CANDIDATE ID: 534

CANDIDATE ID: 534

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9922880e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7023 (torY) (b1873)
   Products of gene:
     - G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
     - CPLX-63 (trimethylamine N-oxide reductase III)
       Reactions:
        a menaquinol + trimethylamine N-oxide[periplasmic space]  ->  a menaquinone + trimethylamine[periplasmic space] + H2O[periplasmic space]
         In pathways
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)
         PWY0-1347 (NADH to trimethylamine N-oxide electron transfer)

- EG12067 (napA) (b2206)
   Products of gene:
     - NAPA-MONOMER (large subunit of periplasmic nitrate reductase, molybdoprotein)
     - NAPAB-CPLX (molybdoprotein complex)
     - NAP-CPLX (periplasmic nitrate reductase)
       Reactions:
        nitrate[periplasmic space] + a ubiquinol  ->  nitrite[periplasmic space] + a ubiquinone + H2O[periplasmic space]

- EG12061 (napB) (b2203)
   Products of gene:
     - NAPB-MONOMER (small subunit of periplasmic nitrate reductase, cytochrome c550 protein)
     - NAPAB-CPLX (molybdoprotein complex)
     - NAP-CPLX (periplasmic nitrate reductase)
       Reactions:
        nitrate[periplasmic space] + a ubiquinol  ->  nitrite[periplasmic space] + a ubiquinone + H2O[periplasmic space]

- EG12060 (napC) (b2202)
   Products of gene:
     - NAPC-MONOMER (cytochrome c protein)
     - NAP-CPLX (periplasmic nitrate reductase)
       Reactions:
        nitrate[periplasmic space] + a ubiquinol  ->  nitrite[periplasmic space] + a ubiquinone + H2O[periplasmic space]

- EG11815 (torC) (b0996)
   Products of gene:
     - EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
     - TMAOREDUCTI-CPLX (trimethylamine N-oxide reductase I)
       Reactions:
        a menaquinol + trimethylamine N-oxide[periplasmic space]  ->  a menaquinone + trimethylamine[periplasmic space] + H2O[periplasmic space]
         In pathways
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)
         PWY0-1347 (NADH to trimethylamine N-oxide electron transfer)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 116
Effective number of orgs (counting one per cluster within 468 clusters): 74

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
WSUC273121 ncbi Wolinella succinogenes DSM 17405
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.4
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PING357804 ncbi Psychromonas ingrahamii 375
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.5
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
LCHO395495 ncbi Leptothrix cholodnii SP-65
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHEP235279 ncbi Helicobacter hepaticus ATCC 514495
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23965
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DARO159087 ncbi Dechloromonas aromatica RCB5
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJEJ407148 ncbi Campylobacter jejuni jejuni 811165
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1765
CJEJ195099 ncbi Campylobacter jejuni RM12214
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111685
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3814
CFET360106 ncbi Campylobacter fetus fetus 82-405
CCUR360105 ncbi Campylobacter curvus 525.925
CCON360104 ncbi Campylobacter concisus 138265
BXEN266265 ncbi Burkholderia xenovorans LB4005
BSP376 Bradyrhizobium sp.5
BPET94624 Bordetella petrii5
BPAR257311 ncbi Bordetella parapertussis 128225
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BBRO257310 ncbi Bordetella bronchiseptica RB505
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH725
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABUT367737 ncbi Arcobacter butzleri RM40184


Names of the homologs of the genes in the group in each of these orgs
  G7023   EG12067   EG12061   EG12060   EG11815   
YPSE349747 YPSIP31758_1275YPSIP31758_1273YPSIP31758_1274YPSIP31758_1275YPSIP31758_1275
YPSE273123 YPTB2758YPTB2760YPTB2759YPTB2758YPTB2758
YPES386656 YPDSF_2141YPDSF_2143YPDSF_2142YPDSF_2141YPDSF_2141
YPES377628 YPN_1349YPN_1347YPN_1348YPN_1349YPN_1349
YPES360102 YPA_2227YPA_2229YPA_2228YPA_2227YPA_2227
YPES349746 YPANGOLA_A2788YPANGOLA_A2791YPANGOLA_A2789YPANGOLA_A2788YPANGOLA_A2788
YPES214092 YPO3036YPO3038YPO3037YPO3036YPO3036
YPES187410 Y1447Y1446Y1447Y1447
YENT393305 YE1445YE1156YE1157YE1158YE1445
WSUC273121 WS1850WS1178WS1174WS0121WS1850
VVUL216895 VV1_2896VV2_0721VV2_0722VV2_0723VV1_2896
VVUL196600 VV1374VVA1192VVA1193VVA1194VV1374
VPAR223926 VPA0127VPA1199VPA1200VPA1201VP1161
VFIS312309 VFA0189VF1905VF1904VF1903VFA0298
VCHO345073 VC0395_A1539VC0395_0617VC0395_0618VC0395_0619VC0395_A1297
VCHO VC1951VCA0678VCA0679VCA0680VC1693
STYP99287 STM3823STM2259STM2256STM2255STM3823
SSP94122 SHEWANA3_1056SHEWANA3_3430SHEWANA3_1901SHEWANA3_1902SHEWANA3_1056
SSON300269 SSO_1245SSO_2264SSO_2261SSO_2260SSO_1004
SSED425104 SSED_3359SSED_3957SSED_1914SSED_1915SSED_3359
SPRO399741 SPRO_3232SPRO_3486SPRO_3485SPRO_3484SPRO_4219
SPEA398579 SPEA_3342SPEA_2427SPEA_2426SPEA_2425SPEA_3342
SONE211586 SO_1233SO_0848SO_0845SO_1233SO_1233
SMEL266834 SMA1232SMA1236SMA1233SMA1232SMA1232
SMED366394 SMED_5182SMED_5180SMED_5181SMED_5182SMED_5182
SLOI323850 SHEW_2797SHEW_3206SHEW_1771SHEW_1772SHEW_2797
SLAC55218 SL1157_1946SL1157_1942SL1157_1945SL1157_1946SL1157_1946
SHIGELLA YECKNAPANAPBNAPCTORC
SHAL458817 SHAL_3414SHAL_0715SHAL_0712SHAL_3414SHAL_3414
SFLE373384 SFV_1911SFV_2282SFV_2279SFV_2278SFV_1006
SFLE198214 AAN43468.1AAN43809.1AAN43806.1AAN43805.1AAN42626.1
SENT454169 SEHA_C4155SEHA_C2499SEHA_C2496SEHA_C2495SEHA_C4155
SENT321314 SCH_3741SCH_2264SCH_2261SCH_2260SCH_3741
SENT295319 SPA3673SPA0605SPA0608SPA0609SPA3673
SENT220341 STY2481STY2485STY2482STY2481STY2481
SENT209261 T3695T0605T0608T0609T3695
SDYS300267 SDY_0876SDY_0872SDY_0875SDY_0876SDY_0876
SDEN318161 SDEN_1499SDEN_1497SDEN_1498SDEN_1499SDEN_1499
SDEG203122 SDE_0086SDE_0084SDE_0085SDE_0086SDE_0086
SBOY300268 SBO_2235SBO_2101SBO_2104SBO_2105SBO_2235
SBAL402882 SHEW185_3212SHEW185_1936SHEW185_1937SHEW185_1938SHEW185_3212
SBAL399599 SBAL195_3351SBAL195_1943SBAL195_1944SBAL195_1945SBAL195_3351
RSPH349102 RSPH17025_3218RSPH17025_3990RSPH17025_3991RSPH17025_3218RSPH17025_3218
RSPH272943 RSP_3046RSP_4116RSP_4117RSP_4118RSP_3046
RPAL316056 RPC_0656RPC_0952RPC_0953RPC_0656RPC_1749
RPAL316055 RPE_4144RPE_1258RPE_4144RPE_4144
RMET266264 RMET_4061RMET_4063RMET_4062RMET_4061RMET_4061
RFER338969 RFER_4076RFER_2559RFER_4076RFER_4075
REUT381666 PHG213PHG211PHG212PHG213PHG213
REUT264198 REUT_B4765REUT_B4763REUT_B4764REUT_B4765REUT_B4765
PSTU379731 PST_3531PST_1268PST_1267PST_1266PST_3531
PSP56811 PSYCPRWF_0213PSYCPRWF_1548PSYCPRWF_0213PSYCPRWF_0213
PPRO298386 PBPRA1496PBPRA2030PBPRA0854PBPRA2028PBPRA1496
PMUL272843 PM1792PM1594PM1597PM1598PM1792
PMEN399739 PMEN_2983PMEN_2981PMEN_2982PMEN_2983PMEN_2983
PING357804 PING_2172PING_2174PING_2173PING_2172PING_2172
PAER208964 PA1172PA1174PA1173PA1172PA1172
PAER208963 PA14_49270PA14_49250PA14_49260PA14_49270PA14_49270
MSUC221988 MS0587MS2281MS2278MS2277MS0587
MSP409 M446_1017M446_1019M446_1018M446_1017M446_1017
MMAG342108 AMB2686AMB2690AMB2687AMB2686AMB2686
LCHO395495 LCHO_1338LCHO_1343LCHO_1340LCHO_1339LCHO_1338
HSOM228400 HSM_1276HSM_0493HSM_0496HSM_0497HSM_1834
HSOM205914 HS_0807HS_1508HS_1505HS_1504HS_1672
HINF71421 HI_0644HI_0347HI_0348HI_0644
HINF374930 CGSHIEE_08990CGSHIEE_01280CGSHIEE_01265CGSHIEE_01260CGSHIEE_08990
HINF281310 NTHI0467NTHI0463NTHI0466NTHI0467NTHI0467
HHEP235279 HH_0951HH_0158HH_0161HH_0215HH_0951
HDUC233412 HD_1393HD_0074HD_0078HD_0079HD_1393
HCHE349521 HCH_03367HCH_03364HCH_03366HCH_03367HCH_03367
EFER585054 EFER_1191EFER_2296EFER_2293EFER_2292EFER_1191
ECOO157 YECKNAPANAPBNAPCTORC
ECOL83334 ECS2583ECS3095ECS3092ECS3091ECS1151
ECOL585397 ECED1_2142ECED1_2671ECED1_2668ECED1_2667ECED1_1073
ECOL585057 ECIAI39_1176ECIAI39_2344ECIAI39_2341ECIAI39_2340ECIAI39_2158
ECOL585056 ECUMN_2171ECUMN_2541ECUMN_2538ECUMN_2537ECUMN_1178
ECOL585055 EC55989_2052EC55989_2460EC55989_2456EC55989_2455EC55989_1106
ECOL585035 ECS88_1931ECS88_2353ECS88_2350ECS88_2349ECS88_1011
ECOL585034 ECIAI1_1960ECIAI1_2289ECIAI1_2285ECIAI1_2284ECIAI1_1039
ECOL481805 ECOLC_1759ECOLC_1444ECOLC_1447ECOLC_1448ECOLC_2599
ECOL469008 ECBD_1765ECBD_1454ECBD_1457ECBD_1458ECBD_2598
ECOL439855 ECSMS35_1313ECSMS35_2354ECSMS35_2351ECSMS35_2350ECSMS35_2128
ECOL413997 ECB_01844ECB_02133ECB_02130ECB_02129ECB_00999
ECOL409438 ECSE_2108ECSE_2474ECSE_2471ECSE_2470ECSE_1058
ECOL405955 APECO1_923APECO1_4353APECO1_4356APECO1_4357APECO1_89
ECOL364106 UTI89_C2077UTI89_C2484UTI89_C2481UTI89_C2480UTI89_C1060
ECOL362663 ECP_1818ECP_2247ECP_2244ECP_2243ECP_0994
ECOL331111 ECE24377A_2105ECE24377A_2505ECE24377A_2502ECE24377A_2501ECE24377A_1113
ECOL316407 ECK1874:JW1862:B1873ECK2198:JW2194:B2206ECK2195:JW5367:B2203ECK2194:JW2190:B2202ECK0987:JW0981:B0996
ECOL199310 C2287C2745C2741C2739C1132
ECAR218491 ECA1892ECA1896ECA1893ECA1892ECA1892
DSHI398580 DSHI_3161DSHI_3165DSHI_3162DSHI_3161DSHI_3161
DARO159087 DARO_3513DARO_3515DARO_3514DARO_2579DARO_2579
CPSY167879 CPS_1832CPS_1057CPS_1056CPS_1055CPS_1832
CJEJ407148 C8J_0242C8J_0731C8J_0734C8J_1276C8J_0242
CJEJ354242 CJJ81176_0292CJJ81176_0801CJJ81176_0804CJJ81176_1360CJJ81176_0292
CJEJ195099 CJE_0871CJE_0874CJE_1547CJE_1547
CJEJ192222 CJ0265CCJ0780CJ0783CJ1358CCJ0265C
CHOM360107 CHAB381_1716CHAB381_1719CHAB381_0130CHAB381_1513
CFET360106 CFF8240_0138CFF8240_1161CFF8240_1158CFF8240_1243CFF8240_0799
CCUR360105 CCV52592_0390CCV52592_1928CCV52592_1931CCV52592_0336CCV52592_0390
CCON360104 CCC13826_1831CCC13826_0868CCC13826_0865CCC13826_1831CCC13826_1398
BXEN266265 BXE_C0369BXE_C0367BXE_C0368BXE_C0369BXE_C0369
BSP376 BRADO5918BRADO5916BRADO5917BRADO5918BRADO5918
BPET94624 BPET4083BPET4079BPET4082BPET4083BPET4083
BPAR257311 BPP2700BPP2702BPP2701BPP2700BPP2700
BJAP224911 BLR7040BLR7038BLR7039BLR7040BLR7040
BBRO257310 BB2802BB2800BB2801BB2802BB2802
ASP76114 EBA1009EBA1211EBA1009EBA1009
ASP62928 AZO3938AZO3942AZO3939AZO3938AZO3938
ASAL382245 ASA_0266ASA_2771ASA_2768ASA_2767ASA_0266
APLE434271 APJL_0687APJL_1461APJL_1458APJL_1457APJL_0687
APLE416269 APL_0689APL_1429APL_1426APL_1425APL_0689
AHYD196024 AHA_4048AHA_1586AHA_1589AHA_1590AHA_4048
AEHR187272 MLG_1678MLG_1702MLG_1678MLG_1678
ABUT367737 ABU_1142ABU_0358ABU_0355ABU_1142


Organism features enriched in list (features available for 109 out of the 116 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.000034972286
Disease:Bubonic_plague 0.000038166
Disease:Dysentery 0.000038166
Disease:Gastroenteritis 1.177e-81213
Disease:Opportunistic_infections 0.004779845
Disease:chronic_bronchitis 0.006389533
GC_Content_Range4:0-40 8.627e-817213
GC_Content_Range4:40-60 3.413e-969224
GC_Content_Range7:0-30 0.0004532147
GC_Content_Range7:30-40 0.000111216166
GC_Content_Range7:40-50 0.003386332117
GC_Content_Range7:50-60 6.319e-637107
Genome_Size_Range5:0-2 8.745e-612155
Genome_Size_Range5:2-4 6.035e-1110197
Genome_Size_Range5:4-6 4.363e-2076184
Genome_Size_Range9:1-2 0.000644912128
Genome_Size_Range9:2-3 0.00009509120
Genome_Size_Range9:3-4 7.019e-7177
Genome_Size_Range9:4-5 4.049e-114396
Genome_Size_Range9:5-6 3.084e-63388
Gram_Stain:Gram_Neg 2.512e-24105333
Habitat:Multiple 0.002634045178
Motility:No 2.378e-105151
Motility:Yes 1.759e-1181267
Optimal_temp.:35-37 0.0036043713
Oxygen_Req:Aerobic 1.524e-615185
Oxygen_Req:Anaerobic 1.883e-64102
Oxygen_Req:Facultative 1.922e-2080201
Oxygen_Req:Microaerophilic 0.00035001018
Pathogenic_in:Human 0.000015159213
Pathogenic_in:No 0.000611528226
Shape:Coccus 2.485e-6282
Shape:Rod 5.788e-1092347
Temp._range:Mesophilic 0.001256599473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 491
Effective number of orgs (counting one per cluster within 468 clusters): 380

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79011
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP644076 Silicibacter sp. TrichCH4B1
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-11
PPUT351746 ncbi Pseudomonas putida F11
PPUT160488 ncbi Pseudomonas putida KT24401
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW251
PFLU205922 ncbi Pseudomonas fluorescens Pf0-11
PENT384676 ncbi Pseudomonas entomophila L481
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM51
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL11
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785781
JSP375286 ncbi Janthinobacterium sp. Marseille1
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans1
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GURA351605 ncbi Geobacter uraniireducens Rf40
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ESP42895 Enterobacter sp.1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BVIE269482 ncbi Burkholderia vietnamiensis G41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BTHA271848 ncbi Burkholderia thailandensis E2641
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1681
BSP36773 Burkholderia sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6681
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BPSE272560 ncbi Burkholderia pseudomallei K962431
BPER257313 ncbi Bordetella pertussis Tohama I0
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102471
BMAL320388 ncbi Burkholderia mallei SAVP11
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BCEN331272 ncbi Burkholderia cenocepacia HI24241
BCEN331271 ncbi Burkholderia cenocepacia AU 10541
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAMB339670 ncbi Burkholderia ambifaria AMMD1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP11
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7023   EG12067   EG12061   EG12060   EG11815   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884 XCC-B100_2309
XCAM316273 XCAORF_2290
XCAM314565 XC_2175
XCAM190485 XCC2009
XAXO190486
XAUT78245 XAUT_1078
WPIP955
WPIP80849
VEIS391735 VEIS_2595
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX2378
TWHI218496
TWHI203267
TVOL273116 TVN0243
TTUR377629 TERTU_4691
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408 TPEN_0190
TPAL243276
TMAR243274
TLET416591
TKOD69014 TK2076
TFUS269800
TERY203124 TERY_1070
TELO197221 TLR1355
TDEN292415 TBD_2310
TDEN243275
TCRU317025 TCR_1159
TACI273075 TA0425
SWOL335541
STRO369723
STOK273063 ST0081
STHE322159
STHE299768
STHE292459 STH917
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW2464OR1067
SSP64471 GSYN3060
SSP644076 SCH4B_0540
SSP321332 CYB_0040
SSP321327 CYA_0619
SSP292414 TM1040_3190
SSP1148 SLL1454
SSP1131 SYNCC9605_2643
SSOL273057 SSO2824
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808 SH0748
SGOR29390
SGLO343509
SFUM335543 SFUM_3509
SERY405948 SACE_2432
SEPI176280
SEPI176279
SELO269084 SYC0315_D
SCO
SAVE227882 SAV2330
SAUR93062 SACOL2301
SAUR93061 SAOUHSC_02582
SAUR426430 NWMN_2210
SAUR418127 SAHV_2293
SAUR367830 SAUSA300_2258
SAUR359787 SAURJH1_2376
SAUR359786 SAURJH9_2333
SAUR282459 SAS2201
SAUR282458 SAR2393
SAUR273036 SAB2186C
SAUR196620 MW2229
SAUR158879 SA2102
SAUR158878 SAV2309
SARE391037
SALA317655 SALA_1268
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779 SACI_0320
RXYL266117
RTYP257363
RSP357808
RSP101510 RHA1_RO03640
RSOL267608 RSP1219
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_0834
RPAL316058 RPB_1752
RPAL316057
RPAL258594
RMAS416276
RLEG216596 RL1989
RFEL315456
RETL347834 RHE_CH01780
RDEN375451 RD1_4166
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO1039
PTHE370438
PSYR223283 PSPTO_2301
PSYR205918 PSYR_2099
PSP312153 PNUC_1002
PSP296591 BPRO_3279
PSP117 RB378
PRUM264731
PPUT76869 PPUTGB1_1302
PPUT351746 PPUT_4016
PPUT160488 PP_1703
PPEN278197
PNAP365044 PNAP_1404
PMOB403833 PMOB_0386
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619 PG_1821
PFUR186497 PF1521
PFLU220664
PFLU216595 PFLU3426
PFLU205922 PFL_1779
PENT384676 PSEEN1417
PDIS435591 BDI_0108
PCRY335284 PCRYO_1323
PCAR338963
PATL342610 PATL_2532
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
OCAR504832 OCAR_6702
OANT439375
NWIN323098
NSP35761 NOCA_4171
NSP103690 ALR0612
NSEN222891
NPHA348780 NP4226A
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156 NFA51300
NARO279238 SARO_2966
MXAN246197
MVAN350058 MVAN_3491
MTUB419947
MTUB336982
MTHE349307 MTHE_0915
MTHE264732 MOTH_1909
MTHE187420 MTH1552
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP400668 MMWYL1_2813
MSP266779 MESO_1453
MSP189918 MKMS_3291
MSP164757 MJLS_3240
MSP164756 MMCS_3229
MSME246196 MSMEG_4206
MSED399549 MSED_1318
MPUL272635
MPNE272634
MPET420662 MPE_A2319
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1376
MMAR426368 MMARC7_0543
MMAR402880 MMARC5_0295
MMAR394221
MMAR368407 MEMAR_1379
MMAR267377
MLOT266835 MLR2864
MLEP272631
MLAB410358 MLAB_0463
MKAN190192
MJAN243232 MJ_1353
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_3238
MGIL350054 MFLV_3016
MGEN243273
MFLO265311
MFLA265072 MFLA_0317
MEXT419610 MEXT_4582
MCAP340047
MCAP243233 MCA_0590
MBUR259564
MBOV410289
MBOV233413
MBAR269797 MBAR_A1561
MAVI243243 MAV_2075
MART243272
MAQU351348
MAER449447 MAE_53960
MAEO419665 MAEO_0578
MACE188937
MABS561007 MAB_2438
LXYL281090
LWEL386043
LSPH444177 BSPH_3324
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940 KRAD_1331
KPNE272620 GKPORF_B1359
JSP375286 MMA_0403
JSP290400 JANN_3045
ILOI283942
IHOS453591 IGNI_1379
HWAL362976 HQ2211A
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761 HM1_2785
HMAR272569 PNG7318
HHAL349124
HBUT415426 HBUT_1379
HAUR316274 HAUR_2334
HARS204773 HEAR0433
HACI382638
GVIO251221 GLR1571
GURA351605
GTHE420246 GTNG_0464
GSUL243231
GOXY290633
GMET269799 GMET_0295
GKAU235909 GK0459
GFOR411154
GBET391165 GBCGDNIH1_1725
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424 FRAAL5324
ESP42895 ENT638_2321
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_1390
ECHA205920
ECAN269484
DVUL882 DVU_0624
DSP255470
DSP216389
DRED349161 DRED_0700
DRAD243230
DNOD246195
DHAF138119 DSY4078
DGEO319795 DGEO_2746
DETH243164
CVIO243365 CV_2229
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CSAL290398 CSAL_1119
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_1767
CPER195103 CPF_2052
CPER195102 CPE1797
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEI306537
CJAP155077 CJA_2954
CHUT269798 CHU_1320
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CAULO CC0617
CACE272562
CABO218497
BWEI315730 BCERKBAB4_0502
BVIE269482 BCEP1808_5043
BTUR314724
BTRI382640
BTHU412694 BALH_3212
BTHU281309 BT9727_3331
BTHE226186 BT_1418
BTHA271848 BTH_II1172
BSUI470137
BSUI204722
BSUB BSU12160
BSP36773 BCEP18194_B1346
BSP107806
BQUI283165
BPUM315750
BPSE320373 BURPS668_A1752
BPSE320372 BURPS1710B_B0286
BPSE272560 BPSS1241
BPER257313
BOVI236
BMEL359391
BMEL224914
BMAL320389 BMA10247_A1247
BMAL320388 BMASAVP1_0080
BMAL243160 BMA_A1084
BLON206672
BLIC279010 BL01398
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559 BF0360
BCLA66692 ABC0900
BCIC186490
BCER572264 BCA_3667
BCER405917 BCE_3588
BCER315749 BCER98_0505
BCER288681 BCE33L3281
BCER226900 BC_3573
BCEN331272 BCEN2424_4504
BCEN331271 BCEN_3865
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021 BAA_3657
BANT568206 BAMEG_1002
BANT261594 GBAA3631
BANT260799 BAS3367
BAMY326423 RBAM_012270
BAMB398577 BAMMC406_4398
BAMB339670 BAMB_3934
BAFZ390236
BABO262698
AYEL322098
AVAR240292 AVA_4544
AURANTIMONAS
ASP62977 ACIAD1908
ASP232721 AJS_2841
ASP1667 ARTH_4046
APHA212042
APER272557
AORE350688 CLOS_2249
ANAE240017
AMET293826
AMAR329726 AM1_2987
AMAR234826
ALAI441768
AFUL224325
AFER243159
ADEH290397 ADEH_0908
ACRY349163
ACEL351607
ACAU438753 AZC_0679
ABOR393595 ABO_1089
ABAU360910
ABAC204669
AAVE397945 AAVE_2105
AAUR290340
AAEO224324 AQ_217


Organism features enriched in list (features available for 459 out of the 491 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.0000912207286
Disease:Opportunistic_infections 0.007805115
Disease:gastroenteritis 5.794e-8113
Endospores:No 0.0035129178211
Endospores:Yes 1.577e-65353
GC_Content_Range4:0-40 1.802e-8193213
GC_Content_Range4:40-60 8.079e-11145224
GC_Content_Range7:0-30 0.00010884647
GC_Content_Range7:30-40 0.0000702147166
GC_Content_Range7:40-50 0.002322381117
GC_Content_Range7:50-60 3.584e-764107
Genome_Size_Range5:0-2 2.538e-6141155
Genome_Size_Range5:2-4 5.980e-7177197
Genome_Size_Range5:4-6 3.750e-17105184
Genome_Size_Range9:0-1 0.00132662727
Genome_Size_Range9:1-2 0.0003471114128
Genome_Size_Range9:2-3 0.0011927106120
Genome_Size_Range9:3-4 0.00051807177
Genome_Size_Range9:4-5 7.571e-115096
Genome_Size_Range9:5-6 0.00006855588
Gram_Stain:Gram_Neg 3.523e-26215333
Gram_Stain:Gram_Pos 2.448e-17149150
Habitat:Multiple 0.0015196127178
Motility:No 7.890e-10143151
Motility:Yes 8.001e-12177267
Optimal_temp.:35-37 0.0075000613
Oxygen_Req:Aerobic 1.985e-7168185
Oxygen_Req:Anaerobic 0.000521492102
Oxygen_Req:Facultative 7.916e-18117201
Oxygen_Req:Microaerophilic 0.0001896718
Pathogenic_in:Human 0.0007826153213
Pathogenic_in:No 0.0092226188226
Shape:Coccus 1.645e-67982
Shape:Rod 1.631e-7249347
Shape:Spiral 0.00369722034
Temp._range:Mesophilic 0.0091980364473
Temp._range:Psychrophilic 0.003548239
Temp._range:Thermophilic 0.00177323435



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181040.5482
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176890.5150
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50420.4961
ECASYN-PWY (enterobacterial common antigen biosynthesis)191900.4868
GALACTITOLCAT-PWY (galactitol degradation)73500.4668
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961110.4615
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001110.4551
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901090.4547
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911090.4531
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)225940.4473
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195860.4419
GLYCOCAT-PWY (glycogen degradation I)246970.4319
PWY-1269 (CMP-KDO biosynthesis I)3251120.4250
PWY-5913 (TCA cycle variation IV)3011070.4205
PWY0-901 (selenocysteine biosynthesis I (bacteria))230920.4202
PWY-46 (putrescine biosynthesis III)138680.4201
GLUTDEG-PWY (glutamate degradation II)194830.4174
AST-PWY (arginine degradation II (AST pathway))120620.4147
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91520.4093
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.4081
KDOSYN-PWY (KDO transfer to lipid IVA I)180780.4047



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12067   EG12061   EG12060   EG11815   
G70230.9987240.9989590.9994060.999689
EG120670.9996290.999420.998612
EG120610.999580.998876
EG120600.999393
EG11815



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PAIRWISE BLAST SCORES:

  G7023   EG12067   EG12061   EG12060   EG11815   
G70230.0f0--3.3e-363.8e-51
EG12067-0.0f0---
EG12061--0.0f0--
EG120603.3e-36--0.0f03.0e-42
EG118153.8e-51--3.4e-410.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-1347 (NADH to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.118, degree of match cand to pw: 0.400, average score: 0.832)
  Genes in pathway or complex:
             0.7586 0.3765 EG12083 (nuoB) NUOB-MONOMER (NADH:ubiquinone oxidoreductase, chain B)
             0.7775 0.3774 EG12084 (nuoC) NUOC-MONOMER (NADH:ubiquinone oxidoreductase, chain CD)
             0.7647 0.3811 EG12089 (nuoI) NUOI-MONOMER (NADH:ubiquinone oxidoreductase, chain I)
             0.8959 0.7488 EG12086 (nuoE) NUOE-MONOMER (NADH:ubiquinone oxidoreductase, chain E)
             0.8339 0.5472 EG11774 (nuoF) NUOF-MONOMER (NADH:ubiquinone oxidoreductase, chain F)
             0.8747 0.6426 EG12087 (nuoG) NUOG-MONOMER (NADH:ubiquinone oxidoreductase, chain G)
             0.8091 0.5735 EG12093 (nuoN) NUON-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit N)
             0.7994 0.4434 EG11773 (nuoM) NUOM-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit M)
             0.7852 0.4446 EG12092 (nuoL) NUOL-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit L)
             0.7578 0.4162 EG12091 (nuoK) NUOK-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit K)
             0.8007 0.4026 EG12090 (nuoJ) NUOJ-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit J)
             0.7824 0.3806 EG12088 (nuoH) NUOH-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit H)
             0.7651 0.3604 EG12082 (nuoA) NUOA-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit A)
   *in cand* 0.9994 0.9987 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
             0.7399 0.2640 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
             0.6944 0.2487 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
   *in cand* 0.9993 0.9986 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9994 EG12060 (napC) NAPC-MONOMER (cytochrome c protein)
   *in cand* 0.9994 0.9989 EG12061 (napB) NAPB-MONOMER (small subunit of periplasmic nitrate reductase, cytochrome c550 protein)
   *in cand* 0.9993 0.9986 EG12067 (napA) NAPA-MONOMER (large subunit of periplasmic nitrate reductase, molybdoprotein)

- PWY0-1355 (formate to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.200, degree of match cand to pw: 0.400, average score: 0.730)
  Genes in pathway or complex:
             0.6267 0.5689 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
             0.5817 0.3093 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.3748 0.2444 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
             0.4820 0.2251 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
   *in cand* 0.9994 0.9987 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
             0.7399 0.2640 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
             0.6944 0.2487 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
   *in cand* 0.9993 0.9986 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9994 EG12060 (napC) NAPC-MONOMER (cytochrome c protein)
   *in cand* 0.9994 0.9989 EG12061 (napB) NAPB-MONOMER (small subunit of periplasmic nitrate reductase, cytochrome c550 protein)
   *in cand* 0.9993 0.9986 EG12067 (napA) NAPA-MONOMER (large subunit of periplasmic nitrate reductase, molybdoprotein)

- NAPAB-CPLX (molybdoprotein complex) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.400, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9989 EG12061 (napB) NAPB-MONOMER (small subunit of periplasmic nitrate reductase, cytochrome c550 protein)
   *in cand* 0.9993 0.9986 EG12067 (napA) NAPA-MONOMER (large subunit of periplasmic nitrate reductase, molybdoprotein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
   *in cand* 0.9996 0.9994 EG12060 (napC) NAPC-MONOMER (cytochrome c protein)
   *in cand* 0.9994 0.9987 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)

- NAP-CPLX (periplasmic nitrate reductase) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.600, average score: 0.999)
  Genes in pathway or complex:
             0.9967 0.9924 EG12064 (napG) NAPG-MONOMER (ferredoxin-type protein)
             0.9966 0.9919 EG12062 (napH) NAPH-MONOMER (ferredoxin-type protein)
   *in cand* 0.9996 0.9994 EG12060 (napC) NAPC-MONOMER (cytochrome c protein)
   *in cand* 0.9993 0.9986 EG12067 (napA) NAPA-MONOMER (large subunit of periplasmic nitrate reductase, molybdoprotein)
   *in cand* 0.9994 0.9989 EG12061 (napB) NAPB-MONOMER (small subunit of periplasmic nitrate reductase, cytochrome c550 protein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
   *in cand* 0.9994 0.9987 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12060 EG12061 (centered at EG12061)
EG11815 (centered at EG11815)
EG12067 (centered at EG12067)
G7023 (centered at G7023)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7023   EG12067   EG12061   EG12060   EG11815   
126/623295/623115/623131/623130/623
AAEO224324:0:Tyes-0---
AAVE397945:0:Tyes-0---
ABOR393595:0:Tyes-0---
ABUT367737:0:Tyes78530-785
ACAU438753:0:Tyes-0---
ADEH290397:0:Tyes-0---
AEHR187272:0:Tyes024-00
AHYD196024:0:Tyes23520342352
AMAR329726:9:Tyes-0---
AORE350688:0:Tyes-0---
APLE416269:0:Tyes07587557540
APLE434271:0:Tno07907877860
ASAL382245:5:Tyes02415241224110
ASP1667:3:Tyes-0---
ASP232721:2:Tyes-0---
ASP62928:0:Tyes04100
ASP62977:0:Tyes-0---
ASP76114:2:Tyes0113-00
AVAR240292:3:Tyes-0---
BAMB339670:2:Tno-0---
BAMB398577:2:Tno-0---
BAMY326423:0:Tyes-0---
BANT260799:0:Tno-0---
BANT261594:2:Tno-0---
BANT568206:2:Tyes-0---
BANT592021:2:Tno-0---
BBRO257310:0:Tyes20122
BCEN331271:1:Tno-0---
BCEN331272:2:Tyes-0---
BCER226900:1:Tyes-0---
BCER288681:0:Tno-0---
BCER315749:1:Tyes-0---
BCER405917:1:Tyes-0---
BCER572264:1:Tno-0---
BCLA66692:0:Tyes-0---
BFRA272559:1:Tyes---0-
BJAP224911:0:Fyes20122
BLIC279010:0:Tyes-0---
BMAL243160:0:Tno-0---
BMAL320388:0:Tno-0---
BMAL320389:0:Tyes-0---
BPAR257311:0:Tno02100
BPET94624:0:Tyes40344
BPSE272560:0:Tyes-0---
BPSE320372:0:Tno-0---
BPSE320373:0:Tno-0---
BSP36773:1:Tyes-0---
BSP376:0:Tyes20122
BSUB:0:Tyes-0---
BTHA271848:0:Tno-0---
BTHE226186:0:Tyes---0-
BTHU281309:1:Tno-0---
BTHU412694:1:Tno-0---
BVIE269482:6:Tyes-0---
BWEI315730:4:Tyes-0---
BXEN266265:0:Tyes20122
CAULO:0:Tyes-0---
CCON360104:2:Tyes061861501101
CCUR360105:0:Tyes858138213790858
CFET360106:0:Tyes09969931077636
CHOM360107:1:Tyes-1538154101352
CHUT269798:0:Tyes-0---
CHYD246194:0:Tyes-0--451
CJAP155077:0:Tyes-0---
CJEJ192222:0:Tyes050050310770
CJEJ195099:0:Tno-03658658
CJEJ354242:2:Tyes048448710280
CJEJ360109:0:Tyes---00
CJEJ407148:0:Tno050851110680
CPER195102:1:Tyes-0---
CPER195103:0:Tno-0---
CPER289380:3:Tyes-0---
CPSY167879:0:Tyes763210763
CSAL290398:0:Tyes-0---
CSP501479:6:Fyes0---0
CSP501479:8:Fyes-0---
CVIO243365:0:Tyes-0---
DARO159087:0:Tyes94194394200
DDES207559:0:Tyes0--00
DGEO319795:0:Tyes-0---
DHAF138119:0:Tyes-0---
DOLE96561:0:Tyes0--00
DPSY177439:2:Tyes0--00
DRED349161:0:Tyes---0-
DSHI398580:5:Tyes04100
DVUL882:1:Tyes----0
ECAR218491:0:Tyes04100
ECOL199310:0:Tno11221574157015680
ECOL316407:0:Tno8931223122012190
ECOL331111:6:Tno9601341133813370
ECOL362663:0:Tno8171250124712460
ECOL364106:1:Tno10161423142014190
ECOL405955:2:Tyes8431226122312220
ECOL409438:6:Tyes10561431142814270
ECOL413997:0:Tno8291123112011190
ECOL439855:4:Tno0103010271026808
ECOL469008:0:Tno3090341118
ECOL481805:0:Tno3110341143
ECOL585034:0:Tno8971230122712260
ECOL585035:0:Tno8751280127712760
ECOL585055:0:Tno9361336133313320
ECOL585056:2:Tno9831363136013590
ECOL585057:0:Tno0115011471146963
ECOL585397:0:Tno10101526152315220
ECOL83334:0:Tno14531978197519740
ECOLI:0:Tno9101247124412430
ECOO157:0:Tno14031894189118900
EFAE226185:3:Tyes-0---
EFER585054:1:Tyes01090108710860
ESP42895:1:Tyes-0---
FALN326424:0:Tyes-0---
GBET391165:0:Tyes-0---
GKAU235909:1:Tyes-0---
GMET269799:1:Tyes0----
GTHE420246:1:Tyes-0---
GVIO251221:0:Tyes-0---
HARS204773:0:Tyes-0---
HAUR316274:2:Tyes-0---
HBUT415426:0:Tyes-0---
HCHE349521:0:Tyes20122
HDUC233412:0:Tyes11540341154
HHEP235279:0:Tyes8180360818
HINF281310:0:Tyes40344
HINF374930:0:Tyes13514101351
HINF71421:0:Tno293-01293
HMAR272569:7:Tyes-0---
HMOD498761:0:Tyes-0---
HSOM205914:1:Tyes0701698697860
HSOM228400:0:Tno7940341355
HWAL362976:1:Tyes-0---
IHOS453591:0:Tyes-0---
JSP290400:1:Tyes-0---
JSP375286:0:Tyes-0---
KPNE272620:2:Tyes-0---
KRAD266940:2:Fyes-0---
LCHO395495:0:Tyes05210
LSPH444177:1:Tyes-0---
MABS561007:1:Tyes-0---
MAEO419665:0:Tyes-0---
MAER449447:0:Tyes-0---
MAVI243243:0:Tyes-0---
MBAR269797:1:Tyes-0---
MCAP243233:0:Tyes-0---
MEXT419610:0:Tyes-0---
MFLA265072:0:Tyes-0---
MGIL350054:3:Tyes-0---
MHUN323259:0:Tyes-0---
MJAN243232:2:Tyes-0---
MLAB410358:0:Tyes-0---
MLOT266835:2:Tyes-0---
MMAG342108:0:Tyes04100
MMAR368407:0:Tyes-0---
MMAR402880:1:Tyes-0---
MMAR426368:0:Tyes-0---
MMAR444158:0:Tyes-0---
MPET420662:1:Tyes-0---
MSED399549:0:Tyes-0---
MSME246196:0:Tyes-0---
MSP164756:1:Tno-0---
MSP164757:0:Tno-0---
MSP189918:2:Tyes-0---
MSP266779:3:Tyes-0---
MSP400668:0:Tyes-0---
MSP409:2:Tyes02100
MSUC221988:0:Tyes01740173717360
MTHE187420:0:Tyes-0---
MTHE264732:0:Tyes-0---
MTHE349307:0:Tyes-0---
MVAN350058:0:Tyes-0---
NARO279238:0:Tyes-0---
NEUR228410:0:Tyes0--00
NEUT335283:2:Tyes0--00
NFAR247156:2:Tyes-0---
NMUL323848:3:Tyes0--00
NOCE323261:1:Tyes0--00
NPHA348780:2:Tyes-0---
NSP103690:6:Tyes-0---
NSP35761:1:Tyes-0---
NSP387092:0:Tyes-30--
OCAR504832:0:Tyes-0---
PAER208963:0:Tyes20122
PAER208964:0:Tno02100
PATL342610:0:Tyes-0---
PCRY335284:1:Tyes-0---
PDIS435591:0:Tyes---0-
PENT384676:0:Tyes-0---
PFLU205922:0:Tyes-0---
PFLU216595:1:Tyes-0---
PFUR186497:0:Tyes-0---
PGIN242619:0:Tyes---0-
PING357804:0:Tyes02100
PMEN399739:0:Tyes20122
PMOB403833:0:Tyes-0---
PMUL272843:1:Tyes198034198
PNAP365044:8:Tyes-0---
PPRO298386:2:Tyes642117301171642
PPUT160488:0:Tno-0---
PPUT351746:0:Tyes-0---
PPUT76869:0:Tno-0---
PSP117:0:Tyes-0---
PSP296591:2:Tyes-0---
PSP312153:0:Tyes-0---
PSP56811:2:Tyes01339-00
PSTU379731:0:Tyes22502102250
PSYR205918:0:Tyes-0---
PSYR223283:2:Tyes-0---
PTOR263820:0:Tyes-0---
RDEN375451:4:Tyes-0---
RETL347834:5:Tyes-0---
REUT264198:2:Tyes20122
REUT381666:0:Tyes20122
RFER338969:1:Tyes15170-15171516
RLEG216596:6:Tyes-0---
RMET266264:1:Tyes02100
RPAL316055:0:Tyes28590-28592859
RPAL316056:0:Tyes029629701090
RPAL316058:0:Tyes-0---
RPOM246200:1:Tyes-0---
RRUB269796:1:Tyes0--00
RSOL267608:0:Tyes-0---
RSP101510:3:Fyes-0---
RSPH272943:1:Tyes-012-
RSPH272943:3:Tyes0---0
RSPH349101:1:Tno0--00
RSPH349102:3:Tyes-01--
RSPH349102:4:Tyes0--00
SACI330779:0:Tyes-0---
SALA317655:1:Tyes-0---
SAUR158878:1:Tno-0---
SAUR158879:1:Tno-0---
SAUR196620:0:Tno-0---
SAUR273036:0:Tno-0---
SAUR282458:0:Tno-0---
SAUR282459:0:Tno-0---
SAUR359786:1:Tno-0---
SAUR359787:1:Tno-0---
SAUR367830:3:Tno-0---
SAUR418127:0:Tyes-0---
SAUR426430:0:Tno-0---
SAUR93061:0:Fno-0---
SAUR93062:1:Tno-0---
SAVE227882:1:Fyes-0---
SBAL399599:3:Tyes14600121460
SBAL402882:1:Tno13240121324
SBOY300268:1:Tyes122034122
SDEG203122:0:Tyes20122
SDEN318161:0:Tyes20122
SDYS300267:1:Tyes40344
SELO269084:0:Tyes-0---
SENT209261:0:Tno29510342951
SENT220341:0:Tno04100
SENT295319:0:Tno29430342943
SENT321314:2:Tno15044101504
SENT454169:2:Tno16024101602
SERY405948:0:Tyes-0---
SFLE198214:0:Tyes8501205120212010
SFLE373384:0:Tno8491198119511940
SFUM335543:0:Tyes-0---
SHAE279808:0:Tyes-0---
SHAL458817:0:Tyes27813027812781
SHIGELLA:0:Tno7991140113711360
SLAC55218:1:Fyes40344
SLOI323850:0:Tyes10601484011060
SMED366394:1:Tyes20122
SMEL266834:0:Tyes02100
SONE211586:1:Tyes38330383383
SPEA398579:0:Tno949210949
SPRO399741:1:Tyes02642632621003
SSED425104:0:Tyes14972111011497
SSOL273057:0:Tyes-0---
SSON300269:1:Tyes2281195119211910
SSP1131:0:Tyes-0---
SSP1148:0:Tyes-0---
SSP292414:1:Tyes-0---
SSP321327:0:Tyes-0---
SSP321332:0:Tyes-0---
SSP387093:0:Tyes-03--
SSP644076:2:Fyes-0---
SSP64471:0:Tyes-0---
SSP84588:0:Tyes-0---
SSP94122:1:Tyes024428848850
STHE292459:0:Tyes-0---
STOK273063:0:Tyes-0---
STYP99287:1:Tyes15614101561
TACI273075:0:Tyes-0---
TCRU317025:0:Tyes-0---
TDEN292415:0:Tyes-0---
TDEN326298:0:Tyes-03--
TELO197221:0:Tyes-0---
TERY203124:0:Tyes-0---
TKOD69014:0:Tyes-0---
TPEN368408:1:Tyes-0---
TTUR377629:0:Tyes-0---
TVOL273116:0:Tyes-0---
UMET351160:0:Tyes-0---
VCHO:0:Tyes258---0
VCHO:1:Fyes-012-
VCHO345073:0:Tno-012-
VCHO345073:1:Tno239---0
VEIS391735:1:Tyes-0---
VFIS312309:1:Tyes0---109
VFIS312309:2:Tyes-210-
VPAR223926:0:Tyes0108910901091-
VPAR223926:1:Tyes----0
VVUL196600:1:Tyes-012-
VVUL196600:2:Tyes0---0
VVUL216895:0:Tno-012-
VVUL216895:1:Tno0---0
WSUC273121:0:Tyes157697697301576
XAUT78245:1:Tyes-0---
XCAM190485:0:Tyes-0---
XCAM314565:0:Tno-0---
XCAM316273:0:Tno-0---
XCAM487884:0:Tno-0---
YENT393305:1:Tyes286012286
YPES187410:5:Tno1-011
YPES214092:3:Tno02100
YPES349746:2:Tno03100
YPES360102:3:Tyes02100
YPES377628:2:Tno20122
YPES386656:2:Tno02100
YPSE273123:2:Tno02100
YPSE349747:2:Tno20122



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