CANDIDATE ID: 523

CANDIDATE ID: 523

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9896060e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6562 (flgN) (b1070)
   Products of gene:
     - G6562-MONOMER (flagellar biosynthesis protein FlgN)

- G369 (flgM) (b1071)
   Products of gene:
     - G369-MONOMER (anti-sigma factor for FliA (sigma 28))

- G360 (flgD) (b1075)
   Products of gene:
     - G360-MONOMER (flagellar biosynthesis, initiation of hook assembly)

- G358 (flgB) (b1073)
   Products of gene:
     - FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- G357 (flgA) (b1072)
   Products of gene:
     - G357-MONOMER (flagellar biosynthesis; assembly of basal-body periplasmic P ring)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 55
Effective number of orgs (counting one per cluster within 468 clusters): 23

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSON300269 ncbi Shigella sonnei Ss0465
SPRO399741 ncbi Serratia proteamaculans 5685
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2275
RSOL267608 ncbi Ralstonia solanacearum GMI10004
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
JSP375286 ncbi Janthinobacterium sp. Marseille4
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
BSP36773 Burkholderia sp.4
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BBRO257310 ncbi Bordetella bronchiseptica RB504
ABAU360910 ncbi Bordetella avium 197N4


Names of the homologs of the genes in the group in each of these orgs
  G6562   G369   G360   G358   G357   
YPSE349747 YPSIP31758_2328YPSIP31758_2327YPSIP31758_2322YPSIP31758_2324YPSIP31758_2325
YPSE273123 YPTB1669YPTB1670YPTB1674YPTB1672YPTB1671
YPES386656 YPDSF_1328YPDSF_1327YPDSF_1323YPDSF_1325YPDSF_1326
YPES377628 YPN_2328YPN_2327YPN_2323YPN_2325YPN_2326
YPES360102 YPA_1171YPA_1172YPA_1176YPA_1174YPA_1173
YPES349746 YPANGOLA_A1995YPANGOLA_A1996YPANGOLA_A2000YPANGOLA_A1998YPANGOLA_A1997
YPES214092 YPO1796YPO1797YPO1801YPO1799YPO1798
YPES187410 Y2514Y2513Y2508Y2510Y2511
YENT393305 YE2563YE2562YE2558YE2560YE2561
STYP99287 STM1171STM1172STM1176STM1174STM1173
SSON300269 SSO_1090SSO_1091SSO_1095SSO_1093SSO_1092
SPRO399741 SPRO_2973SPRO_2972SPRO_2968SPRO_2970SPRO_2971
SHIGELLA FLGNFLGMFLGDFLGBFLGA
SGLO343509 SG2062SG2061SG2059SG2060SG0029
SFLE373384 SFV_1092SFV_1093SFV_1097SFV_1095SFV_1094
SFLE198214 AAN42698.1AAN42699.1AAN42702.1AAN42701.1AAN42700.1
SENT454169 SEHA_C1283SEHA_C1284SEHA_C1288SEHA_C1286SEHA_C1285
SENT321314 SCH_1118SCH_1119SCH_1123SCH_1121SCH_1120
SENT295319 SPA1680SPA1679SPA1675SPA1677SPA1678
SENT220341 STY1210STY1211STY1215STY1213STY1212
SENT209261 T1749T1748T1744T1746T1747
SDYS300267 SDY_2081SDY_2076SDY_2078SDY_2080
SBOY300268 SBO_1994SBO_1993SBO_1989SBO_1991SBO_1992
RSOL267608 RSP0340RSP0344RSP0342RSP0341
PLUM243265 PLU1912PLU1913PLU1917PLU1915PLU1914
JSP375286 MMA_1415MMA_1420MMA_1418MMA_1417
ESP42895 ENT638_1584ENT638_1585ENT638_1589ENT638_1587ENT638_1586
EFER585054 EFER_1859EFER_1858EFER_1854EFER_1856EFER_1857
ECOO157 FLGNFLGMFLGDFLGBFLGA
ECOL83334 ECS1448ECS1449ECS1453ECS1451ECS1450
ECOL585397 ECED1_1214ECED1_1215ECED1_1219ECED1_1217ECED1_1216
ECOL585057 ECIAI39_2093ECIAI39_2092ECIAI39_2088ECIAI39_2090ECIAI39_2091
ECOL585056 ECUMN_1244ECUMN_1245ECUMN_1249ECUMN_1247ECUMN_1246
ECOL585055 EC55989_1183EC55989_1184EC55989_1188EC55989_1186EC55989_1185
ECOL585035 ECS88_1084ECS88_1085ECS88_1089ECS88_1087ECS88_1086
ECOL585034 ECIAI1_1105ECIAI1_1106ECIAI1_1110ECIAI1_1108ECIAI1_1107
ECOL481805 ECOLC_2530ECOLC_2529ECOLC_2525ECOLC_2527ECOLC_2528
ECOL469008 ECBD_2530ECBD_2529ECBD_2525ECBD_2527ECBD_2528
ECOL439855 ECSMS35_2059ECSMS35_2058ECSMS35_2053ECSMS35_2055ECSMS35_2057
ECOL413997 ECB_01066ECB_01067ECB_01071ECB_01069ECB_01068
ECOL409438 ECSE_1133ECSE_1134ECSE_1138ECSE_1136ECSE_1135
ECOL405955 APECO1_152APECO1_153APECO1_157APECO1_155APECO1_154
ECOL364106 UTI89_C1195UTI89_C1196UTI89_C1200UTI89_C1198UTI89_C1197
ECOL362663 ECP_1062ECP_1063ECP_1067ECP_1065ECP_1064
ECOL331111 ECE24377A_1193ECE24377A_1194ECE24377A_1198ECE24377A_1196ECE24377A_1195
ECOL316407 ECK1055:JW1057:B1070ECK1056:JW1058:B1071ECK1060:JW1062:B1075ECK1058:JW1060:B1073ECK1057:JW1059:B1072
ECOL199310 C1339C1340C1344C1342C1341
ECAR218491 ECA1699ECA1700ECA1704ECA1702ECA1701
CSAL290398 CSAL_1981CSAL_1976CSAL_1978CSAL_1979
BSP36773 BCEP18194_A6374BCEP18194_A6369BCEP18194_A6371BCEP18194_A6372
BPET94624 BPET2117BPET2123BPET2121BPET2120
BPER257313 BP1371BP1375BP1373BP1372
BPAR257311 BPP1483BPP1487BPP1485BPP1484
BBRO257310 BB2557BB2561BB2559BB2558
ABAU360910 BAV1686BAV1690BAV1688BAV1687


Organism features enriched in list (features available for 51 out of the 55 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 1.071e-827112
Arrangment:Singles 0.000628836286
Disease:Bubonic_plague 3.389e-766
Disease:Dysentery 3.389e-766
Disease:Gastroenteritis 0.0000281713
Disease:Respiratory_deseases 0.007515322
Disease:Typhoid_fever 0.007515322
Disease:Urinary_tract_infection 0.002325534
GC_Content_Range4:40-60 1.576e-1445224
GC_Content_Range4:60-100 0.00906236145
GC_Content_Range7:50-60 8.529e-1634107
Genome_Size_Range5:2-4 9.595e-82197
Genome_Size_Range5:4-6 1.425e-2449184
Genome_Size_Range9:4-5 3.138e-133096
Genome_Size_Range9:5-6 0.00002711988
Gram_Stain:Gram_Neg 9.275e-1048333
Habitat:Aquatic 0.0011877191
Habitat:Host-associated 0.006670526206
Motility:No 2.035e-61151
Motility:Yes 0.000115536267
Optimal_temp.:28-30 0.001423547
Optimal_temp.:37 0.003067817106
Oxygen_Req:Aerobic 0.00042086185
Oxygen_Req:Facultative 1.950e-1443201
Pathogenic_in:Human 8.755e-735213
Pathogenic_in:No 2.484e-83226
Pathogenic_in:Rodent 0.001423547
Shape:Rod 6.410e-1351347
Temp._range:Mesophilic 0.000180050473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 391
Effective number of orgs (counting one per cluster within 468 clusters): 304

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B1
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP376 Bradyrhizobium sp.1
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G6562   G369   G360   G358   G357   
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WSUC273121 WS1667
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TPEN368408
TKOD69014
TFUS269800
TERY203124
TELO197221
TACI273075
SWOL335541 SWOL_0846
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459 STH3006
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076 SCH4B_3306
SSP387093
SSP321332
SSP321327
SSP292414 TM1040_2978
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807 SRU_2609
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC03052
SMED366394 SMED_0281
SMAR399550
SLAC55218
SHAE279808
SGOR29390
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655 SALA_2909
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSP357808
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_3463
RPAL258594 RPA0644
RMAS416276
RLEG216596 RL0733
RFEL315456
RETL347834 RHE_CH00684
RDEN375451 RD1_0164
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP56811
PSP312153
PSP296591
PSP117 RB12514
PRUM264731
PPEN278197
PNAP365044
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OTSU357244
OCAR504832 OCAR_5209
NWIN323098 NWI_0601
NSP387092 NIS_0621
NSP35761
NSP103690
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_0693
NGON242231
NFAR247156
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP266779 MESO_0274
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLOT266835 MLR2942
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671 LIC_10299
LINT189518 LA0347
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_2749
LBOR355276 LBL_0322
LBIF456481 LEPBI_I0752
LBIF355278 LBF_0729
LACI272621
KPNE272620
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963 JHP1467
HPYL357544 HPAG1_1508
HPY HP1559
HMUK485914
HMOD498761 HM1_2218
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279 HH_1407
HDUC233412
HBUT415426
HAUR316274
HACI382638 HAC_1667
GVIO251221
GTHE420246 GTNG_1069
GKAU235909 GK1216
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DRED349161 DRED_2411
DRAD243230
DOLE96561
DNOD246195
DGEO319795
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_01678
CTEP194439
CSUL444179
CSP501479 CSE45_3469
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_2720
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415 NT01CX_1899
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEI306537
CHYD246194 CHY_0990
CHUT269798
CHOM360107
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDES477974 DAUD_1768
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765 CLL_A0837
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402 CBEI_4262
CACE272562 CAC2165
CABO218497
BXEN266265
BWEI315730 BCERKBAB4_1560
BTRI382640
BTHU412694 BALH_1484
BTHU281309 BT9727_1531
BTHE226186
BSP376 BRADO4885
BQUI283165
BPUM315750 BPUM_1516
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490
BCER572264 BCA_1704
BCER405917 BCE_1763
BCER315749 BCER98_1356
BCER288681 BCE33L1520
BCER226900 BC_1641
BAPH372461
BANT592021 BAA_1748
BANT568206 BAMEG_2912
BANT261594 GBAA1674
BANT260799 BAS1557
BAMY326423 RBAM_016010
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ACEL351607
ABUT367737 ABU_1964
ABOR393595
AAUR290340
AAEO224324 AQ_1184


Organism features enriched in list (features available for 364 out of the 391 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00308451617
Arrangment:Filaments 0.00858761010
Arrangment:Singles 0.0019788163286
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00530541111
Disease:Wide_range_of_infections 0.00530541111
Disease:gastroenteritis 0.0000539113
Endospores:No 0.0000496153211
GC_Content_Range4:0-40 1.191e-14175213
GC_Content_Range4:40-60 5.424e-6115224
GC_Content_Range4:60-100 0.000214773145
GC_Content_Range7:0-30 0.00093763947
GC_Content_Range7:30-40 1.506e-10136166
GC_Content_Range7:50-60 1.295e-841107
GC_Content_Range7:60-70 0.000032964134
Genome_Size_Range5:0-2 5.198e-15135155
Genome_Size_Range5:2-4 0.0000225145197
Genome_Size_Range5:4-6 5.258e-2361184
Genome_Size_Range9:1-2 3.085e-13113128
Genome_Size_Range9:2-3 2.456e-798120
Genome_Size_Range9:4-5 8.813e-123096
Genome_Size_Range9:5-6 1.325e-83188
Genome_Size_Range9:6-8 0.00431811638
Gram_Stain:Gram_Neg 4.570e-25150333
Gram_Stain:Gram_Pos 5.102e-18135150
Habitat:Host-associated 0.0089636140206
Habitat:Multiple 0.001487496178
Motility:No 3.861e-22140151
Motility:Yes 1.696e-29102267
Optimal_temp.:- 0.0069145148257
Optimal_temp.:25-30 2.792e-6219
Optimal_temp.:37 0.000146682106
Oxygen_Req:Anaerobic 0.000883277102
Oxygen_Req:Facultative 0.0000862105201
Oxygen_Req:Microaerophilic 0.0004345418
Salinity:Non-halophilic 0.002680478106
Shape:Coccus 2.350e-127782
Shape:Irregular_coccus 0.00028831717
Shape:Rod 4.473e-12178347
Shape:Sphere 0.00736031719
Shape:Spiral 0.00504561434
Temp._range:Mesophilic 0.0021637283473
Temp._range:Thermophilic 0.00447972935



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73470.7134
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45330.6344
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.5793
RHAMCAT-PWY (rhamnose degradation)91430.5601
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50310.5536
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22190.5229
PWY0-1182 (trehalose degradation II (trehalase))70340.4984
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37240.4963
LYXMET-PWY (L-lyxose degradation)87380.4949
SORBDEG-PWY (sorbitol degradation II)53290.4932
PWY-5833 (CDP-3,6-dideoxyhexose biosynthesis)14140.4872
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112420.4731
ARABCAT-PWY (L-arabinose degradation I)128450.4719
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19160.4713
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121430.4622
PWY-6507 (5-dehydro-4-deoxy-D-glucuronate degradation)76330.4545
PWY0-981 (taurine degradation IV)106390.4463
GLUCARDEG-PWY (D-glucarate degradation I)152470.4424
PWY0-41 (allantoin degradation IV (anaerobic))29190.4415
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176500.4331
ECASYN-PWY (enterobacterial common antigen biosynthesis)191520.4312
PWY-6196 (serine racemization)102370.4281
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218550.4241
AST-PWY (arginine degradation II (AST pathway))120400.4219
MANNIDEG-PWY (mannitol degradation I)99360.4219
PWY-46 (putrescine biosynthesis III)138430.4199
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134420.4154
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135420.4131
KETOGLUCONMET-PWY (ketogluconate metabolism)103360.4098
PHESYN (phenylalanine biosynthesis I)110370.4049
P441-PWY (superpathway of N-acetylneuraminate degradation)63270.4023



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G369   G360   G358   G357   
G65620.9986380.9985010.9986580.998611
G3690.99870.9988640.998943
G3600.9998220.99938
G3580.999489
G357



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PAIRWISE BLAST SCORES:

  G6562   G369   G360   G358   G357   
G65620.0f0----
G369-0.0f0---
G360--0.0f0--
G358---0.0f0-
G357----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G357 G358 G360 G369 G6562 (centered at G357)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6562   G369   G360   G358   G357   
51/62353/623252/623274/62391/623
AAEO224324:0:Tyes---0-
AAVE397945:0:Tyes--310
ABAC204669:0:Tyes--09-
ABAU360910:0:Tyes-0421
ABUT367737:0:Tyes---0-
ACAU438753:0:Tyes--150-
ACRY349163:8:Tyes--02028-
ADEH290397:0:Tyes--09-
AEHR187272:0:Tyes--530
AHYD196024:0:Tyes--025
AMET293826:0:Tyes--010-
AORE350688:0:Tyes--100-
ASAL382245:5:Tyes--108610840
ASP232721:2:Tyes--20-
ASP62928:0:Tyes--023
BABO262698:0:Tno--8650-
BAFZ390236:2:Fyes--010-
BAMB339670:3:Tno--023
BAMB398577:3:Tno--023
BAMY326423:0:Tyes---0-
BANT260799:0:Tno---0-
BANT261594:2:Tno---0-
BANT568206:2:Tyes---0-
BANT592021:2:Tno---0-
BAPH198804:0:Tyes--310
BBAC264462:0:Tyes--010-
BBAC360095:0:Tyes--026-
BBRO257310:0:Tyes-0421
BBUR224326:21:Fno--010-
BCAN483179:0:Tno--9610-
BCEN331271:2:Tno--023
BCEN331272:3:Tyes--023
BCER226900:1:Tyes---0-
BCER288681:0:Tno---0-
BCER315749:1:Tyes---0-
BCER405917:1:Tyes---0-
BCER572264:1:Tno---0-
BCLA66692:0:Tyes--010-
BGAR290434:2:Fyes--010-
BHAL272558:0:Tyes--010-
BHER314723:0:Fyes--010-
BJAP224911:0:Fyes--10430-
BLIC279010:0:Tyes--100-
BMAL243160:1:Tno--420
BMAL320388:1:Tno--420
BMAL320389:1:Tyes--024
BMEL224914:0:Tno--0943-
BMEL359391:0:Tno--8500-
BOVI236:0:Tyes--7660-
BPAR257311:0:Tno-0421
BPER257313:0:Tyes-0421
BPET94624:0:Tyes-0643
BPSE272560:1:Tyes--310
BPSE320372:1:Tno--310
BPSE320373:0:Tno---0-
BPSE320373:1:Tno--3-0
BPUM315750:0:Tyes---0-
BSP107806:2:Tyes--310
BSP36773:2:Tyes5-023
BSP376:0:Tyes--0--
BSUB:0:Tyes--100-
BSUI204722:0:Tyes--9350-
BSUI470137:0:Tno--11370-
BTHA271848:1:Tno--310
BTHU281309:1:Tno---0-
BTHU412694:1:Tno---0-
BTUR314724:0:Fyes--010-
BVIE269482:7:Tyes--023
BWEI315730:4:Tyes---0-
CACE272562:1:Tyes---0-
CAULO:0:Tyes--054-
CBEI290402:0:Tyes--0--
CBOT508765:1:Tyes---0-
CCON360104:2:Tyes--01140-
CCUR360105:0:Tyes--01304-
CDES477974:0:Tyes---0-
CDIF272563:1:Tyes--90-
CFET360106:0:Tyes--0672-
CHYD246194:0:Tyes---0-
CJAP155077:0:Tyes--02-
CJEJ192222:0:Tyes--0459-
CJEJ195099:0:Tno--0579-
CJEJ354242:2:Tyes--0454-
CJEJ360109:0:Tyes--01262-
CJEJ407148:0:Tno--0454-
CNOV386415:0:Tyes---0-
CPHY357809:0:Tyes---0-
CPSY167879:0:Tyes--640
CSAL290398:0:Tyes5-023
CSP501479:7:Fyes--0--
CSP78:2:Tyes--0362-
CTET212717:0:Tyes---0-
CVIO243365:0:Tyes--193019320
DARO159087:0:Tyes--315370
DDES207559:0:Tyes--13740-
DHAF138119:0:Tyes--30-
DPSY177439:2:Tyes--100-
DRED349161:0:Tyes---0-
DSHI398580:5:Tyes--1190-
DVUL882:1:Tyes--11230-
ECAR218491:0:Tyes01532
ECOL199310:0:Tno01532
ECOL316407:0:Tno01532
ECOL331111:6:Tno01532
ECOL362663:0:Tno01532
ECOL364106:1:Tno01532
ECOL405955:2:Tyes01532
ECOL409438:6:Tyes01532
ECOL413997:0:Tno01532
ECOL439855:4:Tno65024
ECOL469008:0:Tno54023
ECOL481805:0:Tno54023
ECOL585034:0:Tno01532
ECOL585035:0:Tno01532
ECOL585055:0:Tno01532
ECOL585056:2:Tno01532
ECOL585057:0:Tno54023
ECOL585397:0:Tno01532
ECOL83334:0:Tno01532
ECOLI:0:Tno01532
ECOO157:0:Tno01532
EFER585054:1:Tyes54023
ESP42895:1:Tyes01532
FNOD381764:0:Tyes--0172-
GKAU235909:1:Tyes---0-
GMET269799:1:Tyes--010-
GOXY290633:5:Tyes--01092-
GSUL243231:0:Tyes--100-
GTHE420246:1:Tyes---0-
GURA351605:0:Tyes--010-
HACI382638:1:Tyes---0-
HARS204773:0:Tyes--023
HCHE349521:0:Tyes--02-
HHAL349124:0:Tyes--02-
HHEP235279:0:Tyes---0-
HMOD498761:0:Tyes---0-
HNEP81032:0:Tyes--09-
HPY:0:Tno---0-
HPYL357544:1:Tyes---0-
HPYL85963:0:Tno---0-
ILOI283942:0:Tyes--02-
JSP290400:1:Tyes--90-
JSP375286:0:Tyes0-532
KRAD266940:2:Fyes--010-
LBIF355278:2:Tyes---0-
LBIF456481:2:Tno---0-
LBOR355276:1:Tyes---0-
LBOR355277:1:Tno---0-
LCHO395495:0:Tyes--02-
LINN272626:1:Tno--014-
LINT189518:1:Tyes---0-
LINT267671:1:Tno---0-
LINT363253:3:Tyes--0293-
LMON169963:0:Tno--014-
LMON265669:0:Tyes--014-
LPNE272624:0:Tno--20-
LPNE297245:1:Fno--20-
LPNE297246:1:Fyes--20-
LPNE400673:0:Tno--20-
LSPH444177:1:Tyes--100-
LWEL386043:0:Tyes--014-
MAQU351348:2:Tyes--20-
MEXT419610:0:Tyes--34830-
MFLA265072:0:Tyes--310
MLOT266835:2:Tyes--0--
MMAG342108:0:Tyes--0109-
MMAR394221:0:Tyes--01248-
MPET420662:1:Tyes--023
MSP266779:3:Tyes--0--
MSP400668:0:Tyes--02-
MSP409:2:Tyes--9159490
MTHE264732:0:Tyes--90-
NEUR228410:0:Tyes--310
NEUT335283:2:Tyes--310
NHAM323097:2:Tyes--0--
NMUL323848:3:Tyes--530
NOCE323261:1:Tyes--02-
NSP387092:0:Tyes---0-
NWIN323098:0:Tyes--0--
OANT439375:4:Tyes--024-
OCAR504832:0:Tyes--0--
OIHE221109:0:Tyes--100-
PAER208963:0:Tyes--02-
PAER208964:0:Tno--20-
PATL342610:0:Tyes--02-
PCAR338963:0:Tyes--010-
PENT384676:0:Tyes--02-
PFLU205922:0:Tyes--02-
PFLU216595:1:Tyes--02-
PFLU220664:0:Tyes--02-
PHAL326442:1:Tyes--20-
PING357804:0:Tyes--02-
PLUM243265:0:Fyes01532
PMEN399739:0:Tyes--02-
PMOB403833:0:Tyes--01566-
PPRO298386:2:Tyes--530
PPUT160488:0:Tno--02-
PPUT351746:0:Tyes--20-
PPUT76869:0:Tno--02-
PSP117:0:Tyes--0--
PSTU379731:0:Tyes--20-
PSYR205918:0:Tyes--02-
PSYR223283:2:Tyes--20-
PTHE370438:0:Tyes--010-
RDEN375451:4:Tyes--0--
RETL347834:5:Tyes--0--
REUT264198:2:Tyes--310
REUT381666:1:Tyes--310
RFER338969:1:Tyes--20-
RLEG216596:6:Tyes--0--
RMET266264:1:Tyes--310
RPAL258594:0:Tyes--0--
RPAL316055:0:Tyes--0373-
RPAL316056:0:Tyes--0219-
RPAL316057:0:Tyes--22920-
RPAL316058:0:Tyes--03028-
RPOM246200:1:Tyes--0--
RRUB269796:1:Tyes--02272-
RSOL267608:0:Tyes-0421
RSPH272943:4:Tyes--02-
RSPH349101:2:Tno--02-
RSPH349102:5:Tyes--02-
SACI56780:0:Tyes--3650-
SALA317655:1:Tyes--0--
SBAL399599:3:Tyes--02-
SBAL402882:1:Tno--02-
SBOY300268:1:Tyes54023
SDEG203122:0:Tyes--02-
SDEN318161:0:Tyes--24020-
SDYS300267:1:Tyes-5024
SENT209261:0:Tno54023
SENT220341:0:Tno01532
SENT295319:0:Tno54023
SENT321314:2:Tno01532
SENT454169:2:Tno01532
SFLE198214:0:Tyes01432
SFLE373384:0:Tno01432
SGLO343509:3:Tyes20892088208620870
SHAL458817:0:Tyes0-75-
SHIGELLA:0:Tno01432
SLOI323850:0:Tyes--20-
SMED366394:3:Tyes--0--
SMEL266834:2:Tyes--0--
SONE211586:1:Tyes--02-
SPEA398579:0:Tno0-75-
SPRO399741:1:Tyes54023
SRUB309807:1:Tyes--0--
SSED425104:0:Tyes--02-
SSON300269:1:Tyes01532
SSP292414:2:Tyes--0--
SSP644076:6:Fyes--0--
SSP94122:1:Tyes--20-
STHE292459:0:Tyes---0-
STYP99287:1:Tyes01532
SWOL335541:0:Tyes---0-
TCRU317025:0:Tyes--02-
TDEN243275:0:Tyes--15490-
TDEN292415:0:Tyes--02-
TDEN326298:0:Tyes--0351-
TLET416591:0:Tyes--17650-
TMAR243274:0:Tyes--0674-
TPAL243276:0:Tyes--3270-
TPET390874:0:Tno--01186-
TPSE340099:0:Tyes--010-
TROS309801:0:Tyes--02-
TSP1755:0:Tyes--010-
TSP28240:0:Tyes--01235-
TTEN273068:0:Tyes--010-
TTUR377629:0:Tyes--530
VCHO:0:Tyes--02-
VCHO345073:1:Tno--02-
VEIS391735:1:Tyes--023
VFIS312309:2:Tyes--02-
VPAR223926:1:Tyes--20-
VVUL196600:2:Tyes--20-
VVUL216895:1:Tno--02-
WSUC273121:0:Tyes---0-
XAXO190486:0:Tyes--02-
XCAM190485:0:Tyes--02-
XCAM314565:0:Tno--20-
XCAM316273:0:Tno--02-
XCAM487884:0:Tno--02-
XORY291331:0:Tno--20-
XORY342109:0:Tyes--20-
XORY360094:0:Tno--40-
YENT393305:1:Tyes54023
YPES187410:5:Tno65023
YPES214092:3:Tno01532
YPES349746:2:Tno01532
YPES360102:3:Tyes01532
YPES377628:2:Tno54023
YPES386656:2:Tno54023
YPSE273123:2:Tno01532
YPSE349747:2:Tno65023
ZMOB264203:0:Tyes--02-



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