CANDIDATE ID: 517

CANDIDATE ID: 517

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9916140e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7170 (arnT) (b2257)
   Products of gene:
     - G7170-MONOMER (4-amino-4-deoxy-L-arabinose (L-Ara4N) transferase)
       Reactions:
        KDO2-lipid A[periplasmic space] + 2 4-amino-4-deoxy-beta-L-arabinopyranosyl undecaprenyl phosphate[periplasmic space]  ->  L-Ara4N-modified KDO2-Lipid A[periplasmic space] + 2 di-trans,poly-cis-undecaprenyl phosphate[periplasmic space]

- G7169 (arnD) (b2256)
   Products of gene:
     - G7169-MONOMER (conserved protein)

- G7168 (arnA) (b2255)
   Products of gene:
     - G7168-MONOMER (fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase)
     - CPLX0-7718 (UDP-L-Ara4N formyltransferase / UDP-GlcA C-4"-decarboxylase)
       Reactions:
        UDP-4-amino-4-deoxy-beta-L-arabinopyranose + 10-formyl-tetrahydrofolate  ->  UDP-4-deoxy-4-formamido-beta-L-arabinopyranose + tetrahydrofolate + 3 H+
         In pathways
         PWY0-1338 (biosynthesis of  4-amino-4-deoxy-L-arabinose-modified lipid A)
        UDP-D-glucuronate + NAD+  ->  UDP-beta-L-threo-pentapyranos-4-ulose + CO2 + NADH
         In pathways
         PWY0-1338 (biosynthesis of  4-amino-4-deoxy-L-arabinose-modified lipid A)

- G7167 (arnC) (b2254)
   Products of gene:
     - G7167-MONOMER (undecaprenyl phosphate-L-Ara4FN transferase)
       Reactions:
        UDP-4-deoxy-4-formamido-beta-L-arabinopyranose + di-trans,poly-cis-undecaprenyl phosphate + H+  ->  4-deoxy-4-formamido-beta-L-arabinopyranosyl undecaprenyl phosphate + UDP
         In pathways
         PWY0-1338 (biosynthesis of  4-amino-4-deoxy-L-arabinose-modified lipid A)

- G7166 (arnB) (b2253)
   Products of gene:
     - G7166-MONOMER (UDP-L-Ara4O C-4" transaminase)
       Reactions:
        UDP-4-amino-4-deoxy-beta-L-arabinopyranose + 2-oxoglutarate  =  UDP-beta-L-threo-pentapyranos-4-ulose + L-glutamate
         In pathways
         PWY0-1338 (biosynthesis of  4-amino-4-deoxy-L-arabinose-modified lipid A)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 94
Effective number of orgs (counting one per cluster within 468 clusters): 53

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSP1148 ncbi Synechocystis sp. PCC 68034
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RMET266264 ncbi Ralstonia metallidurans CH345
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PPRO298386 ncbi Photobacterium profundum SS94
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
MCAP243233 ncbi Methylococcus capsulatus Bath4
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf45
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
GFOR411154 ncbi Gramella forsetii KT08034
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AHYD196024 Aeromonas hydrophila dhakensis5
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454


Names of the homologs of the genes in the group in each of these orgs
  G7170   G7169   G7168   G7167   G7166   
YPSE349747 YPSIP31758_1729YPSIP31758_1728YPSIP31758_1727YPSIP31758_1724YPSIP31758_1723
YPSE273123 YPTB2326YPTB2327YPTB2328YPTB2329YPTB2330
YPES386656 YPDSF_0732YPDSF_0731YPDSF_0730YPDSF_0729YPDSF_0728
YPES377628 YPN_1872YPN_1873YPN_1874YPN_1875YPN_1876
YPES360102 YPA_1762YPA_1763YPA_1764YPA_1765YPA_1766
YPES349746 YPANGOLA_A2608YPANGOLA_A2609YPANGOLA_A2610YPANGOLA_A2611YPANGOLA_A2612
YPES214092 YPO2418YPO2419YPO2420YPO2421YPO2422
YPES187410 Y1921Y1920Y1919Y1918Y1917
YENT393305 YE2188YE2189YE2190YE2191YE2192
STYP99287 STM2301STM2300STM2299STM2298STM2297
SSP321332 CYB_1995CYB_1993CYB_1435CYB_1979
SSP321327 CYA_1689CYA_1691CYA_2466CYA_2266
SSP1148 SLR1820SLR0070SLL0501SLR2114
SSON300269 SSO_2318SSO_2317SSO_2316SSO_2315SSO_2314
SSED425104 SSED_0922SSED_0923SSED_0924SSED_0925SSED_0926
SPRO399741 SPRO_2158SPRO_2157SPRO_2156SPRO_2155SPRO_2154
SPEA398579 SPEA_3628SPEA_0030SPEA_3629SPEA_1413
SHIGELLA S2469S2468YBFGS2466S2465
SGLO343509 SG1841SG1842SG1843SG1844SG1845
SFLE373384 SFV_2327SFV_2326SFV_2325SFV_2324SFV_2323
SFLE198214 AAN43850.1AAN43849.1AAN43848.1AAN43847.1AAN43846.1
SENT454169 SEHA_C2541SEHA_C2540SEHA_C2539SEHA_C2538SEHA_C2537
SENT321314 SCH_2302SCH_2301SCH_3343SCH_2300SCH_2299
SENT295319 SPA0562SPA0563SPA0564SPA0565SPA0566
SENT220341 STY2531STY2530STY2529STY2528STY2527
SENT209261 T0562T0563T0564T0565T0566
SDYS300267 SDY_2453SDY_2452SDY_2451SDY_2450SDY_2449
SBOY300268 SBO_2294SBO_2293SBO_2292SBO_2291SBO_2290
RSOL267608 RSP1193RSC1318RSC1319RSC1321RSC1322
RMET266264 RMET_6130RMET_4593RMET_4827RMET_4590RMET_4589
REUT381666 H16_B1637H16_B1643H16_A1425H16_B1640H16_B1639
REUT264198 REUT_A1336REUT_B3973REUT_B3974REUT_B3976REUT_B3977
PSYR205918 PSYR_2693PSYR_2692PSYR_2691PSYR_2690PSYR_2689
PSP312153 PNUC_0435PNUC_0430PNUC_0431PNUC_0433PNUC_0434
PPRO298386 PBPRB0751PBPRA3580PBPRB0750PBPRA2710
PLUM243265 PLU2656PLU2657PLU2658PLU2659PLU2660
PFLU220664 PFL_3047PFL_3046PFL_3045PFL_3044PFL_3043
PFLU216595 PFLU3039PFLU3040PFLU3041PFLU3042PFLU5872
PFLU205922 PFL_2845PFL_2844PFL_2843PFL_2842PFL_2841
PAER208964 PA3556PA3555PA3554PA3553PA3552
PAER208963 PA14_18330PA14_18340PA14_18350PA14_18360PA14_18370
MCAP243233 MCA_0471MCA_2844MCA_2193MCA_2125
LCHO395495 LCHO_3623LCHO_0351LCHO_3622LCHO_0299
KPNE272620 GKPORF_B3187GKPORF_B3188GKPORF_B3189GKPORF_B3190GKPORF_B3191
GVIO251221 GLL3582GLL2179GLL0700GLR1861
GURA351605 GURA_3694GURA_3699GURA_3698GURA_3696GURA_3695
GSUL243231 GSU_2555GSU_2557GSU_0130GSU_0623GSU_2262
GMET269799 GMET_0887GMET_0882GMET_0883GMET_0885GMET_0886
GFOR411154 GFO_1217GFO_3285GFO_1061GFO_2027
ESP42895 ENT638_2075ENT638_2076ENT638_2077ENT638_2078ENT638_2079
EFER585054 EFER_0912EFER_0913EFER_0914EFER_0915EFER_0916
ECOO157 Z3515Z3514Z3513Z3512Z3511
ECOL83334 ECS3145ECS3144ECS3143ECS3142ECS3141
ECOL585397 ECED1_2724ECED1_2722ECED1_2721ECED1_2720ECED1_2719
ECOL585057 ECIAI39_2404ECIAI39_2403ECIAI39_2402ECIAI39_2401ECIAI39_2400
ECOL585056 ECUMN_2599ECUMN_2597ECUMN_2596ECUMN_2595ECUMN_2594
ECOL585055 EC55989_2504EC55989_2502EC55989_2501EC55989_2500EC55989_2499
ECOL585035 ECS88_2407ECS88_2405ECS88_2404ECS88_2403ECS88_2402
ECOL585034 ECIAI1_2334ECIAI1_2332ECIAI1_2331ECIAI1_2330ECIAI1_2329
ECOL481805 ECOLC_1392ECOLC_1393ECOLC_1394ECOLC_1395ECOLC_1396
ECOL469008 ECBD_1402ECBD_1403ECBD_1404ECBD_1405ECBD_1406
ECOL439855 ECSMS35_2411ECSMS35_2410ECSMS35_2409ECSMS35_2408ECSMS35_2407
ECOL413997 ECB_02183ECB_02182ECB_02181ECB_02180ECB_02179
ECOL409438 ECSE_2516ECSE_2515ECSE_2514ECSE_2513ECSE_2512
ECOL405955 APECO1_4304APECO1_4305APECO1_4306APECO1_4307APECO1_4308
ECOL364106 UTI89_C2539UTI89_C2538UTI89_C2537UTI89_C2536UTI89_C2535
ECOL362663 ECP_2300ECP_2299ECP_2298ECP_2297ECP_2296
ECOL331111 ECE24377A_2552ECE24377A_2551ECE24377A_2550ECE24377A_2549ECE24377A_2548
ECOL316407 ECK2250:JW2251:B2257ECK2249:JW2250:B2256ECK2248:JW2249:B2255ECK2247:JW2248:B2254ECK2246:JW5372:B2253
ECOL199310 C2799C2798C2797C2796C2795
ECAR218491 ECA3142ECA3143ECA3144ECA3145ECA3146
DVUL882 DVU_1214DVU_3365DVU_3013DVU_3010
DDES207559 DDE_2420DDE_0014DDE_1596DDE_1131
CVIO243365 CV_0752CV_0745CV_0747CV_0749CV_4118
BVIE269482 BCEP1808_1784BCEP1808_1790BCEP1808_1789BCEP1808_1787BCEP1808_1786
BTHA271848 BTH_I2195BTH_I2189BTH_I2190BTH_I2192BTH_I2193
BSP376 BRADO3919BRADO2062BRADO0168BRADO5191
BSP36773 BCEP18194_A5158BCEP18194_A5164BCEP18194_A5163BCEP18194_A5161BCEP18194_A5160
BPSE320373 BURPS668_2235BURPS668_2241BURPS668_2240BURPS668_2238BURPS668_2237
BPSE320372 BURPS1710B_A2601BURPS1710B_A2607BURPS1710B_A2606BURPS1710B_A2604BURPS1710B_A2603
BPSE272560 BPSL1474BPSL1468BPSL0122BPSL1471BPSL1472
BMAL320389 BMA10247_1150BMA10247_1156BMA10247_1155BMA10247_1153BMA10247_1152
BMAL320388 BMASAVP1_A1878BMASAVP1_A1884BMASAVP1_A1883BMASAVP1_A1881BMASAVP1_A1880
BMAL243160 BMA_1388BMA_1394BMA_1393BMA_1391BMA_1390
BFRA295405 BF3423BF3903BF1186BF3912
BFRA272559 BF3245BF3673BF1152BF0734
BCEN331272 BCEN2424_1857BCEN2424_1863BCEN2424_1862BCEN2424_1860BCEN2424_1859
BCEN331271 BCEN_6222BCEN_6216BCEN_6217BCEN_6219BCEN_6220
BAMB398577 BAMMC406_1767BAMMC406_1773BAMMC406_1772BAMMC406_1770BAMMC406_1769
BAMB339670 BAMB_1795BAMB_1801BAMB_1800BAMB_1798BAMB_1797
ASAL382245 ASA_3311ASA_3310ASA_3309ASA_3308ASA_3307
AHYD196024 AHA_0988AHA_0989AHA_0990AHA_0991AHA_0992
ACAU438753 AZC_1580AZC_2736AZC_0797AZC_1472AZC_3423
ABAC204669 ACID345_4212ACID345_4228ACID345_2286ACID345_3300


Organism features enriched in list (features available for 89 out of the 94 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000723392
Arrangment:Pairs 0.008966925112
Disease:Bubonic_plague 0.000010966
Disease:Dysentery 0.000010966
Disease:Gastroenteritis 0.0010694713
Disease:Glanders_and_pneumonia 0.003456433
Disease:Melioidosis 0.003456433
Disease:None 0.0096949358
Disease:diarrhea 0.003456433
Endospores:No 0.000083317211
GC_Content_Range4:0-40 2.069e-181213
GC_Content_Range4:40-60 5.126e-959224
GC_Content_Range7:30-40 2.371e-131166
GC_Content_Range7:50-60 2.211e-1141107
GC_Content_Range7:60-70 0.007776129134
Genome_Size_Range5:2-4 2.537e-89197
Genome_Size_Range5:4-6 4.268e-1561184
Genome_Size_Range5:6-10 8.120e-61947
Genome_Size_Range9:2-3 6.209e-73120
Genome_Size_Range9:4-5 1.928e-63196
Genome_Size_Range9:5-6 7.932e-73088
Genome_Size_Range9:6-8 9.104e-71838
Gram_Stain:Gram_Neg 3.585e-1380333
Habitat:Aquatic 0.0042042691
Habitat:Multiple 0.000334741178
Motility:No 6.454e-76151
Motility:Yes 0.000082557267
Oxygen_Req:Aerobic 0.000787116185
Oxygen_Req:Anaerobic 0.00108746102
Oxygen_Req:Facultative 1.755e-956201
Pathogenic_in:Human 0.000609146213
Pathogenic_in:No 0.000030318226
Shape:Coccus 0.0003416382
Shape:Rod 1.171e-1281347
Temp._range:Mesophilic 0.001184182473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 274
Effective number of orgs (counting one per cluster within 468 clusters): 239

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP61
VFIS312309 ncbi Vibrio fischeri ES1140
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP292414 ncbi Ruegeria sp. TM10401
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SMUT210007 ncbi Streptococcus mutans UA1591
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2171
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.1
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 231
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GOXY290633 ncbi Gluconobacter oxydans 621H1
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE451
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CJAP155077 Cellvibrio japonicus1
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER405917 Bacillus cereus W1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7170   G7169   G7168   G7167   G7166   
ZMOB264203
WSUC273121 WS1076
WPIP955
WPIP80849
VVUL216895 VV1_1047
VFIS312309
VEIS391735
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0320
TSP1755 TETH514_1755
TPSE340099 TETH39_1319
TPEN368408 TPEN_0110
TPAL243276 TP_0078
TLET416591
TKOD69014
TFUS269800
TELO197221 TLR1344
TDEN326298 TMDEN_0190
TDEN243275 TDE_0725
TCRU317025 TCR_0192
TACI273075
STRO369723 STROP_1688
STOK273063
STHE292459 STH1344
SSUI391296 SSU98_0412
SSUI391295 SSU05_0425
SSP644076
SSP387093 SUN_0095
SSP292414 TM1040_3423
SSOL273057
SSAP342451 SSP1556
SMUT210007 SMU_833
SMEL266834 SMC02384
SMAR399550
SLAC55218
SELO269084 SYC1433_D
SDEN318161 SDEN_2654
SAVE227882
SALA317655
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH272943 RSP_0160
RSAL288705 RSAL33209_2353
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058 RPB_2917
RPAL316057 RPD_2553
RPAL316056 RPC_4183
RPAL316055 RPE_4252
RPAL258594 RPA2555
RMAS416276
RFEL315456
RDEN375451 RD1_1339
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_1844
RAKA293614
PTOR263820
PSP56811 PSYCPRWF_0245
PSP296591
PRUM264731 GFRORF2903
PNAP365044 PNAP_3118
PMUL272843
PMOB403833 PMOB_0050
PMAR93060 P9215_17901
PMAR74546 PMT9312_1614
PMAR167546 P9301ORF_1746
PMAR167542 P9515ORF_1773
PMAR167540 PMM1522
PISL384616 PISL_1846
PING357804 PING_0079
PHOR70601
PHAL326442
PFUR186497 PF0767
PDIS435591 BDI_0175
PCRY335284
PAST100379
PARS340102 PARS_2093
PAER178306 PAE2053
PACN267747 PPA0135
PABY272844 PAB0774
OTSU357244
OCAR504832
OANT439375
NWIN323098 NWI_0642
NSP35761 NOCA_4210
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156
NARO279238
MVAN350058
MTUB419947
MTUB336982
MTHE349307 MTHE_1460
MTHE187420 MTH1188
MTBRV
MTBCDC
MSYN262723
MSUC221988 MS0664
MSTA339860 MSP_0290
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_0014
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE500
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880 MMARC5_0502
MMAR267377 MMP0351
MLEP272631
MLAB410358 MLAB_0192
MKAN190192 MK0156
MJAN243232 MJ_1066
MHYO295358
MHYO262722
MHYO262719
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_0121
MBOV410289
MBOV233413
MAVI243243
MART243272
MAEO419665 MAEO_0427
MACE188937 MA1184
LXYL281090
LSPH444177 BSPH_1489
LPLA220668 LP_1616
LINT363253 LIB010
KRAD266940 KRAD_3451
JSP290400
ILOI283942 IL0017
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963 JHP1015
HPYL357544
HPY
HMUK485914 HMUK_1470
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HDUC233412
HCHE349521 HCH_00029
HBUT415426 HBUT_1412
HACI382638
GTHE420246 GTNG_1025
GOXY290633 GOX2128
GBET391165 GBCGDNIH1_0717
FSP106370
FNOD381764
FMAG334413 FMG_0582
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DRAD243230
DPSY177439 DP0747
DNOD246195
DGEO319795
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_01639
CSUL444179
CSP78 CAUL_4633
CSP501479 CSE45_0078
CSAL290398 CSAL_1246
CRUT413404
CPRO264201 PC0404
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_2491
CPER289380 CPR_1714
CPER195103 CPF_1996
CPER195102 CPE1743
CPEL335992
CMUR243161 TC_0817
CMIC443906
CMIC31964 CMS0636
CMET456442 MBOO_1834
CMAQ397948 CMAQ_1039
CKOR374847 KCR_1162
CJEJ407148 C8J_1237
CJEJ360109 JJD26997_0428
CJEJ354242 CJJ81176_1311
CJEJ195099 CJE_1486
CJEJ192222 CJ1294
CJEI306537 JK1777
CJAP155077 CJA_1622
CHYD246194
CHOM360107
CGLU196627 CG1803
CFET360106 CFF8240_1567
CFEL264202
CEFF196164
CDIP257309 DIP1322
CDIF272563 CD2584
CCUR360105 CCV52592_0561
CCON360104 CCC13826_0537
CCAV227941
CBLO291272
CBLO203907
CABO218497
BXEN266265
BTUR314724
BTRI382640
BSP107806
BQUI283165
BOVI236 GBOORFA0138
BLON206672
BHER314723
BHEN283166 BH00750
BHAL272558 BH2508
BGAR290434
BCIC186490
BCER405917 BCE_3908
BBUR224326
BBAC360095
BAPH372461
BAPH198804 BUSG478
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_4058
APLE434271 APJL_1577
APLE416269 APL_1549
APHA212042
APER272557
ANAE240017 ANA_1572
AMAR234826
ALAI441768
AFUL224325
ACEL351607 ACEL_1938
ABUT367737 ABU_0667
ABOR393595
AAUR290340 AAUR_2152


Organism features enriched in list (features available for 253 out of the 274 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00050352692
Arrangment:Clusters 0.0045860217
Arrangment:Pairs 0.001250735112
Disease:Pharyngitis 0.001180488
Disease:bronchitis_and_pneumonitis 0.001180488
Endospores:No 4.087e-6117211
Endospores:Yes 0.00355191453
GC_Content_Range4:0-40 0.0011304109213
GC_Content_Range4:40-60 0.001407681224
GC_Content_Range7:0-30 2.475e-73747
GC_Content_Range7:50-60 9.537e-627107
Genome_Size_Range5:0-2 2.378e-21117155
Genome_Size_Range5:4-6 8.969e-1243184
Genome_Size_Range5:6-10 0.0001916947
Genome_Size_Range9:0-1 7.112e-112727
Genome_Size_Range9:1-2 2.483e-1290128
Genome_Size_Range9:4-5 0.00015092696
Genome_Size_Range9:5-6 2.050e-71788
Genome_Size_Range9:6-8 0.0005870738
Gram_Stain:Gram_Neg 0.0072763132333
Habitat:Host-associated 0.0003612108206
Habitat:Multiple 2.702e-750178
Habitat:Specialized 0.00179783353
Habitat:Terrestrial 0.0078416731
Motility:Yes 5.228e-690267
Optimal_temp.:30-37 0.0004209118
Optimal_temp.:37 0.000909860106
Oxygen_Req:Anaerobic 0.001802957102
Oxygen_Req:Facultative 1.912e-1052201
Oxygen_Req:Microaerophilic 0.00234191418
Shape:Irregular_coccus 0.00001191617
Shape:Rod 0.0000428128347
Shape:Sphere 0.00022831619
Shape:Spiral 0.00066402434
Temp._range:Hyperthermophilic 0.00008961923
Temp._range:Mesophilic 7.993e-6185473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73550.6133
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176790.5224
PWY0-1182 (trehalose degradation II (trehalase))70470.5174
PWY0-981 (taurine degradation IV)106590.5133
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.5060
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218860.4993
AST-PWY (arginine degradation II (AST pathway))120620.4991
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156700.4809
GLUCARDEG-PWY (D-glucarate degradation I)152670.4601
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195770.4601
ECASYN-PWY (enterobacterial common antigen biosynthesis)191760.4589
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149660.4575
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50350.4532
PWY-6196 (serine racemization)102510.4316
GLYCOCAT-PWY (glycogen degradation I)246840.4301
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91470.4224
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4191
PWY0-1338 (biosynthesis of 4-amino-4-deoxy-L-arabinose-modified lipid A)21200.4182
PYRUVOX-PWY (pyruvate oxidation pathway)70400.4180
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212760.4166
GLUTDEG-PWY (glutamate degradation II)194720.4138
PWY0-901 (selenocysteine biosynthesis I (bacteria))230790.4116
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96470.4039



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7169   G7168   G7167   G7166   
G71700.9993440.9991520.9993040.998854
G71690.9993670.9993260.99922
G71680.9990350.99885
G71670.999162
G7166



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PAIRWISE BLAST SCORES:

  G7170   G7169   G7168   G7167   G7166   
G71700.0f0----
G7169-0.0f0---
G7168--0.0f0--
G7167---0.0f0-
G7166----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-1338 (biosynthesis of  4-amino-4-deoxy-L-arabinose-modified lipid A) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.600, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9989 G7168 (arnA) G7168-MONOMER (fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase)
   *in cand* 0.9992 0.9989 G7166 (arnB) G7166-MONOMER (UDP-L-Ara4O C-4" transaminase)
   *in cand* 0.9994 0.9990 G7167 (arnC) G7167-MONOMER (undecaprenyl phosphate-L-Ara4FN transferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9992 G7169 (arnD) G7169-MONOMER (conserved protein)
   *in cand* 0.9993 0.9989 G7170 (arnT) G7170-MONOMER (4-amino-4-deoxy-L-arabinose (L-Ara4N) transferase)
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7166 G7167 G7168 G7169 G7170 (centered at G7168)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7170   G7169   G7168   G7167   G7166   
187/62380/623306/623301/623288/623
AAEO224324:0:Tyes0--489-
AAUR290340:2:Tyes----0
AAVE397945:0:Tyes---0347
ABAC204669:0:Tyes1942-195801020
ABAU360910:0:Tyes2839--28400
ABUT367737:0:Tyes----0
ACAU438753:0:Tyes793196106822655
ACEL351607:0:Tyes----0
ACRY349163:8:Tyes---4330
ADEH290397:0:Tyes--920-0
AEHR187272:0:Tyes--304-0
AFER243159:0:Tyes0-25048-
AHYD196024:0:Tyes01234
AMAR329726:9:Tyes---01765
AMET293826:0:Tyes--242703066
ANAE240017:0:Tyes----0
AORE350688:0:Tyes--0-1156
APLE416269:0:Tyes----0
APLE434271:0:Tno----0
ASAL382245:5:Tyes43210
ASP1667:3:Tyes----0
ASP232721:2:Tyes---02527
ASP62928:0:Tyes2110-0659-
ASP62977:0:Tyes0--2-
ASP76114:2:Tyes0-1372--
AVAR240292:3:Tyes401--25060
BABO262698:0:Tno0----
BABO262698:1:Tno----0
BAMB339670:3:Tno06532
BAMB398577:3:Tno06532
BAMY326423:0:Tyes--68702643
BANT260799:0:Tno--01586-
BANT261594:2:Tno--01585-
BANT568206:2:Tyes--04977-
BANT592021:2:Tno--01635-
BAPH198804:0:Tyes--0--
BBAC264462:0:Tyes0---185
BBRO257310:0:Tyes4159--41600
BCAN483179:0:Tno0----
BCAN483179:1:Tno----0
BCEN331271:0:Tno60134
BCEN331272:3:Tyes06532
BCER226900:1:Tyes--01536-
BCER288681:0:Tno--01520-
BCER315749:1:Tyes--01380-
BCER405917:1:Tyes--0--
BCER572264:1:Tno--63021990
BCLA66692:0:Tyes--14280-
BFRA272559:1:Tyes2460-28773900
BFRA295405:0:Tno2264-275302762
BHAL272558:0:Tyes--0--
BHEN283166:0:Tyes--0--
BJAP224911:0:Fyes1331--0538
BLIC279010:0:Tyes--95332680
BMAL243160:1:Tno06532
BMAL320388:1:Tno06532
BMAL320389:1:Tyes06532
BMEL224914:0:Tno0----
BMEL224914:1:Tno----0
BMEL359391:0:Tno0----
BMEL359391:1:Tno----0
BOVI236:0:Tyes0----
BPAR257311:0:Tno3517--35180
BPER257313:0:Tyes278--2790
BPET94624:0:Tyes0--4007888
BPSE272560:1:Tyes13641360013611362
BPSE320372:1:Tno06532
BPSE320373:1:Tno06532
BPUM315750:0:Tyes--016871960
BSP36773:2:Tyes06532
BSP376:0:Tyes3550-178704760
BSUB:0:Tyes--31002619
BSUI204722:0:Tyes0----
BSUI204722:1:Tyes----0
BSUI470137:0:Tno0----
BSUI470137:1:Tno----0
BTHA271848:1:Tno60134
BTHE226186:0:Tyes--340728300
BTHU281309:1:Tno--01495-
BTHU412694:1:Tno--53919390
BVIE269482:7:Tyes06532
BWEI315730:3:Tyes----0
BWEI315730:4:Tyes--0--
CACE272562:1:Tyes--01951528
CAULO:0:Tyes--4526970
CBEI290402:0:Tyes--0-3493
CBOT36826:1:Tno--1650-0
CBOT441770:0:Tyes--1481-0
CBOT441771:0:Tno--1451-0
CBOT441772:1:Tno--1623-0
CBOT498213:1:Tno--1596-0
CBOT508765:1:Tyes--0-2139
CBOT515621:2:Tyes--1837-0
CBOT536232:0:Tno--1774-0
CBUR227377:1:Tyes--13660243
CBUR360115:1:Tno--0572968
CBUR434922:2:Tno--11505660
CCHL340177:0:Tyes119-0118-
CCON360104:2:Tyes----0
CCUR360105:0:Tyes----0
CDES477974:0:Tyes--0-172
CDIF272563:1:Tyes--0--
CDIP257309:0:Tyes--0--
CFET360106:0:Tyes----0
CGLU196627:0:Tyes--0--
CHUT269798:0:Tyes--014011886
CJAP155077:0:Tyes---0-
CJEI306537:0:Tyes--0--
CJEJ192222:0:Tyes----0
CJEJ195099:0:Tno----0
CJEJ354242:2:Tyes----0
CJEJ360109:0:Tyes----0
CJEJ407148:0:Tno----0
CKLU431943:1:Tyes---3420
CKOR374847:0:Tyes----0
CMAQ397948:0:Tyes----0
CMET456442:0:Tyes----0
CMIC31964:2:Tyes---0-
CMUR243161:1:Tyes--0--
CNOV386415:0:Tyes--773-0
CPER195102:1:Tyes--0--
CPER195103:0:Tno--0--
CPER289380:3:Tyes--0--
CPHY357809:0:Tyes--0--
CPRO264201:0:Fyes--0--
CPSY167879:0:Tyes1--0228
CSAL290398:0:Tyes---0-
CSP501479:8:Fyes--0--
CSP78:2:Tyes----0
CTEP194439:0:Tyes1-10720-
CTET212717:0:Tyes----0
CVIO243365:0:Tyes70243471
DARO159087:0:Tyes1518--22440
DDES207559:0:Tyes2446-016021132
DHAF138119:0:Tyes--130002903
DOLE96561:0:Tyes--80001035
DPSY177439:2:Tyes--0--
DRED349161:0:Tyes--0-1441
DVUL882:1:Tyes0-214017901787
ECAR218491:0:Tyes01234
ECOL199310:0:Tno43210
ECOL316407:0:Tno43210
ECOL331111:6:Tno43210
ECOL362663:0:Tno43210
ECOL364106:1:Tno43210
ECOL405955:2:Tyes43210
ECOL409438:6:Tyes43210
ECOL413997:0:Tno43210
ECOL439855:4:Tno43210
ECOL469008:0:Tno01234
ECOL481805:0:Tno01234
ECOL585034:0:Tno43210
ECOL585035:0:Tno43210
ECOL585055:0:Tno43210
ECOL585056:2:Tno43210
ECOL585057:0:Tno43210
ECOL585397:0:Tno43210
ECOL83334:0:Tno43210
ECOLI:0:Tno43210
ECOO157:0:Tno43210
EFAE226185:3:Tyes--2080-
EFER585054:1:Tyes01234
ESP42895:1:Tyes01234
FJOH376686:0:Tyes--270-
FMAG334413:1:Tyes----0
FNUC190304:0:Tyes0-227--
FPHI484022:1:Tyes542--0-
FRANT:0:Tno0--916-
FSP1855:0:Tyes--0-356
FSUC59374:0:Tyes--0443-
FTUL351581:0:Tno862--0-
FTUL393011:0:Tno765--0-
FTUL393115:0:Tyes0--900-
FTUL401614:0:Tyes0--850-
FTUL418136:0:Tno986--0-
FTUL458234:0:Tno790--0-
GBET391165:0:Tyes---0-
GFOR411154:0:Tyes156-22240966
GKAU235909:1:Tyes--019572034
GMET269799:1:Tyes50134
GOXY290633:5:Tyes---0-
GSUL243231:0:Tyes2413241504892120
GTHE420246:1:Tyes--0--
GURA351605:0:Tyes05421
GVIO251221:0:Tyes2921-149701176
HARS204773:0:Tyes924--4570
HAUR316274:2:Tyes--4156-0
HBUT415426:0:Tyes----0
HCHE349521:0:Tyes--0--
HHAL349124:0:Tyes--466-0
HMOD498761:0:Tyes--1409-0
HMUK485914:1:Tyes----0
HNEP81032:0:Tyes--0-1701
HPYL85963:0:Tno----0
ILOI283942:0:Tyes--0--
JSP375286:0:Tyes--01657-
KPNE272620:2:Tyes01234
KRAD266940:2:Fyes---0-
LACI272621:0:Tyes--360-
LBIF355278:2:Tyes1263--18840
LBIF456481:2:Tno1308--19390
LBOR355276:1:Tyes1330--0329
LBOR355277:1:Tno0--1326291
LBRE387344:2:Tyes--6320-
LCAS321967:1:Tyes--01024-
LCHO395495:0:Tyes3353-5733520
LDEL321956:0:Tyes--10830-
LDEL390333:0:Tyes--10120-
LGAS324831:0:Tyes--5700-
LHEL405566:0:Tyes--4390-
LINN272626:1:Tno--0779-
LINT189518:1:Tyes---02323
LINT267671:1:Tno---0924
LINT363253:1:Tyes----0
LJOH257314:0:Tyes--11790-
LLAC272622:5:Tyes--610-
LLAC272623:0:Tyes--17860-
LMES203120:1:Tyes--13520-
LMON169963:0:Tno--0751-
LMON265669:0:Tyes--7500-
LPLA220668:0:Tyes--0--
LPNE272624:0:Tno0-19551840-
LPNE297245:1:Fno0-18401721-
LPNE297246:1:Fyes0-19531848-
LPNE400673:0:Tno2067-01422-
LREU557436:0:Tyes--0213-
LSAK314315:0:Tyes--0836-
LSPH444177:1:Tyes--0--
LWEL386043:0:Tyes--0658-
MABS561007:1:Tyes--0-352
MACE188937:0:Tyes---0-
MAEO419665:0:Tyes----0
MAER449447:0:Tyes3023--01109
MAQU351348:2:Tyes239-0245-
MBAR269797:1:Tyes---13280
MBUR259564:0:Tyes----0
MCAP243233:0:Tyes0-224016151552
MEXT419610:0:Tyes611---0
MFLA265072:0:Tyes--01188-
MHUN323259:0:Tyes---9840
MJAN243232:2:Tyes----0
MKAN190192:0:Tyes----0
MLAB410358:0:Tyes--0--
MLOT266835:2:Tyes---0925
MMAG342108:0:Tyes--1311170
MMAR267377:0:Tyes----0
MMAR368407:0:Tyes---02068
MMAR394221:0:Tyes--0-1511
MMAR402880:1:Tyes----0
MMAZ192952:0:Tyes---10950
MPEN272633:0:Tyes--0--
MPET420662:1:Tyes--0-323
MSME246196:0:Tyes--0--
MSP400668:0:Tyes1--0895
MSP409:2:Tyes--19312450
MSTA339860:0:Tyes----0
MSUC221988:0:Tyes---0-
MTHE187420:0:Tyes----0
MTHE264732:0:Tyes--14515720
MTHE349307:0:Tyes----0
MXAN246197:0:Tyes4033-0--
NEUR228410:0:Tyes--0206-
NEUT335283:2:Tyes--3500-
NHAM323097:2:Tyes0---930
NMUL323848:3:Tyes--1054360
NOCE323261:1:Tyes--1254-0
NSP103690:6:Tyes0--1318948
NSP35761:1:Tyes----0
NSP387092:0:Tyes311--0208
NWIN323098:0:Tyes----0
OIHE221109:0:Tyes--0924-
PABY272844:0:Tyes----0
PACN267747:0:Tyes----0
PAER178306:0:Tyes----0
PAER208963:0:Tyes01234
PAER208964:0:Tno43210
PARC259536:0:Tyes--1516012
PARS340102:0:Tyes----0
PATL342610:0:Tyes3683-0-3084
PCAR338963:0:Tyes--01033904
PDIS435591:0:Tyes---0-
PENT384676:0:Tyes3123-05020-
PFLU205922:0:Tyes43210
PFLU216595:1:Tyes01232739
PFLU220664:0:Tyes43210
PFUR186497:0:Tyes----0
PGIN242619:0:Tyes--14710-
PING357804:0:Tyes--0--
PINT246198:1:Tyes---0483
PISL384616:0:Tyes----0
PLUM243265:0:Fyes01234
PLUT319225:0:Tyes1--0-
PMAR146891:0:Tyes0--355-
PMAR167539:0:Tyes997--13890
PMAR167540:0:Tyes---0-
PMAR167542:0:Tyes---0-
PMAR167546:0:Tyes---0-
PMAR167555:0:Tyes1302--16200
PMAR59920:0:Tno0--298873
PMAR74546:0:Tyes---0-
PMAR74547:0:Tyes1287--17080
PMAR93060:0:Tyes---0-
PMEN399739:0:Tyes--0-1821
PMOB403833:0:Tyes--0--
PNAP365044:8:Tyes----0
PPEN278197:0:Tyes--0742-
PPRO298386:1:Tyes1--0-
PPRO298386:2:Tyes--866-0
PPUT160488:0:Tno0-34--
PPUT351746:0:Tyes0-36--
PPUT76869:0:Tno2812-0--
PRUM264731:0:Tyes---0-
PSP117:0:Tyes6729--29270
PSP312153:0:Tyes50134
PSP56811:2:Tyes----0
PSTU379731:0:Tyes--0-3802
PSYR205918:0:Tyes43210
PSYR223283:2:Tyes5346-0--
PTHE370438:0:Tyes--0-788
RALB246199:0:Tyes--0--
RCAS383372:0:Tyes--2429014
RDEN375451:4:Tyes--0--
RETL347834:5:Tyes---13750
REUT264198:2:Tyes-0134
REUT264198:3:Tyes0----
REUT381666:1:Tyes06-32
REUT381666:2:Tyes--0--
RFER338969:1:Tyes0---484
RLEG216596:2:Tyes----0
RLEG216596:6:Tyes---0-
RMET266264:0:Tyes0----
RMET266264:1:Tyes-423810
RPAL258594:0:Tyes0----
RPAL316055:0:Tyes----0
RPAL316056:0:Tyes---0-
RPAL316057:0:Tyes0----
RPAL316058:0:Tyes0----
RRUB269796:1:Tyes---01737
RSAL288705:0:Tyes--0--
RSOL267608:0:Tyes0----
RSOL267608:1:Tyes-0134
RSP101510:3:Fyes--607-0
RSP357808:0:Tyes--535320
RSPH272943:4:Tyes--0--
RSPH349101:1:Tno----0
RSPH349101:2:Tno--0--
SACI56780:0:Tyes--566-0
SAGA205921:0:Tno--01080-
SAGA208435:0:Tno--01135-
SAGA211110:0:Tyes--01233-
SARE391037:0:Tyes---10480
SAUR158878:1:Tno--5150-
SAUR158879:1:Tno--4230-
SAUR196620:0:Tno--4380-
SAUR273036:0:Tno--4180-
SAUR282458:0:Tno--4270-
SAUR282459:0:Tno--4870-
SAUR359786:1:Tno--5470-
SAUR359787:1:Tno--5530-
SAUR367830:3:Tno--4130-
SAUR418127:0:Tyes--5100-
SAUR426430:0:Tno--4580-
SAUR93061:0:Fno--4540-
SAUR93062:1:Tno--4560-
SBAL399599:3:Tyes4546-0-2497
SBAL402882:1:Tno4376-0-2363
SBOY300268:1:Tyes43210
SCO:2:Fyes--04207-
SDEG203122:0:Tyes0--1-
SDEN318161:0:Tyes----0
SDYS300267:1:Tyes43210
SELO269084:0:Tyes----0
SENT209261:0:Tno01234
SENT220341:0:Tno43210
SENT295319:0:Tno01234
SENT321314:2:Tno32106510
SENT454169:2:Tno43210
SEPI176279:1:Tyes--4060-
SEPI176280:0:Tno--4180-
SERY405948:0:Tyes--24770551
SFLE198214:0:Tyes43210
SFLE373384:0:Tno43210
SFUM335543:0:Tyes0-1220781-
SGLO343509:3:Tyes01234
SGOR29390:0:Tyes--0406-
SHAE279808:0:Tyes--0496-
SHAL458817:0:Tyes--0-1391
SHIGELLA:0:Tno43210
SLOI323850:0:Tyes--2504-0
SMED366394:2:Tyes----0
SMED366394:3:Tyes---0-
SMEL266834:2:Tyes---0-
SMUT210007:0:Tyes---0-
SONE211586:1:Tyes4588-0-3185
SPEA398579:0:Tno3750-037511438
SPNE1313:0:Tyes--1190-
SPNE170187:0:Tyes--1130-
SPNE171101:0:Tno--1200-
SPNE487213:0:Tno--1240-
SPNE487214:0:Tno--1230-
SPNE488221:0:Tno--1270-
SPRO399741:1:Tyes43210
SPYO160490:0:Tno--9060-
SPYO186103:0:Tno--9280-
SPYO193567:0:Tno--01020-
SPYO198466:0:Tno--10140-
SPYO286636:0:Tno--9530-
SPYO293653:0:Tno--9240-
SPYO319701:0:Tyes--9760-
SPYO370551:0:Tno--9260-
SPYO370552:0:Tno--10460-
SPYO370553:0:Tno--9330-
SPYO370554:0:Tyes--10270-
SRUB309807:1:Tyes--0231-
SSAP342451:2:Tyes--0--
SSED425104:0:Tyes01234
SSON300269:1:Tyes43210
SSP1131:0:Tyes386--1300
SSP1148:0:Tyes0-11721710296
SSP292414:1:Tyes----0
SSP321327:0:Tyes0-2747561
SSP321332:0:Tyes542-5400527
SSP387093:0:Tyes----0
SSP64471:0:Tyes1816--1430
SSP84588:0:Tyes1686--19340
SSP94122:1:Tyes4153-0-1307
SSUI391295:0:Tyes--0--
SSUI391296:0:Tyes--0--
STHE264199:0:Tyes--048-
STHE292459:0:Tyes--0--
STHE299768:0:Tno--052-
STHE322159:2:Tyes--049-
STRO369723:0:Tyes----0
STYP99287:1:Tyes43210
SWOL335541:0:Tyes--959-0
TCRU317025:0:Tyes--0--
TDEN243275:0:Tyes----0
TDEN292415:0:Tyes1545-0--
TDEN326298:0:Tyes----0
TELO197221:0:Tyes----0
TERY203124:0:Tyes850--13860
TMAR243274:0:Tyes--0-44
TPAL243276:0:Tyes----0
TPEN368408:1:Tyes----0
TPET390874:0:Tno--44-0
TPSE340099:0:Tyes--0--
TROS309801:1:Tyes--0439-
TSP1755:0:Tyes--0--
TSP28240:0:Tyes--45-0
TTEN273068:0:Tyes--798-0
TTHE262724:1:Tyes--1400-0
TTHE300852:2:Tyes--0--
TTUR377629:0:Tyes1383--0-
UMET351160:0:Tyes---13650
VCHO:0:Tyes--0-213
VCHO345073:1:Tno--0-136
VPAR223926:1:Tyes0-1111--
VVUL196600:2:Tyes--3030-0
VVUL216895:1:Tno--0--
WSUC273121:0:Tyes----0
XAUT78245:1:Tyes2209--0-
XAXO190486:0:Tyes2107--13550
XCAM190485:0:Tyes2075--11920
XCAM314565:0:Tno2586--01318
XCAM316273:0:Tno0--2633204
XCAM487884:0:Tno2675--01315
XFAS160492:2:Tno763--0-
XFAS183190:1:Tyes1586--0-
XFAS405440:0:Tno1644--0-
XORY291331:0:Tno0--12362439
XORY342109:0:Tyes0--11752328
XORY360094:0:Tno0--48591897
YENT393305:1:Tyes01234
YPES187410:5:Tno43210
YPES214092:3:Tno01234
YPES349746:2:Tno01234
YPES360102:3:Tyes01234
YPES377628:2:Tno01234
YPES386656:2:Tno43210
YPSE273123:2:Tno01234
YPSE349747:2:Tno65410



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