CANDIDATE ID: 538

CANDIDATE ID: 538

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9944760e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7856 (ulaA) (b4193)
   Products of gene:
     - SGAT-MONOMER (UlaA)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG12554 (sgcA) (b4302)
   Products of gene:
     - SGCA-MONOMER (SgcA)
     - EIISGC (EIISgc)

- EG12495 (ulaC) (b4195)
   Products of gene:
     - YJFU-MONOMER (UlaC)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG12494 (ulaB) (b4194)
   Products of gene:
     - YJFT-MONOMER (UlaB)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG11791 (cmtB) (b2934)
   Products of gene:
     - CMTB-MONOMER (CmtB)
     - CPLX-156 (CmtAB mannitol PTS permease)
       Reactions:
        phosphoenolpyruvate + D-mannitol[periplasmic space]  ->  mannitol-1-phosphate[cytosol] + pyruvate



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 147
Effective number of orgs (counting one per cluster within 468 clusters): 76

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSUI391296 ncbi Streptococcus suis 98HAH335
SSUI391295 ncbi Streptococcus suis 05ZYH335
SSON300269 ncbi Shigella sonnei Ss0464
SPYO370554 ncbi Streptococcus pyogenes MGAS107505
SPYO370553 ncbi Streptococcus pyogenes MGAS20965
SPYO370552 ncbi Streptococcus pyogenes MGAS102705
SPYO370551 ncbi Streptococcus pyogenes MGAS94295
SPYO319701 ncbi Streptococcus pyogenes MGAS61805
SPYO293653 ncbi Streptococcus pyogenes MGAS50055
SPYO286636 ncbi Streptococcus pyogenes MGAS103945
SPYO198466 ncbi Streptococcus pyogenes MGAS3155
SPYO193567 ncbi Streptococcus pyogenes SSI-15
SPYO186103 ncbi Streptococcus pyogenes MGAS82325
SPYO160490 ncbi Streptococcus pyogenes M1 GAS5
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705855
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-65
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-145
SPNE171101 ncbi Streptococcus pneumoniae R65
SPNE170187 ncbi Streptococcus pneumoniae G545
SPNE1313 Streptococcus pneumoniae5
SMUT210007 ncbi Streptococcus mutans UA1595
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SGOR29390 Streptococcus gordonii Challis4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SAGA211110 ncbi Streptococcus agalactiae NEM3165
SAGA208435 ncbi Streptococcus agalactiae 2603V/R5
SAGA205921 ncbi Streptococcus agalactiae A9095
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PACN267747 ncbi Propionibacterium acnes KPA1712024
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
MSYN262723 ncbi Mycoplasma synoviae 535
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP5
MPNE272634 ncbi Mycoplasma pneumoniae M1295
MPEN272633 ncbi Mycoplasma penetrans HF-25
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG14
MHYO295358 ncbi Mycoplasma hyopneumoniae 2325
MHYO262722 ncbi Mycoplasma hyopneumoniae 74485
MHYO262719 ncbi Mycoplasma hyopneumoniae J5
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273434
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53345
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LPLA220668 ncbi Lactobacillus plantarum WCFS14
LMON265669 ncbi Listeria monocytogenes 4b F23655
LMON169963 ncbi Listeria monocytogenes EGD-e5
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82934
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LINN272626 ncbi Listeria innocua Clip112625
LCAS321967 ncbi Lactobacillus casei ATCC 3344
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
FMAG334413 ncbi Finegoldia magna ATCC 293284
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354695
EFAE226185 ncbi Enterococcus faecalis V5835
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131294
CDIF272563 ncbi Clostridium difficile 6305
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BHAL272558 ncbi Bacillus halodurans C-1255
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L5
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis4


Names of the homologs of the genes in the group in each of these orgs
  G7856   EG12554   EG12495   EG12494   EG11791   
YPSE349747 YPSIP31758_1437YPSIP31758_1440YPSIP31758_1440YPSIP31758_1440
YPSE273123 YPTB2602YPTB2600YPTB2600YPTB2600
YPES386656 YPDSF_1978YPDSF_1976YPDSF_1976YPDSF_1976
YPES377628 YPN_2165YPN_2161YPN_2161YPN_2161
YPES360102 YPA_2060YPA_2058YPA_2058YPA_2058
YPES349746 YPANGOLA_A0344YPANGOLA_A0342YPANGOLA_A0342YPANGOLA_A0342
YPES214092 YPO2782YPO2569YPO2569YPO2569
YPES187410 Y1615Y1618Y1618Y1618
YENT393305 YE1328YE1330YE1330YE1330
VVUL216895 VV2_1080VV2_0860VV2_1081VV2_1080VV2_0860
VVUL196600 VVA1604VVA1331VVA1605VVA1604VVA1331
VPAR223926 VPA0229VPA0231VPA0231VPA0230VPA0500
VFIS312309 VFA0129VFA0060VFA0060VFA0128VFA0060
VCHO345073 VC0395_0983VC0395_0984VC0395_0984VC0395_0983VC0395_0984
VCHO VCA0246VCA0245VCA0245VCA0246VCA0245
TTEN273068 TTE0304TTE0303TTE0303TTE0305TTE0303
TSP1755 TETH514_0238TETH514_0237TETH514_0237TETH514_0239TETH514_0237
TPSE340099 TETH39_1982TETH39_1983TETH39_1983TETH39_1981TETH39_1983
STYP99287 STM4383STM1616STM4385STM4384STM2344
STHE292459 STH2308STH2312STH2312STH2309STH2312
SSUI391296 SSU98_2066SSU98_0188SSU98_2064SSU98_2065SSU98_2064
SSUI391295 SSU05_2063SSU05_0187SSU05_2061SSU05_2062SSU05_2061
SSON300269 SSO_3088SSO_4377SSO_4376SSO_3088
SPYO370554 MGAS10750_SPY0154MGAS10750_SPY1758MGAS10750_SPY0156MGAS10750_SPY0155MGAS10750_SPY1758
SPYO370553 MGAS2096_SPY0156MGAS2096_SPY1687MGAS2096_SPY0158MGAS2096_SPY0157MGAS2096_SPY1687
SPYO370552 MGAS10270_SPY0150MGAS10270_SPY1732MGAS10270_SPY0152MGAS10270_SPY0151MGAS10270_SPY1732
SPYO370551 MGAS9429_SPY0150MGAS9429_SPY1665MGAS9429_SPY0152MGAS9429_SPY0151MGAS9429_SPY1665
SPYO319701 M28_SPY0146M28_SPY1652M28_SPY0148M28_SPY0147M28_SPY1652
SPYO293653 M5005_SPY0148M5005_SPY1664M5005_SPY0150M5005_SPY0149M5005_SPY1664
SPYO286636 M6_SPY0194M6_SPY1672M6_SPY0196M6_SPY0195M6_SPY1672
SPYO198466 SPYM3_0135SPYM3_1680SPYM3_0137SPYM3_0136SPYM3_1680
SPYO193567 SPS0138SPS1682SPS0140SPS0139SPS1682
SPYO186103 SPYM18_0173SPYM18_2018SPYM18_0175SPYM18_0174SPYM18_2018
SPYO160490 SPY0174SPY1952SPY0176SPY0175SPY1952
SPRO399741 SPRO_2256SPRO_2253SPRO_2253SPRO_2253
SPNE488221 SP70585_2124SP70585_2122SP70585_2122SP70585_2123SP70585_2122
SPNE487214 SPH_2191SPH_2189SPH_2189SPH_2190SPH_2189
SPNE487213 SPT_2033SPT_2031SPT_2031SPT_2032SPT_2031
SPNE171101 SPR1849SPR1847SPR1847SPR1848SPR1847
SPNE170187 SPN20046SPN20049SPN20049SPN20047SPN20049
SPNE1313 SPJ_2044SPJ_2042SPJ_2042SPJ_2043SPJ_2042
SMUT210007 SMU_270SMU_272SMU_272SMU_271SMU_272
SHIGELLA SGATPTXAPTXASGABPTXA
SGOR29390 SGO_0423SGO_0421SGO_0421SGO_0421
SFLE373384 SFV_4349SFV_4351SFV_4351SFV_4350SFV_4351
SFLE198214 AAN45765.1AAN45767.1AAN45767.1AAN45766.1AAN45767.1
SENT454169 SEHA_C4801SEHA_C1794SEHA_C4803SEHA_C4802SEHA_C2585
SENT321314 SCH_4257SCH_1612SCH_4259SCH_4258SCH_2345
SENT295319 SPA4200SPA1253SPA4202SPA4201SPA0520
SENT220341 STY4739STY1448STY4741STY4740STY2574
SENT209261 T4434T1525T4436T4435T0520
SDYS300267 SDY_4362SDY_4364SDY_4364SDY_4363SDY_3143
SBOY300268 SBO_4262SBO_3055SBO_4260SBO_4261SBO_3055
SAUR93062 SACOL0400SACOL0402SACOL0402SACOL0402
SAUR93061 SAOUHSC_00310SAOUHSC_00312SAOUHSC_00312SAOUHSC_00312
SAUR426430 NWMN_0322NWMN_0324NWMN_0324NWMN_0324
SAUR418127 SAHV_0326SAHV_0328SAHV_0328SAHV_0328
SAUR367830 SAUSA300_0330SAUSA300_0332SAUSA300_0332SAUSA300_0332
SAUR359787 SAURJH1_0388SAURJH1_0390SAURJH1_0390SAURJH1_0390
SAUR359786 SAURJH9_0378SAURJH9_0380SAURJH9_0380SAURJH9_0380
SAUR282459 SAS0306SAS0308SAS0308SAS0308
SAUR282458 SAR0326SAR0328SAR0328SAR0328
SAUR273036 SAB0278CSAB0280CSAB0280CSAB0280C
SAUR196620 MW0306MW0308MW0308MW0308
SAUR158879 SA0318SA0320SA0320SA0320
SAUR158878 SAV0329SAV0331SAV0331SAV0331
SAGA211110 GBS1856GBS1854GBS1854GBS1855GBS1854
SAGA208435 SAG_1815SAG_1813SAG_1813SAG_1814SAG_1813
SAGA205921 SAK_1835SAK_1833SAK_1833SAK_1834SAK_1833
PPRO298386 PBPRB0273PBPRB0274PBPRB0274PBPRB0273PBPRB0274
PMUL272843 PM0764PM0765PM0765PM0764PM0765
PLUM243265 PLU1981PLU1979PLU1979PLU1979
PING357804 PING_2055PING_2057PING_2057PING_2057
PACN267747 PPA0446PPA0447PPA0447PPA0447
OIHE221109 OB3414OB3416OB3416OB3415OB3416
MSYN262723 MS53_0026MS53_0028MS53_0028MS53_0682MS53_0028
MSUC221988 MS0022MS0021MS0021MS0022MS0149
MPUL272635 MYPU_5940MYPU_5960MYPU_5960MYPU_5950MYPU_5960
MPNE272634 MPN496MPN494MPN494MPN495MPN494
MPEN272633 MYPE7220MYPE4480MYPE7190MYPE7200MYPE7190
MMYC272632 MSC_0395MSC_0394MSC_0394MSC_0394
MHYO295358 MHP388MHP386MHP386MHP387MHP386
MHYO262722 MHP7448_0376MHP7448_0374MHP7448_0374MHP7448_0375MHP7448_0374
MHYO262719 MHJ_0372MHJ_0370MHJ_0370MHJ_0371MHJ_0370
MCAP340047 MCAP_0590MCAP_0591MCAP_0591MCAP_0591
LXYL281090 LXX04670LXX04670LXX04680LXX04670
LWEL386043 LWE2598LWE2600LWE2600LWE2599LWE2601
LSPH444177 BSPH_1870BSPH_1872BSPH_1872BSPH_1872
LPLA220668 LP_3136LP_3542LP_3542LP_3138
LMON265669 LMOF2365_2621LMOF2365_2785LMOF2365_2623LMOF2365_2622LMOF2365_2785
LMON169963 LMO2649LMO2797LMO1973LMO2650LMO2797
LMES203120 LEUM_1996LEUM_1997LEUM_1997LEUM_1997
LLAC272622 LACR_1735LACR_1737LACR_1737LACR_1737
LINN272626 LIN2798LIN2929LIN2800LIN2799LIN2929
LCAS321967 LSEI_2737LSEI_0324LSEI_0324LSEI_0324
KPNE272620 GKPORF_B3946GKPORF_A0094GKPORF_B3948GKPORF_B3947GKPORF_A0094
HDUC233412 HD_1860HD_1859HD_1859HD_1860HD_1859
GKAU235909 GK2016GK2018GK2018GK2018
FMAG334413 FMG_1538FMG_1540FMG_1540FMG_1540
ESP42895 ENT638_2844ENT638_2846ENT638_2846ENT638_2846
EFER585054 EFER_4246EFER_2865EFER_4248EFER_4247EFER_2865
EFAE226185 EF_1127EF_2966EF_2966EF_1128EF_2966
ECOO157 SGATPTXAPTXASGABCMTB
ECOL83334 ECS5169ECS5171ECS5171ECS5170ECS3809
ECOL585397 ECED1_4980ECED1_4982ECED1_4982ECED1_4981ECED1_3395
ECOL585057 ECIAI39_4658ECIAI39_3352ECIAI39_4660ECIAI39_4659ECIAI39_3352
ECOL585056 ECUMN_4726ECUMN_4901ECUMN_4728ECUMN_4727ECUMN_3283
ECOL585055 EC55989_4750EC55989_4926EC55989_4752EC55989_4751EC55989_3226
ECOL585035 ECS88_4779ECS88_4913ECS88_4781ECS88_4780ECS88_3215
ECOL585034 ECIAI1_4426ECIAI1_3059ECIAI1_4428ECIAI1_4427ECIAI1_3059
ECOL481805 ECOLC_3820ECOLC_3818ECOLC_3818ECOLC_3819ECOLC_0777
ECOL469008 ECBD_3841ECBD_3737ECBD_3839ECBD_3840ECBD_0805
ECOL439855 ECSMS35_4664ECSMS35_4666ECSMS35_4666ECSMS35_4665ECSMS35_3075
ECOL413997 ECB_04060ECB_04167ECB_04062ECB_04061ECB_02764
ECOL409438 ECSE_4491ECSE_3202ECSE_4493ECSE_4492ECSE_3202
ECOL405955 APECO1_2199APECO1_3596APECO1_3596APECO1_3596
ECOL364106 UTI89_C4793UTI89_C3321UTI89_C4795UTI89_C4794UTI89_C3321
ECOL362663 ECP_4438ECP_2927ECP_4440ECP_4439ECP_2927
ECOL331111 ECE24377A_4753ECE24377A_3268ECE24377A_4755ECE24377A_4754ECE24377A_3268
ECOL316407 ECK4189:JW5744:B4193ECK4291:JW4264:B4302ECK4191:JW4153:B4195ECK4190:JW4152:B4194ECK2929:JW2901:B2934
ECOL199310 C5281C0336C5284C5283C3516
ECAR218491 ECA2354ECA3773ECA2356ECA3773
CPER289380 CPR_0491CPR_0489CPR_0489CPR_0490CPR_0489
CPER195103 CPF_0645CPF_0501CPF_0501CPF_0646CPF_0501
CPER195102 CPE0523CPE0521CPE0521CPE0522CPE0521
CGLU196627 CG3365CG3366CG3366CG3366
CDIP257309 DIP2333DIP2332DIP2332DIP2332
CDIF272563 CD3629CD3631CD3631CD2326CD3631
CBOT536232 CLM_2362CLM_2364CLM_2364CLM_2364
CBOT515621 CLJ_B2358CLJ_B2360CLJ_B2360CLJ_B2360
CBOT508765 CLL_A3265CLL_A3266CLL_A3532CLL_A3264CLL_A3532
CBOT498213 CLD_2485CLD_2483CLD_2483CLD_2486
CBOT441772 CLI_2197CLI_2199CLI_2199CLI_2199
CBOT441771 CLC_2094CLC_2096CLC_2096CLC_2096
CBOT441770 CLB_2089CLB_2091CLB_2091CLB_2091
CBOT36826 CBO2150CBO2152CBO2152CBO2152
CBEI290402 CBEI_2739CBEI_2741CBEI_2738CBEI_2740CBEI_0525
BPUM315750 BPUM_1756BPUM_1758BPUM_1758BPUM_1757BPUM_1758
BLIC279010 BL01776BL01774BL01774BL01774
BHAL272558 BH0223BH0220BH0220BH0222BH0193
BCLA66692 ABC0947ABC3501ABC0884ABC0946ABC0945
BCER315749 BCER98_2009BCER98_2011BCER98_2011BCER98_2011
BCER288681 BCE33L2662BCE33L2664BCE33L2664BCE33L2663BCE33L2664
ASAL382245 ASA_4218ASA_4216ASA_4216ASA_4216
APLE434271 APJL_1732APJL_1731APJL_1731APJL_1732APJL_1731
APLE416269 APL_1700APL_1699APL_1699APL_1700APL_1699
AHYD196024 AHA_0171AHA_0173AHA_0173AHA_0173


Organism features enriched in list (features available for 139 out of the 147 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 6.457e-114892
Arrangment:Clusters 0.00004061217
Arrangment:Pairs 7.269e-1256112
Disease:Botulism 0.000728855
Disease:Bubonic_plague 0.000169066
Disease:Dysentery 0.000169066
Disease:Gastroenteritis 0.00006121013
Disease:None 0.0099305758
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0000669911
Disease:Urinary_tract_infection 0.003125844
Disease:Wide_range_of_infections 1.037e-71111
Disease:endocarditis 0.003125844
Disease:pneumonia 0.0015658812
Endospores:No 0.000577166211
Endospores:Yes 0.00135192253
GC_Content_Range4:0-40 0.000108369213
GC_Content_Range4:40-60 0.001205968224
GC_Content_Range4:60-100 1.455e-172145
GC_Content_Range7:0-30 0.00157202047
GC_Content_Range7:50-60 0.000941438107
GC_Content_Range7:60-70 7.194e-162134
Genome_Size_Range5:0-2 0.001300524155
Genome_Size_Range5:4-6 0.000016364184
Genome_Size_Range5:6-10 0.0000244147
Genome_Size_Range9:1-2 0.000991118128
Genome_Size_Range9:4-5 0.00001054096
Genome_Size_Range9:6-8 0.0002791138
Gram_Stain:Gram_Neg 0.006503568333
Gram_Stain:Gram_Pos 4.472e-1268150
Habitat:Aquatic 0.0000509891
Habitat:Host-associated 0.000908364206
Habitat:Multiple 0.002699555178
Habitat:Specialized 0.0010599453
Motility:No 0.000211952151
Optimal_temp.:- 0.000055842257
Optimal_temp.:20-30 0.009026457
Optimal_temp.:30-35 0.000910167
Optimal_temp.:30-37 1.290e-61418
Optimal_temp.:37 1.018e-849106
Oxygen_Req:Aerobic 8.919e-178185
Oxygen_Req:Facultative 6.612e-35109201
Pathogenic_in:Human 1.209e-1895213
Pathogenic_in:No 4.907e-1221226
Pathogenic_in:Rodent 0.009026457
Pathogenic_in:Swine 0.000728855
Salinity:Non-halophilic 4.047e-746106
Shape:Coccus 7.647e-73882
Temp._range:Mesophilic 6.009e-7131473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 466
Effective number of orgs (counting one per cluster within 468 clusters): 384

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)1
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL11
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPET420662 ncbi Methylibium petroleiphilum PM10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BVIE269482 ncbi Burkholderia vietnamiensis G40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2640
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.0
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPSE320373 ncbi Burkholderia pseudomallei 6680
BPSE320372 ncbi Burkholderia pseudomallei 1710b0
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-60
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7856   EG12554   EG12495   EG12494   EG11791   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TSP28240
TROS309801
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSP94122
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPEA398579
SONE211586
SMEL266834
SMED366394
SMAR399550
SLOI323850
SLAC55218
SHAL458817
SHAE279808 SH0233
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO SCO0136
SBAL402882
SBAL399599
SAVE227882
SARE391037
SALA317655
SACI56780
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSP101510
RSOL267608
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFER338969
RFEL315456
REUT381666
REUT264198
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSYR223283
PSYR205918
PSTU379731
PSP56811
PSP312153
PSP296591
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPEN278197
PNAP365044
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PFLU205922
PENT384676
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964
PAER208963
PAER178306
PABY272844
OTSU357244
OCAR504832
OANT439375 OANT_4120
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058 MVAN_5589
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSTA339860
MSP409
MSP400668 MMWYL1_2419
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPET420662
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHUN323259
MGIL350054 MFLV_1219
MGEN243273
MFLO265311 MFL643
MFLA265072
MEXT419610
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LLAC272623
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566 LHV_1844
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA1777
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HCHE349521
HBUT415426
HARS204773
HACI382638
GVIO251221
GURA351605
GTHE420246 GTNG_1845
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195 DNO_0610
DHAF138119
DGEO319795
DETH243164
DDES207559
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78 CAUL_4961
CSP501479
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO CC3596
CACE272562
CABO218497
BXEN266265
BWEI315730
BVIE269482
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848
BSUI470137
BSUI204722
BSUB
BSP376
BSP36773
BSP107806
BQUI283165
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BJAP224911
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264
BCER226900
BCEN331272
BCEN331271
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAMB398577
BAMB339670
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAVE397945
AAUR290340
AAEO224324


Organism features enriched in list (features available for 435 out of the 466 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 4.781e-114292
Arrangment:Clusters 0.0000802517
Arrangment:Pairs 1.559e-1450112
Disease:Gastroenteritis 0.0001100313
Disease:Pneumonia 0.0024129412
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0001148211
Endospores:No 0.0001159139211
Endospores:Yes 0.00130673053
GC_Content_Range4:0-40 0.0001677141213
GC_Content_Range4:40-60 0.0017867153224
GC_Content_Range4:60-100 2.748e-15140145
GC_Content_Range7:0-30 0.00050332547
GC_Content_Range7:50-60 0.000408666107
GC_Content_Range7:60-70 6.956e-16131134
Genome_Size_Range5:0-2 0.0002789131155
Genome_Size_Range5:4-6 0.0000429118184
Genome_Size_Range5:6-10 0.00008334547
Genome_Size_Range9:1-2 0.0002476110128
Genome_Size_Range9:4-5 8.242e-65496
Genome_Size_Range9:6-8 0.00091883638
Gram_Stain:Gram_Neg 0.0042794261333
Gram_Stain:Gram_Pos 2.023e-1377150
Habitat:Aquatic 0.00001308391
Habitat:Host-associated 0.0011768139206
Habitat:Multiple 0.0015361119178
Habitat:Specialized 0.00047204953
Motility:No 0.000075195151
Optimal_temp.:- 0.0000362212257
Optimal_temp.:25-30 0.00346061919
Optimal_temp.:30-35 0.001308017
Optimal_temp.:30-37 2.985e-6418
Optimal_temp.:37 2.805e-954106
Oxygen_Req:Aerobic 6.378e-14172185
Oxygen_Req:Facultative 2.624e-3191201
Pathogenic_in:Human 4.847e-17116213
Pathogenic_in:No 8.029e-12202226
Salinity:Non-halophilic 3.945e-758106
Shape:Coccus 1.480e-64382
Shape:Irregular_coccus 0.00634901717
Shape:Spiral 0.00003373434
Temp._range:Hyperthermophilic 0.00841002223
Temp._range:Mesophilic 4.448e-7334473
Temp._range:Thermophilic 0.00786583235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 9
Effective number of orgs (counting one per cluster within 468 clusters): 7

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MPNE272634 ncbi Mycoplasma pneumoniae M129 1.128e-6945
MHYO295358 ncbi Mycoplasma hyopneumoniae 232 1.628e-61015
MHYO262719 ncbi Mycoplasma hyopneumoniae J 1.799e-61035
MHYO262722 ncbi Mycoplasma hyopneumoniae 7448 1.890e-61045
MSYN262723 ncbi Mycoplasma synoviae 53 2.083e-61065
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP 5.883e-61305
MPEN272633 ncbi Mycoplasma penetrans HF-2 0.00001581585
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG1 0.00288661684
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 27343 0.00302701704


Names of the homologs of the genes in the group in each of these orgs
  G7856   EG12554   EG12495   EG12494   EG11791   
MPNE272634 MPN496MPN494MPN494MPN495MPN494
MHYO295358 MHP388MHP386MHP386MHP387MHP386
MHYO262719 MHJ_0372MHJ_0370MHJ_0370MHJ_0371MHJ_0370
MHYO262722 MHP7448_0376MHP7448_0374MHP7448_0374MHP7448_0375MHP7448_0374
MSYN262723 MS53_0026MS53_0028MS53_0028MS53_0682MS53_0028
MPUL272635 MYPU_5940MYPU_5960MYPU_5960MYPU_5950MYPU_5960
MPEN272633 MYPE7220MYPE4480MYPE7190MYPE7200MYPE7190
MMYC272632 MSC_0395MSC_0394MSC_0394MSC_0394
MCAP340047 MCAP_0590MCAP_0591MCAP_0591MCAP_0591


Organism features enriched in list (features available for 9 out of the 9 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.00154179286
Disease:Enzootic_pneumonia 0.000212222
Endospores:No 0.00009549211
GC_Content_Range4:0-40 0.00010409213
GC_Content_Range7:0-30 8.364e-9847
Genome_Size_Range5:0-2 5.574e-69155
Genome_Size_Range9:0-1 4.185e-7627
Gram_Stain:Gram_Neg 0.00617419333
Habitat:Host-associated 0.00007659206
Motility:No 0.00142487151
Optimal_temp.:37 1.630e-79106
Oxygen_Req:Facultative 0.00006119201
Pathogenic_in:Swine 0.000025035
Salinity:Non-halophilic 1.630e-79106
Shape:Sphere 4.584e-15919



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121940.6254
MANNIDEG-PWY (mannitol degradation I)99810.5960
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134960.5924
PWY0-301 (L-ascorbate degradation, anaerobic)84730.5886
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135960.5886
PWY0-1314 (fructose degradation)2241260.5762
LYXMET-PWY (L-lyxose degradation)87720.5614
P441-PWY (superpathway of N-acetylneuraminate degradation)63580.5409
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391230.5178
PWY-5480 (pyruvate fermentation to ethanol I)109770.5103
PWY-5493 (reductive monocarboxylic acid cycle)2431220.5012
SUCUTIL-PWY (sucrose degradation I)124790.4710
SORBDEG-PWY (sorbitol degradation II)53470.4674
PWY0-522 (lipoate salvage and modification)2201100.4595
ARABCAT-PWY (L-arabinose degradation I)128790.4566
GLYCEROLMETAB-PWY (glycerol degradation V)116740.4528
P122-PWY (heterolactic fermentation)119750.4512
PWY-5497 (purine nucleotides degradation IV (anaerobic))122760.4498
LACTOSECAT-PWY (lactose and galactose degradation I)71540.4431
PWY0-1296 (purine ribonucleosides degradation)3161330.4419
MANNCAT-PWY (D-mannose degradation)3081310.4410
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561410.4354
RHAMCAT-PWY (rhamnose degradation)91600.4124
PWY-1861 (formaldehyde assimilation II (RuMP Cycle))71510.4074
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50410.4063
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37340.4042
METHIONINE-DEG1-PWY (methionine degradation I (to homocysteine))3157-.5091



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12554   EG12495   EG12494   EG11791   
G78560.9994850.999620.9994740.999472
EG125540.999640.9990610.999669
EG124950.9994140.999637
EG124940.999004
EG11791



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PAIRWISE BLAST SCORES:

  G7856   EG12554   EG12495   EG12494   EG11791   
G78560.0f0----
EG12554-0.0f01.0e-18-2.1e-18
EG12495-1.0e-180.0f0-6.0e-21
EG12494---0.0f0-
EG11791-1.0e-169.0e-18-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- EIISGA (L-ascorbate transporting phosphotransferase system) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.600, average score: 0.502)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9994 EG12495 (ulaC) YJFU-MONOMER (UlaC)
   *in cand* 0.9994 0.9990 EG12494 (ulaB) YJFT-MONOMER (UlaB)
             0.2809 0.0395 EG10788 (ptsH) PTSH-MONOMER (HPr)
             0.2958 0.1111 EG10789 (ptsI) PTSI-MONOMER (PTS enzyme I)
   *in cand* 0.9996 0.9995 G7856 (ulaA) SGAT-MONOMER (UlaA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG11791 (cmtB) CMTB-MONOMER (CmtB)
   *in cand* 0.9996 0.9991 EG12554 (sgcA) SGCA-MONOMER (SgcA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12494 EG12495 G7856 (centered at EG12494)
EG12554 (centered at EG12554)
EG11791 (centered at EG11791)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7856   EG12554   EG12495   EG12494   EG11791   
149/623158/623162/62397/623156/623
AHYD196024:0:Tyes022-2
APLE416269:0:Tyes10010
APLE434271:0:Tno10010
ASAL382245:5:Tyes200-0
BCER288681:0:Tno02212
BCER315749:1:Tyes022-2
BCER405917:1:Tyes0--1-
BCLA66692:0:Tyes63264506261
BHAL272558:0:Tyes302727290
BLIC279010:0:Tyes200-0
BPUM315750:0:Tyes02212
CAULO:0:Tyes-0---
CBEI290402:0:Tyes21782180217721790
CBOT36826:1:Tno022-2
CBOT441770:0:Tyes022-2
CBOT441771:0:Tno022-2
CBOT441772:1:Tno022-2
CBOT498213:1:Tno133-0
CBOT508765:1:Tyes122270227
CBOT515621:2:Tyes022-2
CBOT536232:0:Tno022-2
CDIF272563:1:Tyes13131315131501315
CDIP257309:0:Tyes100-0
CGLU196627:0:Tyes011-1
CMIC31964:2:Tyes-00-0
CMIC443906:2:Tyes-00-0
CNOV386415:0:Tyes-00-0
CPER195102:1:Tyes20010
CPER195103:0:Tno143001440
CPER289380:3:Tyes20010
CSAL290398:0:Tyes-00--
CSP78:2:Tyes-0---
CTET212717:0:Tyes-00-0
DNOD246195:0:Tyes-0---
ECAR218491:0:Tyes014502-1450
ECOL199310:0:Tno48470485048493110
ECOL316407:0:Tno12481350125012490
ECOL331111:6:Tno14280143014290
ECOL362663:0:Tno14950149714960
ECOL364106:1:Tno14560145814570
ECOL405955:2:Tyes140400-0
ECOL409438:6:Tyes13320133413330
ECOL413997:0:Tno13221424132413230
ECOL439855:4:Tno15151517151715160
ECOL469008:0:Tno30192919301730180
ECOL481805:0:Tno30513049304930500
ECOL585034:0:Tno13290133113300
ECOL585035:0:Tno14941618149614950
ECOL585055:0:Tno14891666149114900
ECOL585056:2:Tno14211581142314220
ECOL585057:0:Tno12960129812970
ECOL585397:0:Tno15371539153915380
ECOL83334:0:Tno14071409140914080
ECOLI:0:Tno12761381127812770
ECOO157:0:Tno13711373137313720
EFAE226185:3:Tyes01733173311733
EFER585054:1:Tyes13500135213510
ESP42895:1:Tyes022-2
FMAG334413:1:Tyes022-2
GKAU235909:1:Tyes022-2
GTHE420246:1:Tyes--0--
HAUR316274:2:Tyes--0-0
HDUC233412:0:Tyes10010
KPNE272620:0:Tyes-0--0
KPNE272620:2:Tyes0-21-
LACI272621:0:Tyes--0--
LCAS321967:1:Tyes233800-0
LHEL405566:0:Tyes--0--
LINN272626:1:Tno012921129
LLAC272622:5:Tyes022-2
LMES203120:1:Tyes011-1
LMON169963:0:Tno7078550708855
LMON265669:0:Tyes016421164
LPLA220668:0:Tyes0313313-2
LSPH444177:1:Tyes022-2
LWEL386043:0:Tyes02213
LXYL281090:0:Tyes-0010
MCAP340047:0:Tyes011-1
MFLO265311:0:Tyes0----
MGIL350054:3:Tyes--0--
MHYO262719:0:Tyes20010
MHYO262722:0:Tno20010
MHYO295358:0:Tno20010
MMYC272632:0:Tyes100-0
MPEN272633:0:Tyes2810278279278
MPNE272634:0:Tyes20010
MPUL272635:0:Tyes02212
MSP400668:0:Tyes-0---
MSUC221988:0:Tyes1001128
MSYN262723:0:Tyes0226702
MVAN350058:0:Tyes--0--
OANT439375:4:Tyes--0--
OIHE221109:0:Tyes02212
PACN267747:0:Tyes011-1
PING357804:0:Tyes022-2
PLUM243265:0:Fyes200-0
PMUL272843:1:Tyes01101
PPRO298386:1:Tyes01101
SAGA205921:0:Tno20010
SAGA208435:0:Tno20010
SAGA211110:0:Tyes20010
SAUR158878:1:Tno022-2
SAUR158879:1:Tno022-2
SAUR196620:0:Tno022-2
SAUR273036:0:Tno022-2
SAUR282458:0:Tno022-2
SAUR282459:0:Tno022-2
SAUR359786:1:Tno022-2
SAUR359787:1:Tno022-2
SAUR367830:3:Tno022-2
SAUR418127:0:Tyes022-2
SAUR426430:0:Tno022-2
SAUR93061:0:Fno022-2
SAUR93062:1:Tno022-2
SBOY300268:1:Tyes11470114511460
SCO:2:Fyes0----
SDYS300267:1:Tyes11151117111711160
SENT209261:0:Tno3735949373737360
SENT220341:0:Tno30140301630151017
SENT295319:0:Tno3534703353635350
SENT321314:2:Tno2698027002699743
SENT454169:2:Tno2874028762875760
SFLE198214:0:Tyes02212
SFLE373384:0:Tno02212
SGLO343509:3:Tyes-00-0
SGOR29390:0:Tyes200-0
SHAE279808:0:Tyes----0
SHIGELLA:0:Tno02212
SMUT210007:0:Tyes02212
SPNE1313:0:Tyes20010
SPNE170187:0:Tyes20010
SPNE171101:0:Tno20010
SPNE487213:0:Tno20010
SPNE487214:0:Tno20010
SPNE488221:0:Tno20010
SPRO399741:1:Tyes300-0
SPYO160490:0:Tno01401211401
SPYO186103:0:Tno01530211530
SPYO193567:0:Tno01571211571
SPYO198466:0:Tno01545211545
SPYO286636:0:Tno01508211508
SPYO293653:0:Tno01529211529
SPYO319701:0:Tyes01519211519
SPYO370551:0:Tno01535211535
SPYO370552:0:Tno01602211602
SPYO370553:0:Tno01551211551
SPYO370554:0:Tyes01624211624
SSAP342451:2:Tyes--0-0
SSON300269:1:Tyes-0121012090
SSUI391295:0:Tyes19000189818991898
SSUI391296:0:Tyes19040190219031902
STHE292459:0:Tyes04414
STYP99287:1:Tyes2750027522751726
TPSE340099:0:Tyes12202
TSP1755:0:Tyes10020
TTEN273068:0:Tyes10020
VCHO:1:Fyes10010
VCHO345073:0:Tno01101
VFIS312309:1:Tyes6900680
VPAR223926:0:Tyes0221271
VVUL196600:1:Tyes27302742730
VVUL216895:0:Tno20402052040
YENT393305:1:Tyes022-2
YPES187410:5:Tno033-3
YPES214092:3:Tno20500-0
YPES349746:2:Tno200-0
YPES360102:3:Tyes200-0
YPES377628:2:Tno400-0
YPES386656:2:Tno200-0
YPSE273123:2:Tno200-0
YPSE349747:2:Tno033-3



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