CANDIDATE ID: 511

CANDIDATE ID: 511

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9914040e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG11191 (slmA) (b3641)
   Products of gene:
     - EG11191-MONOMER (cell division inhibitor)

- EG11190 (coaD) (b3634)
   Products of gene:
     - PANTEPADENYLYLTRAN-MONOMER (pantetheine-phosphate adenylyltransferase monomer)
     - COADTRI-CPLX (phosphopantetheine adenylyltransferase)
       Reactions:
        4'-phosphopantetheine + ATP  =  dephospho-CoA + diphosphate
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)

- EG10891 (rpmG) (b3636)
   Products of gene:
     - EG10891-MONOMER (50S ribosomal subunit protein L33)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)

- EG10886 (rpmB) (b3637)
   Products of gene:
     - EG10886-MONOMER (50S ribosomal subunit protein L28)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)

- EG10329 (mutM) (b3635)
   Products of gene:
     - EG10329-MONOMER (formamidopyrimidine DNA glycosylase)
       Reactions:
        a damaged DNA (purine or pyrimidine)  =  an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage

- EG10004 (dfp) (b3639)
   Products of gene:
     - EG10004-MONOMER (Dfp)
     - CPLX0-341 (fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase)
       Reactions:
        D-4'-phosphopantothenate + L-cysteine + CTP  ->  diphosphate + CMP + R-4'-phosphopantothenoyl-L-cysteine + H+
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)
        R-4'-phosphopantothenoyl-L-cysteine + H+  ->  4'-phosphopantetheine + CO2
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 221
Effective number of orgs (counting one per cluster within 468 clusters): 151

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STRO369723 ncbi Salinispora tropica CNB-4405
SSP94122 ncbi Shewanella sp. ANA-36
SSP644076 Silicibacter sp. TrichCH4B5
SSP292414 ncbi Ruegeria sp. TM10405
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SAVE227882 ncbi Streptomyces avermitilis MA-46805
SARE391037 ncbi Salinispora arenicola CNS-2055
SALA317655 ncbi Sphingopyxis alaskensis RB22565
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP357808 ncbi Roseiflexus sp. RS-15
RSP101510 ncbi Rhodococcus jostii RHA15
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
RETL347834 ncbi Rhizobium etli CFN 425
RDEN375451 ncbi Roseobacter denitrificans OCh 1145
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.5
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OCAR504832 ncbi Oligotropha carboxidovorans OM55
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NFAR247156 ncbi Nocardia farcinica IFM 101525
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra5
MTUB336982 ncbi Mycobacterium tuberculosis F115
MTBRV ncbi Mycobacterium tuberculosis H37Rv5
MTBCDC ncbi Mycobacterium tuberculosis CDC15515
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL16
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MPET420662 ncbi Methylibium petroleiphilum PM16
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK5
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath5
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P25
MBOV233413 ncbi Mycobacterium bovis AF2122/975
MAVI243243 ncbi Mycobacterium avium 1045
MAQU351348 ncbi Marinobacter aquaeolei VT86
MABS561007 ncbi Mycobacterium abscessus ATCC 199775
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
JSP290400 ncbi Jannaschia sp. CCS15
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HNEP81032 Hyphomonas neptunium5
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf45
GOXY290633 ncbi Gluconobacter oxydans 621H5
GMET269799 ncbi Geobacter metallireducens GS-155
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DARO159087 ncbi Dechloromonas aromatica RCB6
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA5
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)5
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus6
CEFF196164 ncbi Corynebacterium efficiens YS-3145
CAULO ncbi Caulobacter crescentus CB155
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BCIC186490 Candidatus Baumannia cicadellinicola5
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ACRY349163 ncbi Acidiphilium cryptum JF-55
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N6
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  EG11191   EG11190   EG10891   EG10886   EG10329   EG10004   
YPSE349747 YPSIP31758_0058YPSIP31758_0065YPSIP31758_0063YPSIP31758_0062YPSIP31758_0064YPSIP31758_0060
YPSE273123 YPTB0043YPTB0050YPTB0048YPTB0047YPTB0049YPTB0045
YPES386656 YPDSF_3859YPDSF_3852YPDSF_3854YPDSF_3855YPDSF_3853YPDSF_3857
YPES377628 YPN_3804YPN_3797YPN_3799YPN_3800YPN_3798YPN_3802
YPES360102 YPA_3496YPA_3489YPA_3491YPA_3492YPA_3490YPA_3494
YPES349746 YPANGOLA_A0052YPANGOLA_A0059YPANGOLA_A0057YPANGOLA_A0056YPANGOLA_A0058YPANGOLA_A0054
YPES214092 YPO0046YPO0053YPO0051YPO0050YPO0052YPO0048
YPES187410 Y0095Y0088Y0091Y0090Y0093
YENT393305 YE0060YE0067YE0065YE0064YE0066YE0062
XORY360094 XOOORF_2086XOOORF_5180XOOORF_5179XOOORF_5092XOOORF_4882
XORY342109 XOO2372XOO4296XOO4295XOO0270XOO0463
XFAS405440 XFASM12_0298XFASM12_0547XFASM12_0546XFASM12_0143XFASM12_0126
XFAS183190 PD_0275PD_0489PD_0488PD_0138PD_0118
XFAS160492 XF0980XF1207XF1206XF0170XF0149
XCAM487884 XCC-B100_1781XCC-B100_4229XCC-B100_4230XCC-B100_4366XCC-B100_4043
XCAM316273 XCAORF_2682XCAORF_0227XCAORF_0226XCAORF_4482XCAORF_0430
XCAM314565 XC_1723XC_4122XC_4123XC_4239XC_3943
XCAM190485 XCC2391XCC4033XCC4034XCC4147XCC3859
XAXO190486 XAC2526XAC4158XAC4159XAC4286XAC3914
VVUL216895 VV1_0829VV1_0819VV1_0823VV1_0824VV1_0821VV1_0828
VVUL196600 VV0282VV0292VV0287VV0286VV0289VV0283
VPAR223926 VP0180VP0190VP0186VP0185VP0189VP0181
VFIS312309 VF0123VF0132VF0128VF0127VF0130VF0125
VEIS391735 VEIS_4765VEIS_1756VEIS_1757VEIS_0955VEIS_2654
VCHO345073 VC0395_A2593VC0395_A2603VC0395_A2600VC0395_A2599VC0395_A2602VC0395_A2595
VCHO VC0214VC0222VC0219VC0218VC0221VC0215
TTUR377629 TERTU_0188TERTU_0246TERTU_0180TERTU_0181TERTU_0178TERTU_0185
TDEN292415 TBD_2389TBD_0380TBD_2590TBD_2589TBD_0383TBD_2587
TCRU317025 TCR_1930TCR_1919TCR_1918TCR_1921TCR_1915
STYP99287 STM3732STM3725STM3727STM3728STM3726STM3730
STRO369723 STROP_1282STROP_2854STROP_2855STROP_1288STROP_1863
SSP94122 SHEWANA3_3773SHEWANA3_4091SHEWANA3_3768SHEWANA3_3769SHEWANA3_4084SHEWANA3_3771
SSP644076 SCH4B_4579SCH4B_1830SCH4B_3990SCH4B_3360SCH4B_1303
SSP292414 TM1040_1109TM1040_1915TM1040_0671TM1040_3029TM1040_0458
SSON300269 SSO_3765SSO_3773SSO_3771SSO_3770SSO_3772SSO_3767
SSED425104 SSED_0382SSED_0115SSED_0387SSED_0386SSED_0117SSED_0384
SPRO399741 SPRO_4845SPRO_4838SPRO_4840SPRO_4841SPRO_4839SPRO_4843
SPEA398579 SPEA_3840SPEA_4107SPEA_3835SPEA_3836SPEA_4104SPEA_3838
SONE211586 SO_4251SO_4684SO_4246SO_4247SO_4726SO_4249
SLOI323850 SHEW_3484SHEW_3692SHEW_3479SHEW_3480SHEW_3690SHEW_3482
SLAC55218 SL1157_3020SL1157_2094SL1157_0112SL1157_0809SL1157_0579
SHIGELLA TTKKDTBRPMGRPMBMUTMDFP
SHAL458817 SHAL_0426SHAL_0135SHAL_0431SHAL_0430SHAL_0140SHAL_0428
SGLO343509 SG2211SG2205SG2207SG2208SG2206SG2209
SFLE373384 SFV_3889SFV_3895SFV_3893SFV_3894SFV_3891
SFLE198214 AAN45127.1AAN45120.1AAN45122.1AAN45123.1AAN45121.1AAN45125.1
SENT454169 SEHA_C4058SEHA_C4051SEHA_C4053SEHA_C4054SEHA_C4052SEHA_C4056
SENT321314 SCH_3655SCH_3648SCH_3650SCH_3651SCH_3649SCH_3653
SENT295319 SPA3584SPA3577SPA3579SPA3580SPA3578SPA3582
SENT220341 STY4062STY4069STY4067STY4066STY4068STY4064
SENT209261 T3786T3793T3791T3790T3792T3788
SDYS300267 SDY_4071SDY_4064SDY_4066SDY_4067SDY_4065SDY_4069
SDEN318161 SDEN_0323SDEN_0208SDEN_0328SDEN_0327SDEN_0210SDEN_0325
SDEG203122 SDE_3674SDE_3599SDE_3680SDE_3679SDE_3681SDE_3677
SCO SCO2775SCO5568SCO3428SCO3429SCO5573
SBOY300268 SBO_3643SBO_3636SBO_3638SBO_3639SBO_3637SBO_3641
SBAL402882 SHEW185_0373SHEW185_4331SHEW185_0378SHEW185_0377SHEW185_4324SHEW185_0375
SBAL399599 SBAL195_0385SBAL195_4471SBAL195_0390SBAL195_0389SBAL195_4464SBAL195_0387
SAVE227882 SAV2669SAV4643SAV4642SAV2664SAV6873
SARE391037 SARE_1172SARE_2904SARE_2903SARE_1178SARE_1856
SALA317655 SALA_2193SALA_2947SALA_2750SALA_3187SALA_3182
RSPH349102 RSPH17025_1392RSPH17025_0670RSPH17025_3114RSPH17025_2592RSPH17025_0484
RSPH349101 RSPH17029_1606RSPH17029_0534RSPH17029_0726RSPH17029_0008RSPH17029_2252
RSPH272943 RSP_2960RSP_1887RSP_2016RSP_1339RSP_0599
RSP357808 ROSERS_2610ROSERS_1008ROSERS_0601ROSERS_1946ROSERS_1561
RSP101510 RHA1_RO06519RHA1_RO05616RHA1_RO05617RHA1_RO06523RHA1_RO07157
RSOL267608 RSC0031RSC0390RSC2446RSC2445RSC0399RSC2461
RRUB269796 RRU_A1743RRU_A3205RRU_A0210RRU_A3799RRU_A3796
RPOM246200 SPO_2200SPO_2965SPO_0974SPO_0146SPO_0408
RMET266264 RMET_0142RMET_0285RMET_2871RMET_2870RMET_0293RMET_2887
RFER338969 RFER_3521RFER_1667RFER_3181RFER_3180RFER_1656RFER_2647
REUT381666 H16_A0210H16_A0367H16_A3035H16_A3034H16_A0377H16_A3048
REUT264198 REUT_A0182REUT_A0338REUT_A2734REUT_A2733REUT_A0346REUT_A2747
RETL347834 RHE_CH02113RHE_CH01634RHE_CH03816RHE_CH00355RHE_CH00342
RDEN375451 RD1_2985RD1_1997RD1_1680RD1_0204RD1_1200
RCAS383372 RCAS_1807RCAS_3334RCAS_3904RCAS_3836RCAS_3412
PSYR223283 PSPTO_3319PSPTO_0417PSPTO_0090PSPTO_0089PSPTO_0414PSPTO_0085
PSYR205918 PSYR_3154PSYR_4758PSYR_0225PSYR_0224PSYR_4761PSYR_0221
PSTU379731 PST_4002PST_0108PST_0107PST_4007PST_0472
PSP56811 PSYCPRWF_2006PSYCPRWF_0588PSYCPRWF_0589PSYCPRWF_0382PSYCPRWF_0492
PSP312153 PNUC_2012PNUC_1924PNUC_1735PNUC_1734PNUC_1917PNUC_1742
PSP296591 BPRO_3979BPRO_1282BPRO_3803BPRO_3802BPRO_1297BPRO_3180
PPUT76869 PPUTGB1_5173PPUTGB1_5332PPUTGB1_5333PPUTGB1_5175PPUTGB1_5336
PPUT351746 PPUT_4997PPUT_5191PPUT_5192PPUT_4999PPUT_5195
PPUT160488 PP_5123PP_5281PP_5282PP_5125PP_5285
PPRO298386 PBPRA0200PBPRA0208PBPRA0204PBPRA0203PBPRA0206PBPRA0201
PNAP365044 PNAP_0895PNAP_3215PNAP_3214PNAP_0903PNAP_1186
PMUL272843 PM1155PM1304PM1150PM1151PM1145PM1153
PMEN399739 PMEN_4191PMEN_4373PMEN_4374PMEN_4197PMEN_4377
PLUM243265 PLU4868PLU4856PLU4863PLU4864PLU4857PLU4866
PING357804 PING_0059PING_0043PING_0054PING_0055PING_0053PING_0057
PHAL326442 PSHAA2645PSHAA2282PSHAA2641PSHAA2642PSHAA0447PSHAA2644
PFLU220664 PFL_5868PFL_6048PFL_6049PFL_5870PFL_6052
PFLU216595 PFLU4083PFLU5791PFLU5979PFLU5980PFLU5793PFLU5983
PFLU205922 PFL_5348PFL_5536PFL_5537PFL_5351PFL_5540
PENT384676 PSEEN0290PSEEN5426PSEEN5427PSEEN0287PSEEN5432
PATL342610 PATL_0044PATL_0053PATL_0049PATL_0048PATL_0051PATL_0045
PARC259536 PSYC_0326PSYC_1711PSYC_1710PSYC_0342PSYC_1833
PAER208964 PA0363PA5315PA5316PA0357PA5320
PAER208963 PA14_04760PA14_70180PA14_70190PA14_04670PA14_70240
OCAR504832 OCAR_4849OCAR_5778OCAR_4063OCAR_4492OCAR_4489
NOCE323261 NOC_1930NOC_2641NOC_2640NOC_2648NOC_2992
NMUL323848 NMUL_A1117NMUL_A2734NMUL_A2140NMUL_A2139NMUL_A0582NMUL_A2137
NFAR247156 NFA41890NFA49760NFA49750NFA41830NFA36140
NEUT335283 NEUT_1933NEUT_2341NEUT_0780NEUT_0781NEUT_2512NEUT_0783
NEUR228410 NE0968NE1466NE1465NE2552NE1463
NARO279238 SARO_2252SARO_3188SARO_0222SARO_0596SARO_0591
MTUB419947 MRA_2993MRA_2072MRA_2073MRA_2950MRA_1400
MTUB336982 TBFG_12980TBFG_12094TBFG_12095TBFG_12939TBFG_11420
MTBRV RV2965CRV2057CRV2058CRV2924CRV1391
MTBCDC MT3043MT2117.1MT2118MT2994MT1436
MSUC221988 MS1936MS1951MS1943MS1942MS1944MS1938
MSP400668 MMWYL1_0620MMWYL1_0548MMWYL1_0630MMWYL1_0629MMWYL1_0631MMWYL1_0623
MSME246196 MSMEG_2414MSMEG_6067MSMEG_6068MSMEG_2419MSMEG_3054
MPET420662 MPE_A0501MPE_A3224MPE_A1116MPE_A1117MPE_A3233MPE_A2571
MLOT266835 MLL0730MSR0848MLR3552MLL5585MLR3167
MGIL350054 MFLV_4196MFLV_1311MFLV_1312MFLV_4191MFLV_3738
MFLA265072 MFLA_2257MFLA_0737MFLA_0311MFLA_0312MFLA_0686MFLA_0314
MCAP243233 MCA_0066MCA_2340MCA_2339MCA_3072MCA_2784
MBOV410289 BCG_2986CBCG_2076CBCG_2077CBCG_2946CBCG_1452
MBOV233413 MB2989CMB2083CMB2084CMB2949CMB1426
MAVI243243 MAV_3810MAV_4876MAV_4875MAV_3782MAV_3383
MAQU351348 MAQU_3502MAQU_3575MAQU_3566MAQU_3565MAQU_3749MAQU_3563
MABS561007 MAB_3259CMAB_0333CMAB_0334CMAB_3255CMAB_2821C
LPNE400673 LPC_2752LPC_2866LPC_2865LPC_2743LPC_1990
LPNE297246 LPP0609LPP0543LPP0544LPP0616LPP2552
LPNE297245 LPL0590LPL0519LPL0520LPL0599LPL2408
LPNE272624 LPG0548LPG0478LPG0479LPG0557LPG2488
LCHO395495 LCHO_0542LCHO_3502LCHO_0752LCHO_0753LCHO_3494LCHO_2645
KPNE272620 GKPORF_B3344GKPORF_B3337GKPORF_B3339GKPORF_B3340GKPORF_B3338GKPORF_B3342
JSP375286 MMA_3231MMA_3135MMA_2553MMA_2552MMA_3124MMA_0826
JSP290400 JANN_1916JANN_1225JANN_3424JANN_4210JANN_0907
ILOI283942 IL0237IL0271IL0242IL0241IL0245IL0239
HSOM228400 HSM_0006HSM_0422HSM_0011HSM_0010HSM_0012HSM_0008
HSOM205914 HS_0141HS_1589HS_0145AHS_0145HS_0146HS_0143
HNEP81032 HNE_2759HNE_2282HNE_3498HNE_3274HNE_3268
HINF71421 HI_0955HI_0651HI_0950HI_0951HI_0946HI_0953
HINF374930 CGSHIEE_07185CGSHIEE_08945CGSHIEE_07210CGSHIEE_07205CGSHIEE_07235CGSHIEE_07195
HINF281310 NTHI1128NTHI0771NTHI1123NTHI1124NTHI1118NTHI1126
HHAL349124 HHAL_2309HHAL_2313HHAL_2314HHAL_2311HHAL_2299
HDUC233412 HD_0735HD_0453HD_0730HD_0731HD_0710HD_0733
HCHE349521 HCH_06098HCH_01010HCH_01018HCH_01019HCH_00567HCH_01021
HARS204773 HEAR2984HEAR2900HEAR2470HEAR2469HEAR2889HEAR0843
GURA351605 GURA_3410GURA_2500GURA_1054GURA_3674GURA_2927
GOXY290633 GOX0888GOX2277GOX0106GOX2500GOX2498
GMET269799 GMET_3466GMET_1759GMET_0612GMET_1206GMET_2673
GBET391165 GBCGDNIH1_1218GBCGDNIH1_0801GBCGDNIH1_0614GBCGDNIH1_0159GBCGDNIH1_0157
FTUL458234 FTA_1405FTA_0550FTA_0551FTA_1627FTA_0854
FTUL418136 FTW_1430FTW_0330FTW_0331FTW_1550FTW_1186
FTUL401614 FTN_0754FTN_0332FTN_0333FTN_0603FTN_1128
FTUL393115 FTF0581FTF1604FTF1603FTF0693CFTF1147C
FTUL393011 FTH_1295FTH_0518FTH_0519FTH_1493FTH_0802
FTUL351581 FTL_1330FTL_0521FTL_0522FTL_1543FTL_0808
FRANT COADRPMGRPMBMUTMDFP
FPHI484022 FPHI_0122FPHI_0493FPHI_0492FPHI_0238FPHI_1904
ESP42895 ENT638_0098ENT638_0105ENT638_0103ENT638_0102ENT638_0104ENT638_0100
EFER585054 EFER_3932EFER_3925EFER_3927EFER_3928EFER_3926EFER_3930
ECOO157 TTKKDTBRPMGRPMBMUTMDFP
ECOL83334 ECS4516ECS4509ECS4511ECS4512ECS4510ECS4514
ECOL585397 ECED1_4325ECED1_4317ECED1_4319ECED1_4320ECED1_4318ECED1_4323
ECOL585057 ECIAI39_4159ECIAI39_4152ECIAI39_4154ECIAI39_4155ECIAI39_4153ECIAI39_4157
ECOL585056 ECUMN_4156ECUMN_4148ECUMN_4150ECUMN_4151ECUMN_4149ECUMN_4154
ECOL585055 EC55989_4106EC55989_4098EC55989_4100EC55989_4101EC55989_4099EC55989_4104
ECOL585035 ECS88_4055ECS88_4048ECS88_4050ECS88_4051ECS88_4049ECS88_4053
ECOL585034 ECIAI1_3812ECIAI1_3804ECIAI1_3806ECIAI1_3807ECIAI1_3805ECIAI1_3810
ECOL481805 ECOLC_0070ECOLC_0077ECOLC_0075ECOLC_0074ECOLC_0076ECOLC_0072
ECOL469008 ECBD_0085ECBD_0092ECBD_0090ECBD_0089ECBD_0091ECBD_0087
ECOL439855 ECSMS35_3976ECSMS35_3969ECSMS35_3971ECSMS35_3972ECSMS35_3970ECSMS35_3974
ECOL413997 ECB_03498ECB_03491ECB_03493ECB_03494ECB_03492ECB_03496
ECOL409438 ECSE_3921ECSE_3914ECSE_3916ECSE_3917ECSE_3915ECSE_3919
ECOL364106 UTI89_C4185UTI89_C4177UTI89_C4180UTI89_C4181UTI89_C4178UTI89_C4183
ECOL362663 ECP_3739ECP_3732ECP_3734ECP_3735ECP_3733ECP_3737
ECOL331111 ECE24377A_4142ECE24377A_4135ECE24377A_4137ECE24377A_4138ECE24377A_4136ECE24377A_4140
ECOL316407 ECK3631:JW5641:B3641ECK3624:JW3609:B3634ECK3626:JW3611:B3636ECK3627:JW3612:B3637ECK3625:JW3610:B3635ECK3629:JW5642:B3639
ECOL199310 C4465C4458C4460C4461C4459C4463
ECAR218491 ECA0142ECA0150ECA0147ECA0146ECA0148ECA0144
DSHI398580 DSHI_1744DSHI_2781DSHI_2583DSHI_3369DSHI_2976
DARO159087 DARO_0627DARO_3723DARO_3144DARO_3143DARO_3726DARO_3141
CVES412965 COSY_0345COSY_0888COSY_0889COSY_0314COSY_0727
CSP78 CAUL_2870CAUL_1499CAUL_4128CAUL_5075CAUL_5070
CSP501479 CSE45_1627CSE45_1052CSE45_0605CSE45_3472CSE45_4341
CSAL290398 CSAL_2985CSAL_2935CSAL_2970CSAL_2971CSAL_2969CSAL_2981
CRUT413404 RMAG_0354RMAG_0993RMAG_0994RMAG_0332RMAG_0801
CPSY167879 CPS_0181CPS_0213CPS_0210CPS_0209CPS_0212CPS_0182
CJAP155077 CJA_3526CJA_3503CJA_3514CJA_3515CJA_3505CJA_3523
CEFF196164 CE1441CE0942CE0943CE1975CE1724
CAULO CC1581CC2459CC0661CC3707CC3712
BVIE269482 BCEP1808_3181BCEP1808_2912BCEP1808_2581BCEP1808_2580BCEP1808_2903BCEP1808_2592
BTHA271848 BTH_I0158BTH_I0469BTH_I0779BTH_I0780BTH_I0479BTH_I0768
BSP36773 BCEP18194_A6449BCEP18194_A6137BCEP18194_A5835BCEP18194_A5834BCEP18194_A6128BCEP18194_A5846
BPSE320373 BURPS668_0183BURPS668_0564BURPS668_0977BURPS668_0978BURPS668_0574BURPS668_0965
BPSE320372 BURPS1710B_A0402BURPS1710B_A0790BURPS1710B_A1191BURPS1710B_A1192BURPS1710B_A0800BURPS1710B_A1179
BPSE272560 BPSL0198BPSL0516BPSL0915BPSL0916BPSL0526BPSL0904
BPET94624 BPET0432BPET3973BPET3314BPET3313BPET4006BPET2816
BPER257313 BP0381BP3471BP2050BP2051BP3129BP1751
BPAR257311 BPP4049BPP0847BPP1736BPP1737BPP0813BPP1982
BMAL320389 BMA10247_3440BMA10247_2925BMA10247_2101BMA10247_2100BMA10247_2935BMA10247_2114
BMAL320388 BMASAVP1_A2908BMASAVP1_A0093BMASAVP1_A2648BMASAVP1_A2647BMASAVP1_A0083BMASAVP1_A2660
BMAL243160 BMA_3247BMA_3125BMA_2232BMA_2231BMA_3115BMA_2244
BJAP224911 BLL4693BSR5117BLR0162BLR0762BLL0759
BCIC186490 BCI_0176BCI_0178BCI_0179BCI_0177BCI_0183
BCEN331272 BCEN2424_3098BCEN2424_2807BCEN2424_2503BCEN2424_2502BCEN2424_2798BCEN2424_2514
BCEN331271 BCEN_2484BCEN_2193BCEN_1892BCEN_1891BCEN_2184BCEN_1903
BBRO257310 BB4522BB0941BB3372BB3371BB0897BB2170
BAMY326423 RBAM_014880RBAM_022140RBAM_015650RBAM_026120RBAM_015530
BAMB398577 BAMMC406_3007BAMMC406_2725BAMMC406_2421BAMMC406_2420BAMMC406_2716BAMMC406_2432
BAMB339670 BAMB_3145BAMB_2867BAMB_2550BAMB_2549BAMB_2858BAMB_2561
ASP76114 EBA6247EBA1397EBC6EBA4482EBA1401EBA838
ASP62977 ACIAD2893ACIAD0501ACIAD0502ACIAD0707ACIAD3125
ASP62928 AZO0762AZO1135AZO1136AZO0759AZO1138
ASP232721 AJS_0589AJS_3516AJS_3385AJS_3384AJS_0899AJS_1001
ASAL382245 ASA_4232ASA_4223ASA_4227ASA_4228ASA_4225ASA_4230
APLE434271 APJL_2014APJL_1152APJL_2019APJL_2018APJL_2038APJL_2016
APLE416269 APL_1967APL_1133APL_1972APL_1971APL_1990APL_1969
AHYD196024 AHA_0157AHA_0166AHA_0162AHA_0161AHA_0164AHA_0159
AFER243159 AFE_0351AFE_0436AFE_0435AFE_0348AFE_2675
AEHR187272 MLG_1059MLG_2655MLG_2642MLG_2641MLG_2649MLG_2847
ACRY349163 ACRY_1178ACRY_0039ACRY_2702ACRY_1723ACRY_1725
ABOR393595 ABO_0209ABO_0081ABO_0216ABO_0215ABO_2583ABO_0213
ABAU360910 BAV3169BAV0563BAV2486BAV2485BAV0533BAV1409
AAVE397945 AAVE_4136AAVE_3869AAVE_3429AAVE_3428AAVE_3606AAVE_1328


Organism features enriched in list (features available for 206 out of the 221 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 8.033e-61592
Arrangment:Clusters 0.0051466117
Disease:Bubonic_plague 0.001855666
Disease:Dysentery 0.001855666
Disease:Gastroenteritis 0.00213341013
Disease:Tularemia 0.005336155
Endospores:No 5.421e-748211
Endospores:Yes 0.0000301653
GC_Content_Range4:0-40 5.725e-2521213
GC_Content_Range4:40-60 0.000266298224
GC_Content_Range4:60-100 1.327e-1287145
GC_Content_Range7:30-40 2.117e-1421166
GC_Content_Range7:50-60 0.000012257107
GC_Content_Range7:60-70 1.005e-1384134
Genome_Size_Range5:0-2 1.005e-1813155
Genome_Size_Range5:2-4 4.537e-841197
Genome_Size_Range5:4-6 3.946e-25121184
Genome_Size_Range5:6-10 6.262e-63147
Genome_Size_Range9:0-1 0.0000870127
Genome_Size_Range9:1-2 6.099e-1412128
Genome_Size_Range9:2-3 1.076e-621120
Genome_Size_Range9:4-5 2.573e-116396
Genome_Size_Range9:5-6 1.647e-105888
Genome_Size_Range9:6-8 0.00001442638
Gram_Stain:Gram_Neg 1.050e-23173333
Gram_Stain:Gram_Pos 1.642e-1318150
Habitat:Multiple 0.002310077178
Habitat:Specialized 0.0004210853
Motility:No 0.001304839151
Motility:Yes 1.162e-7124267
Optimal_temp.:- 0.0072953103257
Oxygen_Req:Aerobic 0.000025887185
Oxygen_Req:Anaerobic 3.385e-146102
Oxygen_Req:Facultative 0.000197590201
Pathogenic_in:No 0.003369566226
Pathogenic_in:Plant 0.00230131115
Shape:Coccus 3.552e-11582
Shape:Rod 2.820e-20173347
Shape:Sphere 0.0023376119
Shape:Spiral 0.0002639334
Temp._range:Mesophilic 0.0025940179473
Temp._range:Psychrophilic 0.009910379
Temp._range:Thermophilic 0.0001819335



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 88
Effective number of orgs (counting one per cluster within 468 clusters): 82

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.0
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFEL264202 ncbi Chlamydophila felis Fe/C-561
BXEN266265 ncbi Burkholderia xenovorans LB4000
BLON206672 ncbi Bifidobacterium longum NCC27050
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  EG11191   EG11190   EG10891   EG10886   EG10329   EG10004   
UURE95667 UU413
UURE95664 UUR10_0458
UPAR505682 UPA3_0431
UMET351160
TVOL273116
TPET390874 TPET_0188
TPEN368408
TPAL243276 TP_0234
TMAR243274 TM_0741
TKOD69014
TDEN243275
TACI273075
STOK273063
SSOL273057
SMUT210007 SMU_1614
SMAR399550
SACI330779
RALB246199 GRAORF_3948
RAKA293614 A1C_06800
PTOR263820
PSP117
PISL384616
PHOR70601
PFUR186497
PAST100379 PAM674
PARS340102
PAER178306
PABY272844
NSEN222891 NSE_0257
NPHA348780
MTHE349307
MTHE187420
MSYN262723 MS53_0066
MSTA339860
MSED399549
MPUL272635 MYPU_6960
MPNE272634
MPEN272633
MMYC272632
MMOB267748 MMOB4150
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358 MHP259
MHYO262722 MHP7448_0122
MHYO262719 MHJ_0118
MHUN323259
MGEN243273
MCAP340047
MBUR259564
MBAR269797
MART243272 MART0004
MAEO419665
MACE188937
LSPH444177 BSPH_1414
LINT363253 LI0282
LDEL390333 LDB1511
LDEL321956 LBUL_1406
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
HACI382638 HAC_1735
CSUL444179 SMGWSS_050
CPHY357809 CPHY_1322
CMET456442
CMAQ397948
CKOR374847
CHOM360107 CHAB381_0923
CFEL264202 CF0552
BXEN266265
BLON206672
BGAR290434 BG0398
BBUR224326 BB_0396
BAFZ390236 BAPKO_0412
AYEL322098 AYWB_067
AURANTIMONAS
APER272557
AFUL224325


Organism features enriched in list (features available for 82 out of the 88 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.003512059
Arrangment:Chains 0.0084934692
Arrangment:Singles 0.000917653286
Endospores:No 1.619e-1360211
Endospores:Yes 0.0097110253
GC_Content_Range4:0-40 0.002583641213
GC_Content_Range4:60-100 0.00048679145
GC_Content_Range7:0-30 0.00004471747
GC_Content_Range7:60-70 0.00168989134
Genome_Size_Range5:0-2 4.336e-1654155
Genome_Size_Range5:4-6 1.844e-86184
Genome_Size_Range5:6-10 0.0049424147
Genome_Size_Range9:0-1 1.611e-61427
Genome_Size_Range9:1-2 3.445e-940128
Genome_Size_Range9:3-4 0.0059044477
Genome_Size_Range9:4-5 0.0019788596
Genome_Size_Range9:5-6 8.391e-6188
Gram_Stain:Gram_Neg 1.060e-725333
Gram_Stain:Gram_Pos 5.038e-66150
Habitat:Aquatic 0.00202002291
Habitat:Multiple 2.994e-77178
Habitat:Specialized 8.088e-72153
Optimal_temp.:- 0.000105221257
Optimal_temp.:100 0.002695433
Optimal_temp.:35-40 0.002695433
Optimal_temp.:42 0.002695433
Optimal_temp.:80 0.002695433
Optimal_temp.:85 0.000367144
Oxygen_Req:Aerobic 0.000262713185
Oxygen_Req:Anaerobic 2.290e-1138102
Pathogenic_in:Human 0.000022314213
Pathogenic_in:No 0.000271246226
Salinity:Extreme_halophilic 0.000780157
Shape:Irregular_coccus 5.412e-121517
Shape:Rod 8.208e-1122347
Shape:Sphere 1.199e-101519
Temp._range:Hyperthermophilic 5.031e-141923
Temp._range:Mesophilic 5.701e-749473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461820.6502
PWY-4041 (γ-glutamyl cycle)2791920.6276
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181650.6167
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951510.5920
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392080.5911
PWY-5918 (heme biosynthesis I)2721830.5852
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001920.5746
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961900.5710
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911880.5701
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861860.5692
AST-PWY (arginine degradation II (AST pathway))1201090.5652
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251590.5531
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901850.5524
TYRFUMCAT-PWY (tyrosine degradation I)1841400.5496
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291970.5396
PWY-1269 (CMP-KDO biosynthesis I)3251950.5354
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831360.5236
PWY-5148 (acyl-CoA hydrolysis)2271550.5192
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911380.5111
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001820.5075
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491170.5045
PWY-5913 (TCA cycle variation IV)3011810.4983
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481960.4902
PWY-5386 (methylglyoxal degradation I)3051810.4886
P344-PWY (acrylonitrile degradation)2101420.4791
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491580.4772
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491580.4772
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381080.4770
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911330.4748
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351060.4732
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222150.4686
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742010.4680
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982080.4667
GLUCONSUPER-PWY (D-gluconate degradation)2291480.4646
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81750.4615
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551580.4609
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651970.4599
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111770.4474
PWY-5340 (sulfate activation for sulfonation)3852010.4449
GALACTITOLCAT-PWY (galactitol degradation)73680.4392
GLUCARDEG-PWY (D-glucarate degradation I)1521100.4381
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162090.4376
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891670.4338
PWY0-981 (taurine degradation IV)106860.4321
VALDEG-PWY (valine degradation I)2901670.4313
LIPASYN-PWY (phospholipases)2121360.4305
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761200.4290
PWY-561 (superpathway of glyoxylate cycle)1621130.4247
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121350.4234
GLYOXYLATE-BYPASS (glyoxylate cycle)1691160.4229
DAPLYSINESYN-PWY (lysine biosynthesis I)3421840.4226
REDCITCYC (TCA cycle variation II)1741180.4208
PWY-5028 (histidine degradation II)130970.4201
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261780.4189
GLUT-REDOX-PWY (glutathione redox reactions II)2461480.4169
CATECHOL-ORTHO-CLEAVAGE-PWY (catechol degradation to β-ketoadipate)103810.4016



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11190   EG10891   EG10886   EG10329   EG10004   
EG111910.9985140.9991550.9992080.9989410.99934
EG111900.9985470.9987250.9995860.998931
EG108910.9999290.9989070.999391
EG108860.9989670.999597
EG103290.999368
EG10004



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PAIRWISE BLAST SCORES:

  EG11191   EG11190   EG10891   EG10886   EG10329   EG10004   
EG111910.0f0-----
EG11190-0.0f0----
EG10891--0.0f0---
EG10886---0.0f0--
EG10329----0.0f0-
EG10004-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3962 (50S ribosomal subunit) (degree of match pw to cand: 0.057, degree of match cand to pw: 0.333, average score: 0.746)
  Genes in pathway or complex:
             0.7274 0.2302 EG11232 (rpmJ) EG11232-MONOMER (50S ribosomal subunit protein L36)
             0.0263 0.0254 EG11231 (rpmI) EG11231-MONOMER (50S ribosomal subunit protein L35)
             0.9815 0.9309 EG10892 (rpmH) EG10892-MONOMER (50S ribosomal subunit protein L34)
   *in cand* 0.9993 0.9985 EG10891 (rpmG) EG10891-MONOMER (50S ribosomal subunit protein L33)
             0.2716 0.0018 EG10890 (rpmF) EG10890-MONOMER (50S ribosomal subunit protein L32)
             0.9192 0.6996 EG10889 (rpmE) EG10889-MONOMER (50S ribosomal subunit protein L31)
             0.8348 0.3950 EG10888 (rpmD) EG10888-MONOMER (50S ribosomal subunit protein L30)
             0.8502 0.3450 EG10887 (rpmC) EG10887-MONOMER (50S ribosomal subunit protein L29)
   *in cand* 0.9994 0.9987 EG10886 (rpmB) EG10886-MONOMER (50S ribosomal subunit protein L28)
             0.8119 0.5249 EG50002 (rpmA) EG50002-MONOMER (50S ribosomal subunit protein L27)
             0.3817 0.0024 EG10885 (rplY) EG10885-MONOMER (50S ribosomal subunit protein L25)
             0.8540 0.4801 EG10884 (rplX) EG10884-MONOMER (50S ribosomal subunit protein L24)
             0.8692 0.5030 EG10883 (rplW) EG10883-MONOMER (50S ribosomal subunit protein L23)
             0.8363 0.4173 EG10882 (rplV) EG10882-MONOMER (50S ribosomal subunit protein L22)
             0.8747 0.6780 EG50001 (rplU) EG50001-MONOMER (50S ribosomal subunit protein L21)
             0.3257 0.0008 EG10881 (rplT) EG10881-MONOMER (50S ribosomal subunit protein L20)
             0.7152 0.0519 EG10880 (rplS) EG10880-MONOMER (50S ribosomal subunit protein L19)
             0.7611 0.2548 EG10879 (rplR) EG10879-MONOMER (50S ribosomal subunit protein L18)
             0.8674 0.5344 EG10878 (rplQ) EG10878-MONOMER (50S ribosomal subunit protein L17)
             0.8136 0.4334 EG10877 (rplP) EG10877-MONOMER (50S ribosomal subunit protein L16)
             0.9039 0.6345 EG10876 (rplO) EG10876-MONOMER (50S ribosomal subunit protein L15)
             0.8134 0.2284 EG10875 (rplN) EG10875-MONOMER (50S ribosomal subunit protein L14)
             0.5346 0.1692 EG10874 (rplM) EG10874-MONOMER (50S ribosomal subunit protein L13)
             0.7612 0.1392 EG10872 (rplK) EG10872-MONOMER (50S ribosomal subunit protein L11)
             0.4897 0.1425 EG10870 (rplI) EG10870-MONOMER (50S ribosomal subunit protein L9)
             0.7371 0.1221 EG10871 (rplJ) EG10871-MONOMER (50S ribosomal subunit protein L10)
             0.7514 0.2003 EG10873 (rplL) MONOMER0-2811 (50S ribosomal subunit protein L7)
             0.7973 0.3420 EG10869 (rplF) EG10869-MONOMER (50S ribosomal subunit protein L6)
             0.7874 0.2600 EG10868 (rplE) EG10868-MONOMER (50S ribosomal subunit protein L5)
             0.8093 0.2516 EG10867 (rplD) EG10867-MONOMER (50S ribosomal subunit protein L4)
             0.7893 0.2051 EG10866 (rplC) EG10866-MONOMER (50S ribosomal subunit protein L3)
             0.8090 0.1946 EG10865 (rplB) EG10865-MONOMER (50S ribosomal subunit protein L2)
             0.8128 0.2200 EG10864 (rplA) EG10864-MONOMER (50S ribosomal subunit protein L1)
                NIL    NIL EG30070 (rrfA) RRFA-RRNA (5S ribosomal RNA (rrfA))
                NIL    NIL EG30077 (rrlA) RRLA-RRNA (23S ribosomal RNA (rrlA))
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG10004 (dfp) EG10004-MONOMER (Dfp)
   *in cand* 0.9993 0.9989 EG10329 (mutM) EG10329-MONOMER (formamidopyrimidine DNA glycosylase)
   *in cand* 0.9991 0.9985 EG11190 (coaD) PANTEPADENYLYLTRAN-MONOMER (pantetheine-phosphate adenylyltransferase monomer)
   *in cand* 0.9992 0.9985 EG11191 (slmA) EG11191-MONOMER (cell division inhibitor)

- COA-PWY (coenzyme A biosynthesis) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.333, average score: 0.885)
  Genes in pathway or complex:
   *in cand* 0.9991 0.9985 EG11190 (coaD) PANTEPADENYLYLTRAN-MONOMER (pantetheine-phosphate adenylyltransferase monomer)
             0.7962 0.4301 EG12312 (coaE) EG12312-MONOMER (dephospho-CoA kinase)
   *in cand* 0.9994 0.9989 EG10004 (dfp) EG10004-MONOMER (Dfp)
             0.9751 0.9469 EG10922 (coaA) PANTOTHENATE-KIN-MONOMER (pantothenate kinase monomer)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9989 EG10329 (mutM) EG10329-MONOMER (formamidopyrimidine DNA glycosylase)
   *in cand* 0.9994 0.9987 EG10886 (rpmB) EG10886-MONOMER (50S ribosomal subunit protein L28)
   *in cand* 0.9993 0.9985 EG10891 (rpmG) EG10891-MONOMER (50S ribosomal subunit protein L33)
   *in cand* 0.9992 0.9985 EG11191 (slmA) EG11191-MONOMER (cell division inhibitor)

- CPLX0-3964 (ribosome) (degree of match pw to cand: 0.034, degree of match cand to pw: 0.333, average score: 0.685)
  Genes in pathway or complex:
                NIL    NIL EG30077 (rrlA) RRLA-RRNA (23S ribosomal RNA (rrlA))
                NIL    NIL EG30070 (rrfA) RRFA-RRNA (5S ribosomal RNA (rrfA))
             0.8128 0.2200 EG10864 (rplA) EG10864-MONOMER (50S ribosomal subunit protein L1)
             0.8090 0.1946 EG10865 (rplB) EG10865-MONOMER (50S ribosomal subunit protein L2)
             0.7893 0.2051 EG10866 (rplC) EG10866-MONOMER (50S ribosomal subunit protein L3)
             0.8093 0.2516 EG10867 (rplD) EG10867-MONOMER (50S ribosomal subunit protein L4)
             0.7874 0.2600 EG10868 (rplE) EG10868-MONOMER (50S ribosomal subunit protein L5)
             0.7973 0.3420 EG10869 (rplF) EG10869-MONOMER (50S ribosomal subunit protein L6)
             0.7514 0.2003 EG10873 (rplL) MONOMER0-2811 (50S ribosomal subunit protein L7)
             0.7371 0.1221 EG10871 (rplJ) EG10871-MONOMER (50S ribosomal subunit protein L10)
             0.4897 0.1425 EG10870 (rplI) EG10870-MONOMER (50S ribosomal subunit protein L9)
             0.7612 0.1392 EG10872 (rplK) EG10872-MONOMER (50S ribosomal subunit protein L11)
             0.5346 0.1692 EG10874 (rplM) EG10874-MONOMER (50S ribosomal subunit protein L13)
             0.8134 0.2284 EG10875 (rplN) EG10875-MONOMER (50S ribosomal subunit protein L14)
             0.9039 0.6345 EG10876 (rplO) EG10876-MONOMER (50S ribosomal subunit protein L15)
             0.8136 0.4334 EG10877 (rplP) EG10877-MONOMER (50S ribosomal subunit protein L16)
             0.8674 0.5344 EG10878 (rplQ) EG10878-MONOMER (50S ribosomal subunit protein L17)
             0.7611 0.2548 EG10879 (rplR) EG10879-MONOMER (50S ribosomal subunit protein L18)
             0.7152 0.0519 EG10880 (rplS) EG10880-MONOMER (50S ribosomal subunit protein L19)
             0.3257 0.0008 EG10881 (rplT) EG10881-MONOMER (50S ribosomal subunit protein L20)
             0.8747 0.6780 EG50001 (rplU) EG50001-MONOMER (50S ribosomal subunit protein L21)
             0.8363 0.4173 EG10882 (rplV) EG10882-MONOMER (50S ribosomal subunit protein L22)
             0.8692 0.5030 EG10883 (rplW) EG10883-MONOMER (50S ribosomal subunit protein L23)
             0.8540 0.4801 EG10884 (rplX) EG10884-MONOMER (50S ribosomal subunit protein L24)
             0.3817 0.0024 EG10885 (rplY) EG10885-MONOMER (50S ribosomal subunit protein L25)
             0.8119 0.5249 EG50002 (rpmA) EG50002-MONOMER (50S ribosomal subunit protein L27)
   *in cand* 0.9994 0.9987 EG10886 (rpmB) EG10886-MONOMER (50S ribosomal subunit protein L28)
             0.8502 0.3450 EG10887 (rpmC) EG10887-MONOMER (50S ribosomal subunit protein L29)
             0.8348 0.3950 EG10888 (rpmD) EG10888-MONOMER (50S ribosomal subunit protein L30)
             0.9192 0.6996 EG10889 (rpmE) EG10889-MONOMER (50S ribosomal subunit protein L31)
             0.2716 0.0018 EG10890 (rpmF) EG10890-MONOMER (50S ribosomal subunit protein L32)
   *in cand* 0.9993 0.9985 EG10891 (rpmG) EG10891-MONOMER (50S ribosomal subunit protein L33)
             0.9815 0.9309 EG10892 (rpmH) EG10892-MONOMER (50S ribosomal subunit protein L34)
             0.0263 0.0254 EG11231 (rpmI) EG11231-MONOMER (50S ribosomal subunit protein L35)
             0.7274 0.2302 EG11232 (rpmJ) EG11232-MONOMER (50S ribosomal subunit protein L36)
                NIL    NIL EG30084 (rrsA) RRSA-RRNA (16S ribosomal RNA (rrsA))
             0.3187 0.0015 EG10900 (rpsA) EG10900-MONOMER (30S ribosomal subunit protein S1)
             0.4992 0.1022 EG10901 (rpsB) EG10901-MONOMER (30S ribosomal subunit protein S2)
             0.7906 0.2437 EG10902 (rpsC) EG10902-MONOMER (30S ribosomal subunit protein S3)
             0.8858 0.5880 EG10903 (rpsD) EG10903-MONOMER (30S ribosomal subunit protein S4)
             0.8266 0.3327 EG10904 (rpsE) EG10904-MONOMER (30S ribosomal subunit protein S5)
             0.5105 0.1376 EG10905 (rpsF) EG10905-MONOMER (30S ribosomal subunit protein S6)
             0.7535 0.1500 EG10906 (rpsG) EG10906-MONOMER (30S ribosomal subunit protein S7)
             0.7995 0.3586 EG10907 (rpsH) EG10907-MONOMER (30S ribosomal subunit protein S8)
             0.5395 0.1061 EG10908 (rpsI) EG10908-MONOMER (30S ribosomal subunit protein S9)
             0.7973 0.1758 EG10909 (rpsJ) EG10909-MONOMER (30S ribosomal subunit protein S10)
             0.7859 0.2615 EG10910 (rpsK) EG10910-MONOMER (30S ribosomal subunit protein S11)
             0.7702 0.1850 EG10911 (rpsL) EG10911-MONOMER (30S ribosomal subunit protein S12)
             0.8369 0.4945 EG10912 (rpsM) EG10912-MONOMER (30S ribosomal subunit protein S13)
             0.9453 0.7971 EG10913 (rpsN) EG10913-MONOMER (30S ribosomal subunit protein S14)
             0.7141 0.0568 EG10914 (rpsO) EG10914-MONOMER (30S ribosomal subunit protein S15)
             0.7670 0.1653 EG10915 (rpsP) EG10915-MONOMER (30S ribosomal subunit protein S16)
             0.8250 0.3214 EG10916 (rpsQ) EG10916-MONOMER (30S ribosomal subunit protein S17)
             0.4841 0.1948 EG10917 (rpsR) EG10917-MONOMER (30S ribosomal subunit protein S18)
             0.7890 0.2141 EG10918 (rpsS) EG10918-MONOMER (30S ribosomal subunit protein S19)
             0.7807 0.1203 EG10919 (rpsT) EG10919-MONOMER (30S ribosomal subunit protein S20)
             0.8549 0.5934 EG10920 (rpsU) EG10920-MONOMER (30S ribosomal subunit protein S21)
             0.0315 0.0313 EG11508 (sra) EG11508-MONOMER (30S ribosomal subunit protein S22)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG10004 (dfp) EG10004-MONOMER (Dfp)
   *in cand* 0.9993 0.9989 EG10329 (mutM) EG10329-MONOMER (formamidopyrimidine DNA glycosylase)
   *in cand* 0.9991 0.9985 EG11190 (coaD) PANTEPADENYLYLTRAN-MONOMER (pantetheine-phosphate adenylyltransferase monomer)
   *in cand* 0.9992 0.9985 EG11191 (slmA) EG11191-MONOMER (cell division inhibitor)

- PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I) (degree of match pw to cand: 0.250, degree of match cand to pw: 0.333, average score: 0.790)
  Genes in pathway or complex:
             0.7037 0.5091 EG11675 (panB) 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-MONOMER (3-methyl-2-oxobutanoate hydroxymethyltransferase monomer)
             0.5570 0.1184 G6239 (panE) 2-DEHYDROPANTOATE-REDUCT-MONOMER (2-dehydropantoate 2-reductase)
             0.5676 0.1901 EG11746 (panC) PANTOATE-BETA-ALANINE-LIG-MONOMER (pantothenate synthetase monomer)
             0.9751 0.9469 EG10922 (coaA) PANTOTHENATE-KIN-MONOMER (pantothenate kinase monomer)
   *in cand* 0.9994 0.9989 EG10004 (dfp) EG10004-MONOMER (Dfp)
             0.7962 0.4301 EG12312 (coaE) EG12312-MONOMER (dephospho-CoA kinase)
   *in cand* 0.9991 0.9985 EG11190 (coaD) PANTEPADENYLYLTRAN-MONOMER (pantetheine-phosphate adenylyltransferase monomer)
             0.5840 0.2708 EG11747 (panD) MONOMER0-1843 (PanD β cleavage product)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9989 EG10329 (mutM) EG10329-MONOMER (formamidopyrimidine DNA glycosylase)
   *in cand* 0.9994 0.9987 EG10886 (rpmB) EG10886-MONOMER (50S ribosomal subunit protein L28)
   *in cand* 0.9993 0.9985 EG10891 (rpmG) EG10891-MONOMER (50S ribosomal subunit protein L33)
   *in cand* 0.9992 0.9985 EG11191 (slmA) EG11191-MONOMER (cell division inhibitor)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10004 EG10329 EG10886 EG10891 EG11190 EG11191 (centered at EG10886)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11191   EG11190   EG10891   EG10886   EG10329   EG10004   
145/623419/623375/623412/623410/623419/623
AAEO224324:0:Tyes13660---394
AAUR290340:2:Tyes--01--
AAVE397945:0:Tyes275824952067206622380
ABAC204669:0:Tyes-0--33213230
ABAU360910:0:Tyes264531196219610879
ABOR393595:0:Tyes12801351342544132
ABUT367737:0:Tyes-0923824--
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