CANDIDATE ID: 524

CANDIDATE ID: 524

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9955380e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7659 (mlaC) (b3192)
   Products of gene:
     - G7659-MONOMER (MlaC)
     - ABC-45-CPLX (phospholipid ABC transporter)

- G7216 (mlaA) (b2346)
   Products of gene:
     - G7216-MONOMER (MlaA)

- EG12801 (mlaF) (b3195)
   Products of gene:
     - YRBF-MONOMER (MlaF)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG12800 (mlaE) (b3194)
   Products of gene:
     - YRBE-MONOMER (MlaE)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG12799 (mlaD) (b3193)
   Products of gene:
     - EG12799-MONOMER (MlaD)
     - ABC-45-CPLX (phospholipid ABC transporter)



Back to top


ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 211
Effective number of orgs (counting one per cluster within 468 clusters): 141

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM45
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSP644076 Silicibacter sp. TrichCH4B5
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RMET266264 ncbi Ralstonia metallidurans CH345
RMAS416276 ncbi Rickettsia massiliae MTU54
RFER338969 ncbi Rhodoferax ferrireducens T1185
RFEL315456 ncbi Rickettsia felis URRWXCal25
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RCON272944 ncbi Rickettsia conorii Malish 74
RCAN293613 ncbi Rickettsia canadensis McKiel5
RBEL391896 ncbi Rickettsia bellii OSU 85-3894
RBEL336407 ncbi Rickettsia bellii RML369-C4
RAKA293614 ncbi Rickettsia akari Hartford5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-004
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HNEP81032 Hyphomonas neptunium4
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H5
GMET269799 ncbi Geobacter metallireducens GS-155
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CAULO ncbi Caulobacter crescentus CB154
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBRO257310 ncbi Bordetella bronchiseptica RB505
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ACRY349163 ncbi Acidiphilium cryptum JF-55
ABAU360910 ncbi Bordetella avium 197N5
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  G7659   G7216   EG12801   EG12800   EG12799   
ZMOB264203 ZMO1612ZMO1749ZMO1590ZMO1591ZMO0926
YPSE349747 YPSIP31758_0451YPSIP31758_1396YPSIP31758_0448YPSIP31758_0449YPSIP31758_0450
YPSE273123 YPTB3516YPTB2640YPTB3519YPTB3518YPTB3517
YPES386656 YPDSF_0325YPDSF_2017YPDSF_0322YPDSF_0323YPDSF_0324
YPES377628 YPN_3454YPN_2204YPN_3457YPN_3456YPN_3455
YPES360102 YPA_3731YPA_2101YPA_3728YPA_3729YPA_3730
YPES349746 YPANGOLA_A1143YPANGOLA_A0386YPANGOLA_A1146YPANGOLA_A1145YPANGOLA_A1144
YPES214092 YPO3572YPO2743YPO3575YPO3574YPO3573
YPES187410 Y0143Y1576Y0146Y0145Y0144
YENT393305 YE3749YE1272YE3752YE3751YE3750
XORY360094 XOOORF_5081XOOORF_5083XOOORF_5078XOOORF_5079XOOORF_5080
XORY342109 XOO0278XOO0276XOO0281XOO0280XOO0279
XORY291331 XOO0307XOO0305XOO0310XOO0309XOO0308
XFAS405440 XFASM12_1819XFASM12_1821XFASM12_1816XFASM12_1817XFASM12_1818
XFAS183190 PD_1657PD_1659PD_1654PD_1655PD_1656
XFAS160492 XF0418XF0416XF0421XF0420XF0419
XCAM487884 XCC-B100_4430XCC-B100_4432XCC-B100_4427XCC-B100_4428XCC-B100_4429
XCAM316273 XCAORF_4554XCAORF_4556XCAORF_4551XCAORF_4552XCAORF_4553
XCAM314565 XC_4299XC_4301XC_4296XC_4297XC_4298
XCAM190485 XCC4210XCC4212XCC4207XCC4208XCC4209
XAXO190486 XAC4342XAC4344XAC4339XAC4340XAC4341
VVUL216895 VV1_0682VV1_1970VV1_0685VV1_0684VV1_0683
VVUL196600 VV0458VV2446VV0455VV0456VV0457
VPAR223926 VP2661VP2214VP2664VP2663VP2662
VFIS312309 VF0397VF1815VF0394VF0395VF0396
VEIS391735 VEIS_2401VEIS_2400VEIS_2397VEIS_2398VEIS_2399
VCHO345073 VC0395_A2099VC0395_A1636VC0395_A2102VC0395_A2101VC0395_A2100
VCHO VC2517VC2048VC2520VC2519VC2518
TDEN292415 TBD_1896TBD_1900TBD_1899TBD_1898
TCRU317025 TCR_0982TCR_0055TCR_0979TCR_0980TCR_0981
STYP99287 STM3310STM2392STM3313STM3312STM3311
SSP94122 SHEWANA3_0681SHEWANA3_1371SHEWANA3_0678SHEWANA3_0679SHEWANA3_0680
SSP644076 SCH4B_2647SCH4B_2646SCH4B_1992SCH4B_1993SCH4B_2116
SSP292414 TM1040_2480TM1040_1781TM1040_1780TM1040_1521
SSON300269 SSO_3340SSO_2403SSO_3343SSO_3342SSO_3341
SSED425104 SSED_0736SSED_3037SSED_0733SSED_0734SSED_0735
SPRO399741 SPRO_4357SPRO_3382SPRO_4360SPRO_4359SPRO_4358
SPEA398579 SPEA_3606SPEA_1390SPEA_3609SPEA_3608SPEA_3607
SONE211586 SO_3951SO_3197SO_3954SO_3953SO_3952
SLOI323850 SHEW_3301SHEW_1395SHEW_3304SHEW_3303SHEW_3302
SLAC55218 SL1157_1272SL1157_1273SL1157_2673SL1157_2674SL1157_2120
SHIGELLA YRBCVACJVPSAVPSBVPSC
SHAL458817 SHAL_3695SHAL_1477SHAL_3698SHAL_3697SHAL_3696
SGLO343509 SG0208SG1632SG0205SG0206SG0207
SFUM335543 SFUM_3284SFUM_3199SFUM_0401SFUM_0402SFUM_0403
SFLE373384 SFV_3222SFV_2414SFV_3225SFV_3224SFV_3223
SFLE198214 AAN44698.1AAN43935.1AAN44701.1AAN44700.1AAN44699.1
SENT454169 SEHA_C3607SEHA_C2635SEHA_C3610SEHA_C3609SEHA_C3608
SENT321314 SCH_3248SCH_2394SCH_3251SCH_3250SCH_3249
SENT295319 SPA3177SPA0472SPA3180SPA3179SPA3178
SENT220341 STY3489STY2624STY3492STY3491STY3490
SENT209261 T3227T0472T3230T3229T3228
SDYS300267 SDY_3373SDY_2550SDY_3376SDY_3375SDY_3374
SDEN318161 SDEN_0499SDEN_1355SDEN_0496SDEN_0497SDEN_0498
SBOY300268 SBO_3190SBO_2388SBO_3187SBO_3188SBO_3189
SBAL402882 SHEW185_0695SHEW185_2907SHEW185_0692SHEW185_0693SHEW185_0694
SBAL399599 SBAL195_0725SBAL195_3039SBAL195_0722SBAL195_0723SBAL195_0724
SACI56780 SYN_01266SYN_00410SYN_00411SYN_01264
RSPH349102 RSPH17025_0117RSPH17025_0116RSPH17025_1066RSPH17025_1067RSPH17025_1451
RSPH349101 RSPH17029_2549RSPH17029_2550RSPH17029_1121RSPH17029_1122RSPH17029_1827
RSPH272943 RSP_0890RSP_0891RSP_2458RSP_2459RSP_0194
RSOL267608 RSC2958RSC2959RSC2962RSC2961RSC2960
RRUB269796 RRU_A1528RRU_A0055RRU_A2909RRU_A0408RRU_A2438
RPOM246200 SPO_3726SPO_3727SPO_2672SPO_2671SPO_1007
RMET266264 RMET_3255RMET_3256RMET_3259RMET_3258RMET_3257
RMAS416276 RMA_0132RMA_0131RMA_0135RMA_1143
RFER338969 RFER_2063RFER_2938RFER_2935RFER_2936RFER_2937
RFEL315456 RF_0077RF_0076RF_0081RF_0080RF_0182
REUT381666 H16_A3423H16_A3424H16_A3427H16_A3426H16_A3425
REUT264198 REUT_A3118REUT_A3119REUT_A3122REUT_A3121REUT_A3120
RDEN375451 RD1_0940RD1_3243RD1_3241RD1_2854
RCON272944 RC0124RC0123RC0129RC1106
RCAN293613 A1E_00450A1E_00445A1E_00465A1E_00460A1E_01135
RBEL391896 A1I_00895A1I_00845A1I_00850A1I_05930
RBEL336407 RBE_1331RBE_1341RBE_1340RBE_0368
RAKA293614 A1C_00665A1C_00660A1C_00740A1C_00735A1C_05890
PSYR223283 PSPTO_4444PSPTO_2115PSPTO_4447PSPTO_4446PSPTO_4445
PSYR205918 PSYR_4138PSYR_1910PSYR_4141PSYR_4140PSYR_4139
PSTU379731 PST_1656PST_1037PST_1038PST_1039
PSP312153 PNUC_0100PNUC_0099PNUC_0096PNUC_0097PNUC_0098
PSP296591 BPRO_0797BPRO_0796BPRO_0793BPRO_0794BPRO_0795
PPUT76869 PPUTGB1_0968PPUTGB1_1704PPUTGB1_0965PPUTGB1_0966PPUTGB1_0967
PPUT351746 PPUT_1000PPUT_3579PPUT_0997PPUT_0998PPUT_0999
PPUT160488 PP_0961PP_2163PP_0958PP_0959PP_0960
PPRO298386 PBPRA3245PBPRA0956PBPRA3248PBPRA3247PBPRA3246
PNAP365044 PNAP_0689PNAP_0688PNAP_0685PNAP_0686PNAP_0687
PMUL272843 PM0177PM1501PM0174PM0175PM0176
PMEN399739 PMEN_1927PMEN_0876PMEN_0877PMEN_0878
PLUM243265 PLU4031PLU3203PLU4034PLU4033PLU4032
PING357804 PING_2884PING_3015PING_2887PING_2886PING_2885
PHAL326442 PSHAA2541PSHAA0831PSHAA2544PSHAA2543PSHAA2542
PFLU220664 PFL_1970PFL_0921PFL_0922PFL_0923
PFLU216595 PFLU0891PFLU1581PFLU0888PFLU0889PFLU0890
PFLU205922 PFL_0866PFL_3850PFL_0863PFL_0864PFL_0865
PENT384676 PSEEN1102PSEEN3699PSEEN1099PSEEN1100PSEEN1101
PCAR338963 PCAR_0451PCAR_0450PCAR_2750PCAR_0447PCAR_0449
PATL342610 PATL_0558PATL_3247PATL_0561PATL_0560PATL_0559
PAER208964 PA4453PA2800PA4456PA4455PA4454
PAER208963 PA14_57840PA14_27920PA14_57880PA14_57870PA14_57850
NOCE323261 NOC_2782NOC_2787NOC_2786NOC_2785NOC_2784
NMUL323848 NMUL_A2746NMUL_A1035NMUL_A2749NMUL_A2748NMUL_A2747
NMEN374833 NMCC_0252NMCC_0254NMCC_0249NMCC_0250NMCC_0251
NMEN272831 NMC1935NMC1933NMC1938NMC1937NMC1936
NMEN122587 NMA0488NMA0490NMA0485NMA0486NMA0487
NMEN122586 NMB_1963NMB_1961NMB_1966NMB_1965NMB_1964
NGON242231 NGO2119NGO2121NGO2116NGO2117NGO2118
NEUT335283 NEUT_0854NEUT_1536NEUT_0851NEUT_0852NEUT_0853
NEUR228410 NE2381NE1422NE2384NE2383NE2382
MSUC221988 MS1710MS2239MS1713MS1712MS1711
MSP400668 MMWYL1_2518MMWYL1_2413MMWYL1_2412MMWYL1_2411
MPET420662 MPE_A3097MPE_A3098MPE_A3101MPE_A3100MPE_A3099
MMAG342108 AMB3485AMB0433AMB0331AMB2094AMB2743
MFLA265072 MFLA_0240MFLA_0585MFLA_0237MFLA_0238MFLA_0239
MCAP243233 MCA_2792MCA_2076MCA_1969MCA_1968MCA_1967
MAQU351348 MAQU_2706MAQU_1589MAQU_2709MAQU_2708MAQU_2707
LPNE400673 LPC_2451LPC_1290LPC_2454LPC_2453LPC_2452
LPNE297246 LPP0906LPP1809LPP0903LPP0904LPP0905
LPNE297245 LPL0875LPL1810LPL0872LPL0873LPL0874
LPNE272624 LPG0844LPG1845LPG0841LPG0842LPG0843
LINT363253 LI0235LI0232LI0231LI0233
LCHO395495 LCHO_3390LCHO_3391LCHO_3394LCHO_3393LCHO_3392
KPNE272620 GKPORF_B2937GKPORF_B2043GKPORF_B2940GKPORF_B2939GKPORF_B2938
JSP375286 MMA_3295MMA_3296MMA_3299MMA_3298MMA_3297
ILOI283942 IL0406IL1097IL0403IL0404IL0405
HSOM228400 HSM_1587HSM_1817HSM_1590HSM_1589HSM_1588
HSOM205914 HS_1170HS_1655HS_1173HS_1172HS_1171
HNEP81032 HNE_2105HNE_2920HNE_0724HNE_2253
HINF71421 HI_1084HI_0718HI_1087HI_1086HI_1085
HINF374930 CGSHIEE_06645CGSHIEE_08535CGSHIEE_06630CGSHIEE_06635CGSHIEE_06640
HINF281310 NTHI1247NTHI0849NTHI1250NTHI1249NTHI1248
HHAL349124 HHAL_2117HHAL_0980HHAL_2120HHAL_2119HHAL_2118
HDUC233412 HD_0256HD_0677HD_0259HD_0258HD_0257
HCHE349521 HCH_02650HCH_05314HCH_05313HCH_05312
HARS204773 HEAR3076HEAR3077HEAR3080HEAR3079HEAR3078
GURA351605 GURA_1043GURA_1040GURA_1039GURA_1041
GSUL243231 GSU_2690GSU_0816GSU_0817GSU_0815
GOXY290633 GOX0750GOX0749GOX2126GOX0935GOX1115
GMET269799 GMET_0784GMET_0995GMET_0787GMET_0788GMET_0786
GBET391165 GBCGDNIH1_0204GBCGDNIH1_0205GBCGDNIH1_1453GBCGDNIH1_2219GBCGDNIH1_1735
FTUL458234 FTA_0543FTA_0808FTA_0546FTA_0545FTA_0544
FTUL418136 FTW_0323FTW_0311FTW_0326FTW_0325FTW_0324
FTUL401614 FTN_0325FTN_0322FTN_0328FTN_0327FTN_0326
FTUL393115 FTF1611FTF1591FTF1608FTF1609FTF1610
FTUL393011 FTH_0511FTH_0766FTH_0514FTH_0513FTH_0512
FTUL351581 FTL_0514FTL_1637FTL_0517FTL_0516FTL_0515
FRANT FT.1613FT.1593FT.1610FT.1611
FPHI484022 FPHI_0500FPHI_0503FPHI_0497FPHI_0498FPHI_0499
ESP42895 ENT638_3628ENT638_2885ENT638_3631ENT638_3630ENT638_3629
EFER585054 EFER_3169EFER_0818EFER_3172EFER_3171EFER_3170
ECOO157 YRBCVACJYRBFYRBEYRBD
ECOL83334 ECS4071ECS3229ECS4074ECS4073ECS4072
ECOL585397 ECED1_3850ECED1_2808ECED1_3853ECED1_3852ECED1_3851
ECOL585057 ECIAI39_3687ECIAI39_2499ECIAI39_3690ECIAI39_3689ECIAI39_3688
ECOL585056 ECUMN_3672ECUMN_2686ECUMN_3675ECUMN_3674ECUMN_3673
ECOL585055 EC55989_3610EC55989_2590EC55989_3613EC55989_3612EC55989_3611
ECOL585035 ECS88_3574ECS88_2492ECS88_3577ECS88_3576ECS88_3575
ECOL585034 ECIAI1_3340ECIAI1_2423ECIAI1_3343ECIAI1_3342ECIAI1_3341
ECOL481805 ECOLC_0508ECOLC_1307ECOLC_0505ECOLC_0506ECOLC_0507
ECOL469008 ECBD_0550ECBD_1311ECBD_0547ECBD_0548ECBD_0549
ECOL439855 ECSMS35_3488ECSMS35_2505ECSMS35_3491ECSMS35_3490ECSMS35_3489
ECOL413997 ECB_03057ECB_02272ECB_03060ECB_03059ECB_03058
ECOL409438 ECSE_3476ECSE_2655ECSE_3479ECSE_3478ECSE_3477
ECOL405955 APECO1_3243APECO1_4220APECO1_3240APECO1_3241APECO1_3242
ECOL364106 UTI89_C3628UTI89_C2630UTI89_C3631UTI89_C3630UTI89_C3629
ECOL362663 ECP_3279ECP_2383ECP_3282ECP_3281ECP_3280
ECOL331111 ECE24377A_3679ECE24377A_2642ECE24377A_3683ECE24377A_3682ECE24377A_3681
ECOL316407 ECK3181:JW3159:B3192ECK2340:JW2343:B2346ECK3184:JW3162:B3195ECK3183:JW3161:B3194ECK3182:JW3160:B3193
ECOL199310 C3952C2890C3955C3954C3953
ECAR218491 ECA0298ECA3083ECA0295ECA0296ECA0297
DVUL882 DVU_1243DVU_1242DVU_1245DVU_1246DVU_1244
DSHI398580 DSHI_0141DSHI_0140DSHI_2380DSHI_2379DSHI_1391
DPSY177439 DP0655DP2287DP2288DP2286
DNOD246195 DNO_0856DNO_0650DNO_0859DNO_0858DNO_0857
DDES207559 DDE_2300DDE_2301DDE_2298DDE_2297DDE_2299
DARO159087 DARO_3398DARO_3399DARO_3402DARO_3401DARO_3400
CVIO243365 CV_0446CV_0444CV_0449CV_0448CV_0447
CSP78 CAUL_1575CAUL_1574CAUL_3565CAUL_1577CAUL_1576
CSP501479 CSE45_2919CSE45_2918CSE45_1759CSE45_3923CSE45_0357
CSAL290398 CSAL_2217CSAL_1471CSAL_2220CSAL_2219CSAL_2218
CPSY167879 CPS_4533CPS_1530CPS_4536CPS_4535CPS_4534
CAULO CC3692CC2319CC3695CC3694
BVIE269482 BCEP1808_0397BCEP1808_0396BCEP1808_0393BCEP1808_0394BCEP1808_0395
BTHA271848 BTH_I3000BTH_I3001BTH_I3004BTH_I3003BTH_I3002
BSP36773 BCEP18194_A3516BCEP18194_A3515BCEP18194_A3512BCEP18194_A3513BCEP18194_A3514
BPSE320373 BURPS668_3673BURPS668_3674BURPS668_3677BURPS668_3676BURPS668_3675
BPSE320372 BURPS1710B_A3998BURPS1710B_A3999BURPS1710B_A4002BURPS1710B_A4001BURPS1710B_A4000
BPSE272560 BPSL3146BPSL3147BPSL3150BPSL3149BPSL3148
BPET94624 BPET0144BPET0145BPET0148BPET0147BPET0146
BPER257313 BP3761BP3760BP3757BP3758BP3759
BPAR257311 BPP4261BPP4260BPP4257BPP4258BPP4259
BMAL320389 BMA10247_2772BMA10247_2773BMA10247_2776BMA10247_2775BMA10247_2774
BMAL320388 BMASAVP1_A3232BMASAVP1_A3231BMASAVP1_A3228BMASAVP1_A3229BMASAVP1_A3230
BMAL243160 BMA_2722BMA_2723BMA_2726BMA_2725BMA_2724
BCEN331272 BCEN2424_0418BCEN2424_0417BCEN2424_0414BCEN2424_0415BCEN2424_0416
BCEN331271 BCEN_2689BCEN_2690BCEN_2693BCEN_2692BCEN_2691
BBRO257310 BB4848BB4847BB4844BB4845BB4846
BAMB398577 BAMMC406_0345BAMMC406_0344BAMMC406_0341BAMMC406_0342BAMMC406_0343
BAMB339670 BAMB_0336BAMB_0335BAMB_0332BAMB_0333BAMB_0334
ASP76114 EBA2206EBA1310EBA1313EBA1312EBA1311
ASP62977 ACIAD3241ACIAD3018ACIAD3244ACIAD3243ACIAD3242
ASP62928 AZO0810AZO0809AZO0806AZO0807AZO0808
ASP232721 AJS_0752AJS_0751AJS_0748AJS_0749AJS_0750
ASAL382245 ASA_0306ASA_1374ASA_0309ASA_0308ASA_0307
APLE434271 APJL_1302APJL_1965APJL_1305APJL_1304APJL_1303
APLE416269 APL_1289APL_1918APL_1292APL_1291APL_1290
AHYD196024 AHA_3932AHA_1402AHA_3929AHA_3930AHA_3931
AFER243159 AFE_2865AFE_0982AFE_2868AFE_2867AFE_2866
AEHR187272 MLG_2220MLG_0305MLG_2223MLG_2222MLG_2221
ACRY349163 ACRY_0221ACRY_0220ACRY_3016ACRY_2870ACRY_0171
ABAU360910 BAV3308BAV3307BAV3304BAV3305BAV3306
AAVE397945 AAVE_1017AAVE_1016AAVE_1013AAVE_1014AAVE_1015


Organism features enriched in list (features available for 199 out of the 211 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00002281592
Disease:Bubonic_plague 0.001504166
Disease:Dysentery 0.001504166
Disease:Gastroenteritis 0.00158311013
Disease:None 0.00820921258
Disease:Tularemia 0.004481355
Endospores:No 2.731e-1235211
GC_Content_Range4:0-40 4.100e-1827213
GC_Content_Range4:40-60 6.593e-8106224
GC_Content_Range4:60-100 0.000351366145
GC_Content_Range7:30-40 1.589e-927166
GC_Content_Range7:50-60 2.715e-1065107
GC_Content_Range7:60-70 0.000015866134
Genome_Size_Range5:0-2 5.346e-1220155
Genome_Size_Range5:2-4 0.000058047197
Genome_Size_Range5:4-6 8.131e-18109184
Genome_Size_Range9:1-2 1.078e-720128
Genome_Size_Range9:2-3 0.000381526120
Genome_Size_Range9:4-5 1.316e-95996
Genome_Size_Range9:5-6 1.234e-65088
Genome_Size_Range9:6-8 0.00112252238
Gram_Stain:Gram_Neg 1.152e-42186333
Habitat:Multiple 0.002062975178
Habitat:Specialized 0.0002352753
Motility:No 4.761e-1022151
Motility:Yes 4.226e-9124267
Optimal_temp.:- 0.0046347101257
Optimal_temp.:35-37 6.547e-71313
Optimal_temp.:37 0.003413425106
Oxygen_Req:Anaerobic 2.868e-714102
Oxygen_Req:Facultative 0.000036490201
Pathogenic_in:No 0.000023655226
Pathogenic_in:Plant 0.00167761115
Shape:Coccus 1.035e-61082
Shape:Rod 9.132e-18165347
Shape:Spiral 0.0018485434
Temp._range:Mesophilic 0.0007813175473
Temp._range:Psychrophilic 0.008042679
Temp._range:Thermophilic 5.132e-6135



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 314
Effective number of orgs (counting one per cluster within 468 clusters): 243

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79011
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RSP357808 ncbi Roseiflexus sp. RS-10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
EFAE226185 ncbi Enterococcus faecalis V5830
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/31
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSUB ncbi Bacillus subtilis subtilis 1680
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7659   G7216   EG12801   EG12800   EG12799   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629 TERTU_1079
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124 TERY_3053
TDEN243275
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW0582OR2039
SSP1131 SYNCC9605_2096
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SERY405948 SACE_6866
SEPI176280
SEPI176279
SAVE227882 SAV5902
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RSP357808
RSAL288705
RCAS383372
RALB246199
PTOR263820
PTHE370438
PSP56811
PRUM264731
PPEN278197
PMOB403833
PMAR93060 P9215_15531
PMAR74547 PMT1399
PMAR74546 PMT9312_1422
PMAR59920 PMN2A_0895
PMAR167555 NATL1_17511
PMAR167546 P9301ORF_1539
PMAR167542 P9515ORF_1553
PMAR167540 PMM1324
PMAR167539 PRO_1405
PMAR146891 A9601_15241
PISL384616
PINT246198
PHOR70601
PGIN242619 PG_1034
PFUR186497
PDIS435591 BDI_2401
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OIHE221109
OANT439375 OANT_2108
NWIN323098
NPHA348780
MTHE349307
MTHE264732
MTHE187420
MSYN262723
MSTA339860
MSP189918 MKMS_0986
MSP164757 MJLS_0996
MSP164756 MMCS_0968
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1892
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_5099
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_0704
MBOV233413 MB0674
MBAR269797
MART243272
MAEO419665
MACE188937
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314 LJ_0787
LINN272626
LHEL405566
LGAS324831 LGAS_0545
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP1359
HPYL357544 HPAG1_1449
HPY HP1466
HMUK485914
HMOD498761
HMAR272569
HHEP235279
HBUT415426
HAUR316274
HACI382638
GTHE420246
GKAU235909
GFOR411154
FSP1855
FSP106370
FNUC190304 FN0279
FNOD381764
FMAG334413
FALN326424
ELIT314225 ELI_01300
EFAE226185
DSP255470
DSP216389
DRED349161 DRED_3209
DRAD243230
DHAF138119
DGEO319795
DETH243164
CTRA471473
CTRA471472
CTET212717
CSUL444179
CRUT413404 RMAG_0876
CPRO264201 PC1752
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEI306537 JK1711
CHYD246194 CHY_2422
CHUT269798 CHU_2986
CGLU196627 CG0736
CFEL264202 CF0375
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCON360104 CCC13826_2202
CCAV227941 CCA_00628
CBUR434922 COXBU7E912_0742
CBUR360115 COXBURSA331_A1223
CBUR227377 CBU_0728
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CACE272562
CABO218497 CAB602
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186 BT_3838
BSUI470137 BSUIS_A1063
BSUI204722 BR_1020
BSUB
BSP107806
BQUI283165
BPUM315750
BOVI236 GBOORF1017
BMEL359391 BAB1_1039
BMEL224914 BMEI0964
BLON206672
BLIC279010
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405 BF4084
BFRA272559 BF3899
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179 BCAN_A1035
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
BABO262698 BRUAB1_1025
AYEL322098
AURANTIMONAS
ASP1667
APER272557
AORE350688
ANAE240017
AMET293826
ALAI441768
AFUL224325
ACEL351607
AAUR290340


Organism features enriched in list (features available for 293 out of the 314 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.241e-76892
Arrangment:Clusters 6.564e-61717
Arrangment:Pairs 0.006665667112
Disease:Gastroenteritis 0.0013622113
Disease:Pharyngitis 0.003878688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00046981111
Disease:Wide_range_of_infections 0.00046981111
Disease:bronchitis_and_pneumonitis 0.003878688
Endospores:No 2.612e-11144211
Endospores:Yes 6.515e-124953
GC_Content_Range4:0-40 1.843e-20160213
GC_Content_Range4:40-60 0.000079091224
GC_Content_Range4:60-100 1.396e-942145
GC_Content_Range7:0-30 2.031e-74047
GC_Content_Range7:30-40 7.278e-12120166
GC_Content_Range7:50-60 4.839e-731107
GC_Content_Range7:60-70 1.883e-1134134
Genome_Size_Range5:0-2 6.320e-11112155
Genome_Size_Range5:2-4 2.098e-6125197
Genome_Size_Range5:4-6 3.118e-1549184
Genome_Size_Range5:6-10 1.404e-7747
Genome_Size_Range9:0-1 1.884e-62527
Genome_Size_Range9:1-2 2.407e-687128
Genome_Size_Range9:2-3 9.326e-681120
Genome_Size_Range9:4-5 6.678e-92396
Genome_Size_Range9:5-6 0.00001112688
Genome_Size_Range9:6-8 7.890e-7538
Gram_Stain:Gram_Neg 2.923e-4883333
Gram_Stain:Gram_Pos 1.434e-37139150
Habitat:Multiple 0.000518172178
Habitat:Specialized 0.00050323853
Motility:No 5.242e-9106151
Motility:Yes 9.074e-8103267
Optimal_temp.:- 0.0000712107257
Optimal_temp.:30-37 3.201e-61818
Optimal_temp.:37 0.000565868106
Oxygen_Req:Aerobic 2.702e-765185
Oxygen_Req:Anaerobic 4.906e-1079102
Shape:Coccus 1.036e-96682
Shape:Irregular_coccus 6.564e-61717
Shape:Rod 7.422e-15129347
Shape:Sphere 0.00173321619
Temp._range:Hyperthermophilic 2.112e-62223
Temp._range:Mesophilic 0.0012363224473
Temp._range:Thermophilic 0.00003412935



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
RCAN293613 ncbi Rickettsia canadensis McKiel 0.00182054055
RAKA293614 ncbi Rickettsia akari Hartford 0.00208294165
RFEL315456 ncbi Rickettsia felis URRWXCal2 0.00427374805


Names of the homologs of the genes in the group in each of these orgs
  G7659   G7216   EG12801   EG12800   EG12799   
RCAN293613 A1E_00450A1E_00445A1E_00465A1E_00460A1E_01135
RAKA293614 A1C_00665A1C_00660A1C_00740A1C_00735A1C_05890
RFEL315456 RF_0077RF_0076RF_0081RF_0080RF_0182


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Rickettsialpox 0.005145811
Disease:Spotted-fever_like_illness 0.005145811



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461860.7125
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181720.6981
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002030.6883
PWY-1269 (CMP-KDO biosynthesis I)3252060.6513
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911930.6420
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961940.6367
PWY-5918 (heme biosynthesis I)2721840.6283
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901880.6105
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482070.6088
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861860.6067
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251610.5987
AST-PWY (arginine degradation II (AST pathway))1201100.5965
PWY-5913 (TCA cycle variation IV)3011890.5909
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911450.5908
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951440.5702
PWY-4041 (γ-glutamyl cycle)2791750.5491
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761320.5454
TYRFUMCAT-PWY (tyrosine degradation I)1841350.5404
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491180.5370
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831330.5289
KDOSYN-PWY (KDO transfer to lipid IVA I)1801310.5241
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791300.5200
PWY-5386 (methylglyoxal degradation I)3051790.5136
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391890.5052
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911330.5025
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982030.4816
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491530.4755
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491530.4755
REDCITCYC (TCA cycle variation II)1741210.4692
GLUCONSUPER-PWY (D-gluconate degradation)2291440.4674
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551530.4596
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291780.4523
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81720.4494
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561100.4475
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162030.4472
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261760.4454
GALACTITOLCAT-PWY (galactitol degradation)73660.4353
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116890.4331
PWY-5188 (tetrapyrrole biosynthesis I)4392060.4261
PWY-5028 (histidine degradation II)130950.4254
LIPASYN-PWY (phospholipases)2121310.4238
PWY-5783 (octaprenyl diphosphate biosynthesis)1651110.4237
DAPLYSINESYN-PWY (lysine biosynthesis I)3421770.4169
GLUCARDEG-PWY (D-glucarate degradation I)1521040.4148
PWY0-1182 (trehalose degradation II (trehalase))70620.4112
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001620.4100
PWY0-501 (lipoate biosynthesis and incorporation I)3851890.4091
PWY-3162 (tryptophan degradation V (side chain pathway))94750.4090
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96760.4085
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221990.4068
P601-PWY (D-camphor degradation)95750.4040



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7216   EG12801   EG12800   EG12799   
G76590.9994810.999760.9998040.999835
G72160.9988230.9990690.99911
EG128010.9999490.999827
EG128000.99988
EG12799



Back to top


PAIRWISE BLAST SCORES:

  G7659   G7216   EG12801   EG12800   EG12799   
G76590.0f0----
G7216-0.0f0---
EG12801--0.0f0--
EG12800---0.0f0-
EG12799----0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-45-CPLX (phospholipid ABC transporter) (degree of match pw to cand: 0.800, degree of match cand to pw: 0.800, average score: 0.999)
  Genes in pathway or complex:
             0.9364 0.6867 G7658 (mlaB) G7658-MONOMER (MlaB)
   *in cand* 0.9997 0.9991 EG12799 (mlaD) EG12799-MONOMER (MlaD)
   *in cand* 0.9997 0.9991 EG12800 (mlaE) YRBE-MONOMER (MlaE)
   *in cand* 0.9997 0.9988 EG12801 (mlaF) YRBF-MONOMER (MlaF)
   *in cand* 0.9998 0.9995 G7659 (mlaC) G7659-MONOMER (MlaC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9988 G7216 (mlaA) G7216-MONOMER (MlaA)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12799 EG12800 EG12801 G7659 (centered at EG12800)
G7216 (centered at G7216)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7659   G7216   EG12801   EG12800   EG12799   
212/623238/623306/623317/623240/623
AAEO224324:0:Tyes--8320-
AAVE397945:0:Tyes43012
ABAC204669:0:Tyes--10-
ABAU360910:0:Tyes43012
ABOR393595:0:Tyes0979---
ABUT367737:0:Tyes13321331-0-
ACAU438753:0:Tyes--10-
ACRY349163:8:Tyes5049285927110
ADEH290397:0:Tyes--12820-
AEHR187272:0:Tyes19020190519041903
AFER243159:0:Tyes18590186218611860
AHYD196024:0:Tyes24310242824292430
AMAR234826:0:Tyes---8200
AMAR329726:9:Tyes--01903-
APHA212042:0:Tyes---037
APLE416269:0:Tyes0668321
APLE434271:0:Tno0702321
ASAL382245:5:Tyes01034321
ASP232721:2:Tyes43012
ASP62928:0:Tyes43012
ASP62977:0:Tyes2110214213212
ASP76114:2:Tyes5150321
AVAR240292:3:Tyes--9880-
BABO262698:1:Tno--0--
BAMB339670:3:Tno43012
BAMB398577:3:Tno43012
BBAC264462:0:Tyes--020482311
BBRO257310:0:Tyes43012
BCAN483179:1:Tno--0--
BCEN331271:2:Tno01432
BCEN331272:3:Tyes43012
BFRA272559:1:Tyes---0-
BFRA295405:0:Tno---0-
BJAP224911:0:Fyes--0172-
BMAL243160:1:Tno01432
BMAL320388:1:Tno43012
BMAL320389:1:Tyes01432
BMEL224914:1:Tno--0--
BMEL359391:1:Tno--0--
BOVI236:1:Tyes--0--
BPAR257311:0:Tno43012
BPER257313:0:Tyes43012
BPET94624:0:Tyes01432
BPSE272560:1:Tyes01432
BPSE320372:1:Tno01432
BPSE320373:1:Tno01432
BSP36773:2:Tyes43012
BSP376:0:Tyes--0205-
BSUI204722:1:Tyes--0--
BSUI470137:1:Tno--0--
BTHA271848:1:Tno01432
BTHE226186:0:Tyes---0-
BVIE269482:7:Tyes43012
BXEN266265:1:Tyes02---
CABO218497:0:Tyes---0-
CAULO:0:Tyes-1396013991398
CBUR227377:1:Tyes--0--
CBUR360115:1:Tno--0--
CBUR434922:2:Tno--0--
CCAV227941:1:Tyes---0-
CCHL340177:0:Tyes--01-
CCON360104:2:Tyes-0---
CCUR360105:0:Tyes-805-0-
CFEL264202:1:Tyes---0-
CFET360106:0:Tyes-0-108-
CGLU196627:0:Tyes--0--
CHOM360107:1:Tyes10250--
CHUT269798:0:Tyes---0-
CHYD246194:0:Tyes--0--
CJAP155077:0:Tyes11727350--
CJEI306537:0:Tyes--0--
CJEJ192222:0:Tyes10-261-
CJEJ195099:0:Tno10-242-
CJEJ354242:2:Tyes10-256-
CJEJ360109:0:Tyes01-1623-
CJEJ407148:0:Tno10-262-
CPEL335992:0:Tyes10---
CPRO264201:0:Fyes---0-
CPSY167879:0:Tyes29100291329122911
CRUT413404:0:Tyes-0---
CSAL290398:0:Tyes7680771770769
CSP501479:6:Fyes---0-
CSP501479:7:Fyes10---
CSP501479:8:Fyes--1381-0
CSP78:2:Tyes10201132
CTEP194439:0:Tyes--01-
CVES412965:0:Tyes0236---
CVIO243365:0:Tyes20543
DARO159087:0:Tyes01432
DDES207559:0:Tyes34102
DNOD246195:0:Tyes1960199198197
DOLE96561:0:Tyes127212730--
DPSY177439:2:Tyes-0168516861684
DRED349161:0:Tyes--0--
DSHI398580:5:Tyes10227822771271
DVUL882:1:Tyes10342
ECAN269484:0:Tyes---078
ECAR218491:0:Tyes32800012
ECHA205920:0:Tyes---094
ECOL199310:0:Tno10460104910481047
ECOL316407:0:Tno8250828827826
ECOL331111:6:Tno9900993992991
ECOL362663:0:Tno9050908907906
ECOL364106:1:Tno9950998997996
ECOL405955:2:Tyes9660969968967
ECOL409438:6:Tyes8450848847846
ECOL413997:0:Tno8030806805804
ECOL439855:4:Tno9350938937936
ECOL469008:0:Tno3783012
ECOL481805:0:Tno3819012
ECOL585034:0:Tno9100913912911
ECOL585035:0:Tno10560105910581057
ECOL585055:0:Tno10070101010091008
ECOL585056:2:Tno9870990989988
ECOL585057:0:Tno12100121312121211
ECOL585397:0:Tno10280103110301029
ECOL83334:0:Tno8710874873872
ECOLI:0:Tno8600863862861
ECOO157:0:Tno8790882881880
EFER585054:1:Tyes23460234923482347
ELIT314225:0:Tyes---0-
ERUM254945:0:Tyes---079
ERUM302409:0:Tno---076
ESP42895:1:Tyes7560759758757
FJOH376686:0:Tyes--10-
FNUC190304:0:Tyes-0---
FPHI484022:1:Tyes36012
FRANT:0:Tno1701516-
FSUC59374:0:Tyes--01-
FTUL351581:0:Tno0985321
FTUL393011:0:Tno0217321
FTUL393115:0:Tyes1701516-
FTUL401614:0:Tyes30654
FTUL418136:0:Tno100131211
FTUL458234:0:Tno0228321
GBET391165:0:Tyes01124920151531
GMET269799:1:Tyes0212342
GOXY290633:5:Tyes101368186366
GSUL243231:0:Tyes-1867120
GURA351605:0:Tyes4-102
GVIO251221:0:Tyes--23310-
HARS204773:0:Tyes01432
HCHE349521:0:Tyes-0257125702569
HDUC233412:0:Tyes0373321
HHAL349124:0:Tyes11430114611451144
HINF281310:0:Tyes3570360359358
HINF374930:0:Tyes3339012
HINF71421:0:Tno3600363362361
HNEP81032:0:Tyes-1356215401502
HPY:0:Tno---0-
HPYL357544:1:Tyes---0-
HPYL85963:0:Tno---0-
HSOM205914:1:Tyes0478321
HSOM228400:0:Tno0231321
ILOI283942:0:Tyes3711012
JSP290400:1:Tyes--01998
JSP375286:0:Tyes01432
KPNE272620:2:Tyes8700873872871
LBIF355278:2:Tyes--10-
LBIF456481:2:Tno--10-
LBOR355276:1:Tyes--01-
LBOR355277:1:Tno--10-
LCHO395495:0:Tyes01432
LGAS324831:0:Tyes--0--
LINT189518:1:Tyes--01-
LINT267671:1:Tno--10-
LINT363253:3:Tyes-4102
LJOH257314:0:Tyes--0--
LPNE272624:0:Tno31002012
LPNE297245:1:Fno3925012
LPNE297246:1:Fyes3904012
LPNE400673:0:Tno11390114211411140
MABS561007:1:Tyes--0-693
MAER449447:0:Tyes--0616-
MAQU351348:2:Tyes11080111111101109
MAVI243243:0:Tyes--3796-0
MBOV233413:0:Tno--0--
MBOV410289:0:Tno--0--
MCAP243233:0:Tyes788106210
MEXT419610:0:Tyes--10-
MFLA265072:0:Tyes3347012
MGIL350054:3:Tyes--0--
MLEP272631:0:Tyes--0--
MLOT266835:2:Tyes--01-
MMAG342108:0:Tyes3154102017632412
MMAR394221:0:Tyes--01-
MPET420662:1:Tyes01432
MSME246196:0:Tyes--1011-0
MSP164756:1:Tno--0--
MSP164757:0:Tno--0--
MSP189918:2:Tyes--0--
MSP266779:3:Tyes--10-
MSP400668:0:Tyes-105210
MSP409:2:Tyes--10-
MSUC221988:0:Tyes0542321
MTBCDC:0:Tno--0-1400
MTBRV:0:Tno--0-1325
MTUB336982:0:Tno--0-1322
MTUB419947:0:Tyes--0-1363
MVAN350058:0:Tyes--332-0
MXAN246197:0:Tyes24-10-
NARO279238:0:Tyes-015131514-
NEUR228410:0:Tyes9740977976975
NEUT335283:2:Tyes3677012
NFAR247156:2:Tyes--09613636
NGON242231:0:Tyes35012
NHAM323097:2:Tyes--0596-
NMEN122586:0:Tno20543
NMEN122587:0:Tyes35012
NMEN272831:0:Tno20543
NMEN374833:0:Tno35012
NMUL323848:3:Tyes16950169816971696
NOCE323261:1:Tyes05432
NSEN222891:0:Tyes-227-0-
NSP103690:6:Tyes--03868-
NSP35761:1:Tyes--021322126
NSP387092:0:Tyes--025306
OANT439375:5:Tyes--0--
OCAR504832:0:Tyes--01474-
OTSU357244:0:Fyes-688-0580
PAER208963:0:Tyes24400244324422441
PAER208964:0:Tno16780168116801679
PATL342610:0:Tyes02719321
PCAR338963:0:Tyes43231902
PDIS435591:0:Tyes---0-
PENT384676:0:Tyes32433012
PFLU205922:0:Tyes33015012
PFLU216595:1:Tyes3671012
PFLU220664:0:Tyes-1034012
PGIN242619:0:Tyes--0--
PHAL326442:1:Tyes17500175317521751
PING357804:0:Tyes0129321
PLUM243265:0:Fyes8270830829828
PLUT319225:0:Tyes--01-
PMAR146891:0:Tyes---0-
PMAR167539:0:Tyes---0-
PMAR167540:0:Tyes---0-
PMAR167542:0:Tyes---0-
PMAR167546:0:Tyes---0-
PMAR167555:0:Tyes---0-
PMAR59920:0:Tno---0-
PMAR74546:0:Tyes---0-
PMAR74547:0:Tyes---0-
PMAR93060:0:Tyes---0-
PMEN399739:0:Tyes-1069012
PMUL272843:1:Tyes31327012
PNAP365044:8:Tyes43012
PPRO298386:2:Tyes22800228322822281
PPUT160488:0:Tno31208012
PPUT351746:0:Tyes32579012
PPUT76869:0:Tno3755012
PSP117:0:Tyes--01-
PSP296591:2:Tyes43012
PSP312153:0:Tyes43012
PSTU379731:0:Tyes-614012
PSYR205918:0:Tyes22380224122402239
PSYR223283:2:Tyes22940229722962295
RAKA293614:0:Fyes101615975
RBEL336407:0:Tyes-9899999980
RBEL391896:0:Fno-1001965
RCAN293613:0:Fyes1043136
RCON272944:0:Tno10-61010
RDEN375451:4:Tyes-0216421631797
RETL347834:5:Tyes--01-
REUT264198:3:Tyes01432
REUT381666:2:Tyes01432
RFEL315456:2:Tyes1054109
RFER338969:1:Tyes0875872873874
RLEG216596:6:Tyes--01-
RMAS416276:1:Tyes10-4739
RMET266264:2:Tyes01432
RPAL258594:0:Tyes--0278-
RPAL316055:0:Tyes--0264-
RPAL316056:0:Tyes--02590-
RPAL316057:0:Tyes--2860-
RPAL316058:0:Tyes--2560-
RPOM246200:1:Tyes26632664162416230
RPRO272947:0:Tyes-0-3619
RRIC392021:0:Fno-0-6981
RRIC452659:0:Tyes-0-61011
RRUB269796:1:Tyes1468028463532378
RSOL267608:1:Tyes01432
RSP101510:3:Fyes--0-2718
RSPH272943:4:Tyes1477147801760
RSPH349101:2:Tno1441144201714
RSPH349102:5:Tyes109409411318
RTYP257363:0:Tno-3-0668
SACI56780:0:Tyes-27467450
SAVE227882:1:Fyes--0--
SBAL399599:3:Tyes32376012
SBAL402882:1:Tno32264012
SBOY300268:1:Tyes7580755756757
SCO:2:Fyes--7-0
SDEG203122:0:Tyes20870---
SDEN318161:0:Tyes3874012
SDYS300267:1:Tyes7610764763762
SELO269084:0:Tyes--270-
SENT209261:0:Tno26250262826272626
SENT220341:0:Tno7830786785784
SENT295319:0:Tno26020260526042603
SENT321314:2:Tno8730876875874
SENT454169:2:Tno9280931930929
SERY405948:0:Tyes--0--
SFLE198214:0:Tyes7920795794793
SFLE373384:0:Tno7710774773772
SFUM335543:0:Tyes28562771012
SGLO343509:3:Tyes31464012
SHAL458817:0:Tyes22870229022892288
SHIGELLA:0:Tno7900793792791
SLAC55218:1:Fyes0113811382838
SLOI323850:0:Tyes19770198019791978
SMED366394:3:Tyes--01-
SMEL266834:2:Tyes--01-
SONE211586:1:Tyes7480751750749
SPEA398579:0:Tno23140231723162315
SPRO399741:1:Tyes9900993992991
SRUB309807:1:Tyes--02115-
SSED425104:0:Tyes32396012
SSON300269:1:Tyes8930896895894
SSP1131:0:Tyes---0-
SSP1148:0:Tyes--210-
SSP292414:2:Tyes-9742622610
SSP321327:0:Tyes--0522-
SSP321332:0:Tyes--01380-
SSP387093:0:Tyes--01-
SSP644076:6:Fyes10---
SSP644076:7:Fyes--01123
SSP64471:0:Tyes---19100
SSP84588:0:Tyes---0-
SSP94122:1:Tyes3713012
STYP99287:1:Tyes9130916915914
TCRU317025:0:Tyes9440941942943
TDEN292415:0:Tyes0-432
TDEN326298:0:Tyes-0244245-
TELO197221:0:Tyes--01133-
TERY203124:0:Tyes---0-
TTUR377629:0:Tyes-0---
VCHO:0:Tyes4870490489488
VCHO345073:1:Tno4400443442441
VEIS391735:1:Tyes43012
VFIS312309:2:Tyes31483012
VPAR223926:1:Tyes4790482481480
VVUL196600:2:Tyes32032012
VVUL216895:1:Tno01239321
WPIP80849:0:Tyes---14830
WPIP955:0:Tyes---0109
WSUC273121:0:Tyes--01695-
XAUT78245:1:Tyes--10-
XAXO190486:0:Tyes35012
XCAM190485:0:Tyes35012
XCAM314565:0:Tno35012
XCAM316273:0:Tno35012
XCAM487884:0:Tno35012
XFAS160492:2:Tno20543
XFAS183190:1:Tyes35012
XFAS405440:0:Tno35012
XORY291331:0:Tno20543
XORY342109:0:Tyes20543
XORY360094:0:Tno59013
YENT393305:1:Tyes23890239223912390
YPES187410:5:Tno01461321
YPES214092:3:Tno7890792791790
YPES349746:2:Tno7250728727726
YPES360102:3:Tyes16580165516561657
YPES377628:2:Tno12830128612851284
YPES386656:2:Tno31687012
YPSE273123:2:Tno8720875874873
YPSE349747:2:Tno3936012
ZMOB264203:0:Tyes7128506906910



Back to top