CANDIDATE ID: 516

CANDIDATE ID: 516

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9933050e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7502 (guaD) (b2883)
   Products of gene:
     - G7502-MONOMER (guanine deaminase)
       Reactions:
        guanine + H2O  ->  ammonia + xanthine
         In pathways
         P165-PWY (P165-PWY)
         P121-PWY (P121-PWY)
         PWY-5043 (PWY-5043)
         SALVPURINE2-PWY (salvage pathways of guanine, xanthine, and their nucleosides)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)

- G7500 (xdhD) (b2881)
   Products of gene:
     - G7500-MONOMER (putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage)
     - CPLX0-1841 (putative selenate reductase)
       Reactions:
        selenate + a reduced electron acceptor  ->  selenite + an oxidized electron acceptor + H2O

- G7494 (yqeB) (b2875)
   Products of gene:
     - G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)

- G7486 (xdhB) (b2867)
   Products of gene:
     - G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)

- G7485 (xdhA) (b2866)
   Products of gene:
     - G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 189
Effective number of orgs (counting one per cluster within 468 clusters): 149

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
TTUR377629 ncbi Teredinibacter turnerae T79014
TROS309801 ncbi Thermomicrobium roseum DSM 51594
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STOK273063 ncbi Sulfolobus tokodaii 75
SSP644076 Silicibacter sp. TrichCH4B5
SSP292414 ncbi Ruegeria sp. TM10405
SSON300269 ncbi Shigella sonnei Ss0465
SSOL273057 ncbi Sulfolobus solfataricus P25
SPRO399741 ncbi Serratia proteamaculans 5685
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SMAR399550 ncbi Staphylothermus marinus F15
SLAC55218 Ruegeria lacuscaerulensis5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2274
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6394
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99415
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP357808 ncbi Roseiflexus sp. RS-15
RSP101510 ncbi Rhodococcus jostii RHA15
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1145
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMOB403833 ncbi Petrotoga mobilis SJ955
PMEN399739 ncbi Pseudomonas mendocina ymp5
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135144
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PAER178306 ncbi Pyrobaculum aerophilum IM24
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NSP35761 Nocardioides sp.5
NHAM323097 ncbi Nitrobacter hamburgensis X144
NFAR247156 ncbi Nocardia farcinica IFM 101524
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-15
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSP409 Methylobacterium sp.5
MSP266779 ncbi Chelativorans sp. BNC15
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MSED399549 ncbi Metallosphaera sedula DSM 53485
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MEXT419610 ncbi Methylobacterium extorquens PA15
MABS561007 ncbi Mycobacterium abscessus ATCC 199774
LCHO395495 ncbi Leptothrix cholodnii SP-64
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
JSP375286 ncbi Janthinobacterium sp. Marseille5
JSP290400 ncbi Jannaschia sp. CCS15
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
FSP1855 Frankia sp. EAN1pec5
FALN326424 ncbi Frankia alni ACN14a5
EFAE226185 ncbi Enterococcus faecalis V5834
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DRED349161 ncbi Desulfotomaculum reducens MI-15
DRAD243230 ncbi Deinococcus radiodurans R15
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
CTET212717 ncbi Clostridium tetani E885
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CAULO ncbi Caulobacter crescentus CB154
BXEN266265 ncbi Burkholderia xenovorans LB4004
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPER257313 ncbi Bordetella pertussis Tohama I4
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHAL272558 ncbi Bacillus halodurans C-1255
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASP1667 Arthrobacter sp.5
APER272557 ncbi Aeropyrum pernix K14
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ACRY349163 ncbi Acidiphilium cryptum JF-55
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G7502   G7500   G7494   G7486   G7485   
XCAM487884 XCC-B100_1908XCC-B100_1437XCC-B100_3253XCC-B100_1436
XCAM316273 XCAORF_2541XCAORF_3090XCAORF_1307XCAORF_3091
XCAM314565 XC_1845XC_1388XC_3157XC_1387
XCAM190485 XCC2270XCC2726XCC1092XCC2727
XAXO190486 XAC2378XAC2891XAC1188XAC2893
XAUT78245 XAUT_2741XAUT_1289XAUT_0125XAUT_3759XAUT_1289
VEIS391735 VEIS_1336VEIS_5001VEIS_4534VEIS_5002VEIS_5001
TTUR377629 TERTU_2062TERTU_2065TERTU_2067TERTU_2066
TROS309801 TRD_A0069TRD_A0236TRD_1208TRD_A0069
SWOL335541 SWOL_0781SWOL_1817SWOL_0029SWOL_1819SWOL_1817
STOK273063 ST2049ST1781ST0121ST1783ST1781
SSP644076 SCH4B_0971SCH4B_1343SCH4B_2006SCH4B_2919SCH4B_2920
SSP292414 TM1040_3479TM1040_1765TM1040_0497TM1040_2704TM1040_1705
SSON300269 SSO_3036SSO_3035SSO_3026SSO_3018SSO_3017
SSOL273057 SSO0679SSO2639SSO1292SSO2636SSO2639
SPRO399741 SPRO_2299SPRO_2301SPRO_2302SPRO_2300SPRO_2301
SMEL266834 SMB20849SMB20132SMC00518SMB20130SMB20132
SMED366394 SMED_4625SMED_4003SMED_1482SMED_4005SMED_4003
SMAR399550 SMAR_0381SMAR_0357SMAR_0033SMAR_0355SMAR_0357
SLAC55218 SL1157_2102SL1157_0406SL1157_3074SL1157_0408SL1157_0131
SHAL458817 SHAL_0659SHAL_0657SHAL_0645SHAL_0653SHAL_0657
SFUM335543 SFUM_2961SFUM_2510SFUM_1316SFUM_2010SFUM_2012
SERY405948 SACE_1262SACE_1162SACE_0535SACE_1264SACE_4872
SCO SCO6213SCO4972SCO1131SCO6170SCO2940
SBOY300268 SBO_3119SBO_3109SBO_3118SBO_3119
SAVE227882 SAV2017SAV1536SAV2069SAV2067
SACI330779 SACI_2271SACI_1021SACI_0916SACI_2271
RXYL266117 RXYL_2838RXYL_0112RXYL_0117RXYL_2836RXYL_2839
RSPH349102 RSPH17025_0293RSPH17025_3206RSPH17025_0331RSPH17025_3948RSPH17025_3947
RSPH349101 RSPH17029_0545RSPH17029_1523RSPH17029_0586RSPH17029_3237RSPH17029_3945
RSPH272943 RSP_1896RSP_2877RSP_1935RSP_3554RSP_3206
RSP357808 ROSERS_4317ROSERS_1142ROSERS_0501ROSERS_0342ROSERS_2447
RSP101510 RHA1_RO03824RHA1_RO04506RHA1_RO03494RHA1_RO04975RHA1_RO05013
RSOL267608 RSC2099RSC1468RSC1463RSC2095
RPOM246200 SPO_2956SPO_0830SPO_2394SPO_A0412SPO_0830
RPAL316058 RPB_3957RPB_0955RPB_3677RPB_4416
RPAL316057 RPD_1524RPD_1059RPD_1523RPD_1524
RPAL316056 RPC_1014RPC_4316RPC_1013RPC_1014
RPAL316055 RPE_0590RPE_4368RPE_3215RPE_3213
RPAL258594 RPA0671RPA4634RPA3802RPA0671
RMET266264 RMET_0889RMET_0364RMET_0359RMET_0893RMET_0364
RLEG216596 RL3577PRL80025PRL120299RL3570PRL80025
REUT381666 H16_A1013H16_A3371H16_A0433H16_A3369H16_A3371
REUT264198 REUT_A2429REUT_A3076REUT_C6439REUT_A3074REUT_A3076
RETL347834 RHE_CH03130RHE_CH03126RHE_CH03124RHE_CH03125
RDEN375451 RD1_2008RD1_1533RD1_2976RD1_1532RD1_1533
RCAS383372 RCAS_4181RCAS_3983RCAS_1256RCAS_0841RCAS_3983
PTHE370438 PTH_2359PTH_1538PTH_1534PTH_1540PTH_1538
PSYR223283 PSPTO_3663PSPTO_3661PSPTO_3662PSPTO_3660PSPTO_2863
PSYR205918 PSYR_1812PSYR_1814PSYR_1813PSYR_1815
PSTU379731 PST_3084PST_3082PST_0922PST_3081PST_3082
PSP296591 BPRO_1496BPRO_3394BPRO_0572BPRO_1481BPRO_3394
PPUT76869 PPUTGB1_3845PPUTGB1_3843PPUTGB1_3844PPUTGB1_3842
PPUT351746 PPUT_1587PPUT_1589PPUT_1588PPUT_1590
PPUT160488 PP_4281PP_4279PP_4280PP_4278
PPRO298386 PBPRA1930PBPRA1932PBPRA1985PBPRA2243PBPRA1932
PNAP365044 PNAP_1047PNAP_2695PNAP_2697PNAP_1035PNAP_2695
PMOB403833 PMOB_1736PMOB_1732PMOB_1734PMOB_1738PMOB_1732
PMEN399739 PMEN_2754PMEN_2752PMEN_2753PMEN_2751PMEN_2752
PFLU220664 PFL_1886PFL_1888PFL_1887PFL_1889
PFLU216595 PFLU4595PFLU4593PFLU4594PFLU4592PFLU4593
PFLU205922 PFL_1794PFL_1796PFL_1795PFL_1797PFL_2107
PENT384676 PSEEN1762PSEEN1764PSEEN1763PSEEN1765
PCRY335284 PCRYO_1143PCRYO_1807PCRYO_1806PCRYO_1140PCRYO_1141
PATL342610 PATL_2429PATL_2425PATL_2426PATL_2424
PARS340102 PARS_2021PARS_0253PARS_2023PARS_2021
PAER208964 PA1521PA1523PA1522PA1524
PAER208963 PA14_44770PA14_44740PA14_44760PA14_44710
PAER178306 PAE1935PAE2669PAE1939PAE1935
OCAR504832 OCAR_7367OCAR_5485OCAR_7366OCAR_5616
OANT439375 OANT_0456OANT_0452OANT_0451OANT_0452
NWIN323098 NWI_1079NWI_2200NWI_2204NWI_1079
NSP35761 NOCA_0677NOCA_1634NOCA_0633NOCA_3968NOCA_1634
NHAM323097 NHAM_1307NHAM_2602NHAM_1455NHAM_1454
NFAR247156 NFA52410NFA52390NFA47350NFA52390
MVAN350058 MVAN_5279MVAN_5281MVAN_5182MVAN_5185MVAN_5281
MTHE264732 MOTH_1224MOTH_1960MOTH_2002MOTH_1959MOTH_1960
MSP409 M446_2623M446_4793M446_3532M446_0552M446_1983
MSP266779 MESO_2838MESO_0474MESO_1293MESO_2833MESO_4559
MSP189918 MKMS_4688MKMS_0499MKMS_4690MKMS_0502
MSP164757 MJLS_4983MJLS_0477MJLS_4985MJLS_0480
MSP164756 MMCS_4600MMCS_0488MMCS_4602MMCS_0491
MSME246196 MSMEG_1298MSMEG_1291MSMEG_0743MSMEG_5882MSMEG_1291
MSED399549 MSED_2026MSED_0297MSED_1387MSED_0299MSED_0297
MPET420662 MPE_A0801MPE_A0798MPE_A3412MPE_A0799
MMAG342108 AMB1483AMB0850AMB1484AMB2020
MLOT266835 MLR5142MLL2287MLR0092MLL2291MLL4880
MGIL350054 MFLV_1573MFLV_1574MFLV_1571MFLV_1573
MEXT419610 MEXT_1727MEXT_1728MEXT_1056MEXT_1291MEXT_1728
MABS561007 MAB_2927CMAB_2925CMAB_2924CMAB_2925C
LCHO395495 LCHO_3458LCHO_3461LCHO_1558LCHO_3460
KRAD266940 KRAD_4281KRAD_2075KRAD_2076KRAD_2075
JSP375286 MMA_0504MMA_0506MMA_0764MMA_0507MMA_0774
JSP290400 JANN_2724JANN_3460JANN_2092JANN_2949JANN_2947
HMOD498761 HM1_2689HM1_2648HM1_2638HM1_2647HM1_2648
HMAR272569 PNG7229PNG7246PNG7241PNG7246
GTHE420246 GTNG_0355GTNG_0357GTNG_0354GTNG_0355
GOXY290633 GOX0898GOX0448GOX0654GOX0653
GMET269799 GMET_2136GMET_2138GMET_2134GMET_2136
GKAU235909 GK0379GKP23GKP19GK0379
FSP1855 FRANEAN1_5674FRANEAN1_3211FRANEAN1_6196FRANEAN1_4711FRANEAN1_3211
FALN326424 FRAAL1474FRAAL6161FRAAL3797FRAAL6162FRAAL6161
EFAE226185 EF_2431EF_2570EF_2563EF_2570
ECOO157 YGFPZ4220Z4214YGETZ4205
ECOL83334 ECS3756ECS3754ECS3748ECS3740ECS3739
ECOL585397 ECED1_3343ECED1_3341ECED1_3335ECED1_3327ECED1_3326
ECOL585057 ECIAI39_3298ECIAI39_3296ECIAI39_3290ECIAI39_3282ECIAI39_3281
ECOL585056 ECUMN_3226ECUMN_3224ECUMN_3218ECUMN_3210ECUMN_3209
ECOL585055 EC55989_3170EC55989_3168EC55989_3162EC55989_3154EC55989_3153
ECOL585035 ECS88_3162ECS88_3160ECS88_3154ECS88_3146ECS88_3145
ECOL585034 ECIAI1_3003ECIAI1_3001ECIAI1_2995ECIAI1_2987ECIAI1_2986
ECOL481805 ECOLC_0825ECOLC_0827ECOLC_0833ECOLC_0841ECOLC_0842
ECOL469008 ECBD_0854ECBD_0856ECBD_0862ECBD_0870ECBD_0871
ECOL439855 ECSMS35_3016ECSMS35_3014ECSMS35_3008ECSMS35_3000ECSMS35_2999
ECOL413997 ECB_02716ECB_02714ECB_02708ECB_02700ECB_02699
ECOL409438 ECSE_3147ECSE_3145ECSE_3139ECSE_3131ECSE_3130
ECOL405955 APECO1_3643APECO1_3645APECO1_3651APECO1_3658APECO1_3659
ECOL364106 UTI89_C3268UTI89_C3266UTI89_C3260UTI89_C3252UTI89_C3251
ECOL362663 ECP_2877ECP_2875ECP_2869ECP_2861ECP_2860
ECOL331111 ECE24377A_3209ECE24377A_3207ECE24377A_3200ECE24377A_3192ECE24377A_3191
ECOL316407 ECK2879:JW5466:B2883ECK2877:JW2849:B2881ECK2871:JW2843:B2875ECK2863:JW2835:B2867ECK2862:JW5462:B2866
ECOL199310 C3461C3459C3453C3445C3444
DVUL882 DVU_1825DVU_1559DVU_1552DVU_1559
DSHI398580 DSHI_2771DSHI_4202DSHI_1215DSHI_2958DSHI_4202
DRED349161 DRED_2061DRED_2776DRED_0314DRED_1502DRED_1504
DRAD243230 DR_A0180DR_A0237DR_A0129DR_A0236DR_A0231
DPSY177439 DP3066DP1871DP2533DP2531
DHAF138119 DSY2601DSY0865DSY0869DSY0866DSY1987
DDES207559 DDE_1812DDE_3539DDE_3546DDE_3539
CTET212717 CTC_02226CTC_02477CTC_01880CTC_02475CTC_02477
CSP78 CAUL_3717CAUL_3719CAUL_3718CAUL_3720
CSP501479 CSE45_5029CSE45_2402CSE45_1533CSE45_5033CSE45_2402
CSAL290398 CSAL_1786CSAL_1788CSAL_1787CSAL_1789CSAL_0529
CPSY167879 CPS_4872CPS_4865CPS_4866CPS_4864CPS_4865
CPHY357809 CPHY_1518CPHY_1488CPHY_0059CPHY_1518
CMIC443906 CMM_1917CMM_1912CMM_1914CMM_1912
CMIC31964 CMS1312CMS1318CMS1316CMS1318
CJAP155077 CJA_0551CJA_0547CJA_0548CJA_0546
CHYD246194 CHY_0698CHY_0694CHY_0690CHY_0692
CDIF272563 CD1663CD2099CD3478CD2073
CBOT536232 CLM_2387CLM_1444CLM_3288CLM_1445CLM_1444
CBOT515621 CLJ_B2395CLJ_B1333CLJ_B3146CLJ_B1334CLJ_B1333
CBOT508765 CLL_A1701CLL_A0636CLL_A0644CLL_A0637CLL_A0636
CBOT498213 CLD_2271CLD_3283CLD_1650CLD_3282CLD_3283
CBOT441772 CLI_1370CLI_2948CLI_1371CLI_1370
CBOT441771 CLC_2131CLC_1323CLC_2789CLC_1324CLC_1323
CBOT441770 CLB_2126CLB_1313CLB_2856CLB_1314CLB_1313
CBOT36826 CBO2188CBO1285CBO2892CBO1286CBO1285
CBEI290402 CBEI_1972CBEI_1982CBEI_1980CBEI_1986CBEI_1982
CAULO CC2616CC2618CC3577CC2619
BXEN266265 BXE_C1225BXE_C0035BXE_C0029BXE_B2533
BVIE269482 BCEP1808_0938BCEP1808_3040BCEP1808_3142BCEP1808_0769BCEP1808_0770
BTHA271848 BTH_I1610BTH_I1409BTH_I0207BTH_I1408BTH_I1409
BSUI470137 BSUIS_A0385BSUIS_A0381BSUIS_A0382BSUIS_A0381
BSUI204722 BR_0354BR_0350BR_0349BR_0350
BSP376 BRADO1738BRADO1736BRADO5451BRADO6031BRADO1736
BSP36773 BCEP18194_A4129BCEP18194_A3925BCEP18194_A6406BCEP18194_A3924BCEP18194_A3925
BPSE320373 BURPS668_2918BURPS668_3159BURPS668_0229BURPS668_3160
BPSE320372 BURPS1710B_A3272BURPS1710B_A3480BURPS1710B_A0447BURPS1710B_A3481
BPSE272560 BPSL2541BPSL2727BPSL0237BPSL2728
BPER257313 BP0685BP2128BP0684BP0685
BMEL224914 BMEI1571BMEI1575BMEI1574BMEI1576
BJAP224911 BLR3880BLR6161BLL5660BLL6239BLR6161
BHAL272558 BH0746BH0748BH1974BH0747BH0748
BCLA66692 ABC3327ABC3741ABC3744ABC3742ABC3741
BCER226900 BC_1793BC_3168BC_3165BC_3167BC_3168
BCEN331272 BCEN2424_1018BCEN2424_2953BCEN2424_3057BCEN2424_2954BCEN2424_2953
BCEN331271 BCEN_0539BCEN_2339BCEN_2443BCEN_2340BCEN_2339
BCAN483179 BCAN_A0362BCAN_A0358BCAN_A0359BCAN_A0357BCAN_A0358
BBRO257310 BB0392BB2416BB0390BB0392
BAMY326423 RBAM_037030RBAM_037050RBAM_037020RBAM_037030
BAMB398577 BAMMC406_0893BAMMC406_5518BAMMC406_2968BAMMC406_5517BAMMC406_5518
BAMB339670 BAMB_0881BAMB_5751BAMB_3102BAMB_5750BAMB_5751
ASP76114 EBA4668EBA3603EBA2089EBA2062EBA3603
ASP62928 AZO2223AZO2212AZO0023AZO2211AZO2212
ASP232721 AJS_1129AJS_3103AJS_1125AJS_3102AJS_3103
ASP1667 ARTH_3425ARTH_3420ARTH_3422ARTH_2041ARTH_3420
APER272557 APE0708APE2227APE2219APE2216
AORE350688 CLOS_0374CLOS_0879CLOS_1965CLOS_0877CLOS_0879
AMET293826 AMET_4572AMET_0472AMET_4563AMET_0681AMET_0472
AHYD196024 AHA_2175AHA_2173AHA_2167AHA_2178AHA_2177
AFER243159 AFE_2268AFE_2260AFE_2263AFE_2265
AEHR187272 MLG_0911MLG_1564MLG_1926MLG_1562MLG_1564
ACRY349163 ACRY_1148ACRY_1561ACRY_0474ACRY_2176ACRY_1968
ACEL351607 ACEL_1642ACEL_1631ACEL_1638ACEL_1642
ACAU438753 AZC_4625AZC_4623AZC_1052AZC_2937AZC_4623
ABAU360910 BAV2736BAV3407BAV2738BAV2736
AAVE397945 AAVE_1485AAVE_4011AAVE_1130AAVE_1129
AAUR290340 AAUR_3399AAUR_3394AAUR_3396AAUR_3394


Organism features enriched in list (features available for 174 out of the 189 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Botulism 0.002273555
Disease:Opportunistic_infections 0.002273555
Disease:Urinary_tract_infection 0.007743344
Endospores:No 0.000758947211
Endospores:Yes 0.00038862753
GC_Content_Range4:0-40 2.770e-1721213
GC_Content_Range4:40-60 0.009633656224
GC_Content_Range4:60-100 1.207e-2797145
GC_Content_Range7:30-40 3.680e-1711166
GC_Content_Range7:40-50 3.457e-714117
GC_Content_Range7:50-60 0.006206142107
GC_Content_Range7:60-70 2.108e-2388134
GC_Content_Range7:70-100 0.0004521911
Genome_Size_Range5:0-2 1.040e-252155
Genome_Size_Range5:2-4 0.002241345197
Genome_Size_Range5:4-6 4.612e-1189184
Genome_Size_Range5:6-10 4.865e-143847
Genome_Size_Range9:1-2 4.295e-202128
Genome_Size_Range9:2-3 1.807e-616120
Genome_Size_Range9:4-5 0.00238864096
Genome_Size_Range9:5-6 2.396e-84988
Genome_Size_Range9:6-8 1.053e-113138
Genome_Size_Range9:8-10 0.003510679
Habitat:Host-associated 1.542e-931206
Habitat:Multiple 9.930e-675178
Habitat:Terrestrial 0.00498601631
Motility:No 0.000022826151
Motility:Yes 2.479e-10114267
Optimal_temp.:25-30 5.957e-81719
Oxygen_Req:Aerobic 0.000056675185
Pathogenic_in:Animal 0.00192461066
Pathogenic_in:Human 2.903e-640213
Pathogenic_in:No 0.000056088226
Shape:Coccus 0.00035221282
Shape:Rod 1.629e-10137347
Shape:Spiral 0.0004523234



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 385
Effective number of orgs (counting one per cluster within 468 clusters): 284

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP61
VVUL196600 ncbi Vibrio vulnificus YJ0161
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1141
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT20
STRO369723 ncbi Salinispora tropica CNB-4401
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SLOI323850 ncbi Shewanella loihica PV-40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis1
SGLO343509 ncbi Sodalis glossinidius morsitans1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4760
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B670
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91500
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT180
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty20
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDYS300267 ncbi Shigella dysenteriae Sd1970
SDEN318161 ncbi Shewanella denitrificans OS2170
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT31
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785781
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-11
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans1
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ESP42895 Enterobacter sp.0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10430
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7502   G7500   G7494   G7486   G7485   
ZMOB264203 ZMO0939
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
YENT393305
XORY360094 XOOORF_2009
XORY342109 XOO2549
XORY291331 XOO2703
XFAS405440 XFASM12_1632
XFAS183190 PD_1489
XFAS160492 XF2472
WSUC273121
WPIP955
WPIP80849
VVUL216895 VV1_1303
VVUL196600 VV3062
VPAR223926
VFIS312309 VFA0969
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160 RRC11
TWHI218496
TWHI203267
TVOL273116 TVN0515
TTHE300852
TTHE262724
TTEN273068 TTE1593
TSP28240
TSP1755 TETH514_1885
TPSE340099 TETH39_0875
TPET390874 TPET_1806
TPEN368408 TPEN_0059
TPAL243276
TMAR243274
TLET416591 TLET_0938
TKOD69014 TK0758
TFUS269800 TFU_2587
TERY203124
TELO197221
TDEN326298
TDEN292415 TBD_0947
TDEN243275 TDE_0728
TCRU317025
TACI273075 TA1060
STYP99287
STRO369723 STROP_0081
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321327 CYA_1640
SSP1148
SSP1131
SSED425104
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_1395
SPNE487214 SPH_1487
SPNE487213 SPT_0919
SPNE171101 SPR1214
SPNE170187 SPN05091
SPNE1313 SPJ_1256
SPEA398579 SPEA_3243
SONE211586
SMUT210007
SLOI323850
SHAE279808
SGOR29390 SGO_0280
SGLO343509 SG1471
SEPI176280
SEPI176279
SENT454169
SENT321314
SENT295319
SENT220341
SENT209261
SELO269084
SDYS300267
SDEN318161
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SALA317655
SAGA211110
SAGA208435
SAGA205921
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PSP312153 PNUC_0902
PSP117
PRUM264731
PPEN278197
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PINT246198
PING357804
PHOR70601 PH1515
PHAL326442
PGIN242619 PG_0559
PFUR186497 PF1538
PDIS435591 BDI_1128
PCAR338963 PCAR_0227
PAST100379
PARC259536
PACN267747
PABY272844 PAB0443
OTSU357244
OIHE221109
NSP387092
NSP103690 ALR3749
NSEN222891
NPHA348780 NP0972A
NOCE323261 NOC_2295
NMUL323848 NMUL_A2187
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NEUT335283
NEUR228410
NARO279238
MTHE349307 MTHE_0991
MTHE187420 MTH1505
MSYN262723
MSUC221988
MSTA339860 MSP_0200
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM2279
MMAR444158 MMARC6_1183
MMAR426368 MMARC7_0735
MMAR402880 MMARC5_0086
MMAR394221
MMAR368407 MEMAR_1087
MMAR267377 MMP1491
MLEP272631
MLAB410358 MLAB_1054
MKAN190192 MK0366
MJAN243232 MJ_1541
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2013
MGEN243273
MFLO265311
MCAP340047
MCAP243233 MCA_1273
MBUR259564 MBUR_1182
MBAR269797 MBAR_A3252
MAVI243243
MART243272 MART0486
MAER449447
MAEO419665 MAEO_0556
MACE188937 MA1276
LXYL281090
LWEL386043
LSPH444177 BSPH_1757
LSAK314315
LREU557436
LPNE400673 LPC_1468
LPNE297246 LPP1966
LPNE297245 LPL1960
LPNE272624 LPG1985
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253 LI0478
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_1043
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KPNE272620 GKPORF_B0878
ILOI283942
IHOS453591
HSP64091 VNG1205C
HSOM228400
HSOM205914
HSAL478009 OE2730R
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_2080
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124 HHAL_0574
HDUC233412
HBUT415426
HAUR316274 HAUR_4866
HARS204773 HEAR1181
HACI382638
GVIO251221
GSUL243231 GSU_0202
GBET391165 GBCGDNIH1_0924
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022 FPHI_1291
FNUC190304
FNOD381764
FJOH376686 FJOH_4205
ESP42895
ERUM302409
ERUM254945
ELIT314225 ELI_11215
ECHA205920
ECAR218491
ECAN269484
DSP255470
DSP216389
DOLE96561
DNOD246195
DETH243164
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103 CPF_1475
CPER195102 CPE1267
CPEL335992
CNOV386415 NT01CX_1814
CMUR243161
CMET456442
CMAQ397948
CKOR374847 KCR_1295
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242 CJJ81176_0105
CJEJ195099 CJE_0064
CJEJ192222 CJ0067
CJEI306537
CHUT269798 CHU_2684
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974 DAUD_0651
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_1541
CBUR360115 COXBURSA331_A0634
CBUR227377 CBU_0521
CBLO291272
CBLO203907
CACE272562 CAC0282
CABO218497
BWEI315730 BCERKBAB4_1721
BTUR314724
BTRI382640
BTHU412694 BALH_1643
BTHU281309 BT9727_1707
BTHE226186
BSP107806
BQUI283165
BPUM315750
BLON206672
BLIC279010
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264 BCA_1873
BCER405917 BCE_1951
BCER315749 BCER98_1460
BCER288681 BCE33L1681
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BANT592021 BAA_1934
BANT568206 BAMEG_2726
BANT261594 GBAA1865
BANT260799 BAS1729
BAFZ390236
AYEL322098
AURANTIMONAS
ASAL382245
APLE434271
APLE416269
APHA212042
ANAE240017
AMAR329726 AM1_0249
AMAR234826
ALAI441768
AFUL224325 AF_0997
ABUT367737
ABOR393595 ABO_1752
AAEO224324 AQ_587


Organism features enriched in list (features available for 364 out of the 385 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00308451617
Arrangment:Filaments 0.0065860210
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00530541111
Disease:Wide_range_of_infections 0.00530541111
Endospores:No 0.0003420150211
Endospores:Yes 0.00061962253
GC_Content_Range4:0-40 1.409e-25189213
GC_Content_Range4:60-100 6.461e-3330145
GC_Content_Range7:0-30 0.00641753747
GC_Content_Range7:30-40 7.457e-23152166
GC_Content_Range7:40-50 6.949e-795117
GC_Content_Range7:50-60 0.000047349107
GC_Content_Range7:60-70 2.114e-2730134
Genome_Size_Range5:0-2 1.418e-30150155
Genome_Size_Range5:2-4 0.0003377141197
Genome_Size_Range5:4-6 1.700e-1867184
Genome_Size_Range5:6-10 2.767e-13647
Genome_Size_Range9:0-1 2.055e-62727
Genome_Size_Range9:1-2 3.142e-23123128
Genome_Size_Range9:2-3 1.307e-9102120
Genome_Size_Range9:3-4 0.00759713977
Genome_Size_Range9:4-5 1.235e-73796
Genome_Size_Range9:5-6 3.436e-93088
Genome_Size_Range9:6-8 1.163e-10538
Genome_Size_Range9:8-10 0.002082819
Gram_Stain:Gram_Neg 0.0057197195333
Habitat:Host-associated 1.668e-8159206
Habitat:Multiple 0.000037690178
Habitat:Terrestrial 0.00034661031
Motility:No 0.0001692112151
Motility:Yes 6.313e-8136267
Optimal_temp.:25-30 1.726e-7119
Optimal_temp.:30 0.0039832415
Optimal_temp.:30-37 0.00200801718
Oxygen_Req:Aerobic 1.480e-690185
Oxygen_Req:Anaerobic 0.009836873102
Pathogenic_in:Animal 0.00294365166
Pathogenic_in:Human 0.0000301155213
Pathogenic_in:No 0.0000400119226
Shape:Coccus 0.00023036582
Shape:Irregular_coccus 0.00308451617
Shape:Rod 1.252e-12177347
Shape:Sphere 0.00130181819
Shape:Spiral 0.00010213134



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SMAR399550 ncbi Staphylothermus marinus F1 0.00025032735
STOK273063 ncbi Sulfolobus tokodaii 7 0.00100713605
MSED399549 ncbi Metallosphaera sedula DSM 5348 0.00112483685
SSOL273057 ncbi Sulfolobus solfataricus P2 0.00188934085


Names of the homologs of the genes in the group in each of these orgs
  G7502   G7500   G7494   G7486   G7485   
SMAR399550 SMAR_0381SMAR_0357SMAR_0033SMAR_0355SMAR_0357
STOK273063 ST2049ST1781ST0121ST1783ST1781
MSED399549 MSED_2026MSED_0297MSED_1387MSED_0299MSED_0297
SSOL273057 SSO0679SSO2639SSO1292SSO2636SSO2639


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Habitat:Specialized 0.0000615453
Motility:No 0.00436844151
Optimal_temp.:92 0.006861111
Shape:Coccus 0.0093130382
Temp._range:Hyperthermophilic 0.0002082323



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-3982 (uracil degradation (reductive))1371060.5432
PWY-6430 (thymine degradation)95820.5165
P344-PWY (acrylonitrile degradation)2101260.4601
GLYSYN-THR-PWY (glycine biosynthesis IV)2151250.4390
PWY0-321 (phenylacetate degradation I (aerobic))1551010.4360
GALACTCAT-PWY (D-galactonate degradation)104780.4349
PWY-5697 (allantoin degradation to ureidoglycolate I (urea producing))92710.4241
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121210.4177
PWY-6185 (4-methylcatechol degradation (ortho cleavage))107770.4123
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951130.4054
TRESYN-PWY (trehalose biosynthesis I)1711030.4000



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7500   G7494   G7486   G7485   
G75020.9992170.998890.9992470.998941
G75000.9993320.9996980.999823
G74940.999220.999259
G74860.999678
G7485



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PAIRWISE BLAST SCORES:

  G7502   G7500   G7494   G7486   G7485   
G75020.0f0----
G7500-0.0f0--1.5e-75
G7494--0.0f0--
G7486---0.0f0-
G7485-1.3e-78--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides) (degree of match pw to cand: 0.182, degree of match cand to pw: 0.400, average score: 0.555)
  Genes in pathway or complex:
             0.3578 0.2407 EG10039 (amn) AMP-NUCLEOSID-MONOMER (Amn)
             0.8716 0.7060 EG10051 (apt) ADENPRIBOSYLTRAN-MONOMER (Apt)
             0.3900 0.0942 G85 (xapA) XANTHOSINEPHOSPHORY-MONOMER (XapA)
             0.3459 0.1955 EG10222 (deoD) DEOD-MONOMER (DeoD)
             0.6083 0.2584 EG10030 (add) ADENODEAMIN-MONOMER (deoxyadenosine deaminase / adenosine deaminase)
             0.4676 0.2711 EG11102 (gsk) GSK-MONOMER (Gsk)
             0.9982 0.9931 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
   *in cand* 0.9996 0.9992 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9995 0.9989 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
             0.6574 0.4196 EG20098 (hpt) HYPOXANPRIBOSYLTRAN-MONOMER (hypoxanthine-guanine phosphoribosyltransferase)
             0.3395 0.0661 EG10414 (gpt) GPT-MONOMER (Gpt)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9989 G7494 (yqeB) G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)
   *in cand* 0.9996 0.9992 G7500 (xdhD) G7500-MONOMER (putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage)
   *in cand* 0.9993 0.9989 G7502 (guaD) G7502-MONOMER (guanine deaminase)

- CPLX0-761 (xanthine dehydrogenase) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.400, average score: 1.000)
  Genes in pathway or complex:
             0.9982 0.9931 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
   *in cand* 0.9996 0.9992 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9995 0.9989 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9989 G7494 (yqeB) G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)
   *in cand* 0.9996 0.9992 G7500 (xdhD) G7500-MONOMER (putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage)
   *in cand* 0.9993 0.9989 G7502 (guaD) G7502-MONOMER (guanine deaminase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7485 G7486 (centered at G7486)
G7494 (centered at G7494)
G7500 (centered at G7500)
G7502 (centered at G7502)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7502   G7500   G7494   G7486   G7485   
281/623191/623237/623212/623190/623
AAEO224324:0:Tyes0----
AAUR290340:2:Tyes502-0
AAVE397945:0:Tyes-353282910
ABAC204669:0:Tyes--18970-
ABAU360910:0:Tyes-067720
ABOR393595:0:Tyes0----
ACAU438753:0:Tyes36243622019073622
ACEL351607:0:Tyes-110711
ACRY349163:8:Tyes6721085017081499
ADEH290397:0:Tyes--27910-
AEHR187272:0:Tyes06461003644646
AFER243159:0:Tyes8-035
AFUL224325:0:Tyes0----
AHYD196024:0:Tyes8601110
AMAR329726:9:Tyes--0--
AMET293826:0:Tyes4063040542070
AORE350688:0:Tyes05011611499501
APER272557:0:Tyes-0158315751572
ASP1667:3:Tyes14011396139801396
ASP232721:2:Tyes41903019021903
ASP62928:0:Tyes22482237022362237
ASP62977:0:Tyes1097-02-
ASP76114:2:Tyes1528905140905
AVAR240292:1:Tyes--0-1
AVAR240292:3:Tyes0----
BABO262698:1:Tno51-0-
BAMB339670:1:Tno-1-01
BAMB339670:3:Tno0-2267--
BAMB398577:1:Tno-1-01
BAMB398577:3:Tno0-2101--
BAMY326423:0:Tyes-1301
BANT260799:0:Tno0----
BANT261594:2:Tno0----
BANT568206:2:Tyes0----
BANT592021:2:Tno0----
BBAC264462:0:Tyes--20-
BBRO257310:0:Tyes-2204602
BCAN483179:1:Tno51201
BCEN331271:2:Tno01820192218211820
BCEN331272:3:Tyes01930203419311930
BCER226900:1:Tyes01344134113431344
BCER288681:0:Tno0----
BCER315749:1:Tyes0----
BCER405917:1:Tyes0----
BCER572264:1:Tno0----
BCLA66692:0:Tyes0412415413412
BHAL272558:0:Tyes02125112
BJAP224911:0:Fyes02302180123802302
BMAL243160:1:Tno0-25201380-
BMAL320388:1:Tno1696-20320-
BMAL320389:1:Tyes0-31611698-
BMEL224914:1:Tno0435-
BMEL359391:1:Tno3--0-
BOVI236:1:Tyes3-10-
BPAR257311:0:Tno--9210-
BPER257313:0:Tyes-01282-0
BPET94624:0:Tyes--01494-
BPSE272560:1:Tyes2313250502506-
BPSE320372:1:Tno2706290802909-
BPSE320373:1:Tno2592282102822-
BSP36773:2:Tyes2121252601
BSP376:0:Tyes20352640860
BSUB:0:Tyes-03-0
BSUI204722:1:Tyes51-01
BSUI470137:1:Tno401-0
BTHA271848:1:Tno13851191011901191
BTHU281309:1:Tno0----
BTHU412694:1:Tno0----
BVIE269482:7:Tyes1682250235201
BWEI315730:4:Tyes0----
BXEN266265:0:Tyes-112960-
BXEN266265:1:Tyes----0
CACE272562:1:Tyes0----
CAULO:0:Tyes029763-
CBEI290402:0:Tyes01081410
CBOT36826:1:Tno8890160110
CBOT441770:0:Tyes8020151610
CBOT441771:0:Tno7980143910
CBOT441772:1:Tno-0154110
CBOT498213:1:Tno10030162110
CBOT508765:1:Tyes10540810
CBOT515621:2:Tyes10450178510
CBOT536232:0:Tno9170179210
CBUR227377:1:Tyes0----
CBUR360115:1:Tno0----
CBUR434922:2:Tno0----
CDES477974:0:Tyes0----
CDIF272563:1:Tyes04481835-422
CHUT269798:0:Tyes0----
CHYD246194:0:Tyes9-502
CJAP155077:0:Tyes5120-
CJEJ192222:0:Tyes0----
CJEJ195099:0:Tno0----
CJEJ354242:2:Tyes0----
CKOR374847:0:Tyes0----
CMIC31964:2:Tyes064-6
CMIC443906:2:Tyes502-0
CNOV386415:0:Tyes0----
CPER195102:1:Tyes0----
CPER195103:0:Tno0----
CPHY357809:0:Tyes-1447141701447
CPSY167879:0:Tyes81201
CSAL290398:0:Tyes12811283128212840
CSP501479:4:Fyes0--4-
CSP501479:8:Fyes-8550-855
CSP78:2:Tyes0213-
CTET212717:0:Tyes3135460545546
CVIO243365:0:Tyes0-1137--
DARO159087:0:Tyes0-668--
DDES207559:0:Tyes017551762-1755
DGEO319795:0:Tyes0-13-
DHAF138119:0:Tyes17640411145
DPSY177439:2:Tyes-12190670668
DRAD243230:2:Tyes50103010297
DRED349161:0:Tyes17512477011981200
DSHI398580:0:Tyes-0--0
DSHI398580:5:Tyes1575-01762-
DVUL882:1:Tyes27270-7
ECOL199310:0:Tno1715910
ECOL316407:0:Tno1715910
ECOL331111:6:Tno1816910
ECOL362663:0:Tno1715910
ECOL364106:1:Tno1715910
ECOL405955:2:Tyes1614810
ECOL409438:6:Tyes1715910
ECOL413997:0:Tno1715910
ECOL439855:4:Tno1715910
ECOL469008:0:Tno0281617
ECOL481805:0:Tno0281617
ECOL585034:0:Tno1715910
ECOL585035:0:Tno1715910
ECOL585055:0:Tno1715910
ECOL585056:2:Tno1715910
ECOL585057:0:Tno1715910
ECOL585397:0:Tno1715910
ECOL83334:0:Tno1715910
ECOLI:0:Tno1715910
ECOO157:0:Tno1715910
EFAE226185:3:Tyes0132125-132
EFER585054:1:Tyes--1-0
ELIT314225:0:Tyes--0--
FALN326424:0:Tyes04578228045794578
FJOH376686:0:Tyes--0--
FMAG334413:1:Tyes-093-0
FPHI484022:1:Tyes0----
FSP106370:0:Tyes9-15540-
FSP1855:0:Tyes24230294214630
GBET391165:0:Tyes--0--
GFOR411154:0:Tyes-05-0
GKAU235909:0:Tyes--40-
GKAU235909:1:Tyes-0--0
GMET269799:1:Tyes-2402
GOXY290633:5:Tyes448-0204203
GSUL243231:0:Tyes--0--
GTHE420246:1:Tyes-1301
GURA351605:0:Tyes-07-0
HARS204773:0:Tyes--0--
HAUR316274:2:Tyes0----
HCHE349521:0:Tyes0-68-
HHAL349124:0:Tyes0----
HMAR272569:7:Tyes0159-15
HMOD498761:0:Tyes51100910
HMUK485914:1:Tyes0----
HNEP81032:0:Tyes--021
HSAL478009:4:Tyes0----
HSP64091:2:Tno0----
HWAL362976:1:Tyes102--0-
JSP290400:1:Tyes64313890874872
JSP375286:0:Tyes022673277
KPNE272620:2:Tyes0----
KRAD266940:2:Fyes233110-1
LBRE387344:2:Tyes0----
LCHO395495:0:Tyes1921192401923-
LINT363253:3:Tyes0----
LPNE272624:0:Tno0----
LPNE297245:1:Fno0----
LPNE297246:1:Fyes0----
LPNE400673:0:Tno0----
LSPH444177:1:Tyes0----
MABS561007:1:Tyes310-1
MACE188937:0:Tyes0----
MAEO419665:0:Tyes0----
MAQU351348:2:Tyes1103-0--
MART243272:0:Tyes0----
MBAR269797:1:Tyes0----
MBOV233413:0:Tno--320
MBOV410289:0:Tno--320
MBUR259564:0:Tyes0----
MCAP243233:0:Tyes0----
MEXT419610:0:Tyes6756760232676
MFLA265072:0:Tyes0-1037--
MGIL350054:3:Tyes-2302
MHUN323259:0:Tyes--0--
MJAN243232:2:Tyes0----
MKAN190192:0:Tyes0----
MLAB410358:0:Tyes0----
MLOT266835:2:Tyes39351720017223729
MMAG342108:0:Tyes-63306341170
MMAR267377:0:Tyes0----
MMAR368407:0:Tyes0----
MMAR402880:1:Tyes0----
MMAR426368:0:Tyes0----
MMAR444158:0:Tyes0----
MMAZ192952:0:Tyes0----
MPET420662:1:Tyes3026071-
MSED399549:0:Tyes17110107320
MSME246196:0:Tyes55454705093547
MSP164756:1:Tno-4137041393
MSP164757:0:Tno-4503045053
MSP189918:2:Tyes-4207042093
MSP266779:1:Tyes----0
MSP266779:3:Tyes237408262369-
MSP400668:0:Tyes0-10541056-
MSP409:2:Tyes19644057282801341
MSTA339860:0:Tyes0----
MTBCDC:0:Tno---20
MTBRV:0:Tno--320
MTHE187420:0:Tyes0----
MTHE264732:0:Tyes0720760719720
MTHE349307:0:Tyes0----
MTUB336982:0:Tno--320
MTUB419947:0:Tyes--320
MVAN350058:0:Tyes97990399
MXAN246197:0:Tyes2478-10-
NFAR247156:2:Tyes5135110-511
NHAM323097:2:Tyes-01275145144
NMUL323848:3:Tyes0----
NOCE323261:1:Tyes0----
NPHA348780:2:Tyes0----
NSP103690:6:Tyes0----
NSP35761:1:Tyes461002033431002
NWIN323098:0:Tyes-0113411380
OANT439375:5:Tyes51-01
OCAR504832:0:Tyes-187801877131
PABY272844:0:Tyes0----
PAER178306:0:Tyes-054220
PAER208963:0:Tyes3120-
PAER208964:0:Tno0213-
PARS340102:0:Tyes-1739017411739
PATL342610:0:Tyes5120-
PCAR338963:0:Tyes--0--
PCRY335284:1:Tyes366366201
PDIS435591:0:Tyes0----
PENT384676:0:Tyes0213-
PFLU205922:0:Tyes0213324
PFLU216595:1:Tyes31201
PFLU220664:0:Tyes0213-
PFUR186497:0:Tyes0----
PGIN242619:0:Tyes0----
PHOR70601:0:Tyes0----
PISL384616:0:Tyes-0-40
PMEN399739:0:Tyes31201
PMOB403833:0:Tyes40260
PNAP365044:8:Tyes121670167201670
PPRO298386:2:Tyes02543102
PPUT160488:0:Tno3120-
PPUT351746:0:Tyes0213-
PPUT76869:0:Tno3120-
PSP296591:2:Tyes923280909082809
PSP312153:0:Tyes--0--
PSP56811:2:Tyes-01-0
PSTU379731:0:Tyes21472145021442145
PSYR205918:0:Tyes0213-
PSYR223283:2:Tyes7857837847820
PTHE370438:0:Tyes8294064
PTOR263820:0:Tyes--3940-
RCAS383372:0:Tyes3298310140103101
RDEN375451:4:Tyes4531135101
RETL347834:5:Tyes6-201
REUT264198:1:Tyes--0--
REUT264198:3:Tyes0655-653655
REUT381666:2:Tyes5722857028552857
RFER338969:1:Tyes2429-0--
RLEG216596:0:Tyes-0--0
RLEG216596:5:Tyes--0--
RLEG216596:6:Tyes8--0-
RMET266264:2:Tyes530505345
RPAL258594:0:Tyes-0398831480
RPAL316055:0:Tyes-0374426022600
RPAL316056:0:Tyes-1330701
RPAL316057:0:Tyes-4680467468
RPAL316058:0:Tyes-3019027363476
RPOM246200:0:Tyes---0-
RPOM246200:1:Tyes208301531-0
RRUB269796:1:Tyes-041-
RSOL267608:1:Tyes64850644-
RSP101510:3:Fyes3301006014751513
RSP357808:0:Tyes393379115302084
RSPH272943:3:Tyes---3350
RSPH272943:4:Tyes0100843--
RSPH349101:1:Tno---0713
RSPH349101:2:Tno098342--
RSPH349102:4:Tyes-0-712711
RSPH349102:5:Tyes0-34--
RXYL266117:0:Tyes27130527112714
SACI330779:0:Tyes-130610301306
SACI56780:0:Tyes0-1325--
SARE391037:0:Tyes-10-1
SAVE227882:1:Fyes484-0536534
SBOY300268:1:Tyes-9089
SCO:2:Fyes51383895050951833
SDEG203122:0:Tyes0-568--
SERY405948:0:Tyes71361507154286
SFLE198214:0:Tyes-0-10
SFLE373384:0:Tno-0-10
SFUM335543:0:Tyes162711800685687
SGLO343509:3:Tyes0----
SGOR29390:0:Tyes0----
SHAL458817:0:Tyes14120812
SHIGELLA:0:Tno-0-10
SLAC55218:1:Fyes193527228852740
SMAR399550:0:Tyes3483230321323
SMED366394:2:Tyes6120-20
SMED366394:3:Tyes--0--
SMEL266834:1:Tyes10122-02
SMEL266834:2:Tyes--0--
SPEA398579:0:Tno0----
SPNE1313:0:Tyes0----
SPNE170187:0:Tyes0----
SPNE171101:0:Tno0----
SPNE487213:0:Tno0----
SPNE487214:0:Tno0----
SPNE488221:0:Tno0----
SPRO399741:1:Tyes02312
SSOL273057:0:Tyes0178856617861788
SSON300269:1:Tyes1716810
SSP292414:1:Tyes0----
SSP292414:2:Tyes-1288022421227
SSP321327:0:Tyes0----
SSP321332:0:Tyes1179-0924-
SSP644076:4:Fyes0----
SSP644076:6:Fyes---01
SSP644076:7:Fyes-0651--
STHE292459:0:Tyes0-513--
STOK273063:0:Tyes21091835018371835
STRO369723:0:Tyes0----
SWOL335541:0:Tyes7141727017291727
TACI273075:0:Tyes0----
TDEN243275:0:Tyes---0-
TDEN292415:0:Tyes0----
TFUS269800:0:Tyes---0-
TKOD69014:0:Tyes0----
TLET416591:0:Tyes0----
TPEN368408:1:Tyes0----
TPET390874:0:Tno0----
TPSE340099:0:Tyes0----
TROS309801:0:Tyes-0167-0
TROS309801:1:Tyes---0-
TSP1755:0:Tyes0----
TTEN273068:0:Tyes0----
TTUR377629:0:Tyes0-354
TVOL273116:0:Tyes0----
UMET351160:0:Tyes0----
VEIS391735:1:Tyes03630317236313630
VFIS312309:1:Tyes0----
VVUL196600:2:Tyes0----
VVUL216895:1:Tno0----
XAUT78245:1:Tyes26241167036451167
XAXO190486:0:Tyes1190-170301705
XCAM190485:0:Tyes1178-163401635
XCAM314565:0:Tno459-117720
XCAM316273:0:Tno1212-175301754
XCAM487884:0:Tno477-118370
XFAS160492:2:Tno0----
XFAS183190:1:Tyes0----
XFAS405440:0:Tno0----
XORY291331:0:Tno0----
XORY342109:0:Tyes0----
XORY360094:0:Tno0----
ZMOB264203:0:Tyes0----



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