CANDIDATE ID: 506

CANDIDATE ID: 506

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9926113e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.3333333e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12125 (hisQ) (b2308)
   Products of gene:
     - HISQ-MONOMER (HisQ)
     - ABC-3-CPLX (lysine/arginine/ornithine ABC Transporter)
       Reactions:
        ATP + L-ornithine[periplasmic space] + H2O  ->  ADP + phosphate + L-ornithine[cytosol]
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]
        L-lysine[periplasmic space] + ATP + H2O  ->  L-lysine[cytosol] + ADP + phosphate
     - ABC-14-CPLX (histidine ABC transporter)
       Reactions:
        ATP + L-histidine[periplasmic space] + H2O  ->  ADP + phosphate + L-histidine[cytosol]

- EG12124 (hisJ) (b2309)
   Products of gene:
     - HISJ-MONOMER (HisJ)
     - ABC-14-CPLX (histidine ABC transporter)
       Reactions:
        ATP + L-histidine[periplasmic space] + H2O  ->  ADP + phosphate + L-histidine[cytosol]

- EG11628 (artJ) (b0860)
   Products of gene:
     - ARTJ-MONOMER (ArtJ)
     - ABC-4-CPLX (arginine ABC transporter)
       Reactions:
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]

- EG11625 (artI) (b0863)
   Products of gene:
     - ARTI-MONOMER (ArtI)
     - ABC-4-CPLX (arginine ABC transporter)
       Reactions:
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]

- EG10072 (argT) (b2310)
   Products of gene:
     - ARGT-MONOMER (ArgT)
     - ABC-3-CPLX (lysine/arginine/ornithine ABC Transporter)
       Reactions:
        ATP + L-ornithine[periplasmic space] + H2O  ->  ADP + phosphate + L-ornithine[cytosol]
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]
        L-lysine[periplasmic space] + ATP + H2O  ->  L-lysine[cytosol] + ADP + phosphate

- EG10007 (hisM) (b2307)
   Products of gene:
     - HISM-MONOMER (HisM)
     - ABC-3-CPLX (lysine/arginine/ornithine ABC Transporter)
       Reactions:
        ATP + L-ornithine[periplasmic space] + H2O  ->  ADP + phosphate + L-ornithine[cytosol]
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]
        L-lysine[periplasmic space] + ATP + H2O  ->  L-lysine[cytosol] + ADP + phosphate
     - ABC-14-CPLX (histidine ABC transporter)
       Reactions:
        ATP + L-histidine[periplasmic space] + H2O  ->  ADP + phosphate + L-histidine[cytosol]



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 118
Effective number of orgs (counting one per cluster within 468 clusters): 66

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSON300269 ncbi Shigella sonnei Ss0466
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SBOY300268 ncbi Shigella boydii Sb2276
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1186
RETL347834 ncbi Rhizobium etli CFN 426
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL15
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM16
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
BXEN266265 ncbi Burkholderia xenovorans LB4006
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTRI382640 ncbi Bartonella tribocorum CIP 1054766
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUI470137 ncbi Brucella suis ATCC 234456
BSUI204722 ncbi Brucella suis 13306
BSP36773 Burkholderia sp.6
BQUI283165 ncbi Bartonella quintana Toulouse5
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BHEN283166 ncbi Bartonella henselae Houston-16
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BCAN483179 ncbi Brucella canis ATCC 233656
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AHYD196024 Aeromonas hydrophila dhakensis6


Names of the homologs of the genes in the group in each of these orgs
  EG12125   EG12124   EG11628   EG11625   EG10072   EG10007   
YPSE349747 YPSIP31758_1429YPSIP31758_1428YPSIP31758_2639YPSIP31758_2626YPSIP31758_1428YPSIP31758_1430
YPSE273123 YPTB2609YPTB2610YPTB1367YPTB1377YPTB2610YPTB2608
YPES386656 YPDSF_1986YPDSF_1987YPDSF_2359YPDSF_2347YPDSF_1987YPDSF_1985
YPES377628 YPN_2172YPN_2173YPN_2643YPN_2632YPN_2173YPN_2171
YPES360102 YPA_2067YPA_2068YPA_0627YPA_0638YPA_2068YPA_2066
YPES349746 YPANGOLA_A0352YPANGOLA_A0353YPANGOLA_A1569YPANGOLA_A1582YPANGOLA_A0353YPANGOLA_A0351
YPES214092 YPO2775YPO2774YPO1351YPO1351YPO2774YPO2776
YPES187410 Y1608Y1607Y2844Y2830Y1607Y1609
YENT393305 YE1319YE1318YE1491YE1495YE1318YE1320
VVUL216895 VV1_2103VV1_2102VV2_0816VV2_0816VV1_2102VV1_2104
VVUL196600 VV2337VV2338VVA1280VVA1280VV2338VV2336
VPAR223926 VP1000VP0999VPA0637VPA0637VP0999VP1001
VFIS312309 VF1586VF1587VF1587VF1587VF1587VF1585
VEIS391735 VEIS_1926VEIS_0335VEIS_1928VEIS_1928VEIS_0335VEIS_1927
VCHO345073 VC0395_A1453VC0395_A1454VC0395_0700VC0395_0700VC0395_A1454VC0395_A1452
VCHO VC1862VC1863VCA0759VCA0759VC1863VC1861
STYP99287 STM2353STM2354STM0887STM0890STM2355STM2352
SSON300269 SSO_2366SSO_2367SSO_0845SSO_0848SSO_2368SSO_2365
SPRO399741 SPRO_3325SPRO_3326SPRO_1652SPRO_1655SPRO_3326SPRO_3324
SMEL266834 SMC02258SMC02259SMC00140SMB20706SMC02259SMA0492
SMED366394 SMED_0174SMED_0175SMED_1588SMED_4274SMED_0175SMED_1590
SHIGELLA HISQHISJARTJARTIARGTHISM
SGLO343509 SG1094SG1095SG1095SG1095SG1095SG1093
SFLE373384 SFV_2375SFV_2376SFV_0845SFV_0848SFV_2377SFV_2374
SFLE198214 AAN43897.1AAN43898.1AAN42447.1AAN42450.1AAN43899.1AAN43896.1
SENT454169 SEHA_C2594SEHA_C2595SEHA_C1022SEHA_C1025SEHA_C2596SEHA_C2593
SENT321314 SCH_2354SCH_2355SCH_0879SCH_0882SCH_2356SCH_2353
SENT295319 SPA0511SPA0510SPA1875SPA1872SPA0509SPA0512
SENT220341 STY2583STY2584STY0920STY0923STY2585STY2582
SENT209261 T0511T0510T2009T2006T0509T0512
SDYS300267 SDY_2507SDY_2508SDY_2405SDY_2405SDY_2509SDY_2506
SBOY300268 SBO_2345SBO_2346SBO_0794SBO_0797SBO_2347SBO_2344
RRUB269796 RRU_A2252RRU_A2251RRU_A2251RRU_A2251RRU_A2251RRU_A2253
RLEG216596 PRL100411PRL100410RL2753RL2753PRL100410PRL110213
RFER338969 RFER_1524RFER_1525RFER_1525RFER_1525RFER_1525RFER_1523
RETL347834 RHE_PE00078RHE_PC00160RHE_CH02418RHE_CH02418RHE_PC00160RHE_PE00079
PSYR223283 PSPTO_4137PSPTO_1826PSPTO_1826PSPTO_1826PSPTO_1826PSPTO_4138
PSYR205918 PSYR_3875PSYR_3571PSYR_3571PSYR_3571PSYR_3571PSYR_3876
PSTU379731 PST_4105PST_4104PST_4104PST_4104PST_4104PST_4106
PPUT76869 PPUTGB1_3990PPUTGB1_3991PPUTGB1_0305PPUTGB1_3991PPUTGB1_3991PPUTGB1_3989
PPUT351746 PPUT_1430PPUT_1429PPUT_0300PPUT_1429PPUT_1429PPUT_1431
PPUT160488 PP_4485PP_4486PP_0282PP_0282PP_4486PP_4484
PPRO298386 PBPRA2740PBPRA2741PBPRA2074PBPRA2074PBPRB1128PBPRA2739
PMEN399739 PMEN_2915PMEN_3578PMEN_4270PMEN_4270PMEN_3578PMEN_2914
PLUM243265 PLU1586PLU1587PLU1587PLU1587PLU1587PLU4485
PING357804 PING_2832PING_2833PING_2833PING_2833PING_2833PING_2831
PFLU220664 PFL_1266PFL_2252PFL_0342PFL_2252PFL_2252PFL_1265
PFLU216595 PFLU1310PFLU4765PFLU4765PFLU4765PFLU4765PFLU1309
PFLU205922 PFL_1209PFL_2064PFL_0311PFL_2064PFL_0967PFL_1208
PENT384676 PSEEN1857PSEEN1858PSEEN5208PSEEN3887PSEEN3887PSEEN1856
PCRY335284 PCRYO_0328PCRYO_0327PCRYO_0326PCRYO_0326PCRYO_0329
PARC259536 PSYC_0297PSYC_0295PSYC_0296PSYC_0296PSYC_0298
PAER208964 PA2924PA2923PA5153PA5153PA2923PA2925
PAER208963 PA14_26230PA14_26240PA14_68070PA14_68070PA14_26240PA14_26220
OANT439375 OANT_3519OANT_2214OANT_2214OANT_3710OANT_3710OANT_3520
MSUC221988 MS0221MS0220MS0704MS0220MS0220MS0222
MSP400668 MMWYL1_1114MMWYL1_1113MMWYL1_1113MMWYL1_1113MMWYL1_1115
MSP266779 MESO_1563MESO_1562MESO_1562MESO_1562MESO_1562MESO_1564
MPET420662 MPE_A2880MPE_A2879MPE_A2879MPE_A2879MPE_A2879MPE_A2881
MLOT266835 MLL6986MLL5202MLR5654MLR0549MLL5202MLL6985
KPNE272620 GKPORF_B2006GKPORF_B2007GKPORF_B5331GKPORF_B5334GKPORF_B2009GKPORF_B2005
HINF71421 HI_1178HI_1179HI_1179HI_1179HI_1179HI_1177
HINF374930 CGSHIEE_06155CGSHIEE_06150CGSHIEE_06150CGSHIEE_06150CGSHIEE_06150CGSHIEE_06160
HINF281310 NTHI1346NTHI1347NTHI1347NTHI1347NTHI1347NTHI1345
HCHE349521 HCH_05215HCH_05214HCH_05214HCH_05214HCH_05214HCH_05216
ESP42895 ENT638_2857ENT638_2858ENT638_1376ENT638_1379ENT638_2859ENT638_2856
EFER585054 EFER_0855EFER_0854EFER_1003EFER_1006EFER_0853EFER_0856
ECOO157 HISQHISJARTJARTIARGTHISM
ECOL83334 ECS3192ECS3193ECS0943ECS0946ECS3194ECS3191
ECOL585397 ECED1_2772ECED1_2773ECED1_0825ECED1_0828ECED1_2774ECED1_2771
ECOL585057 ECIAI39_2457ECIAI39_2458ECIAI39_0840ECIAI39_0843ECIAI39_2459ECIAI39_2456
ECOL585056 ECUMN_2648ECUMN_2649ECUMN_1053ECUMN_1056ECUMN_2650ECUMN_2647
ECOL585055 EC55989_2552EC55989_2553EC55989_0905EC55989_0908EC55989_2554EC55989_2551
ECOL585035 ECS88_2455ECS88_2456ECS88_0877ECS88_0881ECS88_2457ECS88_2454
ECOL585034 ECIAI1_2384ECIAI1_2385ECIAI1_0899ECIAI1_0902ECIAI1_2385ECIAI1_2383
ECOL481805 ECOLC_1344ECOLC_1343ECOLC_2736ECOLC_2733ECOLC_1342ECOLC_1345
ECOL469008 ECBD_1351ECBD_1350ECBD_2734ECBD_2731ECBD_1349ECBD_1352
ECOL439855 ECSMS35_2464ECSMS35_2465ECSMS35_0888ECSMS35_0891ECSMS35_2466ECSMS35_2463
ECOL413997 ECB_02233ECB_02234ECB_00865ECB_00868ECB_02235ECB_02232
ECOL409438 ECSE_2617ECSE_2618ECSE_0918ECSE_0921ECSE_2619ECSE_2616
ECOL405955 APECO1_4256APECO1_4255APECO1_1233APECO1_1230APECO1_4254APECO1_4257
ECOL364106 UTI89_C2592UTI89_C2593UTI89_C0863UTI89_C0866UTI89_C2594UTI89_C2591
ECOL362663 ECP_2347ECP_2348ECP_0878ECP_0878ECP_2349ECP_2346
ECOL331111 ECE24377A_2602ECE24377A_2603ECE24377A_0932ECE24377A_0936ECE24377A_2604ECE24377A_2601
ECOL316407 ECK2302:JW2305:B2308ECK2303:JW2306:B2309ECK0851:JW0844:B0860ECK0854:JW0847:B0863ECK2304:JW2307:B2310ECK2301:JW2304:B2307
ECOL199310 C2850C2851C0993C0996C2851C2849
ECAR218491 ECA3049ECA3050ECA2671ECA2668ECA3050ECA3048
CVIO243365 CV_0853CV_0852CV_3085CV_3085CV_0852CV_0854
CSAL290398 CSAL_2782CSAL_0534CSAL_2793CSAL_2793CSAL_2793CSAL_2783
CBUR434922 COXBU7E912_1593COXBU7E912_1594COXBU7E912_1594COXBU7E912_1594COXBU7E912_1592
CBUR360115 COXBURSA331_A0592COXBURSA331_A0591COXBURSA331_A0591COXBURSA331_A0591COXBURSA331_A0593
CBUR227377 CBU_0483CBU_0482CBU_0482CBU_0482CBU_0484
BXEN266265 BXE_B1828BXE_B2189BXE_B2189BXE_B2189BXE_B2189BXE_B1827
BVIE269482 BCEP1808_6665BCEP1808_4219BCEP1808_3624BCEP1808_3624BCEP1808_2492BCEP1808_2494
BTRI382640 BT_0926BT_0928BT_0928BT_0927BT_0928BT_0925
BTHA271848 BTH_I0889BTH_II2131BTH_I0890BTH_II2131BTH_I0890BTH_I0888
BSUI470137 BSUIS_A0993BSUIS_B0627BSUIS_A0900BSUIS_A0900BSUIS_B0628BSUIS_A0992
BSUI204722 BR_0953BR_A0631BR_0955BR_A0631BR_A0632BR_0952
BSP36773 BCEP18194_A4287BCEP18194_B2254BCEP18194_B2378BCEP18194_B0228BCEP18194_A5731BCEP18194_A5733
BQUI283165 BQ06870BQ06860BQ06860BQ06860BQ06880
BPSE320373 BURPS668_1089BURPS668_1090BURPS668_1090BURPS668_1090BURPS668_1090BURPS668_1088
BPSE320372 BURPS1710B_A1303BURPS1710B_A1304BURPS1710B_A1304BURPS1710B_A1304BURPS1710B_A1304BURPS1710B_A1302
BPSE272560 BPSL1032BPSL1033BPSL1033BPSL1033BPSL1033BPSL1031
BOVI236 GBOORFA0644GBOORF0885GBOORF0885GBOORFA0645GBOORFA0697
BMEL359391 BAB2_0612BAB1_0881BAB1_0881BAB2_0611BAB2_0557
BMEL224914 BMEI1104BMEI1104BMEI1104BMEI1104BMEII0600
BMAL320389 BMA10247_1580BMA10247_1579BMA10247_1579BMA10247_1579BMA10247_1579BMA10247_1581
BMAL320388 BMASAVP1_A0987BMASAVP1_A0988BMASAVP1_A0988BMASAVP1_A0988BMASAVP1_A0988BMASAVP1_A0986
BMAL243160 BMA_0746BMA_0747BMA_0747BMA_0747BMA_0747BMA_0745
BHEN283166 BH06360BH06370BH06370BH06370BH06370BH06350
BCEN331272 BCEN2424_2405BCEN2424_3842BCEN2424_5424BCEN2424_5424BCEN2424_2404BCEN2424_2406
BCEN331271 BCEN_1793BCEN_4522BCEN_5438BCEN_5438BCEN_1792BCEN_1794
BCAN483179 BCAN_A0965BCAN_B0631BCAN_A0967BCAN_B0631BCAN_B0632BCAN_A0964
BAMB398577 BAMMC406_2315BAMMC406_3739BAMMC406_5308BAMMC406_5308BAMMC406_2314BAMMC406_2316
BAMB339670 BAMB_2450BAMB_5565BAMB_5463BAMB_4765BAMB_2449BAMB_2451
BABO262698 BRUAB2_0595BRUAB1_0874BRUAB1_0874BRUAB2_0594BRUAB2_0546
ASAL382245 ASA_2675ASA_2676ASA_0656ASA_0656ASA_2676ASA_2674
AHYD196024 AHA_1686AHA_1685AHA_0656AHA_0656AHA_1685AHA_1687


Organism features enriched in list (features available for 113 out of the 118 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0001460692
Arrangment:Pairs 0.009970430112
Arrangment:Singles 0.002619468286
Disease:Brucellosis 0.000254455
Disease:Bubonic_plague 0.000047566
Disease:Dysentery 0.000047566
Disease:Gastroenteritis 8.462e-61013
Disease:Glanders_and_pneumonia 0.007126133
Disease:Melioidosis 0.007126133
Disease:Opportunistic_infections 0.000254455
Disease:chronic_bronchitis 0.007126133
Endospores:No 0.000369826211
GC_Content_Range4:0-40 2.194e-167213
GC_Content_Range4:40-60 2.994e-971224
GC_Content_Range7:30-40 9.513e-117166
GC_Content_Range7:50-60 1.739e-1046107
GC_Content_Range7:60-70 0.008449935134
Genome_Size_Range5:0-2 2.342e-115155
Genome_Size_Range5:2-4 9.221e-914197
Genome_Size_Range5:4-6 1.403e-1268184
Genome_Size_Range5:6-10 7.616e-92647
Genome_Size_Range9:1-2 1.716e-85128
Genome_Size_Range9:2-3 6.131e-76120
Genome_Size_Range9:4-5 7.700e-73796
Genome_Size_Range9:5-6 0.00006553188
Genome_Size_Range9:6-8 7.596e-102438
Gram_Stain:Gram_Neg 7.140e-23107333
Habitat:Aquatic 0.0042141991
Habitat:Multiple 0.000106951178
Habitat:Specialized 0.0005945253
Motility:No 1.063e-79151
Motility:Yes 9.915e-672267
Oxygen_Req:Anaerobic 1.178e-82102
Oxygen_Req:Facultative 1.059e-967201
Pathogenic_in:Animal 0.00076822366
Pathogenic_in:Human 7.513e-866213
Pathogenic_in:No 6.154e-624226
Shape:Coccobacillus 0.0012866711
Shape:Coccus 1.272e-6282
Shape:Rod 1.859e-1197347
Shape:Spiral 0.0045464134
Temp._range:Mesophilic 0.0002490104473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 435
Effective number of orgs (counting one per cluster within 468 clusters): 340

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)1
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K161
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145790
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG12125   EG12124   EG11628   EG11625   EG10072   EG10007   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068
TSP1755 TETH514_0469
TROS309801
TPSE340099 TETH39_1765
TPEN368408
TPAL243276
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159 STER_0214
STHE299768 STR0159
STHE292459 STH2622
STHE264199 STU0159
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148 SLL1270
SSP1131
SSOL273057
SSED425104
SSAP342451 SSP0243
SRUB309807
SPYO370554 MGAS10750_SPY0231
SPYO370553 MGAS2096_SPY0254
SPYO370552 MGAS10270_SPY0236
SPYO370551 MGAS9429_SPY0238
SPYO319701 M28_SPY0230
SPYO293653 M5005_SPY0236
SPYO286636 M6_SPY0268
SPYO198466 SPYM3_0203
SPYO193567 SPS0209
SPYO186103 SPYM18_0264
SPYO160490 SPY0277
SPNE488221 SP70585_0523
SPNE487214 SPH_0560
SPNE487213 SPT_0490
SPNE171101 SPR0409
SPNE170187 SPN06080
SPNE1313 SPJ_0437
SPEA398579 SPEA_3398
SONE211586
SMUT210007
SMAR399550
SLOI323850
SHAL458817
SFUM335543 SFUM_3951
SERY405948
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO SCO5259
SBAL402882
SBAL399599
SAVE227882 SAV2983
SAUR93062 SACOL2411
SAUR93061 SAOUHSC_02698
SAUR426430 NWMN_2312
SAUR418127
SAUR367830 SAUSA300_2358
SAUR359787 SAURJH1_2486
SAUR359786 SAURJH9_2438
SAUR282459 SAS2304
SAUR273036 SAB2293C
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110 GBS0132
SAGA208435 SAG_0136
SAGA205921 SAK_0194
SACI56780
SACI330779
RXYL266117 RXYL_0500
RTYP257363
RSP101510 RHA1_RO00802
RSOL267608
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_0887
RPAL316057 RPD_0999
RPAL316056 RPC_0729
RPAL316055 RPE_0737
RPAL258594 RPA4686
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP312153
PSP296591 BPRO_3132
PSP117
PRUM264731
PPEN278197
PNAP365044
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCAR338963
PATL342610
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
OCAR504832
NWIN323098 NWI_0150
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780 NP1780A
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_0202
NGON242231
NFAR247156 NFA18900
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058 MVAN_2833
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_1127
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_0959
MSP189918 MKMS_3092
MSP164757 MJLS_3049
MSP164756 MMCS_3033
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1940
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0030
MGIL350054 MFLV_3582
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007 MAB_4238C
LXYL281090
LWEL386043
LSAK314315
LPNE400673
LPNE297246
LPNE297245 LPL1471
LPNE272624 LPG1555
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956 LBUL_0263
LCHO395495
LCAS321967 LSEI_1260
LBRE387344 LVIS_1245
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
JSP375286
ILOI283942
IHOS453591
HWAL362976 HQ2731A
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914 HMUK_1689
HMOD498761 HM1_1261
HMAR272569
HHEP235279
HHAL349124
HBUT415426
HAUR316274 HAUR_2759
HARS204773
HACI382638
GVIO251221
GURA351605
GTHE420246
GOXY290633
GMET269799
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374 FSU3072
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304 FN1187
FMAG334413
FJOH376686
FALN326424 FRAAL5987
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_0247
ECHA205920
ECAN269484
DOLE96561
DNOD246195
DGEO319795 DGEO_1061
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847 KCR_0292
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK0807
CJAP155077
CHYD246194 CHY_0505
CHUT269798
CHOM360107
CGLU196627 CG1503
CFEL264202
CEFF196164 CE1444
CDIP257309 DIP1143
CDIF272563 CD1775
CDES477974
CCHL340177
CCAV227941
CBOT536232 CLM_1331
CBOT508765
CBOT498213 CLD_3389
CBOT441772 CLI_1262
CBOT441771 CLC_1223
CBOT441770 CLB_1211
CBOT36826 CBO1180
CBLO291272
CBLO203907
CBEI290402
CAULO CC1440
CABO218497
BWEI315730
BTUR314724
BTHU412694
BTHU281309
BTHE226186
BSUB
BSP376 BRADO6746
BSP107806
BPUM315750
BLON206672
BLIC279010
BHER314723
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692 ABC2931
BCER572264
BCER405917 BCE_A0209
BCER315749
BCER288681 BCE33L0339
BCER226900
BBUR224326
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721 AJS_0744
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAVE397945 AAVE_1011
AAUR290340 AAUR_3735
AAEO224324


Organism features enriched in list (features available for 409 out of the 435 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.005121568112
Disease:gastroenteritis 3.537e-6113
Endospores:No 0.0004138165211
Endospores:Yes 0.00196854653
GC_Content_Range4:0-40 1.617e-10182213
GC_Content_Range4:40-60 0.0000360136224
GC_Content_Range4:60-100 0.004328390145
GC_Content_Range7:0-30 0.00022384347
GC_Content_Range7:30-40 1.538e-6139166
GC_Content_Range7:50-60 0.000019957107
GC_Content_Range7:60-70 0.000550879134
Genome_Size_Range5:0-2 3.704e-8134155
Genome_Size_Range5:2-4 5.709e-7163197
Genome_Size_Range5:4-6 4.612e-1195184
Genome_Size_Range5:6-10 3.941e-71747
Genome_Size_Range9:0-1 0.00005352727
Genome_Size_Range9:1-2 0.0000468107128
Genome_Size_Range9:2-3 0.0000167102120
Genome_Size_Range9:4-5 2.035e-94296
Genome_Size_Range9:5-6 0.00925585388
Genome_Size_Range9:6-8 5.766e-81138
Gram_Stain:Gram_Neg 7.448e-19187333
Gram_Stain:Gram_Pos 6.726e-12136150
Habitat:Multiple 0.0020238111178
Motility:No 2.502e-11136151
Motility:Yes 6.685e-9156267
Oxygen_Req:Aerobic 0.0070906141185
Oxygen_Req:Facultative 4.815e-7115201
Pathogenic_in:Animal 0.00384203766
Pathogenic_in:Human 0.0003785132213
Pathogenic_in:No 0.0076735170226
Shape:Coccobacillus 0.0004521211
Shape:Coccus 5.745e-77582
Shape:Rod 1.835e-13205347
Shape:Sphere 0.00884181819
Shape:Spiral 0.00767543034
Temp._range:Mesophilic 0.0066332322473
Temp._range:Thermophilic 0.00598243135



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BHEN283166 ncbi Bartonella henselae Houston-1 0.00870127846
BTRI382640 ncbi Bartonella tribocorum CIP 105476 0.00924957926


Names of the homologs of the genes in the group in each of these orgs
  EG12125   EG12124   EG11628   EG11625   EG10072   EG10007   
BHEN283166 BH06360BH06370BH06370BH06370BH06370BH06350
BTRI382640 BT_0926BT_0928BT_0928BT_0927BT_0928BT_0925


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Bacillary_angiomatosis 0.006849312
Disease:Bartinellosis 0.003430511
Disease:Cat_scratch_fever 0.003430511
Pathogenic_in:Rat 0.003430511



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73650.6518
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195990.5483
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176930.5429
AST-PWY (arginine degradation II (AST pathway))120740.5326
PWY-46 (putrescine biosynthesis III)138800.5313
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112710.5311
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149810.5068
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96620.4972
ECASYN-PWY (enterobacterial common antigen biosynthesis)191920.4960
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218970.4785
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156800.4771
GALACTCAT-PWY (D-galactonate degradation)104630.4757
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491040.4753
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491040.4753
GLYCOCAT-PWY (glycogen degradation I)2461030.4727
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)225980.4723
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001140.4688
PWY-5148 (acyl-CoA hydrolysis)227980.4682
GLUCONSUPER-PWY (D-gluconate degradation)229980.4641
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901100.4523
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961110.4506
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91560.4496
XYLCAT-PWY (xylose degradation I)217930.4462
PWY0-981 (taurine degradation IV)106610.4461
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50390.4452
GLUTDEG-PWY (glutamate degradation II)194870.4446
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911090.4424
GLUCARDEG-PWY (D-glucarate degradation I)152750.4408
PWY-1269 (CMP-KDO biosynthesis I)3251150.4383
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861070.4343
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138700.4327
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135690.4318
PWY-6374 (vibriobactin biosynthesis)77490.4284
PWY-5913 (TCA cycle variation IV)3011090.4262
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212890.4223
PWY-6196 (serine racemization)102570.4172
PWY-5918 (heme biosynthesis I)2721020.4170
GLUTAMINDEG-PWY (glutamine degradation I)191830.4160
KDOSYN-PWY (KDO transfer to lipid IVA I)180800.4149
PWY0-1182 (trehalose degradation II (trehalase))70450.4117
PWY-1501 (mandelate degradation I)73460.4098
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)179790.4082
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481150.4050
PWY-4041 (γ-glutamyl cycle)2791020.4049
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.4032
PWY-3162 (tryptophan degradation V (side chain pathway))94530.4028
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391130.4013



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12124   EG11628   EG11625   EG10072   EG10007   
EG121250.9995470.9990340.9990860.9995210.999808
EG121240.9988890.9989820.9996130.999405
EG116280.9996440.9988570.998996
EG116250.9991610.998962
EG100720.999412
EG10007



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PAIRWISE BLAST SCORES:

  EG12125   EG12124   EG11628   EG11625   EG10072   EG10007   
EG121250.0f0-----
EG12124-0.0f02.4e-405.9e-373.1e-88-
EG11628-8.4e-380.0f01.9e-792.6e-34-
EG11625-2.2e-399.6e-850.0f09.7e-37-
EG10072-1.2e-932.9e-379.7e-370.0f0-
EG10007-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-14-CPLX (histidine ABC transporter) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9989 EG12124 (hisJ) HISJ-MONOMER (HisJ)
   *in cand* 0.9995 0.9990 EG12125 (hisQ) HISQ-MONOMER (HisQ)
   *in cand* 0.9994 0.9990 EG10007 (hisM) HISM-MONOMER (HisM)
             0.9991 0.9980 EG10452 (hisP) HISP-MONOMER (HisP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG10072 (argT) ARGT-MONOMER (ArgT)
   *in cand* 0.9993 0.9990 EG11625 (artI) ARTI-MONOMER (ArtI)
   *in cand* 0.9992 0.9989 EG11628 (artJ) ARTJ-MONOMER (ArtJ)

- ABC-3-CPLX (lysine/arginine/ornithine ABC Transporter) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9989 EG10072 (argT) ARGT-MONOMER (ArgT)
   *in cand* 0.9994 0.9990 EG10007 (hisM) HISM-MONOMER (HisM)
             0.9991 0.9980 EG10452 (hisP) HISP-MONOMER (HisP)
   *in cand* 0.9995 0.9990 EG12125 (hisQ) HISQ-MONOMER (HisQ)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9990 EG11625 (artI) ARTI-MONOMER (ArtI)
   *in cand* 0.9992 0.9989 EG11628 (artJ) ARTJ-MONOMER (ArtJ)
   *in cand* 0.9994 0.9989 EG12124 (hisJ) HISJ-MONOMER (HisJ)

- ABC-4-CPLX (arginine ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9992 0.9989 EG11628 (artJ) ARTJ-MONOMER (ArtJ)
   *in cand* 0.9993 0.9990 EG11625 (artI) ARTI-MONOMER (ArtI)
             0.9992 0.9984 EG11626 (artQ) ARTQ-MONOMER (ArtQ)
             0.9990 0.9978 EG11627 (artM) ARTM-MONOMER (ArtM)
             0.9988 0.9979 EG11624 (artP) ARTP-MONOMER (ArtP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9990 EG10007 (hisM) HISM-MONOMER (HisM)
   *in cand* 0.9994 0.9989 EG10072 (argT) ARGT-MONOMER (ArgT)
   *in cand* 0.9994 0.9989 EG12124 (hisJ) HISJ-MONOMER (HisJ)
   *in cand* 0.9995 0.9990 EG12125 (hisQ) HISQ-MONOMER (HisQ)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10007 EG10072 EG12124 EG12125 (centered at EG12124)
EG11625 (centered at EG11625)
EG11628 (centered at EG11628)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12125   EG12124   EG11628   EG11625   EG10072   EG10007   
224/623123/623145/623143/623118/623216/623
AAUR290340:2:Tyes-----0
AAVE397945:0:Tyes0-----
ACRY349163:8:Tyes0----0
AHYD196024:0:Tyes100810070010071009
AMET293826:0:Tyes0----0
APLE416269:0:Tyes1-22-0
APLE434271:0:Tno1-22-0
ASAL382245:5:Tyes194019410019411939
ASP232721:2:Tyes0-----
BABO262698:0:Tno-45--440
BABO262698:1:Tno--00--
BAMB339670:2:Tno-7976950--
BAMB339670:3:Tno1---02
BAMB398577:2:Tno-015541554--
BAMB398577:3:Tno1---02
BBAC360095:0:Tyes12--20
BBRO257310:0:Tyes1094-1232--0
BCAN483179:0:Tno-0-01-
BCAN483179:1:Tno1-3--0
BCEN331271:1:Tno-0909909--
BCEN331271:2:Tno1---02
BCEN331272:2:Tyes-015781578--
BCEN331272:3:Tyes1---02
BCER288681:0:Tno--0---
BCER405917:0:Tyes0-----
BCIC186490:0:Tyes110-109109-0
BCLA66692:0:Tyes-----0
BHEN283166:0:Tyes122220
BJAP224911:0:Fyes6112--0--
BMAL243160:1:Tno122220
BMAL320388:1:Tno122220
BMAL320389:1:Tyes100002
BMEL224914:0:Tno-----0
BMEL224914:1:Tno-0000-
BMEL359391:0:Tno-47--460
BMEL359391:1:Tno--00--
BOVI236:0:Tyes-0--137
BOVI236:1:Tyes--00--
BPAR257311:0:Tno209----0
BPER257313:0:Tyes0-442--156
BPET94624:0:Tyes0----0
BPSE272560:1:Tyes122220
BPSE320372:1:Tno122220
BPSE320373:1:Tno122220
BQUI283165:0:Tyes10-002
BSP36773:1:Tyes-202621500--
BSP36773:2:Tyes0---14711473
BSP376:0:Tyes---0--
BSUI204722:0:Tyes-0-01-
BSUI204722:1:Tyes1-3--0
BSUI470137:0:Tno-0--1-
BSUI470137:1:Tno90-00-89
BTHA271848:0:Tno-0-0--
BTHA271848:1:Tno1-2-20
BTRI382640:1:Tyes133230
BVIE269482:4:Tyes0-----
BVIE269482:6:Tyes-59000--
BVIE269482:7:Tyes----02
BXEN266265:1:Tyes3450000346
CACE272562:1:Tyes293----0
CAULO:0:Tyes-----0
CBOT36826:1:Tno-----0
CBOT441770:0:Tyes-----0
CBOT441771:0:Tno-----0
CBOT441772:1:Tno-----0
CBOT498213:1:Tno-----0
CBOT515621:2:Tyes983----0
CBOT536232:0:Tno-----0
CBUR227377:1:Tyes1000-2
CBUR360115:1:Tno1000-2
CBUR434922:2:Tno1222-0
CCON360104:2:Tyes0--1199-0
CCUR360105:0:Tyes0----0
CDIF272563:1:Tyes0-----
CDIP257309:0:Tyes-----0
CEFF196164:0:Fyes-----0
CFET360106:0:Tyes--00--
CGLU196627:0:Tyes-----0
CHYD246194:0:Tyes0-----
CJEI306537:0:Tyes-----0
CKLU431943:1:Tyes0----0
CKOR374847:0:Tyes-----0
CNOV386415:0:Tyes0----0
CPEL335992:0:Tyes1----0
CSAL290398:0:Tyes228802298229822982289
CSP501479:6:Fyes0----1
CTET212717:0:Tyes20---2
CVIO243365:0:Tyes102285228502
DDES207559:0:Tyes1218----0
DETH243164:0:Tyes0----0
DGEO319795:1:Tyes-----0
DHAF138119:0:Tyes1490----0
DPSY177439:2:Tyes0----0
DRAD243230:3:Tyes100--1
DRED349161:0:Tyes650--0--
DSHI398580:5:Tyes0----1
DSP216389:0:Tyes0----0
DSP255470:0:Tno0----0
DVUL882:1:Tyes577----0
ECAR218491:0:Tyes38638730387385
ECOL199310:0:Tno181318140318141812
ECOL316407:0:Tno146914700314711468
ECOL331111:6:Tno160816090316101607
ECOL362663:0:Tno146414650014661463
ECOL364106:1:Tno172817290317301727
ECOL405955:2:Tyes148614870314881485
ECOL409438:6:Tyes171617170317181715
ECOL413997:0:Tno135813590313601357
ECOL439855:4:Tno154715480315491546
ECOL469008:0:Tno211360135703
ECOL481805:0:Tno211378137503
ECOL585034:0:Tno146314640314641462
ECOL585035:0:Tno150515060315071504
ECOL585055:0:Tno163016310316321629
ECOL585056:2:Tno159515960315971594
ECOL585057:0:Tno160016010316021599
ECOL585397:0:Tno187618770318781875
ECOL83334:0:Tno229022910322922289
ECOLI:0:Tno149114920314931490
ECOO157:0:Tno229722980322992296
EFAE226185:3:Tyes0-----
EFER585054:1:Tyes2114715003
ESP42895:1:Tyes148214830314841481
FALN326424:0:Tyes-----0
FNOD381764:0:Tyes--00-1
FNUC190304:0:Tyes--0---
FSUC59374:0:Tyes-----0
GSUL243231:0:Tyes2593----0
HAUR316274:2:Tyes0-----
HCHE349521:0:Tyes100002
HDUC233412:0:Tyes1-00-2
HINF281310:0:Tyes122220
HINF374930:0:Tyes100002
HINF71421:0:Tno122220
HMOD498761:0:Tyes---0--
HMUK485914:1:Tyes-----0
HSOM205914:1:Tyes1-00-2
HSOM228400:0:Tno1-00-2
HWAL362976:1:Tyes-----0
JSP290400:1:Tyes1----0
KPNE272620:2:Tyes123233323640
LBRE387344:2:Tyes0-----
LCAS321967:1:Tyes0-----
LDEL321956:0:Tyes-----0
LINT363253:3:Tyes0----586
LPLA220668:0:Tyes0----0
LPNE272624:0:Tno--0---
LPNE297245:1:Fno--0---
LREU557436:0:Tyes0----0
LSPH444177:1:Tyes4117----0
MABS561007:1:Tyes-----0
MAQU351348:2:Tyes1-00-2
MGIL350054:3:Tyes-----0
MHUN323259:0:Tyes-----0
MLOT266835:2:Tyes510036133986036135099
MMAR402880:1:Tyes-00---
MMAR426368:0:Tyes-00---
MMAR444158:0:Tyes-00---
MMAZ192952:0:Tyes0-----
MPET420662:1:Tyes100002
MSME246196:0:Tyes0----3039
MSP164756:1:Tno-----0
MSP164757:0:Tno-----0
MSP189918:2:Tyes-----0
MSP266779:3:Tyes100002
MSP400668:0:Tyes1-0002
MSP409:2:Tyes0----1
MSTA339860:0:Tyes-----0
MSUC221988:0:Tyes10504002
MTHE264732:0:Tyes0-----
MVAN350058:0:Tyes-----0
NFAR247156:2:Tyes-----0
NHAM323097:2:Tyes---0--
NPHA348780:2:Tyes-----0
NWIN323098:0:Tyes---0--
OANT439375:4:Tyes0--1911911
OANT439375:5:Tyes-00---
PAER208963:0:Tyes123418341820
PAER208964:0:Tno102266226602
PARC259536:0:Tyes2-0113
PCRY335284:1:Tyes2-1003
PENT384676:0:Tyes123159190519050
PFLU205922:0:Tyes908178101781664907
PFLU216595:1:Tyes133213321332133210
PFLU220664:0:Tyes9061868018681868905
PING357804:0:Tyes122220
PLUM243265:0:Fyes011112922
PMEN399739:0:Tyes1662136613666620
PMOB403833:0:Tyes2----0
PMUL272843:1:Tyes1-00-2
PPRO298386:1:Tyes----0-
PPRO298386:2:Tyes66266300-661
PPUT160488:0:Tno418941900041904188
PPUT351746:0:Tyes114911480114811481150
PPUT76869:0:Tno373237330373337333731
PSP296591:2:Tyes-----0
PSP56811:2:Tyes1-33-0
PSTU379731:0:Tyes100002
PSYR205918:0:Tyes3060000307
PSYR223283:2:Tyes227700002278
RCAS383372:0:Tyes0----0
RDEN375451:4:Tyes1----0
RETL347834:2:Tyes-0--0-
RETL347834:3:Tyes0----1
RETL347834:5:Tyes--00--
REUT264198:3:Tyes1013-0---
REUT381666:2:Tyes721-0--3179
RFER338969:1:Tyes122220
RLEG216596:3:Tyes10--0-
RLEG216596:4:Tyes-----0
RLEG216596:6:Tyes--00--
RPAL258594:0:Tyes---0--
RPAL316055:0:Tyes---0--
RPAL316056:0:Tyes---0--
RPAL316057:0:Tyes---0--
RPAL316058:0:Tyes---0--
RPOM246200:0:Tyes10--0-
RPOM246200:1:Tyes-----0
RRUB269796:1:Tyes100002
RSP101510:3:Fyes-----0
RSP357808:0:Tyes0----0
RSPH272943:4:Tyes0----1
RSPH349101:2:Tno0----1
RSPH349102:5:Tyes1----0
RXYL266117:0:Tyes-----0
SAGA205921:0:Tno0-----
SAGA208435:0:Tno0-----
SAGA211110:0:Tyes0-----
SAUR273036:0:Tno0-----
SAUR282458:0:Tno0----0
SAUR282459:0:Tno0-----
SAUR359786:1:Tno0-----
SAUR359787:1:Tno0-----
SAUR367830:3:Tno0-----
SAUR426430:0:Tno0-----
SAUR93061:0:Fno0-----
SAUR93062:1:Tno0-----
SAVE227882:1:Fyes-----0
SBOY300268:1:Tyes146014610314621459
SCO:2:Fyes-----0
SDYS300267:1:Tyes98990010097
SENT209261:0:Tno211424142103
SENT220341:0:Tno149314940314951492
SENT295319:0:Tno211306130303
SENT321314:2:Tno149214930314941491
SENT454169:2:Tno152515260315271524
SFLE198214:0:Tyes147514760314771474
SFLE373384:0:Tno144314440314451442
SFUM335543:0:Tyes0-----
SGLO343509:3:Tyes122220
SGOR29390:0:Tyes1119----0
SHAE279808:0:Tyes0----0
SHIGELLA:0:Tno142314240314251422
SLAC55218:1:Fyes1----0
SMED366394:2:Tyes---0--
SMED366394:3:Tyes011396-11398
SMEL266834:0:Tyes-----0
SMEL266834:1:Tyes---0--
SMEL266834:2:Tyes011336-1-
SPEA398579:0:Tno0-----
SPNE1313:0:Tyes0-----
SPNE170187:0:Tyes0-----
SPNE171101:0:Tno0-----
SPNE487213:0:Tno0-----
SPNE487214:0:Tno0-----
SPNE488221:0:Tno0-----
SPRO399741:1:Tyes168716880316881686
SPYO160490:0:Tno0-----
SPYO186103:0:Tno0-----
SPYO193567:0:Tno0-----
SPYO198466:0:Tno0-----
SPYO286636:0:Tno0-----
SPYO293653:0:Tno0-----
SPYO319701:0:Tyes0-----
SPYO370551:0:Tno0-----
SPYO370552:0:Tno0-----
SPYO370553:0:Tno0-----
SPYO370554:0:Tyes0-----
SSAP342451:2:Tyes0-----
SSON300269:1:Tyes144414450314461443
SSP1148:0:Tyes0-----
SSP292414:2:Tyes0----1
SSP644076:3:Fyes0----1
STHE264199:0:Tyes0-----
STHE292459:0:Tyes0-----
STHE299768:0:Tno0-----
STHE322159:2:Tyes0-----
STYP99287:1:Tyes145414550314561453
TLET416591:0:Tyes0----2
TMAR243274:0:Tyes--11-0
TPET390874:0:Tno--0--1
TPSE340099:0:Tyes--0---
TSP1755:0:Tyes0-----
TSP28240:0:Tyes--0--1
VCHO:0:Tyes12--20
VCHO:1:Fyes--00--
VCHO345073:0:Tno--00--
VCHO345073:1:Tno12--20
VEIS391735:1:Tyes157701579157901578
VFIS312309:2:Tyes122220
VPAR223926:0:Tyes--00--
VPAR223926:1:Tyes10--02
VVUL196600:1:Tyes--00--
VVUL196600:2:Tyes12--20
VVUL216895:0:Tno--00--
VVUL216895:1:Tno10--02
YENT393305:1:Tyes1016316602
YPES187410:5:Tno101232121802
YPES214092:3:Tno136713660013661368
YPES349746:2:Tno121176118820
YPES360102:3:Tyes1457145801114581456
YPES377628:2:Tno1248147020
YPES386656:2:Tno1237536320
YPSE273123:2:Tno1239124001012401238
YPSE349747:2:Tno101199118602



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