)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)

- EG10024 (aceE) (b0114)
   Products of gene:
     - E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
     - E1P-CPLX (pyruvate dehydrogenase)
       Reactions:
        pyruvate + lipoate acetyltransferase N6-(lipoyl)lysine  ->  lipoate acetyltransferase N6-(S-acetyldihydrolipoyl)lysine + CO2
         In pathways
         PWY-5173 (PWY-5173)
         PWY-5464 (PWY-5464)
         PYRUVDEHYD-PWY (acetyl-CoA biosynthesis (from pyruvate))
        pyruvate + lipoamide + H+  ->  S-acetyldihydrolipoamide + CO2
     - PYRUVATEDEH-CPLX (pyruvate dehydrogenase multienzyme complex)
       Reactions:
        pyruvate + NAD+ + coenzyme A  ->  acetyl-CoA + CO2 + NADH
         In pathways
         P41-PWY (P41-PWY)
         ANARESP1-PWY (respiration (anaerobic))
         PWY-5482 (PWY-5482)
         PWY-5537 (PWY-5537)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 131
Effective number of orgs (counting one per cluster within 468 clusters): 82

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSP644076 Silicibacter sp. TrichCH4B5
SSP292414 ncbi Ruegeria sp. TM10405
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1345
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS95
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L486
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
MSP400668 ncbi Marinomonas sp. MWYL15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MAQU351348 ncbi Marinobacter aquaeolei VT85
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP290400 ncbi Jannaschia sp. CCS15
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HCHE349521 ncbi Hahella chejuensis KCTC 23965
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H6
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBRO257310 ncbi Bordetella bronchiseptica RB505
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715


Names of the homologs of the genes in the group in each of these orgs
  G7546   EG11088   EG10543   EG10042   EG10025   EG10024   
YPSE349747 YPSIP31758_3364YPSIP31758_3364YPSIP31758_3360YPSIP31758_3367YPSIP31758_3362YPSIP31758_3363
YPSE273123 YPTB0712YPTB0712YPTB0715YPTB0710YPTB0714YPTB0713
YPES386656 YPDSF_2934YPDSF_2934YPDSF_2938YPDSF_2932YPDSF_2936YPDSF_2935
YPES377628 YPN_0668YPN_0668YPN_0671YPN_0666YPN_0670YPN_0669
YPES360102 YPA_2922YPA_2922YPA_2919YPA_2924YPA_2920YPA_2921
YPES349746 YPANGOLA_A1035YPANGOLA_A1035YPANGOLA_A1031YPANGOLA_A1038YPANGOLA_A1033YPANGOLA_A1034
YPES214092 YPO3420YPO3420YPO3417YPO3422YPO3418YPO3419
YPES187410 Y0766Y0766Y0769Y0764Y0768Y0767
YENT393305 YE0698YE0698YE0702YE0693YE0701YE0699
XAUT78245 XAUT_4351XAUT_4351XAUT_0159XAUT_0158XAUT_0214
VVUL216895 VV1_1629VV1_1629VV1_1632VV1_1631VV1_1630
VVUL196600 VV2774VV2774VV2771VV2772VV2773
VPAR223926 VP2520VP2520VP2517VP2518VP2519
VFIS312309 VF2182VF2182VF2178VF2179VF2181
VCHO345073 VC0395_A1991VC0395_A1991VC0395_A1988VC0395_A1989VC0395_A1990
VCHO VC2415VC2415VC2412VC2413VC2414
STYP99287 STM0151STM0151STM0154STM0147STM0153STM0152
SSP94122 SHEWANA3_0425SHEWANA3_0425SHEWANA3_0428SHEWANA3_0424SHEWANA3_0427SHEWANA3_0426
SSP644076 SCH4B_2769SCH4B_2769SCH4B_0424SCH4B_0428SCH4B_2956
SSP292414 TM1040_2589TM1040_2589TM1040_3504TM1040_3510TM1040_2736
SSON300269 SSO_0121SSO_0121SSO_0124SSO_0119SSO_0123SSO_0122
SSED425104 SSED_0430SSED_0430SSED_0433SSED_0429SSED_0432SSED_0431
SPRO399741 SPRO_4012SPRO_4012SPRO_4009SPRO_0780SPRO_4010SPRO_4011
SPEA398579 SPEA_0418SPEA_0418SPEA_0421SPEA_0417SPEA_0420SPEA_0419
SONE211586 SO_0423SO_0423SO_0426SO_0422SO_0425SO_0424
SLOI323850 SHEW_3432SHEW_3432SHEW_3429SHEW_3433SHEW_3430SHEW_3431
SHIGELLA GLCCPDHRLPDAAMPEACEFACEE
SHAL458817 SHAL_0475SHAL_0475SHAL_0478SHAL_0474SHAL_0477SHAL_0476
SGLO343509 SG0466SG0466SG0469SG0468SG0467
SFLE373384 SFV_3035SFV_0104SFV_0107SFV_0102SFV_0106SFV_0105
SFLE198214 AAN44498.1AAN41774.1AAN41777.1AAN41772.1AAN41776.1AAN41775.1
SERY405948 SACE_3859SACE_3859SACE_5677SACE_1638SACE_1532
SENT454169 SEHA_C0165SEHA_C0165SEHA_C0168SEHA_C0161SEHA_C0167SEHA_C0166
SENT321314 SCH_0150SCH_0150SCH_0153SCH_0146SCH_0152SCH_0151
SENT295319 SPA0155SPA0155SPA0158SPA0151SPA0157SPA0156
SENT220341 STY0174STY0174STY0177STY0169STY0176STY0175
SENT209261 T0157T0157T0160T0153T0159T0158
SDYS300267 SDY_0143SDY_0143SDY_0146SDY_0141SDY_0145SDY_0144
SDEN318161 SDEN_3384SDEN_3384SDEN_3381SDEN_3385SDEN_3382SDEN_3383
SDEG203122 SDE_0954SDE_1270SDE_2104SDE_2572SDE_2573
SBOY300268 SBO_0102SBO_0102SBO_0105SBO_0100SBO_0104SBO_0103
SBAL402882 SHEW185_3935SHEW185_3935SHEW185_3932SHEW185_3936SHEW185_3933SHEW185_3934
SBAL399599 SBAL195_4055SBAL195_4055SBAL195_4052SBAL195_4056SBAL195_4053SBAL195_4054
RSPH272943 RSP_1034RSP_1034RSP_0962RSP_0964RSP_3974
RSOL267608 RSC1078RSC1078RSC1603RSC1601RSC1600
RPOM246200 SPO_3231SPO_3231SPO_0340SPO_0343SPO_A0319
RMET266264 RMET_5900RMET_5900RMET_1199RMET_1197RMET_4263
RFER338969 RFER_0202RFER_0202RFER_2214RFER_2213RFER_2212
REUT381666 H16_B2456H16_B0094H16_A1377H16_A2713H16_A1375H16_A1753
REUT264198 REUT_B3714REUT_B5449REUT_A1306REUT_A1304REUT_A1303
PSTU379731 PST_0430PST_3335PST_1877PST_3853PST_3852
PSP296591 BPRO_3977BPRO_4884BPRO_2669BPRO_2671BPRO_3831
PPUT76869 PPUTGB1_2160PPUTGB1_4735PPUTGB1_3758PPUTGB1_0824PPUTGB1_0366PPUTGB1_0367
PPUT351746 PPUT_2019PPUT_4600PPUT_1667PPUT_0813PPUT_0363PPUT_0364
PPUT160488 PP_3744PP_4734PP_4187PP_0790PP_0338PP_0339
PPRO298386 PBPRA3197PBPRA3197PBPRA3194PBPRA3195PBPRA3196
PMEN399739 PMEN_0204PMEN_3633PMEN_2501PMEN_0575PMEN_0576
PLUM243265 PLU3624PLU3624PLU3621PLU3636PLU3622PLU3623
PING357804 PING_2928PING_2928PING_2925PING_2926PING_2927
PHAL326442 PSHAA0390PSHAA0390PSHAA0393PSHAA0389PSHAA0392PSHAA0391
PFLU220664 PFL_2270PFL_0818PFL_0268PFL_0854PFL_0508PFL_3977
PFLU216595 PFLU5277PFLU5277PFLU1822PFLU0459PFLU3920
PFLU205922 PFL_0754PFL_0754PFL_1616PFL_0462PFL_0463
PENT384676 PSEEN0769PSEEN0769PSEEN3638PSEEN0928PSEEN5146PSEEN5145
PATL342610 PATL_3349PATL_3349PATL_3352PATL_3348PATL_3351PATL_1115
PAER208964 PA5356PA4769PA1587PA4521PA5016PA5015
PAER208963 PA14_70710PA14_63070PA14_43970PA14_66310PA14_66290
NMEN374833 NMCC_1623NMCC_1623NMCC_1256NMCC_1255NMCC_1254
NMEN272831 NMC1629NMC1629NMC1280NMC1279NMC1278
NMEN122587 NMA1965NMA1965NMA1556NMA1555NMA1554
NMEN122586 NMB_1711NMB_1711NMB_1344NMB_1342NMB_1341
NGON242231 NGO1360NGO1360NGO0562NGO0564NGO0565
MSP400668 MMWYL1_0071MMWYL1_0071MMWYL1_0058MMWYL1_2306MMWYL1_2307
MLOT266835 MLL6911MLL6911MLL4296MLL4471MLR9539
MAQU351348 MAQU_3306MAQU_0362MAQU_1156MAQU_3327MAQU_3328
KPNE272620 GKPORF_B4399GKPORF_B4399GKPORF_B4402GKPORF_B4394GKPORF_B4401GKPORF_B4400
JSP290400 JANN_1666JANN_1666JANN_0837JANN_0832JANN_3557
ILOI283942 IL0457IL0457IL0460IL0456IL0459IL0458
HCHE349521 HCH_01271HCH_01271HCH_00873HCH_01273HCH_01272
ESP42895 ENT638_0659ENT638_0659ENT638_0662ENT638_0655ENT638_0661ENT638_0660
EFER585054 EFER_0133EFER_0133EFER_0137EFER_0131EFER_0136EFER_0135
ECOO157 PDHRPDHRLPDAAMPEACEFACEE
ECOL83334 ECS0117ECS0117ECS0120ECS0115ECS0119ECS0118
ECOL585397 ECED1_3623ECED1_0117ECED1_0120ECED1_0109ECED1_0119ECED1_0118
ECOL585057 ECIAI39_3468ECIAI39_0113ECIAI39_0116ECIAI39_0111ECIAI39_0115ECIAI39_0114
ECOL585056 ECUMN_3456ECUMN_0110ECUMN_0113ECUMN_0108ECUMN_0112ECUMN_0111
ECOL585055 EC55989_0106EC55989_0106EC55989_0109EC55989_0104EC55989_0108EC55989_0107
ECOL585035 ECS88_3355ECS88_0121ECS88_0125ECS88_0113ECS88_0124ECS88_0123
ECOL585034 ECIAI1_3122ECIAI1_0110ECIAI1_0114ECIAI1_0108ECIAI1_0113ECIAI1_0112
ECOL481805 ECOLC_0720ECOLC_3546ECOLC_3543ECOLC_3548ECOLC_3544ECOLC_3545
ECOL469008 ECBD_0758ECBD_3506ECBD_3503ECBD_3508ECBD_3504ECBD_3505
ECOL439855 ECSMS35_3258ECSMS35_0123ECSMS35_0126ECSMS35_0114ECSMS35_0125ECSMS35_0124
ECOL413997 ECB_02849ECB_00112ECB_00115ECB_00110ECB_00114ECB_00113
ECOL409438 ECSE_3258ECSE_0113ECSE_0116ECSE_0111ECSE_0115ECSE_0114
ECOL405955 APECO1_3447APECO1_1872APECO1_1869APECO1_1878APECO1_1870APECO1_1871
ECOL364106 UTI89_C3395UTI89_C0125UTI89_C0129UTI89_C0119UTI89_C0128UTI89_C0127
ECOL362663 ECP_3058ECP_0119ECP_0123ECP_0111ECP_0122ECP_0121
ECOL331111 ECE24377A_3440ECE24377A_0115ECE24377A_0118ECE24377A_0113ECE24377A_0117ECE24377A_0116
ECOL316407 ECK2975:JW2947:B2980ECK0112:JW0109:B0113ECK0115:JW0112:B0116ECK0110:JW0107:B0111ECK0114:JW0111:B0115ECK0113:JW0110:B0114
ECOL199310 C3710C0140C0145C0130C0142
ECAR218491 ECA3790ECA3790ECA3787ECA3794ECA3788ECA3789
DSHI398580 DSHI_3026DSHI_3026DSHI_1966DSHI_1967DSHI_1968
DARO159087 DARO_1767DARO_1767DARO_0440DARO_0441DARO_0442
CVIO243365 CV_3037CV_3037CV_0528CV_0527CV_0526
CSP78 CAUL_1426CAUL_1834CAUL_0235CAUL_1872CAUL_3079
CSP501479 CSE45_4250CSE45_4250CSE45_4093CSE45_4089CSE45_0498
CSAL290398 CSAL_0403CSAL_0403CSAL_1219CSAL_0856CSAL_0855
CPSY167879 CPS_4809CPS_4809CPS_4805CPS_4810CPS_4806CPS_4808
BVIE269482 BCEP1808_2855BCEP1808_2855BCEP1808_2215BCEP1808_2216BCEP1808_2217
BTHA271848 BTH_II2081BTH_II2081BTH_I1866BTH_I1865BTH_I1864
BSP36773 BCEP18194_B0034BCEP18194_A6080BCEP18194_A5441BCEP18194_A5442BCEP18194_B1007
BPSE320373 BURPS668_A0554BURPS668_A0554BURPS668_2610BURPS668_2611BURPS668_A2462
BPSE320372 BURPS1710B_B2204BURPS1710B_B2204BURPS1710B_A2975BURPS1710B_A2976BURPS1710B_B0926
BPSE272560 BPSS0320BPSS0320BPSL2299BPSL2300BPSS1711
BPET94624 BPET4865BPET4865BPET3017BPET3018BPET3019
BPER257313 BP3681BP3681BP0995BP0994BP1121
BPAR257311 BPP0097BPP0097BPP1464BPP1463BPP3220
BMAL320389 BMA10247_A0866BMA10247_A0866BMA10247_1500BMA10247_1501BMA10247_A0512
BMAL243160 BMA_A1432BMA_A1432BMA_1719BMA_1720BMA_1721
BLIC279010 BL03455BL03455BL01619BL01618BL01777
BCEN331272 BCEN2424_6710BCEN2424_6710BCEN2424_2135BCEN2424_3246BCEN2424_2137
BCEN331271 BCEN_6475BCEN_6475BCEN_5942BCEN_4917BCEN_5940
BBRO257310 BB0096BB0096BB4695BB2537BB3672
BAMB398577 BAMMC406_5490BAMMC406_2669BAMMC406_2045BAMMC406_2046BAMMC406_2047
BAMB339670 BAMB_4937BAMB_2802BAMB_2172BAMB_6502BAMB_2174
ASP62977 ACIAD0107ACIAD0107ACIAD2874ACIAD3506ACIAD3507
ASP62928 AZO1170AZO1170AZO1371AZO1372AZO1373
ASAL382245 ASA_0418ASA_0418ASA_0421ASA_0420ASA_0419
AHYD196024 AHA_3864AHA_3864AHA_3861AHA_3862AHA_3863
AEHR187272 MLG_2283MLG_2283MLG_0271MLG_0270MLG_0269
ACAU438753 AZC_0823AZC_0823AZC_4009AZC_4011AZC_0327


Organism features enriched in list (features available for 123 out of the 131 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00285171092
Arrangment:Pairs 0.000174238112
Disease:Bubonic_plague 0.000080066
Disease:Dysentery 0.000080066
Disease:Gastroenteritis 0.00001921013
Disease:Melioidosis 0.009210533
Disease:Meningitis_and_septicemia 0.001905644
Endospores:No 0.000067027211
Endospores:Yes 0.0002209253
GC_Content_Range4:0-40 3.147e-252213
GC_Content_Range4:40-60 1.622e-1078224
GC_Content_Range4:60-100 0.001576543145
GC_Content_Range7:30-40 6.062e-182166
GC_Content_Range7:50-60 2.215e-845107
GC_Content_Range7:60-70 0.000525842134
Genome_Size_Range5:2-4 1.663e-1310197
Genome_Size_Range5:4-6 2.383e-2790184
Genome_Size_Range5:6-10 6.370e-62347
Genome_Size_Range9:2-3 6.214e-86120
Genome_Size_Range9:3-4 0.0000358477
Genome_Size_Range9:4-5 1.065e-114796
Genome_Size_Range9:5-6 1.330e-104388
Genome_Size_Range9:6-8 1.372e-62138
Gram_Stain:Gram_Neg 3.825e-21113333
Gram_Stain:Gram_Pos 1.046e-152150
Habitat:Multiple 0.000650652178
Motility:No 1.071e-98151
Motility:Yes 1.501e-1189267
Optimal_temp.:35-37 0.0071701713
Oxygen_Req:Anaerobic 7.271e-111102
Oxygen_Req:Facultative 1.767e-1276201
Pathogenic_in:Human 0.001131259213
Pathogenic_in:No 0.000697433226
Shape:Coccus 0.0007582782
Shape:Rod 2.124e-14108347
Temp._range:Mesophilic 0.0053315109473
Temp._range:Psychrophilic 0.003398769



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 261
Effective number of orgs (counting one per cluster within 468 clusters): 217

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-11
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7546   EG11088   EG10543   EG10042   EG10025   EG10024   
ZMOB264203
WSUC273121 WS0561
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RRC124
TWHI218496 TW0489
TWHI203267 TW255
TVOL273116 TVN0100
TTEN273068 TTE1674
TSP28240
TROS309801 TRD_A0153
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800 TFU_3051
TERY203124
TELO197221
TDEN326298
TDEN292415 TBD_0159
TDEN243275
TACI273075 TA1436
SWOL335541
STRO369723 STROP_3373
STOK273063
STHE322159 STER_1034
STHE299768 STR1049
STHE264199 STU1049
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057 SSO0297
SRUB309807 SRU_0811
SPYO370554
SPYO370553
SPYO370551
SPYO319701 M28_SPY1418
SPYO293653 M5005_SPY1375
SPYO286636 M6_SPY1423
SPYO198466 SPYM3_1462
SPYO193567 SPS0404
SPYO186103
SPYO160490 SPY1676
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SGOR29390
SELO269084
SARE391037 SARE_3613
SAGA208435 SAG_0699
SAGA205921 SAK_0825
SACI56780
SACI330779
RTYP257363 RT0447
RSP357808 ROSERS_2952
RRIC452659 RRIOWA_0912
RRIC392021 A1G_04340
RPRO272947 RP460
RMAS416276 RMA_0786
RFEL315456 RF_0807
RCON272944 RC0693
RCAS383372 RCAS_1946
RCAN293613 A1E_02490
RBEL391896 A1I_03305
RBEL336407 RBE_0578
RALB246199
RAKA293614 A1C_04135
PTOR263820
PRUM264731 GFRORF0393
PPEN278197 PEPE_1770
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198 PIN_A1453
PHOR70601
PGIN242619 PG_1748
PFUR186497
PDIS435591 BDI_1668
PCAR338963
PAST100379 PAM602
PARS340102 PARS_1187
PAER178306 PAE2648
PABY272844
OTSU357244
NSP387092
NSP103690
NSEN222891
MXAN246197 MXAN_4217
MTUB419947 MRA_2261
MTUB336982 TBFG_12270
MTHE349307
MTHE187420
MTBRV RV2241
MTBCDC MT2301
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0267
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1651
MLAB410358
MKAN190192
MJAN243232 MJ_0681
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MEXT419610 MEXT_1648
MCAP340047 MCAP_0227
MBUR259564
MBOV410289 BCG_2258
MBOV233413 MB2265
MBAR269797
MAVI243243 MAV_2196
MART243272
MAER449447
MAEO419665 MAEO_1503
MACE188937
MABS561007 MAB_1884C
LREU557436 LREU_0634
LPLA220668 LP_2152
LMES203120 LEUM_0740
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBOR355277 LBJ_2124
LBOR355276 LBL_2121
LBIF456481 LEPBI_I1057
LBIF355278 LBF_1023
LACI272621
IHOS453591
HWAL362976
HPYL85963
HPYL357544 HPAG1_0359
HPY HP1088
HMUK485914 HMUK_0985
HHEP235279 HH_0026
HBUT415426
HAUR316274 HAUR_4513
HACI382638 HAC_0794
GVIO251221
GOXY290633
GBET391165 GBCGDNIH1_2066
FSUC59374
FSP1855 FRANEAN1_1860
FSP106370 FRANCCI3_3057
FNUC190304 FN0294
FNOD381764
FMAG334413
FALN326424 FRAAL5051
ERUM302409
ERUM254945
ELIT314225 ELI_05165
ECHA205920
ECAN269484
DSP255470
DSP216389
DPSY177439
DOLE96561
DETH243164
DDES207559 DDE_1244
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3829
CPER289380
CPER195103 CPF_0306
CPER195102 CPE0309
CMUR243161 TC_0131
CMIC443906 CMM_1621
CMIC31964 CMS1604
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099 CJE_1817
CJEJ192222 CJ1645
CHOM360107
CFET360106 CFF8240_0069
CFEL264202
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CABO218497
BTUR314724
BTRI382640 BT_2674
BTHE226186 BT_0347
BQUI283165 BQ13400
BLON206672 BL0716
BHER314723
BHEN283166 BH16520
BGAR290434
BFRA295405
BFRA272559
BBUR224326
BBAC360095 BARBAKC583_0027
BAFZ390236
AYEL322098 AYWB_138
AVAR240292
AURANTIMONAS
APHA212042
APER272557
AORE350688 CLOS_2267
AMAR329726
AMAR234826
ALAI441768 ACL_1310
AFUL224325
AFER243159
ACEL351607
AAEO224324


Organism features enriched in list (features available for 247 out of the 261 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.000403899
Arrangment:Clusters 0.0009396117
Arrangment:Pairs 5.409e-725112
Disease:Pharyngitis 0.000971588
Disease:Wide_range_of_infections 0.00108001011
Disease:bronchitis_and_pneumonitis 0.000971588
Endospores:No 9.063e-13130211
Endospores:Yes 0.00010671053
GC_Content_Range4:0-40 3.009e-11128213
GC_Content_Range4:60-100 2.984e-932145
GC_Content_Range7:0-30 0.00262402947
GC_Content_Range7:30-40 5.823e-899166
GC_Content_Range7:50-60 0.000024927107
GC_Content_Range7:60-70 2.361e-928134
Genome_Size_Range5:0-2 5.871e-39133155
Genome_Size_Range5:4-6 1.721e-2325184
Genome_Size_Range5:6-10 0.0000914847
Genome_Size_Range9:0-1 0.00011722127
Genome_Size_Range9:1-2 4.693e-33112128
Genome_Size_Range9:4-5 3.485e-111396
Genome_Size_Range9:5-6 3.471e-101288
Genome_Size_Range9:6-8 0.0002462638
Gram_Stain:Gram_Neg 3.687e-7112333
Habitat:Host-associated 0.0003292106206
Habitat:Multiple 1.298e-650178
Habitat:Specialized 0.00005363653
Habitat:Terrestrial 0.0002630431
Motility:No 5.153e-687151
Motility:Yes 6.644e-882267
Optimal_temp.:30 0.0025832115
Optimal_temp.:30-35 0.002331677
Optimal_temp.:37 0.000844259106
Oxygen_Req:Aerobic 0.002481364185
Oxygen_Req:Anaerobic 6.958e-1071102
Oxygen_Req:Facultative 5.961e-758201
Shape:Irregular_coccus 3.289e-71717
Shape:Rod 1.377e-1699347
Shape:Sphere 0.00001981719
Shape:Spiral 1.264e-72934
Temp._range:Hyperthermophilic 4.892e-82223
Temp._range:Mesophilic 0.0000171181473
Temp._range:Thermophilic 0.00238812335



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120920.6669
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181200.6125
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149950.5879
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761040.5861
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951090.5776
GLYCOCAT-PWY (glycogen degradation I)2461230.5743
GALACTITOLCAT-PWY (galactitol degradation)73620.5713
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491200.5439
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491200.5439
GLUCONSUPER-PWY (D-gluconate degradation)2291140.5380
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121060.5106
PWY-4041 (γ-glutamyl cycle)2791230.5096
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251090.5059
ECASYN-PWY (enterobacterial common antigen biosynthesis)191990.5027
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001260.4960
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911240.4959
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961250.4950
LIPASYN-PWY (phospholipases)2121040.4940
GLUCARDEG-PWY (D-glucarate degradation I)152850.4864
PWY-5148 (acyl-CoA hydrolysis)2271070.4851
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81580.4798
PWY0-981 (taurine degradation IV)106680.4792
PWY-5918 (heme biosynthesis I)2721170.4750
PWY-46 (putrescine biosynthesis III)138790.4741
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901210.4740
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391300.4644
PWY-6196 (serine racemization)102650.4636
PWY-1269 (CMP-KDO biosynthesis I)3251270.4626
TYRFUMCAT-PWY (tyrosine degradation I)184920.4603
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135760.4552
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138770.4551
PWY-5913 (TCA cycle variation IV)3011210.4549
GLUTAMINDEG-PWY (glutamine degradation I)191930.4514
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861170.4495
P344-PWY (acrylonitrile degradation)210980.4487
PWY-5386 (methylglyoxal degradation I)3051200.4402
THREONINE-DEG2-PWY (threonine degradation II)214980.4396
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135740.4361
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481280.4349
GALACTARDEG-PWY (D-galactarate degradation I)151790.4343
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91580.4335
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291240.4326
PWY-3162 (tryptophan degradation V (side chain pathway))94590.4318
IDNCAT-PWY (L-idonate degradation)2461050.4293
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183880.4283
P601-PWY (D-camphor degradation)95590.4276
PWY0-1182 (trehalose degradation II (trehalase))70490.4276
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001170.4251
PHESYN (phenylalanine biosynthesis I)110640.4222
DAPLYSINESYN-PWY (lysine biosynthesis I)3421250.4202
GLUTDEG-PWY (glutamate degradation II)194900.4186
GALACTCAT-PWY (D-galactonate degradation)104610.4133
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191880.4087



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11088   EG10543   EG10042   EG10025   EG10024   
G75460.9998640.9985870.9989140.9988590.999069
EG110880.9988990.9990910.9990590.999174
EG105430.9988170.9999250.999624
EG100420.9989140.998898
EG100250.999859
EG10024



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PAIRWISE BLAST SCORES:

  G7546   EG11088   EG10543   EG10042   EG10025   EG10024   
G75460.0f02.0e-22----
EG110882.2e-210.0f0----
EG10543--0.0f0---
EG10042---0.0f0--
EG10025----0.0f0-
EG10024-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PYRUVDEHYD-PWY (acetyl-CoA biosynthesis (from pyruvate)) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9989 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
   *in cand* 0.9993 0.9986 EG10543 (lpd) E3-MONOMER (E3 monomer)
   *in cand* 0.9994 0.9989 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9988 EG10042 (ampE) EG10042-MONOMER (predicted inner membrane protein)
   *in cand* 0.9993 0.9989 EG11088 (pdhR) EG11088-MONOMER (PdhR transcriptional dual regulator)
   *in cand* 0.9992 0.9986 G7546 (glcC) G7546-MONOMER (GlcC transcriptional dual regulator)

- PYRUVATEDEH-CPLX (pyruvate dehydrogenase multienzyme complex) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9986 EG10543 (lpd) E3-MONOMER (E3 monomer)
   *in cand* 0.9994 0.9989 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
   *in cand* 0.9994 0.9989 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9988 EG10042 (ampE) EG10042-MONOMER (predicted inner membrane protein)
   *in cand* 0.9993 0.9989 EG11088 (pdhR) EG11088-MONOMER (PdhR transcriptional dual regulator)
   *in cand* 0.9992 0.9986 G7546 (glcC) G7546-MONOMER (GlcC transcriptional dual regulator)

- ANARESP1-PWY (respiration (anaerobic)) (degree of match pw to cand: 0.111, degree of match cand to pw: 0.500, average score: 0.592)
  Genes in pathway or complex:
             0.4101 0.0328 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.5636 0.0909 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
   *in cand* 0.9993 0.9986 EG10543 (lpd) E3-MONOMER (E3 monomer)
   *in cand* 0.9994 0.9989 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
   *in cand* 0.9994 0.9989 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
             0.3266 0.0665 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.9983 0.9979 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.2942 0.0448 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.8691 0.7431 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
             0.7103 0.3471 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.2720 0.0012 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.4532 0.2611 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.4579 0.2642 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.2577 0.1619 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.2414 0.1553 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.7937 0.6641 EG10258 (eno) ENOLASE-MONOMER (Eno)
             0.2340 0.0780 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
             0.1767 0.0561 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.1243 0.0515 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
             0.2152 0.0646 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.3287 0.1477 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
             0.2383 0.0728 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.9093 0.8600 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.9178 0.8778 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.6547 0.2052 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.6978 0.2507 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9988 EG10042 (ampE) EG10042-MONOMER (predicted inner membrane protein)
   *in cand* 0.9993 0.9989 EG11088 (pdhR) EG11088-MONOMER (PdhR transcriptional dual regulator)
   *in cand* 0.9992 0.9986 G7546 (glcC) G7546-MONOMER (GlcC transcriptional dual regulator)

- GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass) (degree of match pw to cand: 0.073, degree of match cand to pw: 0.500, average score: 0.600)
  Genes in pathway or complex:
             0.7103 0.3471 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.2720 0.0012 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.4532 0.2611 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.4579 0.2642 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.3770 0.0031 EG10981 (sucC) SUCCCOASYN-BETA (succinyl-CoA synthetase, β subunit)
             0.3779 0.0034 EG10982 (sucD) SUCCCOASYN-ALPHA (succinyl-CoA synthetase, α subunit)
             0.6588 0.1696 EG10980 (sucB) E2O-MONOMER (SucB)
             0.5685 0.1702 EG10979 (sucA) E1O-MONOMER (subunit of E1(0) component of 2-oxoglutarate dehydrogenase)
             0.2942 0.0448 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.3266 0.0665 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.4525 0.0383 EG11325 (acnA) ACONITASE-MONOMER (aconitate hydratase 1)
             0.9983 0.9979 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.3112 0.0334 EG10934 (sdhD) SDH-MEMB2 (succinate dehydrogenase membrane protein)
             0.4441 0.0445 EG10933 (sdhC) SDH-MEMB1 (succinate dehydrogenase membrane protein)
             0.3942 0.0372 EG10932 (sdhB) SDH-FE-S (succinate dehydrogenase iron-sulfur protein)
             0.3909 0.0381 EG10931 (sdhA) SDH-FLAVO (succinate dehydrogenase flavoprotein)
             0.1450 0.0902 EG12069 (mqo) EG12069-MONOMER (malate:quinone oxidoreductase)
             0.7665 0.6923 EG10023 (aceB) MALATE-SYNTHASE (malate synthase A)
             0.6496 0.4605 EG10022 (aceA) ISOCIT-LYASE-MONOMER (isocitrate lyase monomer)
             0.4039 0.0426 EG11245 (yggF) EG11245-MONOMER (fructose-1,6-bisphosphatase)
             0.5576 0.3545 EG11239 (ybhA) EG11239-MONOMER (pyridoxal phosphatase / fructose 1,6-bisphosphatase)
             0.4680 0.0569 EG11517 (glpX) EG11517-MONOMER (fructose 1,6-bisphosphatase II)
             0.8835 0.7266 EG10283 (fbp) F16B-MONOMER (fructose-1,6-bisphosphatase monomer)
             0.4036 0.0535 EG10759 (ppsA) PEPSYNTH-MONOMER (phosphoenolpyruvate synthetase)
             0.8592 0.7056 EG10702 (pgi) PGLUCISOM (Pgi)
             0.7485 0.4659 EG10699 (pfkA) 6PFK-1-MONOMER (6-phosphofructokinase-1 monomer)
             0.5691 0.0777 EG10700 (pfkB) 6PFK-2-MONOMER (6-phosphofructokinase-2 monomer)
             0.1700 0.0518 G7129 (fbaB) FRUCBISALD-CLASSI-MONOMER (fructose bisphosphate aldolase monomer)
             0.3839 0.1128 EG10282 (fbaA) FRUCTBISALD-CLASSII-MONOMER (fructose bisphosphate aldolase monomer)
             0.7384 0.3228 EG11015 (tpiA) TPI-MONOMER (triose phosphate isomerase monomer)
             0.6523 0.1105 EG10367 (gapA) GAPDH-A-MONOMER (glyceraldehyde 3-phosphate dehydrogenase-A monomer)
             0.7483 0.3791 EG10703 (pgk) PGK (phosphoglycerate kinase)
             0.8992 0.8301 EG12296 (gpmM) PGMI-MONOMER (phosphoglycerate mutase, cofactor independent)
             0.8889 0.7349 EG12164 (ytjC) PGAM2-MONOMER (phosphoglycerate mutase 2)
             0.4671 0.0529 EG11699 (gpmA) GPMA-MONOMER (phosphoglyceromutase 1 monomer)
             0.7937 0.6641 EG10258 (eno) ENOLASE-MONOMER (Eno)
             0.5636 0.0909 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.4101 0.0328 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
   *in cand* 0.9993 0.9986 EG10543 (lpd) E3-MONOMER (E3 monomer)
   *in cand* 0.9994 0.9989 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
   *in cand* 0.9994 0.9989 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9988 EG10042 (ampE) EG10042-MONOMER (predicted inner membrane protein)
   *in cand* 0.9993 0.9989 EG11088 (pdhR) EG11088-MONOMER (PdhR transcriptional dual regulator)
   *in cand* 0.9992 0.9986 G7546 (glcC) G7546-MONOMER (GlcC transcriptional dual regulator)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10024 EG10025 EG10543 (centered at EG10025)
G7546 (centered at G7546)
EG11088 (centered at EG11088)
EG10042 (centered at EG10042)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7546   EG11088   EG10543   EG10042   EG10025   EG10024   
232/623217/623346/62372/623344/623313/623
AAUR290340:1:Tyes--0---
AAUR290340:2:Tyes----0656
AAVE397945:0:Tyes--2-10
ABAC204669:0:Tyes--0-12
ABAU360910:0:Tyes--2-10
ABOR393595:0:Tyes--891-10
ABUT367737:0:Tyes--2-10
ACAU438753:0:Tyes5035033726-37280
ACRY349163:8:Tyes--0--452
ADEH290397:0:Tyes--0-310309
AEHR187272:0:Tyes200120012-10
AHYD196024:0:Tyes330-12
ALAI441768:0:Tyes----0-
AMET293826:0:Tyes24392439--0-
ANAE240017:0:Tyes----047
AORE350688:0:Tyes-----0
APLE416269:0:Tyes--0-12
APLE434271:0:Tno--0-12
ASAL382245:5:Tyes003-21
ASP1667:3:Tyes-0--7802593
ASP232721:2:Tyes--0-2122
ASP62928:0:Tyes00208-209210
ASP62977:0:Tyes002578-31573158
ASP76114:2:Tyes--2-10
AYEL322098:4:Tyes----0-
BABO262698:0:Tno00----
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CSP501479:6:Fyes1611614-0-
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MCAP243233:0:Tyes--2-10
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MEXT419610:0:Tyes--0---
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MSP409:2:Tyes--4868-04870
MSUC221988:0:Tyes0-818-819820
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NFAR247156:2:Tyes859---770
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NMUL323848:3:Tyes--157-10
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NSP35761:0:Tyes-----0
NSP35761:1:Tyes20680--167-
NWIN323098:0:Tyes--0--2335
OANT439375:4:Tyes00----
OANT439375:5:Tyes--275--0
OCAR504832:0:Tyes--0--2505
OIHE221109:0:Tyes001081-1080-
PACN267747:0:Tyes----0296
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PARC259536:0:Tyes--0-12261227
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PATL342610:0:Tyes226222622265226122640
PCRY335284:1:Tyes--0-935934
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PSYR205918:0:Tyes--149929701106
PSYR223283:2:Tyes--1242040044003
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RCAN293613:0:Fyes--0---
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REUT381666:2:Tyes--212810359
RFEL315456:2:Tyes--0---
RFER338969:1:Tyes002012-20112010
RLEG216596:3:Tyes----0-
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RLEG216596:6:Tyes0-2090---
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RSP357808:0:Tyes-----0
RSPH272943:2:Tyes-----0
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SBAL399599:3:Tyes330412
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SCO:2:Fyes262262--0191
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SMED366394:3:Tyes002517---
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VCHO:0:Tyes330-12
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VEIS391735:1:Tyes1638-0-12
VFIS312309:2:Tyes440-13
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XCAM316273:0:Tno--2-03185
XCAM487884:0:Tno--3238-32400
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XORY342109:0:Tyes--2-03400
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YENT393305:1:Tyes336054
YPES187410:5:Tno225043
YPES214092:3:Tno330512
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YPES360102:3:Tyes330512
YPES377628:2:Tno225043
YPES386656:2:Tno226043
YPSE273123:2:Tno225043
YPSE349747:2:Tno440723



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