CANDIDATE ID: 507

CANDIDATE ID: 507

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9928180e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.6666667e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12125 (hisQ) (b2308)
   Products of gene:
     - HISQ-MONOMER (HisQ)
     - ABC-3-CPLX (lysine/arginine/ornithine ABC Transporter)
       Reactions:
        ATP + L-ornithine[periplasmic space] + H2O  ->  ADP + phosphate + L-ornithine[cytosol]
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]
        L-lysine[periplasmic space] + ATP + H2O  ->  L-lysine[cytosol] + ADP + phosphate
     - ABC-14-CPLX (histidine ABC transporter)
       Reactions:
        ATP + L-histidine[periplasmic space] + H2O  ->  ADP + phosphate + L-histidine[cytosol]

- EG11628 (artJ) (b0860)
   Products of gene:
     - ARTJ-MONOMER (ArtJ)
     - ABC-4-CPLX (arginine ABC transporter)
       Reactions:
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]

- EG11626 (artQ) (b0862)
   Products of gene:
     - ARTQ-MONOMER (ArtQ)
     - ABC-4-CPLX (arginine ABC transporter)
       Reactions:
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]

- EG11625 (artI) (b0863)
   Products of gene:
     - ARTI-MONOMER (ArtI)
     - ABC-4-CPLX (arginine ABC transporter)
       Reactions:
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]

- EG10072 (argT) (b2310)
   Products of gene:
     - ARGT-MONOMER (ArgT)
     - ABC-3-CPLX (lysine/arginine/ornithine ABC Transporter)
       Reactions:
        ATP + L-ornithine[periplasmic space] + H2O  ->  ADP + phosphate + L-ornithine[cytosol]
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]
        L-lysine[periplasmic space] + ATP + H2O  ->  L-lysine[cytosol] + ADP + phosphate

- EG10007 (hisM) (b2307)
   Products of gene:
     - HISM-MONOMER (HisM)
     - ABC-3-CPLX (lysine/arginine/ornithine ABC Transporter)
       Reactions:
        ATP + L-ornithine[periplasmic space] + H2O  ->  ADP + phosphate + L-ornithine[cytosol]
        ATP + L-arginine[periplasmic space] + H2O  ->  ADP + phosphate + L-arginine[cytosol]
        L-lysine[periplasmic space] + ATP + H2O  ->  L-lysine[cytosol] + ADP + phosphate
     - ABC-14-CPLX (histidine ABC transporter)
       Reactions:
        ATP + L-histidine[periplasmic space] + H2O  ->  ADP + phosphate + L-histidine[cytosol]



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 123
Effective number of orgs (counting one per cluster within 468 clusters): 72

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSON300269 ncbi Shigella sonnei Ss0466
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SBOY300268 ncbi Shigella boydii Sb2276
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1186
RETL347834 ncbi Rhizobium etli CFN 426
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.5
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM16
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
MAQU351348 ncbi Marinobacter aquaeolei VT85
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23966
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
BXEN266265 ncbi Burkholderia xenovorans LB4006
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTRI382640 ncbi Bartonella tribocorum CIP 1054766
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUI470137 ncbi Brucella suis ATCC 234456
BSUI204722 ncbi Brucella suis 13306
BSP36773 Burkholderia sp.6
BQUI283165 ncbi Bartonella quintana Toulouse5
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BHEN283166 ncbi Bartonella henselae Houston-16
BCIC186490 Candidatus Baumannia cicadellinicola5
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BCAN483179 ncbi Brucella canis ATCC 233656
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis6


Names of the homologs of the genes in the group in each of these orgs
  EG12125   EG11628   EG11626   EG11625   EG10072   EG10007   
YPSE349747 YPSIP31758_1429YPSIP31758_2639YPSIP31758_2627YPSIP31758_2626YPSIP31758_1428YPSIP31758_1430
YPSE273123 YPTB2609YPTB1367YPTB1376YPTB1377YPTB2610YPTB2608
YPES386656 YPDSF_1986YPDSF_2359YPDSF_2348YPDSF_2347YPDSF_1987YPDSF_1985
YPES377628 YPN_2172YPN_2643YPN_2633YPN_2632YPN_2173YPN_2171
YPES360102 YPA_2067YPA_0627YPA_0637YPA_0638YPA_2068YPA_2066
YPES349746 YPANGOLA_A0352YPANGOLA_A1569YPANGOLA_A1581YPANGOLA_A1582YPANGOLA_A0353YPANGOLA_A0351
YPES214092 YPO2775YPO1351YPO1350YPO1351YPO2774YPO2776
YPES187410 Y1608Y2844Y2831Y2830Y1607Y1609
YENT393305 YE1319YE1491YE1494YE1495YE1318YE1320
VVUL216895 VV1_2103VV2_0816VV2_0817VV2_0816VV1_2102VV1_2104
VVUL196600 VV2337VVA1280VVA1282VVA1280VV2338VV2336
VPAR223926 VP1000VPA0637VPA0638VPA0637VP0999VP1001
VFIS312309 VF1586VF1587VF1586VF1587VF1587VF1585
VEIS391735 VEIS_1926VEIS_1928VEIS_0336VEIS_1928VEIS_0335VEIS_1927
VCHO345073 VC0395_A1453VC0395_0700VC0395_0699VC0395_0700VC0395_A1454VC0395_A1452
VCHO VC1862VCA0759VCA0758VCA0759VC1863VC1861
STYP99287 STM2353STM0887STM0889STM0890STM2355STM2352
SSON300269 SSO_2366SSO_0845SSO_0847SSO_0848SSO_2368SSO_2365
SPRO399741 SPRO_3325SPRO_1652SPRO_1654SPRO_1655SPRO_3326SPRO_3324
SMEL266834 SMC02258SMC00140SMC00139SMB20706SMC02259SMA0492
SMED366394 SMED_0174SMED_1588SMED_1589SMED_4274SMED_0175SMED_1590
SHIGELLA HISQARTJARTQARTIARGTHISM
SGLO343509 SG1094SG1095SG1094SG1095SG1095SG1093
SFLE373384 SFV_2375SFV_0845SFV_0847SFV_0848SFV_2377SFV_2374
SFLE198214 AAN43897.1AAN42447.1AAN42449.1AAN42450.1AAN43899.1AAN43896.1
SENT454169 SEHA_C2594SEHA_C1022SEHA_C1024SEHA_C1025SEHA_C2596SEHA_C2593
SENT321314 SCH_2354SCH_0879SCH_0881SCH_0882SCH_2356SCH_2353
SENT295319 SPA0511SPA1875SPA1873SPA1872SPA0509SPA0512
SENT220341 STY2583STY0920STY0922STY0923STY2585STY2582
SENT209261 T0511T2009T2007T2006T0509T0512
SDYS300267 SDY_2507SDY_2405SDY_2406SDY_2405SDY_2509SDY_2506
SBOY300268 SBO_2345SBO_0794SBO_0796SBO_0797SBO_2347SBO_2344
RRUB269796 RRU_A2252RRU_A2251RRU_A2252RRU_A2251RRU_A2251RRU_A2253
RLEG216596 PRL100411RL2753RL2754RL2753PRL100410PRL110213
RFER338969 RFER_1524RFER_1525RFER_1524RFER_1525RFER_1525RFER_1523
RETL347834 RHE_PE00078RHE_CH02418RHE_CH02419RHE_CH02418RHE_PC00160RHE_PE00079
PSYR223283 PSPTO_4137PSPTO_1826PSPTO_5359PSPTO_1826PSPTO_1826PSPTO_4138
PSYR205918 PSYR_3875PSYR_3571PSYR_4913PSYR_3571PSYR_3571PSYR_3876
PSTU379731 PST_4105PST_4104PST_4105PST_4104PST_4104PST_4106
PSP56811 PSYCPRWF_2073PSYCPRWF_2075PSYCPRWF_2073PSYCPRWF_2075PSYCPRWF_2072
PPUT76869 PPUTGB1_3990PPUTGB1_0305PPUTGB1_0304PPUTGB1_3991PPUTGB1_3991PPUTGB1_3989
PPUT351746 PPUT_1430PPUT_0300PPUT_0299PPUT_1429PPUT_1429PPUT_1431
PPUT160488 PP_4485PP_0282PP_0281PP_0282PP_4486PP_4484
PPRO298386 PBPRA2740PBPRA2074PBPRA2075PBPRA2074PBPRB1128PBPRA2739
PMUL272843 PM0125PM0124PM0125PM0124PM0126
PMEN399739 PMEN_2915PMEN_4270PMEN_4271PMEN_4270PMEN_3578PMEN_2914
PLUM243265 PLU1586PLU1587PLU1586PLU1587PLU1587PLU4485
PING357804 PING_2832PING_2833PING_2832PING_2833PING_2833PING_2831
PFLU220664 PFL_1266PFL_0342PFL_0341PFL_2252PFL_2252PFL_1265
PFLU216595 PFLU1310PFLU4765PFLU0312PFLU4765PFLU4765PFLU1309
PFLU205922 PFL_1209PFL_0311PFL_0310PFL_2064PFL_0967PFL_1208
PENT384676 PSEEN1857PSEEN5208PSEEN5209PSEEN3887PSEEN3887PSEEN1856
PCRY335284 PCRYO_0328PCRYO_0327PCRYO_0328PCRYO_0326PCRYO_0326PCRYO_0329
PARC259536 PSYC_0297PSYC_0295PSYC_0297PSYC_0296PSYC_0296PSYC_0298
PAER208964 PA2924PA5153PA5154PA5153PA2923PA2925
PAER208963 PA14_26230PA14_68070PA14_68080PA14_68070PA14_26240PA14_26220
OANT439375 OANT_3519OANT_2214OANT_2236OANT_3710OANT_3710OANT_3520
MSUC221988 MS0221MS0704MS0221MS0220MS0220MS0222
MSP400668 MMWYL1_1114MMWYL1_1113MMWYL1_1114MMWYL1_1113MMWYL1_1113MMWYL1_1115
MSP266779 MESO_1563MESO_1562MESO_1563MESO_1562MESO_1562MESO_1564
MPET420662 MPE_A2880MPE_A2879MPE_A2880MPE_A2879MPE_A2879MPE_A2881
MLOT266835 MLL6986MLR5654MLL6986MLR0549MLL5202MLL6985
MAQU351348 MAQU_3309MAQU_3308MAQU_3309MAQU_3308MAQU_3310
KPNE272620 GKPORF_B2006GKPORF_B5331GKPORF_B5333GKPORF_B5334GKPORF_B2009GKPORF_B2005
HSOM228400 HSM_0126HSM_0125HSM_0126HSM_0125HSM_0127
HSOM205914 HS_0253HS_0252HS_0253HS_0252HS_0254
HINF71421 HI_1178HI_1179HI_1178HI_1179HI_1179HI_1177
HINF374930 CGSHIEE_06155CGSHIEE_06150CGSHIEE_06155CGSHIEE_06150CGSHIEE_06150CGSHIEE_06160
HINF281310 NTHI1346NTHI1347NTHI1346NTHI1347NTHI1347NTHI1345
HDUC233412 HD_0813HD_0812HD_0813HD_0812HD_0814
HCHE349521 HCH_05215HCH_05214HCH_05215HCH_05214HCH_05214HCH_05216
ESP42895 ENT638_2857ENT638_1376ENT638_1378ENT638_1379ENT638_2859ENT638_2856
EFER585054 EFER_0855EFER_1003EFER_1005EFER_1006EFER_0853EFER_0856
ECOO157 HISQARTJARTQARTIARGTHISM
ECOL83334 ECS3192ECS0943ECS0945ECS0946ECS3194ECS3191
ECOL585397 ECED1_2772ECED1_0825ECED1_0827ECED1_0828ECED1_2774ECED1_2771
ECOL585057 ECIAI39_2457ECIAI39_0840ECIAI39_0842ECIAI39_0843ECIAI39_2459ECIAI39_2456
ECOL585056 ECUMN_2648ECUMN_1053ECUMN_1055ECUMN_1056ECUMN_2650ECUMN_2647
ECOL585055 EC55989_2552EC55989_0905EC55989_0907EC55989_0908EC55989_2554EC55989_2551
ECOL585035 ECS88_2455ECS88_0877ECS88_0880ECS88_0881ECS88_2457ECS88_2454
ECOL585034 ECIAI1_2384ECIAI1_0899ECIAI1_0901ECIAI1_0902ECIAI1_2385ECIAI1_2383
ECOL481805 ECOLC_1344ECOLC_2736ECOLC_2734ECOLC_2733ECOLC_1342ECOLC_1345
ECOL469008 ECBD_1351ECBD_2734ECBD_2732ECBD_2731ECBD_1349ECBD_1352
ECOL439855 ECSMS35_2464ECSMS35_0888ECSMS35_0890ECSMS35_0891ECSMS35_2466ECSMS35_2463
ECOL413997 ECB_02233ECB_00865ECB_00867ECB_00868ECB_02235ECB_02232
ECOL409438 ECSE_2617ECSE_0918ECSE_0920ECSE_0921ECSE_2619ECSE_2616
ECOL405955 APECO1_4256APECO1_1233APECO1_1231APECO1_1230APECO1_4254APECO1_4257
ECOL364106 UTI89_C2592UTI89_C0863UTI89_C0865UTI89_C0866UTI89_C2594UTI89_C2591
ECOL362663 ECP_2347ECP_0878ECP_0877ECP_0878ECP_2349ECP_2346
ECOL331111 ECE24377A_2602ECE24377A_0932ECE24377A_0935ECE24377A_0936ECE24377A_2604ECE24377A_2601
ECOL316407 ECK2302:JW2305:B2308ECK0851:JW0844:B0860ECK0853:JW0846:B0862ECK0854:JW0847:B0863ECK2304:JW2307:B2310ECK2301:JW2304:B2307
ECOL199310 C2850C0993C0995C0996C2851C2849
ECAR218491 ECA3049ECA2671ECA2669ECA2668ECA3050ECA3048
CVIO243365 CV_0853CV_3085CV_3086CV_3085CV_0852CV_0854
CSAL290398 CSAL_2782CSAL_2793CSAL_2782CSAL_2793CSAL_2793CSAL_2783
CBUR434922 COXBU7E912_1593COXBU7E912_1594COXBU7E912_1593COXBU7E912_1594COXBU7E912_1592
CBUR360115 COXBURSA331_A0592COXBURSA331_A0591COXBURSA331_A0592COXBURSA331_A0591COXBURSA331_A0593
CBUR227377 CBU_0483CBU_0482CBU_0483CBU_0482CBU_0484
BXEN266265 BXE_B1828BXE_B2189BXE_B1828BXE_B2189BXE_B2189BXE_B1827
BVIE269482 BCEP1808_6665BCEP1808_3624BCEP1808_5570BCEP1808_3624BCEP1808_2492BCEP1808_2494
BTRI382640 BT_0926BT_0928BT_0926BT_0927BT_0928BT_0925
BTHA271848 BTH_I0889BTH_I0890BTH_II1410BTH_II2131BTH_I0890BTH_I0888
BSUI470137 BSUIS_A0993BSUIS_A0900BSUIS_A0993BSUIS_A0900BSUIS_B0628BSUIS_A0992
BSUI204722 BR_0953BR_0955BR_0953BR_A0631BR_A0632BR_0952
BSP36773 BCEP18194_A4287BCEP18194_B2378BCEP18194_A5732BCEP18194_B0228BCEP18194_A5731BCEP18194_A5733
BQUI283165 BQ06870BQ06870BQ06860BQ06860BQ06880
BPSE320373 BURPS668_1089BURPS668_1090BURPS668_A1440BURPS668_1090BURPS668_1090BURPS668_1088
BPSE320372 BURPS1710B_A1303BURPS1710B_A1304BURPS1710B_B3046BURPS1710B_A1304BURPS1710B_A1304BURPS1710B_A1302
BPSE272560 BPSL1032BPSL1033BPSS0981BPSL1033BPSL1033BPSL1031
BMAL320389 BMA10247_1580BMA10247_1579BMA10247_A1089BMA10247_1579BMA10247_1579BMA10247_1581
BMAL320388 BMASAVP1_A0987BMASAVP1_A0988BMASAVP1_0210BMASAVP1_A0988BMASAVP1_A0988BMASAVP1_A0986
BMAL243160 BMA_0746BMA_0747BMA_A1240BMA_0747BMA_0747BMA_0745
BHEN283166 BH06360BH06370BH06360BH06370BH06370BH06350
BCIC186490 BCI_0325BCI_0324BCI_0325BCI_0324BCI_0208
BCEN331272 BCEN2424_2405BCEN2424_5424BCEN2424_2405BCEN2424_5424BCEN2424_2404BCEN2424_2406
BCEN331271 BCEN_1793BCEN_5438BCEN_1793BCEN_5438BCEN_1792BCEN_1794
BCAN483179 BCAN_A0965BCAN_A0967BCAN_A0965BCAN_B0631BCAN_B0632BCAN_A0964
BAMB398577 BAMMC406_2315BAMMC406_5308BAMMC406_3607BAMMC406_5308BAMMC406_2314BAMMC406_2316
BAMB339670 BAMB_2450BAMB_5463BAMB_4285BAMB_4765BAMB_2449BAMB_2451
ASAL382245 ASA_2675ASA_0656ASA_0657ASA_0656ASA_2676ASA_2674
APLE434271 APJL_1370APJL_1371APJL_1370APJL_1371APJL_1369
APLE416269 APL_1352APL_1353APL_1352APL_1353APL_1351
AHYD196024 AHA_1686AHA_0656AHA_0657AHA_0656AHA_1685AHA_1687


Organism features enriched in list (features available for 117 out of the 123 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0008795892
Arrangment:Singles 0.001579171286
Disease:Bubonic_plague 0.000058866
Disease:Dysentery 0.000058866
Disease:Gastroenteritis 0.00001181013
Disease:Glanders_and_pneumonia 0.007917233
Disease:Melioidosis 0.007917233
Disease:Opportunistic_infections 0.000303755
Disease:chronic_bronchitis 0.007917233
Endospores:No 0.000137526211
GC_Content_Range4:0-40 2.392e-1410213
GC_Content_Range4:40-60 8.708e-972224
GC_Content_Range7:30-40 5.594e-910166
GC_Content_Range7:50-60 1.253e-844107
Genome_Size_Range5:0-2 5.275e-116155
Genome_Size_Range5:2-4 3.841e-816197
Genome_Size_Range5:4-6 3.693e-1269184
Genome_Size_Range5:6-10 1.758e-82647
Genome_Size_Range9:1-2 4.044e-86128
Genome_Size_Range9:2-3 0.000215711120
Genome_Size_Range9:3-4 0.0003419577
Genome_Size_Range9:4-5 6.414e-73896
Genome_Size_Range9:5-6 0.00013613188
Genome_Size_Range9:6-8 1.708e-92438
Gram_Stain:Gram_Neg 4.660e-24111333
Habitat:Aquatic 0.00621131091
Habitat:Multiple 0.000310351178
Habitat:Specialized 0.0004020253
Motility:No 3.468e-89151
Motility:Yes 0.000025373267
Oxygen_Req:Anaerobic 5.052e-83102
Oxygen_Req:Facultative 5.168e-1171201
Pathogenic_in:Animal 0.00018562566
Pathogenic_in:Human 1.728e-767213
Pathogenic_in:No 4.639e-625226
Shape:Coccobacillus 0.0001897811
Shape:Rod 1.414e-11100347
Shape:Spiral 0.0035147134
Temp._range:Mesophilic 0.0003887107473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 410
Effective number of orgs (counting one per cluster within 468 clusters): 328

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)1
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CABO218497 ncbi Chlamydophila abortus S26/31
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUB ncbi Bacillus subtilis subtilis 1681
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K161
BCER572264 ncbi Bacillus cereus 03BB1021
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG12125   EG11628   EG11626   EG11625   EG10072   EG10007   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068 TTE0513
TROS309801
TPEN368408
TPAL243276
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159 STER_0214
STHE299768 STR0159
STHE292459 STH2622
STHE264199 STU0159
SSUI391296 SSU98_1039
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148 SLL1270
SSP1131
SSOL273057
SSED425104
SSAP342451 SSP0243
SRUB309807
SPYO370554 MGAS10750_SPY0231
SPYO370553 MGAS2096_SPY0254
SPYO370552 MGAS10270_SPY0236
SPYO370551 MGAS9429_SPY0238
SPYO319701 M28_SPY0230
SPYO293653 M5005_SPY0236
SPYO286636 M6_SPY0268
SPYO198466 SPYM3_0203
SPYO193567 SPS0209
SPYO186103 SPYM18_0264
SPYO160490 SPY0277
SPEA398579 SPEA_3398
SONE211586
SMUT210007 SMU_806C
SMAR399550
SLOI323850
SHAL458817 SHAL_3485
SERY405948
SEPI176280 SE_1541
SEPI176279 SERP1395
SELO269084
SDEN318161
SDEG203122
SCO SCO5259
SBAL402882
SBAL399599
SAVE227882 SAV2983
SAUR418127 SAHV_1843
SAUR196620 MW1799
SAUR158879 SA1675
SAUR158878 SAV1858
SARE391037
SALA317655
SAGA211110 GBS0132
SAGA208435 SAG_0136
SAGA205921 SAK_0194
SACI56780
SACI330779
RXYL266117 RXYL_0500
RTYP257363
RSOL267608
RSAL288705 RSAL33209_0516
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_0887
RPAL316057 RPD_0999
RPAL316056 RPC_0729
RPAL316055 RPE_0737
RPAL258594 RPA4686
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP312153
PSP117
PRUM264731
PPEN278197
PNAP365044
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCAR338963
PATL342610
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109 OB1005
OCAR504832
NWIN323098 NWI_0150
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780 NP1780A
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_0202
NGON242231
NFAR247156 NFA18900
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_1127
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_0959
MSP189918 MKMS_3092
MSP164757 MJLS_3049
MSP164756 MMCS_3033
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1940
MMAR444158 MMARC6_0724
MMAR426368 MMARC7_1231
MMAR402880 MMARC5_1475
MMAR394221
MMAR368407 MEMAR_1366
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0030
MGIL350054 MFLV_3582
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007 MAB_4238C
LXYL281090
LWEL386043
LSAK314315
LPNE400673
LPNE297246
LPNE297245 LPL1471
LPNE272624 LPG1555
LMON265669
LMON169963
LMES203120 LEUM_1934
LLAC272623
LLAC272622
LJOH257314 LJ_0786
LINT267671
LINT189518
LINN272626
LHEL405566 LHV_0140
LGAS324831 LGAS_0544
LDEL390333 LDB1299
LCHO395495
LBRE387344 LVIS_1245
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA0134
KRAD266940
JSP375286
ILOI283942
IHOS453591
HWAL362976 HQ2731A
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914 HMUK_1689
HMOD498761 HM1_1261
HMAR272569
HHEP235279
HHAL349124
HBUT415426
HAUR316274 HAUR_2759
HARS204773
HACI382638
GVIO251221
GURA351605
GTHE420246
GOXY290633
GMET269799
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374 FSU3072
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304 FN1187
FMAG334413
FJOH376686
FALN326424 FRAAL5987
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_0247
ECHA205920
ECAN269484
DOLE96561
DNOD246195
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CMUR243161 TC_0405
CMIC443906 CMM_2627
CMIC31964 CMS0273
CMET456442
CMAQ397948
CKOR374847 KCR_0292
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK0807
CJAP155077
CHYD246194 CHY_0505
CHUT269798
CHOM360107
CGLU196627 CG1503
CFEL264202 CF0464
CEFF196164 CE1444
CDIP257309 DIP1143
CDIF272563 CD1775
CDES477974
CCHL340177
CCAV227941 CCA_00544
CBOT536232 CLM_1331
CBOT508765
CBOT498213 CLD_3389
CBOT441772 CLI_1262
CBOT441771 CLC_1223
CBOT441770 CLB_1211
CBOT36826 CBO1180
CBLO291272
CBLO203907
CBEI290402
CABO218497 CAB530
BWEI315730 BCERKBAB4_0760
BTUR314724
BTHU412694 BALH_0775
BTHU281309 BT9727_0761
BTHE226186
BSUB BSU03600
BSP376 BRADO6746
BSP107806
BPUM315750 BPUM_2384
BLON206672
BLIC279010
BHER314723
BHAL272558 BH0171
BGAR290434
BFRA295405
BFRA272559
BCLA66692 ABC2931
BCER572264 BCA_0913
BCER315749 BCER98_0688
BCER226900 BC_0873
BBUR224326
BBAC264462
BAPH372461
BAPH198804
BANT592021 BAA_0962
BANT568206 BAMEG_3703
BANT261594 GBAA0856
BANT260799 BAS0813
BAMY326423 RBAM_003770
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP1667 ARTH_2344
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768 ACL_0650
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACEL351607
ACAU438753 AZC_0817
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAUR290340 AAUR_3735
AAEO224324


Organism features enriched in list (features available for 388 out of the 410 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000269159112
Disease:gastroenteritis 0.0000137113
Endospores:Yes 0.00289494453
GC_Content_Range4:0-40 2.792e-8171213
GC_Content_Range4:40-60 0.0011096133224
GC_Content_Range4:60-100 0.002020683145
GC_Content_Range7:0-30 0.00003234347
GC_Content_Range7:30-40 0.0001982128166
GC_Content_Range7:50-60 0.000287956107
GC_Content_Range7:60-70 0.000161972134
Genome_Size_Range5:0-2 1.945e-11135155
Genome_Size_Range5:2-4 0.0005027148197
Genome_Size_Range5:4-6 8.537e-1090184
Genome_Size_Range5:6-10 3.485e-71547
Genome_Size_Range9:0-1 0.00001232727
Genome_Size_Range9:1-2 2.608e-7108128
Genome_Size_Range9:4-5 2.556e-84096
Genome_Size_Range9:6-8 1.544e-71038
Gram_Stain:Gram_Neg 4.888e-13182333
Gram_Stain:Gram_Pos 0.0000798118150
Habitat:Aquatic 0.00681427091
Habitat:Multiple 0.0005997102178
Motility:No 0.0000276120151
Motility:Yes 0.0000242155267
Oxygen_Req:Anaerobic 0.005723778102
Oxygen_Req:Facultative 3.495e-9102201
Pathogenic_in:Animal 0.00059963266
Pathogenic_in:Human 0.0000311120213
Pathogenic_in:No 0.0035377164226
Shape:Coccobacillus 0.0011607211
Shape:Rod 3.231e-11195347
Shape:Sphere 0.00375771819
Shape:Spiral 0.00235303034
Temp._range:Mesophilic 0.0024722303473
Temp._range:Thermophilic 0.00573043035



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BHEN283166 ncbi Bartonella henselae Houston-1 0.00870127846
BTRI382640 ncbi Bartonella tribocorum CIP 105476 0.00924957926


Names of the homologs of the genes in the group in each of these orgs
  EG12125   EG11628   EG11626   EG11625   EG10072   EG10007   
BHEN283166 BH06360BH06370BH06360BH06370BH06370BH06350
BTRI382640 BT_0926BT_0928BT_0926BT_0927BT_0928BT_0925


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Bacillary_angiomatosis 0.006849312
Disease:Bartinellosis 0.003430511
Disease:Cat_scratch_fever 0.003430511
Pathogenic_in:Rat 0.003430511



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73670.6593
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176970.5576
AST-PWY (arginine degradation II (AST pathway))120750.5246
PWY-46 (putrescine biosynthesis III)138810.5220
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195980.5174
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181040.5154
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112700.5029
ECASYN-PWY (enterobacterial common antigen biosynthesis)191950.5010
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4917
GLYCOCAT-PWY (glycogen degradation I)2461080.4903
GLUCONSUPER-PWY (D-gluconate degradation)2291020.4749
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001180.4743
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901150.4668
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251000.4666
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961160.4648
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96600.4584
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911140.4570
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491040.4515
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491040.4515
GLUTDEG-PWY (glutamate degradation II)194900.4502
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149770.4498
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91570.4457
PWY-5148 (acyl-CoA hydrolysis)227980.4456
PWY-1269 (CMP-KDO biosynthesis I)3251190.4426
PWY-5913 (TCA cycle variation IV)3011140.4404
XYLCAT-PWY (xylose degradation I)217940.4330
GLUCARDEG-PWY (D-glucarate degradation I)152760.4318
PWY0-981 (taurine degradation IV)106610.4300
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156770.4300
GALACTCAT-PWY (D-galactonate degradation)104600.4268
PWY-6196 (serine racemization)102590.4235
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4224
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81510.4197
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212910.4183
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861080.4170
KDOSYN-PWY (KDO transfer to lipid IVA I)180820.4133
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)179810.4069
PWY-5918 (heme biosynthesis I)2721030.4008
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481180.4003



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11628   EG11626   EG11625   EG10072   EG10007   
EG121250.9990340.9993690.9990860.9995210.999808
EG116280.9996530.9996440.9988570.998996
EG116260.9995770.9987910.999356
EG116250.9991610.998962
EG100720.999412
EG10007



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PAIRWISE BLAST SCORES:

  EG12125   EG11628   EG11626   EG11625   EG10072   EG10007   
EG121250.0f0-2.3e-28---
EG11628-0.0f0-1.9e-792.6e-34-
EG116262.3e-26-0.0f0---
EG11625-9.6e-85-0.0f09.7e-37-
EG10072-2.9e-37-9.7e-370.0f0-
EG10007-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-14-CPLX (histidine ABC transporter) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
             0.9991 0.9984 EG12124 (hisJ) HISJ-MONOMER (HisJ)
   *in cand* 0.9995 0.9990 EG12125 (hisQ) HISQ-MONOMER (HisQ)
   *in cand* 0.9994 0.9990 EG10007 (hisM) HISM-MONOMER (HisM)
             0.9990 0.9980 EG10452 (hisP) HISP-MONOMER (HisP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9988 EG10072 (argT) ARGT-MONOMER (ArgT)
   *in cand* 0.9994 0.9990 EG11625 (artI) ARTI-MONOMER (ArtI)
   *in cand* 0.9995 0.9988 EG11626 (artQ) ARTQ-MONOMER (ArtQ)
   *in cand* 0.9994 0.9989 EG11628 (artJ) ARTJ-MONOMER (ArtJ)

- ABC-3-CPLX (lysine/arginine/ornithine ABC Transporter) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9988 EG10072 (argT) ARGT-MONOMER (ArgT)
   *in cand* 0.9994 0.9990 EG10007 (hisM) HISM-MONOMER (HisM)
             0.9990 0.9980 EG10452 (hisP) HISP-MONOMER (HisP)
   *in cand* 0.9995 0.9990 EG12125 (hisQ) HISQ-MONOMER (HisQ)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9990 EG11625 (artI) ARTI-MONOMER (ArtI)
   *in cand* 0.9995 0.9988 EG11626 (artQ) ARTQ-MONOMER (ArtQ)
   *in cand* 0.9994 0.9989 EG11628 (artJ) ARTJ-MONOMER (ArtJ)

- ABC-4-CPLX (arginine ABC transporter) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9989 EG11628 (artJ) ARTJ-MONOMER (ArtJ)
   *in cand* 0.9994 0.9990 EG11625 (artI) ARTI-MONOMER (ArtI)
   *in cand* 0.9995 0.9988 EG11626 (artQ) ARTQ-MONOMER (ArtQ)
             0.9993 0.9982 EG11627 (artM) ARTM-MONOMER (ArtM)
             0.9990 0.9979 EG11624 (artP) ARTP-MONOMER (ArtP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9990 EG10007 (hisM) HISM-MONOMER (HisM)
   *in cand* 0.9993 0.9988 EG10072 (argT) ARGT-MONOMER (ArgT)
   *in cand* 0.9995 0.9990 EG12125 (hisQ) HISQ-MONOMER (HisQ)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10007 EG10072 EG12125 (centered at EG12125)
EG11625 EG11626 EG11628 (centered at EG11626)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12125   EG11628   EG11626   EG11625   EG10072   EG10007   
224/623145/623221/623143/623118/623216/623
AAUR290340:2:Tyes-----0
AAVE397945:0:Tyes0-0---
ACAU438753:0:Tyes--0---
ACRY349163:8:Tyes0----0
AHYD196024:0:Tyes100801010071009
ALAI441768:0:Tyes--0---
AMET293826:0:Tyes0-1957--0
APLE416269:0:Tyes1212-0
APLE434271:0:Tno1212-0
ASAL382245:5:Tyes194001019411939
ASP1667:3:Tyes--0---
ASP232721:2:Tyes0-0---
BABO262698:0:Tno----440
BABO262698:1:Tno-0-0--
BAMB339670:2:Tno-11720477--
BAMB339670:3:Tno1---02
BAMB398577:2:Tno-168601686--
BAMB398577:3:Tno1---02
BAMY326423:0:Tyes--0---
BANT260799:0:Tno--0---
BANT261594:2:Tno--0---
BANT568206:2:Tyes--0---
BANT592021:2:Tno--0---
BBAC360095:0:Tyes1-1-20
BBRO257310:0:Tyes109412321233--0
BCAN483179:0:Tno---01-
BCAN483179:1:Tno131--0
BCEN331271:1:Tno-0-0--
BCEN331271:2:Tno1-1-02
BCEN331272:2:Tyes-0-0--
BCEN331272:3:Tyes1-1-02
BCER226900:1:Tyes--0---
BCER288681:0:Tno-0452---
BCER315749:1:Tyes--0---
BCER405917:0:Tyes0-0---
BCER572264:1:Tno--0---
BCIC186490:0:Tyes110109110109-0
BCLA66692:0:Tyes-----0
BHAL272558:0:Tyes--0---
BHEN283166:0:Tyes121220
BJAP224911:0:Fyes6112--0--
BMAL243160:0:Tno--0---
BMAL243160:1:Tno12-220
BMAL320388:0:Tno--0---
BMAL320388:1:Tno12-220
BMAL320389:0:Tyes--0---
BMAL320389:1:Tyes10-002
BMEL224914:0:Tno-----0
BMEL224914:1:Tno-0-00-
BMEL359391:0:Tno----460
BMEL359391:1:Tno-0-0--
BOVI236:0:Tyes----036
BOVI236:1:Tyes-0-0--
BPAR257311:0:Tno209-209--0
BPER257313:0:Tyes04420--156
BPET94624:0:Tyes386-0--386
BPSE272560:0:Tyes--0---
BPSE272560:1:Tyes12-220
BPSE320372:0:Tno--0---
BPSE320372:1:Tno12-220
BPSE320373:0:Tno--0---
BPSE320373:1:Tno12-220
BPUM315750:0:Tyes--0---
BQUI283165:0:Tyes1-1002
BSP36773:1:Tyes-2150-0--
BSP36773:2:Tyes0-1472-14711473
BSP376:0:Tyes---0--
BSUB:0:Tyes--0---
BSUI204722:0:Tyes---01-
BSUI204722:1:Tyes131--0
BSUI470137:0:Tno----0-
BSUI470137:1:Tno900900-89
BTHA271848:0:Tno--0714--
BTHA271848:1:Tno12--20
BTHU281309:1:Tno--0---
BTHU412694:1:Tno--0---
BTRI382640:1:Tyes131230
BVIE269482:4:Tyes0-----
BVIE269482:5:Tyes--0---
BVIE269482:6:Tyes-0-0--
BVIE269482:7:Tyes----02
BWEI315730:4:Tyes--0---
BXEN266265:1:Tyes345034500346
CABO218497:0:Tyes--0---
CACE272562:1:Tyes293-0--0
CAULO:0:Tyes--0--0
CBOT36826:1:Tno-----0
CBOT441770:0:Tyes-----0
CBOT441771:0:Tno-----0
CBOT441772:1:Tno-----0
CBOT498213:1:Tno-----0
CBOT515621:2:Tyes983----0
CBOT536232:0:Tno-----0
CBUR227377:1:Tyes1010-2
CBUR360115:1:Tno1010-2
CBUR434922:2:Tno1212-0
CCAV227941:1:Tyes--0---
CCON360104:2:Tyes0--1199-0
CCUR360105:0:Tyes0----0
CDIF272563:1:Tyes0-----
CDIP257309:0:Tyes-----0
CEFF196164:0:Fyes-----0
CFEL264202:1:Tyes--0---
CFET360106:0:Tyes-0-0--
CGLU196627:0:Tyes-----0
CHYD246194:0:Tyes0-----
CJEI306537:0:Tyes-----0
CKLU431943:1:Tyes0-0--0
CKOR374847:0:Tyes-----0
CMIC31964:2:Tyes--0---
CMIC443906:2:Tyes--0---
CMUR243161:1:Tyes--0---
CNOV386415:0:Tyes0----0
CPEL335992:0:Tyes1-1--0
CSAL290398:0:Tyes010010101
CSP501479:6:Fyes0----1
CTET212717:0:Tyes0----0
CVIO243365:0:Tyes122852286228502
DDES207559:0:Tyes1218----0
DETH243164:0:Tyes0----0
DGEO319795:1:Tyes--892--0
DHAF138119:0:Tyes1490----0
DPSY177439:2:Tyes0-0--0
DRAD243230:3:Tyes10461--1
DRED349161:0:Tyes650-6500--
DSHI398580:5:Tyes0----1
DSP216389:0:Tyes0----0
DSP255470:0:Tno0----0
DVUL882:1:Tyes577-845--0
ECAR218491:0:Tyes386310387385
ECOL199310:0:Tno181302318141812
ECOL316407:0:Tno146902314711468
ECOL331111:6:Tno160802316101607
ECOL362663:0:Tno146510114671464
ECOL364106:1:Tno172802317301727
ECOL405955:2:Tyes148602314881485
ECOL409438:6:Tyes171602317181715
ECOL413997:0:Tno135802313601357
ECOL439855:4:Tno154702315491546
ECOL469008:0:Tno213601358135703
ECOL481805:0:Tno213781376137503
ECOL585034:0:Tno146302314641462
ECOL585035:0:Tno150502315071504
ECOL585055:0:Tno163002316321629
ECOL585056:2:Tno159502315971594
ECOL585057:0:Tno160002316021599
ECOL585397:0:Tno187602318781875
ECOL83334:0:Tno229002322922289
ECOLI:0:Tno149102314931490
ECOO157:0:Tno229702322992296
EFAE226185:3:Tyes0-----
EFER585054:1:Tyes214714915003
ESP42895:1:Tyes148202314841481
FALN326424:0:Tyes-----0
FNOD381764:0:Tyes-010-1
FNUC190304:0:Tyes-0----
FSUC59374:0:Tyes-----0
GSUL243231:0:Tyes2593-0--0
HAUR316274:2:Tyes0-----
HCHE349521:0:Tyes101002
HDUC233412:0:Tyes1010-2
HINF281310:0:Tyes121220
HINF374930:0:Tyes101002
HINF71421:0:Tno121220
HMOD498761:0:Tyes---0--
HMUK485914:1:Tyes-----0
HSOM205914:1:Tyes1010-2
HSOM228400:0:Tno1010-2
HWAL362976:1:Tyes-----0
JSP290400:1:Tyes1----0
KPNE272620:2:Tyes132333235323640
LACI272621:0:Tyes--0---
LBRE387344:2:Tyes0-----
LCAS321967:1:Tyes0-746---
LDEL321956:0:Tyes--815--0
LDEL390333:0:Tyes--0---
LGAS324831:0:Tyes--0---
LHEL405566:0:Tyes--0---
LINT363253:3:Tyes0----586
LJOH257314:0:Tyes--0---
LMES203120:1:Tyes--0---
LPLA220668:0:Tyes0-0--0
LPNE272624:0:Tno-0----
LPNE297245:1:Fno-0----
LREU557436:0:Tyes0-0--0
LSPH444177:1:Tyes4117----0
MABS561007:1:Tyes-----0
MAQU351348:2:Tyes1010-2
MGIL350054:3:Tyes-----0
MHUN323259:0:Tyes-----0
MLOT266835:2:Tyes510039865100036135099
MMAR368407:0:Tyes--0---
MMAR402880:1:Tyes-0----
MMAR426368:0:Tyes-0----
MMAR444158:0:Tyes-0----
MMAZ192952:0:Tyes0-----
MPET420662:1:Tyes101002
MSME246196:0:Tyes0----3039
MSP164756:1:Tno-----0
MSP164757:0:Tno-----0
MSP189918:2:Tyes-----0
MSP266779:3:Tyes101002
MSP400668:0:Tyes101002
MSP409:2:Tyes0-0--1
MSTA339860:0:Tyes-----0
MSUC221988:0:Tyes15041002
MTHE264732:0:Tyes0-----
MVAN350058:0:Tyes--2736--0
NFAR247156:2:Tyes-----0
NHAM323097:2:Tyes---0--
NPHA348780:2:Tyes-----0
NWIN323098:0:Tyes---0--
OANT439375:4:Tyes0--1911911
OANT439375:5:Tyes-024---
OIHE221109:0:Tyes--0---
PAER208963:0:Tyes134183419341820
PAER208964:0:Tno122662267226602
PARC259536:0:Tyes202113
PCRY335284:1:Tyes212003
PENT384676:0:Tyes131593160190519050
PFLU205922:0:Tyes909101782665908
PFLU216595:1:Tyes9684288042884288967
PFLU220664:0:Tyes9071018691869906
PING357804:0:Tyes121220
PLUM243265:0:Fyes010112922
PMEN399739:0:Tyes11366136713666620
PMOB403833:0:Tyes2----0
PMUL272843:1:Tyes1010-2
PPRO298386:1:Tyes----0-
PPRO298386:2:Tyes662010-661
PPUT160488:0:Tno419010141914189
PPUT351746:0:Tyes115010114911491151
PPUT76869:0:Tno373310373437343732
PSP296591:2:Tyes--0--2088
PSP56811:2:Tyes1313-0
PSTU379731:0:Tyes101002
PSYR205918:0:Tyes3060135400307
PSYR223283:2:Tyes227703485002278
RCAS383372:0:Tyes0----0
RDEN375451:4:Tyes1----0
RETL347834:2:Tyes----0-
RETL347834:3:Tyes0----1
RETL347834:5:Tyes-010--
REUT264198:3:Tyes101410---
REUT381666:2:Tyes72210--3180
RFER338969:1:Tyes121220
RLEG216596:3:Tyes1---0-
RLEG216596:4:Tyes-----0
RLEG216596:6:Tyes-010--
RPAL258594:0:Tyes---0--
RPAL316055:0:Tyes---0--
RPAL316056:0:Tyes---0--
RPAL316057:0:Tyes---0--
RPAL316058:0:Tyes---0--
RPOM246200:0:Tyes1-1-0-
RPOM246200:1:Tyes-----0
RRUB269796:1:Tyes101002
RSAL288705:0:Tyes--0---
RSP101510:3:Fyes--1082--0
RSP357808:0:Tyes0----0
RSPH272943:4:Tyes0----1
RSPH349101:2:Tno0----1
RSPH349102:5:Tyes1----0
RXYL266117:0:Tyes-----0
SAGA205921:0:Tno0-----
SAGA208435:0:Tno0-----
SAGA211110:0:Tyes0-----
SAUR158878:1:Tno--0---
SAUR158879:1:Tno--0---
SAUR196620:0:Tno--0---
SAUR273036:0:Tno531-0---
SAUR282458:0:Tno578-0--578
SAUR282459:0:Tno565-0---
SAUR359786:1:Tno563-0---
SAUR359787:1:Tno530-0---
SAUR367830:3:Tno502-0---
SAUR418127:0:Tyes--0---
SAUR426430:0:Tno604-0---
SAUR93061:0:Fno710-0---
SAUR93062:1:Tno482-0---
SAVE227882:1:Fyes-----0
SBOY300268:1:Tyes146002314621459
SCO:2:Fyes-----0
SDYS300267:1:Tyes9801010097
SENT209261:0:Tno214241422142103
SENT220341:0:Tno149302314951492
SENT295319:0:Tno213061304130303
SENT321314:2:Tno149202314941491
SENT454169:2:Tno152502315271524
SEPI176279:1:Tyes--0---
SEPI176280:0:Tno--0---
SFLE198214:0:Tyes147502314771474
SFLE373384:0:Tno144302314451442
SFUM335543:0:Tyes49-0---
SGLO343509:3:Tyes121220
SGOR29390:0:Tyes1119-443--0
SHAE279808:0:Tyes0-499--0
SHAL458817:0:Tyes--0---
SHIGELLA:0:Tno142302314251422
SLAC55218:1:Fyes1----0
SMED366394:2:Tyes---0--
SMED366394:3:Tyes013961397-11398
SMEL266834:0:Tyes-----0
SMEL266834:1:Tyes---0--
SMEL266834:2:Tyes013361337-1-
SMUT210007:0:Tyes--0---
SPEA398579:0:Tno0-----
SPNE1313:0:Tyes0-682---
SPNE170187:0:Tyes0-173---
SPNE171101:0:Tno0-715---
SPNE487213:0:Tno0-459---
SPNE487214:0:Tno0-760---
SPNE488221:0:Tno0-734---
SPRO399741:1:Tyes168702316881686
SPYO160490:0:Tno0-----
SPYO186103:0:Tno0-----
SPYO193567:0:Tno0-----
SPYO198466:0:Tno0-----
SPYO286636:0:Tno0-----
SPYO293653:0:Tno0-----
SPYO319701:0:Tyes0-----
SPYO370551:0:Tno0-----
SPYO370552:0:Tno0-----
SPYO370553:0:Tno0-----
SPYO370554:0:Tyes0-----
SSAP342451:2:Tyes0-----
SSON300269:1:Tyes144402314461443
SSP1148:0:Tyes0-----
SSP292414:2:Tyes0----1
SSP644076:3:Fyes0----1
SSUI391296:0:Tyes--0---
STHE264199:0:Tyes0-----
STHE292459:0:Tyes0-----
STHE299768:0:Tno0-----
STHE322159:2:Tyes0-----
STYP99287:1:Tyes145402314561453
TLET416591:0:Tyes0----2
TMAR243274:0:Tyes-101-0
TPET390874:0:Tno-01--1
TPSE340099:0:Tyes-10---
TSP1755:0:Tyes0-0---
TSP28240:0:Tyes-01--1
TTEN273068:0:Tyes--0---
VCHO:0:Tyes1---20
VCHO:1:Fyes-101--
VCHO345073:0:Tno-101--
VCHO345073:1:Tno1---20
VEIS391735:1:Tyes157715791157901578
VFIS312309:2:Tyes121220
VPAR223926:0:Tyes-010--
VPAR223926:1:Tyes1---02
VVUL196600:1:Tyes-010--
VVUL196600:2:Tyes1---20
VVUL216895:0:Tno-010--
VVUL216895:1:Tno1---02
YENT393305:1:Tyes116316516602
YPES187410:5:Tno112321219121802
YPES214092:3:Tno136810113671369
YPES349746:2:Tno111761187118820
YPES360102:3:Tyes14570101114581456
YPES377628:2:Tno148147147020
YPES386656:2:Tno137536436320
YPSE273123:2:Tno1239091012401238
YPSE349747:2:Tno111991187118602



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