CANDIDATE ID: 504

CANDIDATE ID: 504

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9968513e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.3333333e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11405 (cydD) (b0887)
   Products of gene:
     - CYDD-MONOMER (CydD)
     - ABC-6-CPLX (glutathione ABC transporter CydDC)
       Reactions:
        L-cysteine[cytosol] + ATP + H2O  ->  L-cysteine[periplasmic space] + ADP + phosphate
        glutathione[cytosol] + ATP + H2O  ->  glutathione[periplasmic space] + ADP + phosphate

- EG11380 (appC) (b0978)
   Products of gene:
     - APPC-MONOMER (cytochrome bd-II terminal oxidase subunit I)
     - APP-UBIOX-CPLX (cytochrome bd-II terminal oxidase)
       Reactions:
        2 a ubiquinol + oxygen + 4 H+  ->  2 a ubiquinone + 2 H2O + 4 H+[periplasmic space]
         In pathways
         PWY0-1334 (NADH to cytochrome bd oxidase electron transfer)
         PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)

- EG11379 (appB) (b0979)
   Products of gene:
     - APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
     - APP-UBIOX-CPLX (cytochrome bd-II terminal oxidase)
       Reactions:
        2 a ubiquinol + oxygen + 4 H+  ->  2 a ubiquinone + 2 H2O + 4 H+[periplasmic space]
         In pathways
         PWY0-1334 (NADH to cytochrome bd oxidase electron transfer)
         PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)

- EG10174 (cydB) (b0734)
   Products of gene:
     - CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
     - CYT-D-UBIOX-CPLX (cytochrome bd-I terminal oxidase)
       Reactions:
        2 a ubiquinol + oxygen + 4 H+  ->  2 a ubiquinone + 2 H2O + 4 H+[periplasmic space]
         In pathways
         PWY0-1334 (NADH to cytochrome bd oxidase electron transfer)
         PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)

- EG10173 (cydA) (b0733)
   Products of gene:
     - CYDA-MONOMER (cytochrome bd-I terminal oxidase subunit I)
     - CYT-D-UBIOX-CPLX (cytochrome bd-I terminal oxidase)
       Reactions:
        2 a ubiquinol + oxygen + 4 H+  ->  2 a ubiquinone + 2 H2O + 4 H+[periplasmic space]
         In pathways
         PWY0-1334 (NADH to cytochrome bd oxidase electron transfer)
         PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)

- EG10012 (cydC) (b0886)
   Products of gene:
     - CYDC-MONOMER (CydC)
     - ABC-6-CPLX (glutathione ABC transporter CydDC)
       Reactions:
        L-cysteine[cytosol] + ATP + H2O  ->  L-cysteine[periplasmic space] + ADP + phosphate
        glutathione[cytosol] + ATP + H2O  ->  glutathione[periplasmic space] + ADP + phosphate



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 220
Effective number of orgs (counting one per cluster within 468 clusters): 144

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TFUS269800 ncbi Thermobifida fusca YX6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STRO369723 ncbi Salinispora tropica CNB-4406
STHE292459 ncbi Symbiobacterium thermophilum IAM 148636
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SAVE227882 ncbi Streptomyces avermitilis MA-46806
SARE391037 ncbi Salinispora arenicola CNS-2056
SAGA211110 ncbi Streptococcus agalactiae NEM3165
SAGA208435 ncbi Streptococcus agalactiae 2603V/R5
SAGA205921 ncbi Streptococcus agalactiae A9095
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSP101510 ncbi Rhodococcus jostii RHA15
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1185
RBEL391896 ncbi Rickettsia bellii OSU 85-3895
RBEL336407 ncbi Rickettsia bellii RML369-C5
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSP56811 Psychrobacter sp.5
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PLUT319225 ncbi Chlorobium luteolum DSM 2736
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PACN267747 ncbi Propionibacterium acnes KPA1712026
OCAR504832 ncbi Oligotropha carboxidovorans OM55
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
NSP35761 Nocardioides sp.6
NFAR247156 ncbi Nocardia farcinica IFM 101526
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra5
MTUB336982 ncbi Mycobacterium tuberculosis F115
MTHE264732 ncbi Moorella thermoacetica ATCC 390736
MTBRV ncbi Mycobacterium tuberculosis H37Rv5
MTBCDC ncbi Mycobacterium tuberculosis CDC15515
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL15
MSP189918 ncbi Mycobacterium sp. KMS5
MSP164757 ncbi Mycobacterium sp. JLS5
MSP164756 ncbi Mycobacterium sp. MCS5
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MEXT419610 ncbi Methylobacterium extorquens PA15
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P25
MBOV233413 ncbi Mycobacterium bovis AF2122/975
MAVI243243 ncbi Mycobacterium avium 1045
MACE188937 ncbi Methanosarcina acetivorans C2A6
MABS561007 ncbi Mycobacterium abscessus ATCC 199775
LXYL281090 ncbi Leifsonia xyli xyli CTCB076
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53346
LREU557436 ncbi Lactobacillus reuteri DSM 200166
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LPLA220668 ncbi Lactobacillus plantarum WCFS16
LMON265669 ncbi Listeria monocytogenes 4b F23656
LMON169963 ncbi Listeria monocytogenes EGD-e6
LLAC272623 ncbi Lactococcus lactis lactis Il14036
LLAC272622 ncbi Lactococcus lactis cremoris SK116
LJOH257314 ncbi Lactobacillus johnsonii NCC 5336
LINN272626 ncbi Listeria innocua Clip112626
LGAS324831 ncbi Lactobacillus gasseri ATCC 333235
LCAS321967 ncbi Lactobacillus casei ATCC 3346
LBRE387344 ncbi Lactobacillus brevis ATCC 3676
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HNEP81032 Hyphomonas neptunium5
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237796
HARS204773 ncbi Herminiimonas arsenicoxydans6
GVIO251221 ncbi Gloeobacter violaceus PCC 74216
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GMET269799 ncbi Geobacter metallireducens GS-156
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-006
FTUL418136 ncbi Francisella tularensis tularensis WY96-34186
FTUL401614 ncbi Francisella novicida U1126
FTUL393115 ncbi Francisella tularensis tularensis FSC1986
FTUL393011 ncbi Francisella tularensis holarctica OSU186
FTUL351581 Francisella tularensis holarctica FSC2006
FRANT ncbi Francisella tularensis tularensis SCHU S46
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250176
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
EFAE226185 ncbi Enterococcus faecalis V5836
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DRED349161 ncbi Desulfotomaculum reducens MI-16
DOLE96561 ncbi Desulfococcus oleovorans Hxd35
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DHAF138119 ncbi Desulfitobacterium hafniense Y516
DGEO319795 ncbi Deinococcus geothermalis DSM 113005
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
CTEP194439 ncbi Chlorobium tepidum TLS6
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE456
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3826
CMIC31964 ncbi Clavibacter michiganensis sepedonicus6
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131295
CAULO ncbi Caulobacter crescentus CB155
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BSUI470137 ncbi Brucella suis ATCC 234456
BSUI204722 ncbi Brucella suis 13306
BSUB ncbi Bacillus subtilis subtilis 1686
BSP36773 Burkholderia sp.6
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BOVI236 Brucella ovis6
BMEL359391 ncbi Brucella melitensis biovar Abortus 23086
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M6
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145796
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BCAN483179 ncbi Brucella canis ATCC 233656
BBRO257310 ncbi Bordetella bronchiseptica RB506
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB339670 ncbi Burkholderia ambifaria AMMD6
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9416
ASP62928 ncbi Azoarcus sp. BH725
ASP1667 Arthrobacter sp.5
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
ANAE240017 Actinomyces oris MG16
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-56
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABAU360910 ncbi Bordetella avium 197N6
AAUR290340 ncbi Arthrobacter aurescens TC15


Names of the homologs of the genes in the group in each of these orgs
  EG11405   EG11380   EG11379   EG10174   EG10173   EG10012   
YPSE349747 YPSIP31758_2600YPSIP31758_2876YPSIP31758_2875YPSIP31758_2875YPSIP31758_2876YPSIP31758_2601
YPSE273123 YPTB1398YPTB1151YPTB1152YPTB1152YPTB1151YPTB1397
YPES386656 YPDSF_2322YPDSF_2579YPDSF_2578YPDSF_2578YPDSF_2579YPDSF_2323
YPES377628 YPN_2607YPN_2881YPN_2880YPN_2880YPN_2881YPN_2608
YPES360102 YPA_0663YPA_0595YPA_0596YPA_0596YPA_0595YPA_0662
YPES349746 YPANGOLA_A1607YPANGOLA_A1388YPANGOLA_A1389YPANGOLA_A1389YPANGOLA_A1388YPANGOLA_A1606
YPES214092 YPO1373YPO1117YPO1118YPO1118YPO1117YPO1372
YPES187410 Y2803Y3063Y3062Y3062Y3063Y2805
YENT393305 YE1522YE2939YE2938YE2938YE2939YE1521
XCAM487884 XCC-B100_1949XCC-B100_1948XCC-B100_1947XCC-B100_1947XCC-B100_1948XCC-B100_1950
XCAM316273 XCAORF_2500XCAORF_2501XCAORF_2502XCAORF_2502XCAORF_2501XCAORF_2499
XCAM314565 XC_1886XC_1885XC_1884XC_1884XC_1885XC_1887
XCAM190485 XCC2231XCC2232XCC2233XCC2233XCC2232XCC2230
XAXO190486 XAC2335XAC2336XAC2337XAC2337XAC2336XAC2334
XAUT78245 XAUT_2458XAUT_1268XAUT_1267XAUT_1268XAUT_2459
VVUL216895 VV1_2811VV1_2162VV1_2163VV1_2163VV1_2162VV1_2812
VVUL196600 VV1454VV2283VV2282VV2282VV2283VV1453
VPAR223926 VP1250VP1053VP1054VP1054VP1053VP1249
VFIS312309 VF0901VF0953VF0954VF0954VF0953VF0900
VCHO345073 VC0395_A0802VC0395_A1435VC0395_A1434VC0395_A1434VC0395_A1435VC0395_A0801
VCHO VC1181VC1844VC1843VC1843VC1844VC1180
TTUR377629 TERTU_4033TERTU_4036TERTU_4035TERTU_4035TERTU_4036TERTU_0436
TFUS269800 TFU_0636TFU_0638TFU_0637TFU_0637TFU_0638TFU_0635
STYP99287 STM0957STM1792STM1793STM0741STM1792STM0956
STRO369723 STROP_0823STROP_2339STROP_2338STROP_2338STROP_2339STROP_0822
STHE292459 STH2723STH642STH643STH643STH642STH3278
SSP94122 SHEWANA3_0812SHEWANA3_1241SHEWANA3_1242SHEWANA3_1242SHEWANA3_1241SHEWANA3_0813
SSON300269 SSO_0888SSO_0984SSO_0985SSO_0686SSO_0984SSO_0887
SSED425104 SSED_3849SSED_3118SSED_3117SSED_3117SSED_3118SSED_3848
SPRO399741 SPRO_1678SPRO_1271SPRO_1272SPRO_1272SPRO_1271SPRO_1677
SPEA398579 SPEA_3494SPEA_1318SPEA_1319SPEA_1319SPEA_1318SPEA_3493
SONE211586 SO_3780SO_3286SO_3285SO_3285SO_3286SO_3779
SLOI323850 SHEW_0613SHEW_1302SHEW_1303SHEW_1303SHEW_1302SHEW_0614
SHIGELLA CYDDAPPCAPPBCYDBAPPCCYDC
SHAL458817 SHAL_3589SHAL_1381SHAL_1382SHAL_1382SHAL_1381SHAL_3588
SGLO343509 SG1105SG0880SG0881SG0881SG0880SG1104
SFUM335543 SFUM_1390SFUM_0339SFUM_0338SFUM_0338SFUM_0339
SFLE373384 SFV_0878SFV_0987SFV_0988SFV_0602SFV_0987SFV_0877
SFLE198214 AAN42479.1AAN42608.1AAN42609.1AAN42207.1AAN42608.1AAN42478.1
SERY405948 SACE_0144SACE_0143SACE_0143SACE_0142SACE_0056
SENT454169 SEHA_C1056SEHA_C1990SEHA_C1991SEHA_C0868SEHA_C1990SEHA_C1055
SENT321314 SCH_0911SCH_0744SCH_0745SCH_0745SCH_0744SCH_0910
SENT295319 SPA1841SPA2003SPA1080SPA2002SPA2003SPA1842
SENT220341 STY0955STY0786STY1921STY0787STY0786STY0954
SENT209261 T1977T2136T1083T2135T2136T1978
SDYS300267 SDY_2374SDY_0953SDY_0954SDY_0681SDY_0953SDY_2375
SDEN318161 SDEN_0860SDEN_1274SDEN_1275SDEN_1275SDEN_1274SDEN_0859
SCO SCO3947SCO3945SCO3946SCO3946SCO3947
SBOY300268 SBO_0820SBO_2253SBO_2252SBO_0593SBO_2253SBO_0819
SBAL402882 SHEW185_0873SHEW185_2993SHEW185_2992SHEW185_2992SHEW185_2993SHEW185_0874
SBAL399599 SBAL195_0908SBAL195_3137SBAL195_3136SBAL195_3136SBAL195_3137SBAL195_0909
SAVE227882 SAV4258SAV4260SAV4259SAV4259SAV4260SAV4258
SARE391037 SARE_0767SARE_2482SARE_2481SARE_2481SARE_2482SARE_0766
SAGA211110 GBS1785GBS1787GBS1786GBS1786GBS1784
SAGA208435 SAG_1740SAG_1742SAG_1741SAG_1741SAG_1739
SAGA205921 SAK_1748SAK_1750SAK_1749SAK_1749SAK_1747
SACI56780 SYN_01976SYN_01975SYN_01975SYN_01976SYN_01564
RSP101510 RHA1_RO04849RHA1_RO04848RHA1_RO04848RHA1_RO04847RHA1_RO04958
RPAL316058 RPB_0931RPB_0929RPB_0930RPB_0930RPB_0929RPB_0932
RLEG216596 PRL90276PRL90278PRL90279PRL90279PRL90278PRL90277
RFER338969 RFER_2362RFER_2363RFER_2363RFER_2362RFER_3493
RBEL391896 A1I_02980A1I_06490A1I_06490A1I_02980A1I_02845
RBEL336407 RBE_0519RBE_0262RBE_0262RBE_0519RBE_0492
PSYR205918 PSYR_4282PSYR_4281PSYR_4281PSYR_4282PSYR_1830
PSP56811 PSYCPRWF_0326PSYCPRWF_0327PSYCPRWF_0328PSYCPRWF_0328PSYCPRWF_0327
PPRO298386 PBPRA1158PBPRA2558PBPRA2557PBPRA2557PBPRA2558PBPRA1157
PMUL272843 PM0572PM0974PM0973PM0973PM0974PM0571
PLUT319225 PLUT_0473PLUT_0475PLUT_0474PLUT_0474PLUT_0475PLUT_0472
PLUM243265 PLU1598PLU1449PLU1450PLU1450PLU1449PLU1597
PING357804 PING_3454PING_0720PING_0721PING_0721PING_0720PING_3453
PHAL326442 PSHAA2021PSHAA2018PSHAA2019PSHAA2019PSHAA2018PSHAA2022
PFLU205922 PFL_4893PFL_3385PFL_4892PFL_4893PFL_3884
PENT384676 PSEEN2497PSEEN4777PSEEN2411PSEEN4776PSEEN4777
PATL342610 PATL_1455PATL_1452PATL_1453PATL_1453PATL_1452PATL_1456
PACN267747 PPA0174PPA0176PPA0175PPA0175PPA0176PPA0784
OCAR504832 OCAR_6514OCAR_4639OCAR_4638OCAR_4638OCAR_7320
OANT439375 OANT_3539OANT_3541OANT_3542OANT_3542OANT_3541OANT_3540
NSP35761 NOCA_1227NOCA_0942NOCA_0943NOCA_0943NOCA_0942NOCA_0944
NFAR247156 NFA5870NFA5850NFA5860NFA5860NFA5850NFA7520
MTUB419947 MRA_1631MRA_1633MRA_1632MRA_1632MRA_1633
MTUB336982 TBFG_11637TBFG_11639TBFG_11638TBFG_11638TBFG_11639
MTHE264732 MOTH_2097MOTH_2095MOTH_2096MOTH_2096MOTH_2095MOTH_2098
MTBRV RV1621CRV1623CRV1622CRV1622CRV1623C
MTBCDC MT1657MT1659MT1658MT1658MT1659
MSUC221988 MS0950MS0715MS0716MS0716MS0715MS0949
MSP400668 MMWYL1_1508MMWYL1_1505MMWYL1_1506MMWYL1_1506MMWYL1_1505
MSP189918 MKMS_3097MKMS_3095MKMS_3096MKMS_3096MKMS_3095
MSP164757 MJLS_3054MJLS_3052MJLS_3053MJLS_3053MJLS_3052
MSP164756 MMCS_3038MMCS_3036MMCS_3037MMCS_3037MMCS_3036
MSME246196 MSMEG_5659MSMEG_3233MSMEG_3232MSMEG_3232MSMEG_3233
MEXT419610 MEXT_1360MEXT_1361MEXT_1361MEXT_1360MEXT_2356
MBOV410289 BCG_1659CBCG_1661CBCG_1660CBCG_1660CBCG_1661C
MBOV233413 MB1647CMB1649CMB1648CMB1648CMB1649C
MAVI243243 MAV_3166MAV_3164MAV_3165MAV_3165MAV_3164
MACE188937 MA2472MA1006MA1007MA1007MA1006MA2473
MABS561007 MAB_2632MAB_2630MAB_2631MAB_2631MAB_2630
LXYL281090 LXX12330LXX12300LXX12320LXX12320LXX12300LXX12340
LWEL386043 LWE2668LWE2670LWE2669LWE2669LWE2670LWE2667
LREU557436 LREU_0507LREU_0505LREU_0506LREU_0506LREU_0505LREU_0508
LPNE400673 LPC_1263LPC_0670LPC_0671LPC_0671LPC_0670
LPNE297246 LPP1782LPP1204LPP1205LPP1205LPP1204
LPNE297245 LPL1783LPL1210LPL1211LPL1211LPL1210
LPNE272624 LPG1819LPG1202LPG1203LPG1203LPG1202
LPLA220668 LP_1128LP_1125LP_1126LP_1126LP_1125LP_1129
LMON265669 LMOF2365_2696LMOF2365_2698LMOF2365_2697LMOF2365_2697LMOF2365_2698LMOF2365_2695
LMON169963 LMO2716LMO2718LMO2717LMO2717LMO2718LMO2715
LLAC272623 L110479L107726L109201L109201L107726L112352
LLAC272622 LACR_0739LACR_0737LACR_0738LACR_0738LACR_0737LACR_0740
LJOH257314 LJ_1812LJ_1810LJ_1811LJ_1811LJ_1810LJ_1813
LINN272626 LIN2864LIN2866LIN2865LIN2865LIN2866LIN2863
LGAS324831 LGAS_1841LGAS_1842LGAS_1842LGAS_1841LGAS_1844
LCAS321967 LSEI_2203LSEI_2205LSEI_2204LSEI_2204LSEI_2205LSEI_2202
LBRE387344 LVIS_1640LVIS_1642LVIS_1641LVIS_1641LVIS_1642LVIS_1639
KPNE272620 GKPORF_B5359GKPORF_B5165GKPORF_B5166GKPORF_B5166GKPORF_B5165GKPORF_B5358
JSP375286 MMA_2016MMA_2014MMA_2013MMA_2013MMA_2014MMA_2015
HSOM228400 HSM_1027HSM_0129HSM_0130HSM_0130HSM_0129HSM_1026
HSOM205914 HS_1149HS_0256HS_0257HS_0257HS_0256HS_1150
HNEP81032 HNE_1660HNE_1659HNE_1658HNE_1658HNE_1659
HINF71421 HI_1157HI_1076HI_1075HI_1075HI_1076HI_1156
HINF374930 CGSHIEE_06255CGSHIEE_06700CGSHIEE_06705CGSHIEE_06705CGSHIEE_06700CGSHIEE_06260
HINF281310 NTHI1326NTHI1236NTHI1235NTHI1235NTHI1236NTHI1325
HHAL349124 HHAL_2418HHAL_2420HHAL_2419HHAL_2420HHAL_2417
HDUC233412 HD_1652HD_1782HD_1781HD_1781HD_1782HD_1651
HAUR316274 HAUR_3757HAUR_3759HAUR_3758HAUR_3758HAUR_3759HAUR_4595
HARS204773 HEAR1372HEAR1374HEAR1375HEAR1375HEAR1374HEAR1373
GVIO251221 GLR1300GLL1197GLL1196GLL1196GLL1197GLR1301
GSUL243231 GSU_1215GSU_1640GSU_1641GSU_1641GSU_1640GSU_1216
GMET269799 GMET_2634GMET_1930GMET_1929GMET_1929GMET_1930GMET_2633
FTUL458234 FTA_1580FTA_0204FTA_0203FTA_0203FTA_0204FTA_1581
FTUL418136 FTW_1501FTW_1807FTW_1808FTW_1808FTW_1807FTW_1502
FTUL401614 FTN_0642FTN_0193FTN_0192FTN_0192FTN_0193FTN_0641
FTUL393115 FTF1335FTF0279CFTF0278CFTF0278CFTF0279CFTF1336
FTUL393011 FTH_1450FTH_0184FTH_0183FTH_0183FTH_0184FTH_1451
FTUL351581 FTL_1495FTL_0189FTL_0188FTL_0188FTL_0189FTL_1496
FRANT CYDDCYDACYDBCYDBCYDACYDC
FPHI484022 FPHI_0179FPHI_0633FPHI_0634FPHI_0634FPHI_0633FPHI_0180
ESP42895 ENT638_1411ENT638_1230ENT638_1231ENT638_1231ENT638_1230ENT638_1410
EFER585054 EFER_1035EFER_2371EFER_1186EFER_2370EFER_2371EFER_1034
EFAE226185 EF_2059EF_2061EF_2060EF_2060EF_2061EF_2058
ECOO157 CYDDCYDAAPPBCYDBCYDACYDC
ECOL83334 ECS0972ECS1134ECS1135ECS0769ECS1134ECS0971
ECOL585397 ECED1_0861ECED1_1062ECED1_1063ECED1_0701ECED1_1062ECED1_0860
ECOL585057 ECIAI39_2263ECIAI39_2168ECIAI39_2167ECIAI39_0709ECIAI39_2168ECIAI39_2264
ECOL585056 ECUMN_1082ECUMN_1168ECUMN_1169ECUMN_0822ECUMN_1168ECUMN_1081
ECOL585055 EC55989_0932EC55989_1086EC55989_1087EC55989_0719EC55989_1086EC55989_0931
ECOL585035 ECS88_0916ECS88_1000ECS88_1001ECS88_0757ECS88_1000ECS88_0915
ECOL585034 ECIAI1_0927ECIAI1_1019ECIAI1_1020ECIAI1_0709ECIAI1_1019ECIAI1_0926
ECOL481805 ECOLC_2709ECOLC_2923ECOLC_2617ECOLC_2922ECOLC_2923ECOLC_2710
ECOL469008 ECBD_2708ECBD_2928ECBD_2616ECBD_2927ECBD_2928ECBD_2709
ECOL439855 ECSMS35_2234ECSMS35_0755ECSMS35_2138ECSMS35_0756ECSMS35_0755ECSMS35_2235
ECOL413997 ECB_00891ECB_00981ECB_00982ECB_00693ECB_00981ECB_00890
ECOL409438 ECSE_0945ECSE_1040ECSE_1041ECSE_0794ECSE_1040ECSE_0944
ECOL405955 APECO1_1202APECO1_82APECO1_83APECO1_83APECO1_82APECO1_1203
ECOL364106 UTI89_C0902UTI89_C1046UTI89_C1047UTI89_C0729UTI89_C1046UTI89_C0901
ECOL362663 ECP_0901ECP_0983ECP_0984ECP_0744ECP_0983ECP_0900
ECOL331111 ECE24377A_0960ECE24377A_1093ECE24377A_1094ECE24377A_0762ECE24377A_1093ECE24377A_0959
ECOL316407 ECK0878:JW0870:B0887ECK0969:JW0960:B0978ECK0970:JW0961:B0979ECK0722:JW0723:B0734ECK0969:JW0960:B0978ECK0877:JW0869:B0886
ECOL199310 C1024C1119C1120C0812C1119C1023
ECAR218491 ECA2650ECA2998ECA1366ECA2999ECA2998ECA2651
DVUL882 DVU_3271DVU_3270DVU_3270DVU_3271DVU_1671
DRED349161 DRED_1641DRED_1639DRED_1640DRED_1640DRED_1639DRED_1642
DOLE96561 DOLE_3227DOLE_2649DOLE_2650DOLE_2650DOLE_2649
DNOD246195 DNO_0102DNO_0100DNO_0099DNO_0099DNO_0100DNO_0101
DHAF138119 DSY4054DSY4056DSY4055DSY4055DSY4056DSY4053
DGEO319795 DGEO_2707DGEO_2705DGEO_2704DGEO_2704DGEO_2705
DDES207559 DDE_1602DDE_3204DDE_3205DDE_3205DDE_3204
CTEP194439 CT_1821CT_1818CT_1819CT_1819CT_1818CT_1822
CSP78 CAUL_0633CAUL_0634CAUL_0635CAUL_0635CAUL_0634
CSP501479 CSE45_3785CSE45_3787CSE45_3788CSE45_3788CSE45_3787CSE45_3786
CSAL290398 CSAL_1999CSAL_2001CSAL_2000CSAL_2000CSAL_2001CSAL_1998
CPSY167879 CPS_1879CPS_1876CPS_1877CPS_1877CPS_1876CPS_1880
CMIC443906 CMM_1543CMM_1541CMM_1542CMM_1542CMM_1541CMM_1544
CMIC31964 CMS1764CMS1767CMS1766CMS1766CMS1767CMS1763
CHYD246194 CHY_2443CHY_2445CHY_2444CHY_2444CHY_2445CHY_2442
CDIP257309 DIP2159DIP1898DIP1899DIP1899DIP1898
CAULO CC0761CC0762CC0763CC0763CC0762
BWEI315730 BCERKBAB4_1811BCERKBAB4_4629BCERKBAB4_4630BCERKBAB4_1810BCERKBAB4_4629BCERKBAB4_1812
BTHU412694 BALH_1724BALH_4363BALH_4364BALH_4364BALH_4363BALH_1725
BTHU281309 BT9727_1779BT9727_4528BT9727_4529BT9727_4529BT9727_4528BT9727_1780
BSUI470137 BSUIS_B0505BSUIS_B0507BSUIS_B0508BSUIS_B0508BSUIS_B0507BSUIS_B0506
BSUI204722 BR_A0508BR_A0510BR_A0511BR_A0511BR_A0510BR_A0509
BSUB BSU38740BSU38760BSU38750BSU38750BSU38760BSU38730
BSP36773 BCEP18194_B1962BCEP18194_A6147BCEP18194_A6148BCEP18194_A6148BCEP18194_A6147BCEP18194_B1962
BPUM315750 BPUM_3517BPUM_3519BPUM_3518BPUM_3518BPUM_3519BPUM_3516
BPET94624 BPET0459BPET0456BPET0457BPET0457BPET0456BPET0460
BPER257313 BP0262BP0259BP0260BP0260BP0259BP0263
BPAR257311 BPP4022BPP4025BPP4024BPP4024BPP4025BPP4021
BOVI236 GBOORFA0492GBOORFA0494GBOORFA0495GBOORFA0495GBOORFA0494GBOORFA0493
BMEL359391 BAB2_0730BAB2_0728BAB2_0727BAB2_0727BAB2_0728BAB2_0729
BMEL224914 BMEII0762BMEII0760BMEII0759BMEII0759BMEII0760BMEII0761
BLIC279010 BL00925BL00923BL00924BL00924BL00923BL00926
BCER572264 BCA_2011BCA_4925BCA_4926BCA_4926BCA_4925BCA_2012
BCER405917 BCE_2023BCE_4949BCE_4950BCE_4950BCE_4949BCE_2024
BCER288681 BCE33L1762BCE33L4547BCE33L4548BCE33L4548BCE33L4547BCE33L1763
BCER226900 BC_1940BC_4792BC_4793BC_4793BC_4792BC_1941
BCEN331272 BCEN2424_4081BCEN2424_2817BCEN2424_2818BCEN2424_2818BCEN2424_2817BCEN2424_4081
BCEN331271 BCEN_4285BCEN_2203BCEN_2204BCEN_2204BCEN_2203BCEN_4285
BCAN483179 BCAN_B0507BCAN_B0510BCAN_B0511BCAN_B0511BCAN_B0510BCAN_B0508
BBRO257310 BB4495BB4498BB4497BB4497BB4498BB4494
BANT592021 BAA_2014BAA_5061BAA_5062BAA_5062BAA_5061BAA_2015
BANT568206 BAMEG_2646BAMEG_5084BAMEG_5085BAMEG_5085BAMEG_5084BAMEG_2645
BANT261594 GBAA1945GBAA5050GBAA5051GBAA5051GBAA5050GBAA1946
BANT260799 BAS1805BAS4690BAS4691BAS4691BAS4690BAS1806
BAMY326423 RBAM_035990RBAM_036010RBAM_036000RBAM_036000RBAM_036010RBAM_035980
BAMB339670 BAMB_3493BAMB_2877BAMB_2878BAMB_2878BAMB_2877BAMB_3493
BABO262698 BRUAB2_0714BRUAB2_0712BRUAB2_0711BRUAB2_0711BRUAB2_0712BRUAB2_0713
ASP62928 AZO3572AZO1232AZO1231AZO1231AZO1232
ASP1667 ARTH_1624ARTH_1622ARTH_1623ARTH_1623ARTH_1622
ASAL382245 ASA_3050ASA_2721ASA_0738ASA_0738ASA_2721ASA_3051
APLE434271 APJL_0834APJL_0308APJL_0309APJL_0309APJL_0308APJL_0833
APLE416269 APL_0827APL_0297APL_0298APL_0298APL_0297APL_0826
ANAE240017 ANA_0459ANA_0461ANA_0460ANA_0460ANA_0461ANA_1367
AHYD196024 AHA_3029AHA_1640AHA_3645AHA_3645AHA_1640AHA_3030
AFER243159 AFE_1693AFE_2092AFE_2093AFE_2093AFE_2092AFE_1692
AEHR187272 MLG_1643MLG_2045MLG_2044MLG_2044MLG_2045MLG_1644
ADEH290397 ADEH_1067ADEH_3730ADEH_3731ADEH_3731ADEH_3730
ACRY349163 ACRY_1637ACRY_1635ACRY_1634ACRY_1634ACRY_1635ACRY_1636
ACAU438753 AZC_0582AZC_0584AZC_0585AZC_0585AZC_0584AZC_0583
ABAU360910 BAV3108BAV0991BAV3110BAV3110BAV0991BAV3107
AAUR290340 AAUR_3379AAUR_1768AAUR_1769AAUR_1769AAUR_1768


Organism features enriched in list (features available for 204 out of the 220 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0055565117
Arrangment:Pairs 0.008734249112
Arrangment:Singles 0.0037365114286
Disease:Brucellosis 0.005079655
Disease:Bubonic_plague 0.001748966
Disease:Dysentery 0.001748966
Disease:Gastroenteritis 0.00196181013
Disease:Tularemia 0.005079655
Endospores:No 0.000025752211
GC_Content_Range4:0-40 1.057e-844213
GC_Content_Range4:40-60 1.007e-6105224
GC_Content_Range7:30-40 0.001854944166
GC_Content_Range7:50-60 4.159e-760107
Genome_Size_Range5:0-2 6.036e-1517155
Genome_Size_Range5:4-6 2.155e-19113184
Genome_Size_Range9:1-2 5.418e-1017128
Genome_Size_Range9:2-3 0.000080625120
Genome_Size_Range9:4-5 0.00007615096
Genome_Size_Range9:5-6 2.325e-146388
Gram_Stain:Gram_Neg 0.0027566131333
Habitat:Multiple 0.006683274178
Habitat:Specialized 1.303e-6453
Optimal_temp.:35-37 0.0094568913
Oxygen_Req:Anaerobic 0.000103320102
Oxygen_Req:Facultative 1.840e-9103201
Pathogenic_in:Animal 0.00598483266
Pathogenic_in:Human 0.005830087213
Pathogenic_in:No 0.001136163226
Shape:Coccus 7.155e-61282
Shape:Irregular_coccus 0.0055565117
Shape:Rod 7.814e-17167347
Shape:Spiral 5.088e-6134
Temp._range:Hyperthermophilic 0.0005154123
Temp._range:Mesophilic 0.0000769182473
Temp._range:Thermophilic 0.0009741435



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 248
Effective number of orgs (counting one per cluster within 468 clusters): 207

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SDEG203122 ncbi Saccharophagus degradans 2-400
SAUR273036 ncbi Staphylococcus aureus RF1221
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RETL347834 ncbi Rhizobium etli CFN 421
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CFET360106 ncbi Campylobacter fetus fetus 82-400
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-10


Names of the homologs of the genes in the group in each of these orgs
  EG11405   EG11380   EG11379   EG10174   EG10173   EG10012   
XFAS405440
XFAS183190
XFAS160492
WPIP80849
VEIS391735 VEIS_2441
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1341
TTHE262724 TT_C0976
TSP28240
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP1131
SSOL273057
SSAP342451 SSP2033
SRUB309807 SRU_2284
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SLAC55218
SHAE279808 SH1095
SGOR29390 SGO_0165
SDEG203122
SAUR273036 SAB0634
SALA317655 SALA_1985
SACI330779
RXYL266117
RETL347834 RHE_CH03507
RALB246199
RAKA293614 A1C_01610
PTOR263820
PTHE370438
PSP312153
PSP296591
PPEN278197
PNAP365044
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PHOR70601
PFUR186497
PCRY335284 PCRYO_1695
PAST100379
PARS340102
PARC259536 PSYC_1516
PAER178306
PABY272844
OTSU357244
NSEN222891
NPHA348780 NP0006A
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_3544
NGON242231
NEUT335283
NEUR228410
MXAN246197 MXAN_0748
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_1510
MMAR368407
MMAR267377
MMAG342108
MLOT266835 MLL3934
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MART243272
MAER449447
MAEO419665
LSAK314315
LINT267671
LINT189518
LHEL405566
LDEL390333
LDEL321956
LCHO395495
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP290400 JANN_2914
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569 RRNAC2314
HBUT415426
HACI382638
GTHE420246
GKAU235909 GK1336
GFOR411154 GFO_2529
FSUC59374 FSU2228
FSP1855 FRANEAN1_3554
FSP106370 FRANCCI3_1034
FNUC190304 FN1819
FNOD381764
FMAG334413 FMG_1070
FALN326424 FRAAL1741
ERUM302409
ERUM254945
ELIT314225 ELI_12075
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DRAD243230
DETH243164
DARO159087
CVIO243365 CV_0630
CVES412965
CTRA471473 CTLON_0264
CTRA471472 CTL0269
CSUL444179
CRUT413404
CPHY357809
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEI306537
CJAP155077 CJA_0141
CHUT269798
CFET360106
CDIF272563
CDES477974
CCAV227941 CCA_00669
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CACE272562
BTUR314724
BTRI382640 BT_2411
BSP107806
BQUI283165 BQ11960
BLON206672 BL0264
BHER314723
BHEN283166 BH15040
BGAR290434
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP232721
APHA212042
APER272557
AORE350688 CLOS_1180
AMET293826
AMAR234826
AFUL224325
ABOR393595
AAVE397945


Organism features enriched in list (features available for 232 out of the 248 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0099178217
Disease:Botulism 0.009721355
Disease:Wide_range_of_infections 0.00003431111
Endospores:No 3.599e-9117211
GC_Content_Range4:0-40 3.772e-10120213
GC_Content_Range4:40-60 0.003348575224
GC_Content_Range4:60-100 6.954e-636145
GC_Content_Range7:0-30 2.814e-103947
GC_Content_Range7:30-40 0.001534581166
GC_Content_Range7:50-60 0.003400531107
GC_Content_Range7:60-70 0.000014133134
Genome_Size_Range5:0-2 6.335e-22112155
Genome_Size_Range5:4-6 2.607e-1630184
Genome_Size_Range5:6-10 4.251e-6547
Genome_Size_Range9:0-1 5.985e-122727
Genome_Size_Range9:1-2 3.681e-1285128
Genome_Size_Range9:2-3 0.008532958120
Genome_Size_Range9:4-5 0.00007332296
Genome_Size_Range9:5-6 4.863e-12888
Genome_Size_Range9:6-8 0.0000382438
Gram_Stain:Gram_Neg 5.133e-999333
Habitat:Aquatic 0.00027655191
Habitat:Multiple 1.663e-646178
Habitat:Specialized 0.00003393553
Motility:No 0.002163674151
Motility:Yes 0.003624992267
Optimal_temp.:25-35 0.0071103114
Oxygen_Req:Anaerobic 9.569e-660102
Oxygen_Req:Facultative 1.268e-654201
Pathogenic_in:Animal 0.00013961366
Pathogenic_in:Human 0.001485569213
Pathogenic_in:No 0.0014424106226
Pathogenic_in:Swine 0.009721355
Salinity:Non-halophilic 0.003177754106
Shape:Coccus 0.00004214982
Shape:Irregular_coccus 3.018e-61617
Shape:Pleomorphic 0.007290078
Shape:Rod 6.589e-2480347
Shape:Sphere 4.898e-71819
Shape:Spiral 0.00419082134
Temp._range:Hyperthermophilic 2.539e-62023
Temp._range:Mesophilic 2.875e-6167473
Temp._range:Thermophilic 0.00256242235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
LJOH257314 ncbi Lactobacillus johnsonii NCC 533 0.00271206466
MACE188937 ncbi Methanosarcina acetivorans C2A 0.00289396536
LXYL281090 ncbi Leifsonia xyli xyli CTCB07 0.00292076546
LREU557436 ncbi Lactobacillus reuteri DSM 20016 0.00677077526
ANAE240017 Actinomyces oris MG1 0.00721617606


Names of the homologs of the genes in the group in each of these orgs
  EG11405   EG11380   EG11379   EG10174   EG10173   EG10012   
LJOH257314 LJ_1812LJ_1810LJ_1811LJ_1811LJ_1810LJ_1813
MACE188937 MA2472MA1006MA1007MA1007MA1006MA2473
LXYL281090 LXX12330LXX12300LXX12320LXX12320LXX12300LXX12340
LREU557436 LREU_0507LREU_0505LREU_0506LREU_0506LREU_0505LREU_0508
ANAE240017 ANA_0459ANA_0461ANA_0460ANA_0460ANA_0461ANA_1367


Organism features enriched in list (features available for 4 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Ratoon_stunting_disease 0.006861111



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5148 (acyl-CoA hydrolysis)2271380.4036



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11380   EG11379   EG10174   EG10173   EG10012   
EG114050.9995030.9996150.9996150.9995270.999904
EG113800.9999630.9999550.9999820.9993
EG113790.9999750.9999670.999362
EG101740.9999550.999388
EG101730.999266
EG10012



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PAIRWISE BLAST SCORES:

  EG11405   EG11380   EG11379   EG10174   EG10173   EG10012   
EG114050.0f0-----
EG11380-0.0f0--0-
EG11379--0.0f01.4e-108--
EG10174--7.5e-1170.0f0--
EG10173-0--0.0f0-
EG10012-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-6-CPLX (glutathione ABC transporter CydDC) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9993 EG10012 (cydC) CYDC-MONOMER (CydC)
   *in cand* 0.9997 0.9995 EG11405 (cydD) CYDD-MONOMER (CydD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9993 EG10173 (cydA) CYDA-MONOMER (cytochrome bd-I terminal oxidase subunit I)
   *in cand* 0.9998 0.9994 EG10174 (cydB) CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
   *in cand* 0.9998 0.9994 EG11379 (appB) APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
   *in cand* 0.9998 0.9993 EG11380 (appC) APPC-MONOMER (cytochrome bd-II terminal oxidase subunit I)

- PWY0-1334 (NADH to cytochrome bd oxidase electron transfer) (degree of match pw to cand: 0.235, degree of match cand to pw: 0.667, average score: 0.831)
  Genes in pathway or complex:
             0.5257 0.2850 EG12083 (nuoB) NUOB-MONOMER (NADH:ubiquinone oxidoreductase, chain B)
             0.5002 0.1915 EG12084 (nuoC) NUOC-MONOMER (NADH:ubiquinone oxidoreductase, chain CD)
             0.4427 0.2135 EG12089 (nuoI) NUOI-MONOMER (NADH:ubiquinone oxidoreductase, chain I)
             0.6800 0.5566 EG12086 (nuoE) NUOE-MONOMER (NADH:ubiquinone oxidoreductase, chain E)
             0.5921 0.4272 EG11774 (nuoF) NUOF-MONOMER (NADH:ubiquinone oxidoreductase, chain F)
             0.5542 0.3903 EG12087 (nuoG) NUOG-MONOMER (NADH:ubiquinone oxidoreductase, chain G)
             0.4346 0.2319 EG12093 (nuoN) NUON-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit N)
             0.4932 0.3405 EG11773 (nuoM) NUOM-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit M)
             0.4459 0.1669 EG12092 (nuoL) NUOL-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit L)
             0.4926 0.2097 EG12091 (nuoK) NUOK-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit K)
             0.5537 0.3740 EG12090 (nuoJ) NUOJ-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit J)
             0.4502 0.3213 EG12088 (nuoH) NUOH-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit H)
             0.5111 0.2809 EG12082 (nuoA) NUOA-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit A)
   *in cand* 0.9998 0.9994 EG10174 (cydB) CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
   *in cand* 0.9998 0.9993 EG10173 (cydA) CYDA-MONOMER (cytochrome bd-I terminal oxidase subunit I)
   *in cand* 0.9998 0.9994 EG11379 (appB) APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
   *in cand* 0.9998 0.9993 EG11380 (appC) APPC-MONOMER (cytochrome bd-II terminal oxidase subunit I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10012 (cydC) CYDC-MONOMER (CydC)
   *in cand* 0.9997 0.9995 EG11405 (cydD) CYDD-MONOMER (CydD)

- CYT-D-UBIOX-CPLX (cytochrome bd-I terminal oxidase) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9994 EG10174 (cydB) CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
   *in cand* 0.9998 0.9993 EG10173 (cydA) CYDA-MONOMER (cytochrome bd-I terminal oxidase subunit I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10012 (cydC) CYDC-MONOMER (CydC)
   *in cand* 0.9998 0.9994 EG11379 (appB) APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
   *in cand* 0.9998 0.9993 EG11380 (appC) APPC-MONOMER (cytochrome bd-II terminal oxidase subunit I)
   *in cand* 0.9997 0.9995 EG11405 (cydD) CYDD-MONOMER (CydD)

- APP-UBIOX-CPLX (cytochrome bd-II terminal oxidase) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9994 EG11379 (appB) APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
   *in cand* 0.9998 0.9993 EG11380 (appC) APPC-MONOMER (cytochrome bd-II terminal oxidase subunit I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10012 (cydC) CYDC-MONOMER (CydC)
   *in cand* 0.9998 0.9993 EG10173 (cydA) CYDA-MONOMER (cytochrome bd-I terminal oxidase subunit I)
   *in cand* 0.9998 0.9994 EG10174 (cydB) CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
   *in cand* 0.9997 0.9995 EG11405 (cydD) CYDD-MONOMER (CydD)

- PWY0-1353 (succinate to cytochrome bd oxidase electron transfer) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.667, average score: 0.990)
  Genes in pathway or complex:
             0.9648 0.9056 EG10934 (sdhD) SDH-MEMB2 (succinate dehydrogenase membrane protein)
             0.9732 0.9257 EG10933 (sdhC) SDH-MEMB1 (succinate dehydrogenase membrane protein)
             0.9753 0.9421 EG10932 (sdhB) SDH-FE-S (succinate dehydrogenase iron-sulfur protein)
             0.9658 0.9213 EG10931 (sdhA) SDH-FLAVO (succinate dehydrogenase flavoprotein)
   *in cand* 0.9998 0.9994 EG10174 (cydB) CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
   *in cand* 0.9998 0.9993 EG10173 (cydA) CYDA-MONOMER (cytochrome bd-I terminal oxidase subunit I)
   *in cand* 0.9998 0.9994 EG11379 (appB) APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
   *in cand* 0.9998 0.9993 EG11380 (appC) APPC-MONOMER (cytochrome bd-II terminal oxidase subunit I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10012 (cydC) CYDC-MONOMER (CydC)
   *in cand* 0.9997 0.9995 EG11405 (cydD) CYDD-MONOMER (CydD)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11379 EG11380 (centered at EG11379)
EG10012 EG11405 (centered at EG11405)
EG10173 EG10174 (centered at EG10174)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11405   EG11380   EG11379   EG10174   EG10173   EG10012   
286/623290/623303/623304/623298/623282/623
AAEO224324:0:Tyes-0110-
AAUR290340:2:Tyes15730110-
ABAC204669:0:Tyes0-885885--
ABAU360910:0:Tyes212402126212602123
ABUT367737:0:Tyes-0--0-
ACAU438753:0:Tyes023321
ACEL351607:0:Tyes0-112-
ACRY349163:8:Tyes310012
ADEH290397:0:Tyes02694269526952694-
AEHR187272:0:Tyes03983973973981
AFER243159:0:Tyes13994004003990
AHYD196024:0:Tyes135601926192601357
ALAI441768:0:Tyes0----0
AMAR329726:9:Tyes--0--350
ANAE240017:0:Tyes02112831
AORE350688:0:Tyes-----0
APLE416269:0:Tyes5310110530
APLE434271:0:Tno5000110499
ASAL382245:5:Tyes221719050019052218
ASP1667:3:Tyes20110-
ASP62928:0:Tyes23751001-
ASP62977:0:Tyes-0110-
ASP76114:2:Tyes0-376376377-
AVAR240292:2:Tyes--0-1-
AVAR240292:3:Tyes-0----
BABO262698:0:Tno310012
BAMB339670:2:Tno0----0
BAMB339670:3:Tno-0110-
BAMB398577:3:Tno-0110-
BAMY326423:0:Tyes132230
BANT260799:0:Tno028672868286828671
BANT261594:2:Tno028722873287328721
BANT568206:2:Tyes123572358235823570
BANT592021:2:Tno030203021302130201
BBRO257310:0:Tyes143340
BCAN483179:0:Tno034431
BCEN331271:1:Tno0----0
BCEN331271:2:Tno-0110-
BCEN331272:2:Tyes0----0
BCEN331272:3:Tyes-0110-
BCER226900:1:Tyes027882789278927881
BCER288681:0:Tno027682769276927681
BCER315749:1:Tyes-0110-
BCER405917:1:Tyes027712772277227711
BCER572264:1:Tno028832884288428831
BCLA66692:0:Tyes510----0
BFRA272559:1:Tyes-0--0-
BFRA295405:0:Tno-0--0-
BHAL272558:0:Tyes0----1
BHEN283166:0:Tyes-----0
BJAP224911:0:Fyes--0-11243
BLIC279010:0:Tyes132230
BLON206672:0:Tyes0-----
BMAL243160:1:Tno-1001-
BMAL320388:1:Tno-1001-
BMAL320389:1:Tyes-0110-
BMEL224914:0:Tno310012
BMEL359391:0:Tno310012
BOVI236:0:Tyes023321
BPAR257311:0:Tno143340
BPER257313:0:Tyes301104
BPET94624:0:Tyes301104
BPSE272560:1:Tyes-1001-
BPSE320372:1:Tno-1001-
BPSE320373:1:Tno-1001-
BPUM315750:0:Tyes132230
BQUI283165:0:Tyes-----0
BSP36773:1:Tyes0----0
BSP36773:2:Tyes-0110-
BSP376:0:Tyes--54445444-0
BSUB:0:Tyes132230
BSUI204722:0:Tyes023321
BSUI470137:0:Tno023321
BTHA271848:1:Tno-1001-
BTHE226186:0:Tyes0719--719-
BTHU281309:1:Tno027292730273027291
BTHU412694:1:Tno025172518251825171
BTRI382640:1:Tyes-----0
BVIE269482:7:Tyes-0110-
BWEI315730:4:Tyes127432744027432
BXEN266265:1:Tyes-1001-
CABO218497:0:Tyes--00--
CAULO:0:Tyes01221-
CBUR227377:1:Tyes-0110-
CBUR360115:1:Tno-1001-
CBUR434922:2:Tno-100767-
CCAV227941:1:Tyes---0--
CCHL340177:0:Tyes0----1
CCON360104:2:Tyes-0--0-
CCUR360105:0:Tyes-0--0-
CDIP257309:0:Tyes2400110-
CEFF196164:0:Fyes0-11--
CFEL264202:1:Tyes---10-
CGLU196627:0:Tyes0-11--
CHOM360107:1:Tyes-0--0-
CHYD246194:0:Tyes132230
CJAP155077:0:Tyes-----0
CJEJ192222:0:Tyes-0--0-
CJEJ195099:0:Tno-0--0-
CJEJ354242:2:Tyes-0--0-
CJEJ360109:0:Tyes-0--0-
CJEJ407148:0:Tno-0--0-
CMIC31964:2:Tyes143340
CMIC443906:2:Tyes201103
CNOV386415:0:Tyes0----1
CPER195102:1:Tyes0----1
CPER195103:0:Tno0----1
CPER289380:3:Tyes0----1
CPNE115711:1:Tyes--00--
CPNE115713:0:Tno--00--
CPNE138677:0:Tno--00--
CPNE182082:0:Tno--00--
CPRO264201:0:Fyes-100--
CPSY167879:0:Tyes301104
CSAL290398:0:Tyes132230
CSP501479:7:Fyes023321
CSP78:2:Tyes01221-
CTEP194439:0:Tyes301104
CTET212717:0:Tyes0----1
CTRA471472:0:Tyes--0---
CTRA471473:0:Tno--0---
CVIO243365:0:Tyes-----0
DDES207559:0:Tyes01633163416341633-
DGEO319795:0:Tyes02332-
DHAF138119:0:Tyes132230
DNOD246195:0:Tyes310012
DOLE96561:0:Tyes5900110-
DPSY177439:2:Tyes-0--0-
DRED349161:0:Tyes201103
DVUL882:1:Tyes-15911590159015910
ECAR218491:0:Tyes128316370163816371284
ECOL199310:0:Tno2113023030302210
ECOL316407:0:Tno1562472480247155
ECOL331111:6:Tno1913183190318190
ECOL362663:0:Tno1562372380237155
ECOL364106:1:Tno1733173180317172
ECOL405955:2:Tyes11181191191180
ECOL409438:6:Tyes1592552560255158
ECOL413997:0:Tno2062972980297205
ECOL439855:4:Tno144501350101446
ECOL469008:0:Tno93314031331494
ECOL481805:0:Tno91311031031192
ECOL585034:0:Tno2223163170316221
ECOL585035:0:Tno1582412420241157
ECOL585055:0:Tno2123693700369211
ECOL585056:2:Tno2653533540353264
ECOL585057:0:Tno155014531452014531551
ECOL585397:0:Tno1603653660365159
ECOL83334:0:Tno2103773780377209
ECOLI:0:Tno15824925010157
ECOO157:0:Tno312046710311
EFAE226185:3:Tyes132230
EFER585054:1:Tyes11326151132513260
ELIT314225:0:Tyes-----0
ESP42895:1:Tyes1850110184
FALN326424:0:Tyes0-----
FJOH376686:0:Tyes--00--
FMAG334413:1:Tyes0-----
FNUC190304:0:Tyes0-----
FPHI484022:1:Tyes04634644644631
FRANT:0:Tno9881001989
FSP106370:0:Tyes0-----
FSP1855:0:Tyes0-----
FSUC59374:0:Tyes0-----
FTUL351581:0:Tno115810011159
FTUL393011:0:Tno105010011051
FTUL393115:0:Tyes9731001974
FTUL401614:0:Tyes4451001444
FTUL418136:0:Tno02552562562551
FTUL458234:0:Tno109210011093
GBET391165:0:Tyes737-00-738
GFOR411154:0:Tyes-----0
GKAU235909:1:Tyes-----0
GMET269799:1:Tyes6991001698
GOXY290633:5:Tyes0----1
GSUL243231:0:Tyes04234244244231
GURA351605:0:Tyes-1001-
GVIO251221:0:Tyes1061001107
HARS204773:0:Tyes023321
HAUR316274:2:Tyes02112847
HCHE349521:0:Tyes-10-11923
HDUC233412:0:Tyes11091081081090
HHAL349124:0:Tyes132-30
HHEP235279:0:Tyes-0--0-
HINF281310:0:Tyes75100174
HINF374930:0:Tyes0818282811
HINF71421:0:Tno81100180
HMAR272569:8:Tyes0-----
HMOD498761:0:Tyes-1001-
HNEP81032:0:Tyes21001-
HSOM205914:1:Tyes8970110898
HSOM228400:0:Tno9180110917
ILOI283942:0:Tyes--00-1500
JSP290400:1:Tyes-----0
JSP375286:0:Tyes310012
KPNE272620:2:Tyes1870110186
KRAD266940:2:Fyes2359-0--1687
LBRE387344:2:Tyes-21120
LCAS321967:1:Tyes132230
LGAS324831:0:Tyes-01103
LINN272626:1:Tno132230
LINT363253:3:Tyes-0110-
LJOH257314:0:Tyes201103
LLAC272622:5:Tyes201103
LLAC272623:0:Tyes201103
LMES203120:1:Tyes2-110-
LMON169963:0:Tno132230
LMON265669:0:Tyes132230
LPLA220668:0:Tyes201103
LPNE272624:0:Tno6160110-
LPNE297245:1:Fno5650110-
LPNE297246:1:Fyes5770110-
LPNE400673:0:Tno5800110-
LREU557436:0:Tyes201103
LSPH444177:1:Tyes0----2111
LWEL386043:0:Tyes132230
LXYL281090:0:Tyes201103
MABS561007:1:Tyes20110-
MACE188937:0:Tyes142201101423
MAQU351348:2:Tyes1-00-2
MAVI243243:0:Tyes20110-
MBAR269797:1:Tyes-1001-
MBOV233413:0:Tno02112-
MBOV410289:0:Tno02112-
MCAP243233:0:Tyes-0110-
MEXT419610:0:Tyes-01101001
MFLA265072:0:Tyes-608---0
MGIL350054:3:Tyes-0110-
MHUN323259:0:Tyes0----3
MLOT266835:2:Tyes-----0
MMAR394221:0:Tyes-----0
MPET420662:1:Tyes--00--
MSME246196:0:Tyes24011001-
MSP164756:1:Tno20110-
MSP164757:0:Tno20110-
MSP189918:2:Tyes20110-
MSP266779:3:Tyes-01-0765
MSP400668:0:Tyes30110-
MSP409:2:Tyes--2926292602932
MSUC221988:0:Tyes2480110247
MTBCDC:0:Tno02112-
MTBRV:0:Tno02112-
MTHE264732:0:Tyes201103
MTUB336982:0:Tno02112-
MTUB419947:0:Tyes02112-
MVAN350058:0:Tyes-1001-
MXAN246197:0:Tyes-----0
NARO279238:0:Tyes-01-02198
NFAR247156:2:Tyes20110173
NHAM323097:2:Tyes-----0
NPHA348780:2:Tyes0-----
NSP103690:6:Tyes-10---
NSP35761:1:Tyes27601102
NSP387092:0:Tyes-0--0-
NWIN323098:0:Tyes0----1532
OANT439375:4:Tyes023321
OCAR504832:0:Tyes1877100-2680
OIHE221109:0:Tyes0----1
PACN267747:0:Tyes02112620
PAER208963:0:Tyes34150-10-
PAER208964:0:Tno-1-01-
PARC259536:0:Tyes---0--
PATL342610:0:Tyes301104
PCAR338963:0:Tyes-0110-
PCRY335284:1:Tyes---0--
PDIS435591:0:Tyes-0--0-
PENT384676:0:Tyes832226022252226-
PFLU205922:0:Tyes-1536015351536503
PFLU216595:1:Tyes-3654-365336540
PFLU220664:0:Tyes-1598115970-
PGIN242619:0:Tyes2380--0-
PHAL326442:1:Tyes301104
PING357804:0:Tyes257001102569
PINT246198:0:Tyes-0--0-
PINT246198:1:Tyes-----0
PLUM243265:0:Fyes1580110157
PLUT319225:0:Tyes132230
PMEN399739:0:Tyes-154-155-0
PMUL272843:1:Tyes14034024024030
PPRO298386:2:Tyes113931392139213930
PPUT160488:0:Tno02042-20412042-
PPUT351746:0:Tyes-1-01-
PPUT76869:0:Tno-1391013901391-
PRUM264731:0:Tyes-0--0-
PSP117:0:Tyes-0110-
PSP56811:2:Tyes01221-
PSTU379731:0:Tyes-0110-
PSYR205918:0:Tyes-24632462246224630
PSYR223283:2:Tyes-2591-259025910
RAKA293614:0:Fyes----0-
RBEL336407:0:Tyes-26300263235
RBEL391896:0:Fno-24693693240
RCAN293613:0:Fyes--1-0448
RCAS383372:0:Tyes0----271
RCON272944:0:Tno---10807
RDEN375451:4:Tyes905-00-1119
RETL347834:5:Tyes0-----
REUT264198:2:Tyes-0110-
REUT381666:1:Tyes-10-1-
RFEL315456:2:Tyes---1271240
RFER338969:1:Tyes-01101131
RLEG216596:2:Tyes023321
RMAS416276:1:Tyes---10-
RMET266264:1:Tyes-0110-
RPAL258594:0:Tyes--39063906-0
RPAL316055:0:Tyes--00-125
RPAL316056:0:Tyes--00-706
RPAL316057:0:Tyes--3838-0
RPAL316058:0:Tyes201103
RPOM246200:1:Tyes23----0
RPRO272947:0:Tyes--110-
RRIC392021:0:Fno---10-
RRIC452659:0:Tyes---10-
RRUB269796:1:Tyes318--0--
RSAL288705:0:Tyes392100--
RSOL267608:0:Tyes--00--
RSOL267608:1:Tyes0-----
RSP101510:3:Fyes2-110111
RSP357808:0:Tyes0----1
RSPH272943:3:Tyes0-132132--
RSPH272943:4:Tyes-----0
RSPH349101:1:Tno0-142142--
RSPH349101:2:Tno-----0
RSPH349102:4:Tyes74-00--
RTYP257363:0:Tno---10-
SACI56780:0:Tyes-0110384
SAGA205921:0:Tno1322-0
SAGA208435:0:Tno1322-0
SAGA211110:0:Tyes1322-0
SALA317655:1:Tyes-----0
SARE391037:0:Tyes116601659165916600
SAUR158878:1:Tno0----1
SAUR158879:1:Tno0----1
SAUR196620:0:Tno0----1
SAUR273036:0:Tno-----0
SAUR282458:0:Tno0----1
SAUR282459:0:Tno0----1
SAUR359786:1:Tno0----1
SAUR359787:1:Tno0----1
SAUR367830:3:Tno0----1
SAUR418127:0:Tyes0----1
SAUR426430:0:Tno0----1
SAUR93061:0:Fno0----1
SAUR93062:1:Tno0----1
SAVE227882:1:Fyes021120
SBAL399599:3:Tyes022832282228222831
SBAL402882:1:Tno021662165216521661
SBOY300268:1:Tyes2201563156201563219
SCO:2:Fyes2011-2
SDEN318161:0:Tyes14234244244230
SDYS300267:1:Tyes160526326402631606
SELO269084:0:Tyes-926927-9260
SENT209261:0:Tno8481001010001001849
SENT220341:0:Tno1530101110152
SENT295319:0:Tno7228800879880723
SENT321314:2:Tno1730110172
SENT454169:2:Tno1791087108801087178
SEPI176279:1:Tyes0----1
SEPI176280:0:Tno0----1
SERY405948:0:Tyes89-8888870
SFLE198214:0:Tyes2884184190418287
SFLE373384:0:Tno2603653660365259
SFUM335543:0:Tyes10431001-
SGLO343509:3:Tyes2270110226
SGOR29390:0:Tyes-----0
SHAE279808:0:Tyes-----0
SHAL458817:0:Tyes227301102272
SHIGELLA:0:Tno2874314320431286
SLOI323850:0:Tyes06966976976961
SMED366394:2:Tyes0-----
SMED366394:3:Tyes---0-2463
SMEL266834:1:Tyes0-----
SMEL266834:2:Tyes--00-2256
SONE211586:1:Tyes4911001490
SPEA398579:0:Tno226901102268
SPRO399741:1:Tyes4120110411
SRUB309807:1:Tyes-----0
SSAP342451:2:Tyes-----0
SSED425104:0:Tyes7481001747
SSON300269:1:Tyes1932832840283192
SSP1148:0:Tyes-01-0-
SSP292414:2:Tyes157----0
SSP321327:0:Tyes--1295-12940
SSP321332:0:Tyes--1-0928
SSP644076:3:Fyes--00--
SSP644076:7:Fyes0----190
SSP94122:1:Tyes04484494494481
STHE292459:0:Tyes213601102720
STRO369723:0:Tyes115071506150615070
STYP99287:1:Tyes2131037103801037212
TDEN243275:0:Tyes0----1
TELO197221:0:Tyes-649648-6490
TFUS269800:0:Tyes132230
TSP1755:0:Tyes0----0
TTEN273068:0:Tyes0----0
TTHE262724:1:Tyes0-----
TTHE300852:2:Tyes0-----
TTUR377629:0:Tyes322632293228322832290
VCHO:0:Tyes16606596596600
VCHO345073:1:Tno16276266266270
VEIS391735:1:Tyes0-----
VFIS312309:2:Tyes1555656550
VPAR223926:1:Tyes1980110197
VVUL196600:2:Tyes18338328328330
VVUL216895:1:Tno6050110606
WPIP955:0:Tyes-011--
WSUC273121:0:Tyes-0--0-
XAUT78245:1:Tyes119610-11197
XAXO190486:0:Tyes123320
XCAM190485:0:Tyes123320
XCAM314565:0:Tno210013
XCAM316273:0:Tno123320
XCAM487884:0:Tno210013
XORY291331:0:Tno2042-00-2041
XORY342109:0:Tyes1942-00-1941
XORY360094:0:Tno40--06
YENT393305:1:Tyes113511350135013510
YPES187410:5:Tno02652642642651
YPES214092:3:Tno2430110242
YPES349746:2:Tno2100110209
YPES360102:3:Tyes71011070
YPES377628:2:Tno02802792792801
YPES386656:2:Tno02582572572581
YPSE273123:2:Tno2540110253
YPSE349747:2:Tno02742732732741
ZMOB264203:0:Tyes---0-226



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