CANDIDATE ID: 544

CANDIDATE ID: 544

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9922290e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6575 (lolE) (b1118)
   Products of gene:
     - YCFW-MONOMER (LolE)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- G6574 (lolD) (b1117)
   Products of gene:
     - YCFV-MONOMER (LolD)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- G6573 (lolC) (b1116)
   Products of gene:
     - YCFU-MONOMER (LolC)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- G6568 (ycfP) (b1108)
   Products of gene:
     - G6568-MONOMER (conserved protein)

- EG11619 (mfd) (b1114)
   Products of gene:
     - EG11619-MONOMER (transcription-repair coupling factor)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 245
Effective number of orgs (counting one per cluster within 468 clusters): 170

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SALA317655 ncbi Sphingopyxis alaskensis RB22564
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16224
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS104
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA4
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)4
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CAULO ncbi Caulobacter crescentus CB154
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHEN283166 ncbi Bartonella henselae Houston-14
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5834
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  G6575   G6574   G6573   G6568   EG11619   
YPSE349747 YPSIP31758_1602YPSIP31758_1601YPSIP31758_1600YPSIP31758_1593YPSIP31758_1598
YPSE273123 YPTB2440YPTB2441YPTB2442YPTB2448YPTB2443
YPES386656 YPDSF_1821YPDSF_1822YPDSF_1823YPDSF_1831YPDSF_1824
YPES377628 YPN_2004YPN_2005YPN_2006YPN_2013YPN_2007
YPES360102 YPA_1897YPA_1898YPA_1899YPA_1906YPA_1900
YPES349746 YPANGOLA_A2861YPANGOLA_A2862YPANGOLA_A2863YPANGOLA_A2819YPANGOLA_A2864
YPES214092 YPO1628YPO1627YPO1626YPO1616YPO1625
YPES187410 Y1787Y1786Y1785Y1776Y1784
YENT393305 YE1712YE1711YE1710YE1706YE1709
XORY360094 XOOORF_2342XOOORF_2343XOOORF_2342XOOORF_1413
XORY342109 XOO2182XOO2181XOO2182XOO1373
XORY291331 XOO2305XOO2304XOO2305XOO1472
XFAS405440 XFASM12_0384XFASM12_0385XFASM12_0384XFASM12_0039
XFAS183190 PD_0356PD_0357PD_0356PD_0033
XFAS160492 XF1076XF1077XF1076XF0045
XCAM487884 XCC-B100_2053XCC-B100_2054XCC-B100_2053XCC-B100_1463
XCAM316273 XCAORF_2392XCAORF_2391XCAORF_2392XCAORF_3058
XCAM314565 XC_1988XC_1989XC_1988XC_1416
XCAM190485 XCC2126XCC2125XCC2126XCC2698
XAXO190486 XAC2081XAC2082XAC2081XAC2858
XAUT78245 XAUT_4462XAUT_4461XAUT_4462XAUT_4262
VVUL216895 VV1_2082VV1_2081VV1_2080VV1_2072VV1_2078
VVUL196600 VV2361VV2362VV2363VV2369VV2365
VPAR223926 VP0979VP0978VP0977VP0969VP0975
VFIS312309 VFA0464VFA0463VFA0462VF1142VFA0459
VEIS391735 VEIS_3181VEIS_3180VEIS_3181VEIS_4359
VCHO345073 VC0395_A1472VC0395_A1473VC0395_A1474VC0395_A1482VC0395_A1476
VCHO VC1882VC1883VC1884VC1892VC1886
TTUR377629 TERTU_1755TERTU_1756TERTU_1755TERTU_1948
TDEN292415 TBD_1761TBD_1760TBD_1761TBD_1656
TCRU317025 TCR_1172TCR_1173TCR_1172TCR_1168
STYP99287 STM1219STM1218STM1217STM1210STM1216
SSP94122 SHEWANA3_2285SHEWANA3_2286SHEWANA3_2287SHEWANA3_2292SHEWANA3_2289
SSON300269 SSO_1138SSO_1137SSO_1136SSO_1128SSO_1134
SSED425104 SSED_2829SSED_2830SSED_2831SSED_2836SSED_2833
SPRO399741 SPRO_2003SPRO_2002SPRO_2001SPRO_1925SPRO_1998
SPEA398579 SPEA_1547SPEA_1546SPEA_1545SPEA_1540SPEA_1543
SONE211586 SO_2259SO_2258SO_2257SO_2251SO_2255
SMEL266834 SMC01935SMC01376SMC01935SMC04450
SMED366394 SMED_0919SMED_0920SMED_0919SMED_1399
SLOI323850 SHEW_1634SHEW_1633SHEW_1632SHEW_1627SHEW_1630
SLAC55218 SL1157_0055SL1157_0053SL1157_0055SL1157_2698
SHIGELLA YCFWYCFVYCFUYCFPMFD
SHAL458817 SHAL_1617SHAL_1616SHAL_1615SHAL_1610SHAL_1613
SGLO343509 SG1078SG1077SG1076SG1072SG1075
SFLE373384 SFV_1138SFV_1137SFV_1136SFV_1128SFV_1134
SFLE198214 AAN42740.1AAN42739.1AAN42738.1AAN42730.1AAN42736.1
SENT454169 SEHA_C1334SEHA_C1333SEHA_C1332SEHA_C1324SEHA_C1330
SENT321314 SCH_1169SCH_1168SCH_1167SCH_1160SCH_1166
SENT295319 SPA1631SPA1632SPA1633SPA1641SPA1634
SENT220341 STY1259STY1258STY1257STY1250STY1256
SENT209261 T1701T1702T1703T1710T1704
SDYS300267 SDY_2032SDY_2033SDY_2034SDY_2042SDY_2036
SDEN318161 SDEN_1678SDEN_1677SDEN_1676SDEN_1674
SDEG203122 SDE_1809SDE_1810SDE_1809SDE_1796
SBOY300268 SBO_1943SBO_1944SBO_1945SBO_1953SBO_1947
SBAL402882 SHEW185_2391SHEW185_2392SHEW185_2393SHEW185_2404SHEW185_2395
SBAL399599 SBAL195_2507SBAL195_2508SBAL195_2509SBAL195_2522SBAL195_2511
SALA317655 SALA_1175SALA_1176SALA_1175SALA_1653
SACI56780 SYN_00923SYN_00922SYN_00923SYN_02759
RSPH349102 RSPH17025_0402RSPH17025_0403RSPH17025_0402RSPH17025_1500
RSPH349101 RSPH17029_2433RSPH17029_2432RSPH17029_2433RSPH17029_1443
RSPH272943 RSP_0777RSP_0776RSP_0777RSP_2850
RSOL267608 RSC1117RSC1118RSC1117RSC1642
RRUB269796 RRU_A1578RRU_A2748RRU_A1578RRU_A1726
RPOM246200 SPO_1123SPO_1124SPO_1123SPO_2074
RPAL316058 RPB_2598RPB_3881RPB_2598RPB_2850
RPAL316057 RPD_2864RPD_1471RPD_2864RPD_2622
RPAL316056 RPC_2428RPC_3826RPC_2428RPC_2610
RPAL316055 RPE_2545RPE_3952RPE_2545RPE_2790
RPAL258594 RPA2927RPA1650RPA2927RPA2663
RMET266264 RMET_1040RMET_1041RMET_1040RMET_1955
RLEG216596 RL1720RL1721RL1720RL2386
RFER338969 RFER_3232RFER_3231RFER_3232RFER_1331
REUT381666 H16_A1173H16_A1174H16_A1173H16_A1455
REUT264198 REUT_A1076REUT_A1077REUT_A1076REUT_A1360
RETL347834 RHE_CH01624RHE_CH01625RHE_CH01624RHE_CH02095
PSYR223283 PSPTO_2109PSPTO_2110PSPTO_2109PSPTO_2101
PSYR205918 PSYR_1904PSYR_1905PSYR_1904PSYR_1896
PSTU379731 PST_2644PST_2642PST_2644PST_2657
PSP56811 PSYCPRWF_1740PSYCPRWF_1739PSYCPRWF_1740PSYCPRWF_1636
PSP312153 PNUC_1468PNUC_1467PNUC_1468PNUC_0929
PSP296591 BPRO_1014BPRO_1015BPRO_1014BPRO_2717
PPUT76869 PPUTGB1_1695PPUTGB1_1696PPUTGB1_1697PPUTGB1_1689
PPUT351746 PPUT_3588PPUT_3587PPUT_3588PPUT_3594
PPUT160488 PP_2154PP_2155PP_2154PP_2148
PPRO298386 PBPRA2388PBPRA2389PBPRA2390PBPRA2397PBPRA2392
PNAP365044 PNAP_3256PNAP_3255PNAP_3256PNAP_2550
PMUL272843 PM0562PM0561PM0560PM0825PM1041
PMEN399739 PMEN_1609PMEN_1608PMEN_1609PMEN_1593
PLUM243265 PLU2812PLU2813PLU2814PLU2815
PING357804 PING_2201PING_2202PING_2203PING_1986PING_2204
PHAL326442 PSHAA1390PSHAA1389PSHAA1388PSHAA1836
PFLU220664 PFL_1961PFL_1962PFL_1961PFL_1954
PFLU216595 PFLU1572PFLU1573PFLU1574PFLU1565
PFLU205922 PFL_3857PFL_3858PFL_3857PFL_3866
PENT384676 PSEEN3708PSEEN3707PSEEN3708PSEEN3715
PCRY335284 PCRYO_0787PCRYO_0788PCRYO_0787PCRYO_1664
PCAR338963 PCAR_1249PCAR_1250PCAR_1249PCAR_0091
PATL342610 PATL_2360PATL_2361PATL_1727PATL_1725
PARC259536 PSYC_0781PSYC_0782PSYC_0781PSYC_1484
PAER208964 PA2988PA2987PA2988PA3002
PAER208963 PA14_25430PA14_25440PA14_25430PA14_25230
OANT439375 OANT_2404OANT_2403OANT_2404OANT_3640
NWIN323098 NWI_1864NWI_1863NWI_1864NWI_1513
NOCE323261 NOC_2669NOC_2670NOC_2669NOC_1642
NMUL323848 NMUL_A2509NMUL_A2508NMUL_A2509NMUL_A0639
NMEN374833 NMCC_1116NMCC_1115NMCC_1116NMCC_1194
NMEN272831 NMC1135NMC1134NMC1135NMC1214
NMEN122587 NMA1403NMA1402NMA1403NMA1491
NMEN122586 NMB_1235NMB_1234NMB_1235NMB_1281
NHAM323097 NHAM_2196NHAM_2195NHAM_2196NHAM_2053
NGON242231 NGO0769NGO0770NGO0769NGO0623
NEUT335283 NEUT_2492NEUT_2491NEUT_2492NEUT_0129
NEUR228410 NE1057NE1056NE1057NE0008
NARO279238 SARO_1765SARO_1766SARO_1765SARO_1982
MXAN246197 MXAN_4730MXAN_4729MXAN_5419MXAN_1013
MSUC221988 MS1185MS1186MS1187MS0758MS0216
MSP409 M446_4409M446_4410M446_4409M446_6308
MSP400668 MMWYL1_2146MMWYL1_2147MMWYL1_2146MMWYL1_1709
MSP266779 MESO_1041MESO_1042MESO_1041MESO_1702
MPET420662 MPE_A2748MPE_A2747MPE_A2748MPE_A1569
MMAR394221 MMAR10_1376MMAR10_1377MMAR10_1376MMAR10_1485
MMAG342108 AMB2572AMB2571AMB2572AMB2465
MLOT266835 MLL1342MLL1341MLL1342MLL0827
MFLA265072 MFLA_2095MFLA_2094MFLA_2095MFLA_1748
MEXT419610 MEXT_1065MEXT_1064MEXT_1065MEXT_4163
MCAP243233 MCA_2624MCA_2625MCA_2624MCA_1864
MAQU351348 MAQU_1747MAQU_1746MAQU_1747MAQU_1933
LPNE400673 LPC_1754LPC_1753LPC_1754LPC_2333
LPNE297246 LPP2239LPP2238LPP2239LPP1016
LPNE297245 LPL2211LPL2210LPL2211LPL0983
LPNE272624 LPG2285LPG2284LPG2285LPG0954
LCHO395495 LCHO_2398LCHO_2397LCHO_2398LCHO_2006
KPNE272620 GKPORF_B0031GKPORF_B0030GKPORF_B0029GKPORF_B0018GKPORF_B0027
JSP375286 MMA_1265MMA_1266MMA_1265MMA_1408
ILOI283942 IL1516IL1517IL1518IL1520
HSOM228400 HSM_1417HSM_1418HSM_1419HSM_1578
HSOM205914 HS_0942HS_0943HS_0944HS_1161
HNEP81032 HNE_1765HNE_1766HNE_1765HNE_1985
HINF71421 HI_1548HI_1549HI_1555HI_1258
HINF374930 CGSHIEE_05320CGSHIEE_05325CGSHIEE_05355CGSHIEE_04040
HINF281310 NTHI1586NTHI1585NTHI1578NTHI1906
HHAL349124 HHAL_1252HHAL_1251HHAL_1252HHAL_1257
HDUC233412 HD_0861HD_0860HD_0858HD_0975
HCHE349521 HCH_02350HCH_02351HCH_02350HCH_02683
HARS204773 HEAR2224HEAR2223HEAR2224HEAR1914
GURA351605 GURA_3239GURA_3238GURA_3239GURA_0140
GSUL243231 GSU_2270GSU_2269GSU_2270GSU_0017
GOXY290633 GOX0078GOX0077GOX0078GOX0055
GMET269799 GMET_2359GMET_2358GMET_2359GMET_3547
GBET391165 GBCGDNIH1_1283GBCGDNIH1_1282GBCGDNIH1_1283GBCGDNIH1_0836
FTUL458234 FTA_0500FTA_0501FTA_0500FTA_0967
FTUL418136 FTW_1669FTW_1668FTW_1669FTW_1085
FTUL401614 FTN_0502FTN_0503FTN_0502FTN_1039
FTUL393115 FTF0404FTF0405FTF0404FTF0644C
FTUL393011 FTH_0472FTH_0473FTH_0472FTH_0897
FTUL351581 FTL_0474FTL_0475FTL_0474FTL_0917
FRANT LOLCLOLDLOLCMFD
FPHI484022 FPHI_0343FPHI_0342FPHI_0343FPHI_1551
ESP42895 ENT638_1633ENT638_1632ENT638_1631ENT638_1623ENT638_1629
ELIT314225 ELI_07010ELI_07005ELI_07010ELI_05115
EFER585054 EFER_1282EFER_1281EFER_1280EFER_1820EFER_1278
ECOO157 YCFWYCFVYCFUYCFPMFD
ECOL83334 ECS1496ECS1495ECS1494ECS1486ECS1492
ECOL585397 ECED1_1261ECED1_1260ECED1_1259ECED1_1251ECED1_1257
ECOL585057 ECIAI39_2042ECIAI39_2043ECIAI39_2044ECIAI39_2052ECIAI39_2046
ECOL585056 ECUMN_1296ECUMN_1295ECUMN_1294ECUMN_1286ECUMN_1292
ECOL585055 EC55989_1230EC55989_1229EC55989_1228EC55989_1220EC55989_1226
ECOL585035 ECS88_1132ECS88_1131ECS88_1130ECS88_1122ECS88_1128
ECOL585034 ECIAI1_1155ECIAI1_1154ECIAI1_1153ECIAI1_1145ECIAI1_1151
ECOL481805 ECOLC_2483ECOLC_2484ECOLC_2485ECOLC_2493ECOLC_2487
ECOL469008 ECBD_2483ECBD_2484ECBD_2485ECBD_2493ECBD_2487
ECOL439855 ECSMS35_2008ECSMS35_2009ECSMS35_2010ECSMS35_2018ECSMS35_2012
ECOL413997 ECB_01114ECB_01113ECB_01112ECB_01104ECB_01110
ECOL409438 ECSE_1183ECSE_1182ECSE_1181ECSE_1173ECSE_1179
ECOL405955 APECO1_199APECO1_198APECO1_197APECO1_189APECO1_195
ECOL364106 UTI89_C1246UTI89_C1245UTI89_C1244UTI89_C1236UTI89_C1242
ECOL362663 ECP_1109ECP_1110ECP_1109ECP_1100ECP_1106
ECOL331111 ECE24377A_1240ECE24377A_1239ECE24377A_1238ECE24377A_1230ECE24377A_1236
ECOL316407 ECK1104:JW1104:B1118ECK1103:JW5162:B1117ECK1102:JW5161:B1116ECK1094:JW5158:B1108ECK1100:JW1100:B1114
ECOL199310 C1393C1392C1391C1381C1389
ECAR218491 ECA1825ECA1824ECA1823ECA1814ECA1821
DPSY177439 DP1628DP1627DP1628DP0282
DOLE96561 DOLE_2846DOLE_2845DOLE_2846DOLE_1705
DNOD246195 DNO_1228DNO_1229DNO_1228DNO_0689
DDES207559 DDE_1366DDE_1367DDE_1366DDE_2039
DARO159087 DARO_2836DARO_2835DARO_2836DARO_1965
CVIO243365 CV_2964CV_2963CV_2964CV_1146
CVES412965 COSY_0769COSY_0770COSY_0769COSY_0922
CSP78 CAUL_2811CAUL_2810CAUL_2811CAUL_2619
CSP501479 CSE45_0843CSE45_0844CSE45_0843CSE45_1943
CSAL290398 CSAL_1582CSAL_1583CSAL_1582CSAL_1567
CRUT413404 RMAG_0844RMAG_0845RMAG_0844RMAG_1021
CPSY167879 CPS_3477CPS_3478CPS_3479CPS_2139
CJAP155077 CJA_1777CJA_1776CJA_1775CJA_1764
CBUR434922 COXBU7E912_1046COXBU7E912_1047COXBU7E912_1046COXBU7E912_1246
CBUR360115 COXBURSA331_A0938COXBURSA331_A0939COXBURSA331_A0938COXBURSA331_A1299
CBUR227377 CBU_1001CBU_1000CBU_1001CBU_1148
CAULO CC1930CC1929CC1930CC1844
BVIE269482 BCEP1808_2193BCEP1808_2192BCEP1808_2193BCEP1808_1871
BTRI382640 BT_1200BT_1199BT_1200BT_1197
BTHA271848 BTH_I1887BTH_I1888BTH_I1887BTH_I2088
BSUI470137 BSUIS_A0862BSUIS_A0863BSUIS_A0862BSUIS_B0575
BSUI204722 BR_0823BR_0824BR_0823BR_A0579
BSP376 BRADO4153BRADO5936BRADO4153BRADO3771
BSP36773 BCEP18194_A5420BCEP18194_A5419BCEP18194_A5420BCEP18194_A5255
BQUI283165 BQ05810BQ05820BQ05810BQ05840
BPSE320373 BURPS668_2584BURPS668_2583BURPS668_2584BURPS668_2359
BPSE272560 BPSL2277BPSL2276BPSL2277BPSL2100
BPET94624 BPET2764BPET2763BPET2764BPET1694
BPER257313 BP1107BP1108BP1107BP0864
BPAR257311 BPP2050BPP2051BPP2050BPP3367
BOVI236 GBOORF0848GBOORF0849GBOORF0848GBOORFA0597
BMEL359391 BAB1_0843BAB1_0844BAB1_0843BAB2_0661
BMEL224914 BMEI1139BMEI1138BMEI1139BMEII0688
BMAL320389 BMA10247_1474BMA10247_1473BMA10247_1474BMA10247_1260
BMAL320388 BMASAVP1_A2201BMASAVP1_A2200BMASAVP1_A2201BMASAVP1_A1988
BMAL243160 BMA_1696BMA_1695BMA_1696BMA_1491
BJAP224911 BLL4876BLL4875BLL4876BLL4601
BHEN283166 BH08780BH08770BH08780BH08750
BCEN331272 BCEN2424_2114BCEN2424_2113BCEN2424_2114BCEN2424_1944
BCEN331271 BCEN_5963BCEN_5964BCEN_5963BCEN_6135
BCAN483179 BCAN_A0838BCAN_A0839BCAN_A0838BCAN_B0579
BBRO257310 BB2298BB2299BB2298BB3818
BBAC360095 BARBAKC583_0795BARBAKC583_0796BARBAKC583_0795BARBAKC583_0798
BAMB398577 BAMMC406_2024BAMMC406_2023BAMMC406_2024BAMMC406_1859
BAMB339670 BAMB_2151BAMB_2150BAMB_2151BAMB_1932
BABO262698 BRUAB1_0837BRUAB1_0838BRUAB1_0837BRUAB2_0645
ASP76114 EBA5819EBA5820EBA5819EBA6555
ASP62977 ACIAD2641ACIAD2640ACIAD2641ACIAD1395
ASP62928 AZO1509AZO1510AZO1509AZO1673
ASP232721 AJS_3421AJS_3420AJS_3421AJS_3157
ASAL382245 ASA_1885ASA_1884ASA_1883ASA_2585ASA_1881
APLE434271 APJL_2087APJL_2088APJL_2089APJL_1357
APLE416269 APL_2036APL_2037APL_2038APL_1339
AHYD196024 AHA_2007AHA_2006AHA_2005AHA_2585AHA_2003
AFER243159 AFE_2556AFE_2555AFE_2556AFE_2663
AEHR187272 MLG_1440MLG_1439MLG_1440MLG_1800
ADEH290397 ADEH_1079ADEH_3410ADEH_1079ADEH_4332
ACAU438753 AZC_1687AZC_1688AZC_1687AZC_1221
ABOR393595 ABO_1049ABO_1050ABO_1049ABO_1028
ABAU360910 BAV1522BAV1523BAV1522BAV1061
ABAC204669 ACID345_3567ACID345_3572ACID345_3567ACID345_4549
AAVE397945 AAVE_3700AAVE_3699AAVE_3700AAVE_1580


Organism features enriched in list (features available for 229 out of the 245 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 7.213e-61892
Disease:Brucellosis 0.009103655
Disease:Bubonic_plague 0.003528066
Disease:Dysentery 0.003528066
Disease:Gastroenteritis 0.00520391013
Disease:Tularemia 0.009103655
Endospores:No 1.008e-1342211
Endospores:Yes 4.900e-10253
GC_Content_Range4:0-40 2.343e-2725213
GC_Content_Range4:40-60 1.319e-8120224
GC_Content_Range4:60-100 7.901e-884145
GC_Content_Range7:30-40 2.512e-1525166
GC_Content_Range7:50-60 3.224e-1274107
GC_Content_Range7:60-70 8.673e-1083134
Genome_Size_Range5:0-2 3.496e-1917155
Genome_Size_Range5:2-4 0.001557162197
Genome_Size_Range5:4-6 6.548e-19121184
Genome_Size_Range5:6-10 0.00066572947
Genome_Size_Range9:0-1 0.0000177127
Genome_Size_Range9:1-2 8.836e-1416128
Genome_Size_Range9:2-3 0.000106530120
Genome_Size_Range9:4-5 2.900e-76096
Genome_Size_Range9:5-6 4.570e-106188
Genome_Size_Range9:6-8 0.00012412638
Gram_Stain:Gram_Neg 1.733e-49212333
Habitat:Multiple 0.001607485178
Habitat:Specialized 0.0000487853
Motility:No 1.589e-1323151
Motility:Yes 3.918e-10141267
Optimal_temp.:- 0.0082343113257
Optimal_temp.:25-30 3.873e-71819
Optimal_temp.:35-37 4.286e-61313
Optimal_temp.:37 0.005546631106
Oxygen_Req:Aerobic 0.001517188185
Oxygen_Req:Anaerobic 1.200e-1013102
Oxygen_Req:Facultative 3.627e-6104201
Pathogenic_in:Animal 0.00588563566
Pathogenic_in:Plant 0.00588651115
Shape:Coccobacillus 0.00002961111
Shape:Coccus 1.493e-71282
Shape:Rod 2.534e-17184347
Shape:Sphere 0.0049587219
Shape:Spiral 0.0002562434
Temp._range:Mesophilic 0.0006717200473
Temp._range:Psychrophilic 0.000202099
Temp._range:Thermophilic 3.257e-7135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 268
Effective number of orgs (counting one per cluster within 468 clusters): 213

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
EFAE226185 ncbi Enterococcus faecalis V5831
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27051
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K161
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110171
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G6575   G6574   G6573   G6568   EG11619   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1007
TTHE262724 TT_C0648
TSP28240 TRQ2_0583
TSP1755 TETH514_0593
TPSE340099 TETH39_0169
TPET390874 TPET_0568
TPEN368408
TPAL243276
TMAR243274 TM_0352
TLET416591 TLET_1320
TKOD69014
TFUS269800 TFU_0424
TERY203124
TELO197221
TDEN243275 TDE_2041
TACI273075
STRO369723 STROP_0884
STOK273063
STHE322159 STER_0007
STHE299768 STR0006
STHE264199 STU0006
SSUI391296
SSUI391295 SSU05_0008
SSP84588
SSP64471
SSP321332 CYB_1207
SSP321327 CYA_1763
SSP1148 SLL0377
SSP1131
SSOL273057
SSAP342451 SSP2253
SPYO370554 MGAS10750_SPY0006
SPYO370553 MGAS2096_SPY0006
SPYO370552 MGAS10270_SPY0006
SPYO370551 MGAS9429_SPY0006
SPYO319701 M28_SPY0006
SPYO293653 M5005_SPY0006
SPYO286636 M6_SPY0006
SPYO198466 SPYM3_0006
SPYO193567 SPS0006
SPYO186103 SPYM18_0007
SPYO160490 SPY0008
SMUT210007 SMU_08
SMAR399550
SHAE279808 SH2508
SGOR29390 SGO_2140
SERY405948 SACE_0826
SEPI176280 SE_2280
SEPI176279 SERP0141
SELO269084 SYC0227_C
SCO SCO3109
SAVE227882 SAV3549
SAUR93062 SACOL0547
SAUR93061 SAOUHSC_00477
SAUR426430 NWMN_0466
SAUR418127 SAHV_0500
SAUR367830 SAUSA300_0481
SAUR359787 SAURJH1_0538
SAUR359786 SAURJH9_0525
SAUR282459 SAS0460
SAUR282458 SAR0504
SAUR273036 SAB0452
SAUR196620 MW0458
SAUR158879 SA0461
SAUR158878 SAV0503
SACI330779
RSP101510 RHA1_RO05760
RSAL288705 RSAL33209_2974
RBEL391896
RALB246199 GRAORF_0547
PTOR263820
PTHE370438
PRUM264731 GFRORF0052
PPEN278197 PEPE_1552
PMOB403833 PMOB_1073
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_1701
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747 PPA0541
PABY272844
OTSU357244
OIHE221109 OB0063
NSP35761 NOCA_0924
NSP103690 ALR1507
NPHA348780
MTUB419947
MTUB336982
MTHE264732 MOTH_0081
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918 MKMS_4331
MSP164757 MJLS_4624
MSP164756 MMCS_4245
MSME246196 MSMEG_5423
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192 MK1654
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2196
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_0081
MBOV410289
MBOV233413
MAVI243243
MART243272
MAER449447
MAEO419665
MABS561007 MAB_1157
LXYL281090
LWEL386043 LWE0176
LSPH444177 BSPH_0075
LSAK314315 LSA1604
LREU557436 LREU_0262
LPLA220668 LP_0539
LMON265669 LMOF2365_0225
LMON169963 LMO0214
LMES203120 LEUM_0399
LLAC272623 L0263
LLAC272622 LACR_0011
LJOH257314 LJ_0277
LINT267671 LIC_10518
LINT189518 LA3712
LINN272626 LIN0246
LHEL405566 LHV_0291
LGAS324831 LGAS_0271
LDEL390333 LDB0363
LDEL321956 LBUL_0318
LCAS321967 LSEI_2547
LBRE387344 LVIS_0516
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA0273
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMOD498761 HM1_0721
HMAR272569
HHEP235279 HH_0318
HBUT415426
GTHE420246 GTNG_0048
GKAU235909 GK0048
GFOR411154 GFO_1949
FSP1855 FRANEAN1_0803
FSP106370 FRANCCI3_3926
FNOD381764 FNOD_0669
FMAG334413 FMG_0481
FJOH376686
FALN326424 FRAAL6237
EFAE226185 EF_0257
DSP255470 CBDBA1211
DSP216389 DEHABAV1_1092
DHAF138119 DSY0189
DGEO319795 DGEO_0813
DETH243164
CTRA471473
CTRA471472
CTET212717 CTC_01821
CTEP194439 CT_1474
CSUL444179
CPRO264201 PC1521
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2493
CPER195103 CPF_2807
CPER195102 CPE2484
CNOV386415 NT01CX_1020
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_0884
CJEJ360109 JJD26997_1164
CJEJ354242 CJJ81176_0965
CJEJ195099 CJE_1019
CJEJ192222 CJ0941C
CJEI306537
CHUT269798 CHU_2233
CGLU196627 CG1099
CFEL264202
CEFF196164 CE1034
CDIP257309
CDIF272563 CD0459
CDES477974 DAUD_0072
CCHL340177 CAG_0979
CCAV227941
CBOT508765 CLL_A0152
CBEI290402 CBEI_0086
CABO218497
BXEN266265
BTUR314724
BTHU412694 BALH_0048
BTHU281309 BT9727_0048
BPUM315750 BPUM_0039
BLON206672 BL1025
BLIC279010 BL00515
BHER314723
BGAR290434
BFRA295405 BF4478
BFRA272559 BF4273
BCLA66692 ABC0083
BCER572264 BCA_0063
BCER405917 BCE_0051
BCER288681 BCE33L0048
BCER226900 BC_0058
BBUR224326
BAPH372461
BAMY326423 RBAM_000640
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
APER272557
ANAE240017 ANA_1846
AMAR329726 AM1_4147
ALAI441768
AFUL224325 AF_1018
ACEL351607 ACEL_1913
AAUR290340 AAUR_1356


Organism features enriched in list (features available for 253 out of the 268 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00375785192
Arrangment:Clusters 0.00001191617
Disease:Pharyngitis 0.001180488
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00009071111
Disease:Wide_range_of_infections 0.00009071111
Disease:bronchitis_and_pneumonitis 0.001180488
Disease:gastroenteritis 0.0057040113
Endospores:No 4.070e-16138211
Endospores:Yes 0.00396283253
GC_Content_Range4:0-40 1.286e-11131213
GC_Content_Range4:40-60 0.000855980224
GC_Content_Range4:60-100 0.000018242145
GC_Content_Range7:0-30 0.00393552947
GC_Content_Range7:30-40 1.664e-8102166
GC_Content_Range7:50-60 9.537e-627107
GC_Content_Range7:60-70 1.457e-635134
Genome_Size_Range5:0-2 2.541e-12104155
Genome_Size_Range5:2-4 0.0006039103197
Genome_Size_Range5:4-6 2.904e-1833184
Genome_Size_Range5:6-10 0.00909141347
Genome_Size_Range9:0-1 0.00017782127
Genome_Size_Range9:1-2 1.901e-883128
Genome_Size_Range9:2-3 0.000042371120
Genome_Size_Range9:4-5 2.594e-101596
Genome_Size_Range9:5-6 7.340e-71888
Genome_Size_Range9:6-8 0.0005870738
Gram_Stain:Gram_Neg 9.806e-4266333
Gram_Stain:Gram_Pos 1.138e-23117150
Habitat:Multiple 0.002533263178
Habitat:Specialized 0.00009933653
Motility:No 3.844e-1098151
Motility:Yes 5.023e-787267
Optimal_temp.:- 0.000299292257
Optimal_temp.:30-37 5.263e-61718
Oxygen_Req:Aerobic 0.001633665185
Oxygen_Req:Anaerobic 0.000107861102
Pathogenic_in:Animal 0.00769392066
Salinity:Non-halophilic 0.000226462106
Shape:Coccus 6.142e-75682
Shape:Irregular_coccus 0.00013131517
Shape:Rod 2.326e-13108347
Shape:Sphere 0.00002911719
Temp._range:Hyperthermophilic 0.00001282023
Temp._range:Mesophilic 0.0015996192473
Temp._range:Thermophilic 0.00002492735



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462130.7815
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002350.7696
PWY-1269 (CMP-KDO biosynthesis I)3252380.7249
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951770.7109
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912220.7084
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181880.7046
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962230.7014
PWY-5918 (heme biosynthesis I)2722120.6959
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902180.6848
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862160.6827
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482400.6826
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251860.6671
PWY-4041 (γ-glutamyl cycle)2792100.6627
PWY-5913 (TCA cycle variation IV)3012180.6551
TYRFUMCAT-PWY (tyrosine degradation I)1841630.6529
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392320.6511
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491410.6348
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831580.6207
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911610.6121
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911580.5907
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551870.5795
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292160.5702
PWY-5028 (histidine degradation II)1301190.5489
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982360.5438
AST-PWY (arginine degradation II (AST pathway))1201120.5400
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761430.5385
PWY-5148 (acyl-CoA hydrolysis)2271680.5376
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222390.5134
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561290.5131
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162370.5121
REDCITCYC (TCA cycle variation II)1741380.5096
PWY-5386 (methylglyoxal degradation I)3051970.5065
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491730.5037
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491730.5037
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96930.5028
DAPLYSINESYN-PWY (lysine biosynthesis I)3422100.4986
P344-PWY (acrylonitrile degradation)2101530.4895
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)1121010.4874
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262020.4855
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742190.4825
KDOSYN-PWY (KDO transfer to lipid IVA I)1801370.4800
GLUCONSUPER-PWY (D-gluconate degradation)2291600.4767
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791360.4764
PWY0-501 (lipoate biosynthesis and incorporation I)3852210.4707
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001890.4671
P601-PWY (D-camphor degradation)95880.4629
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351110.4619
PWY-3162 (tryptophan degradation V (side chain pathway))94870.4593
PWY-46 (putrescine biosynthesis III)1381120.4568
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381120.4568
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94860.4502
PWY-5188 (tetrapyrrole biosynthesis I)4392350.4492
PWY-5340 (sulfate activation for sulfonation)3852170.4436
LIPASYN-PWY (phospholipases)2121470.4413
PWY-6087 (4-chlorocatechol degradation)2231510.4339
GLUT-REDOX-PWY (glutathione redox reactions II)2461610.4320
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81760.4313
PWY0-862 (cis-dodecenoyl biosynthesis)3432000.4301
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652080.4300
GALACTITOLCAT-PWY (galactitol degradation)73700.4219
PROSYN-PWY (proline biosynthesis I)4752410.4185
PWY-5938 ((R)-acetoin biosynthesis I)3762100.4174
VALDEG-PWY (valine degradation I)2901770.4147
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111850.4120
PWY-6193 (3-chlorocatechol degradation II (ortho))1941340.4095
GALACTCAT-PWY (D-galactonate degradation)104870.4062
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891750.4042



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6574   G6573   G6568   EG11619   
G65750.9999650.9999890.9985310.999245
G65740.9999630.9985970.999232
G65730.9986120.999351
G65680.998744
EG11619



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PAIRWISE BLAST SCORES:

  G6575   G6574   G6573   G6568   EG11619   
G65750.0f0-2.5e-31--
G6574-0.0f0---
G65731.1e-30-0.0f0--
G6568---0.0f0-
EG11619----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-62-CPLX (LolCDE ABC lipoprotein transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.600, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9986 G6573 (lolC) YCFU-MONOMER (LolC)
   *in cand* 0.9996 0.9986 G6574 (lolD) YCFV-MONOMER (LolD)
   *in cand* 0.9995 0.9985 G6575 (lolE) YCFW-MONOMER (LolE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9987 EG11619 (mfd) EG11619-MONOMER (transcription-repair coupling factor)
   *in cand* 0.9989 0.9985 G6568 (ycfP) G6568-MONOMER (conserved protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11619 G6573 G6574 G6575 (centered at G6574)
G6568 (centered at G6568)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6575   G6574   G6573   G6568   EG11619   
312/623334/623313/62370/623413/623
AAEO224324:0:Tyes0-0--
AAUR290340:2:Tyes----0
AAVE397945:0:Tyes207920782079-0
ABAC204669:0:Tyes050-997
ABAU360910:0:Tyes467468467-0
ABOR393595:0:Tyes212221-0
ABUT367737:0:Tyes426-4260-
ACAU438753:0:Tyes473474473-0
ACEL351607:0:Tyes----0
ACRY349163:8:Tyes0-0-812
ADEH290397:0:Tyes023570-3284
AEHR187272:0:Tyes101-356
AFER243159:0:Tyes101-107
AFUL224325:0:Tyes-0---
AHYD196024:0:Tyes4325620
AMAR234826:0:Tyes0-0--
AMAR329726:9:Tyes----0
AMET293826:0:Tyes-2854--0
ANAE240017:0:Tyes----0
AORE350688:0:Tyes-0--2564
APHA212042:0:Tyes0-0--
APLE416269:0:Tyes728729730-0
APLE434271:0:Tno762763764-0
ASAL382245:5:Tyes4326740
ASP1667:3:Tyes-0--147
ASP232721:2:Tyes257256257-0
ASP62928:0:Tyes010-170
ASP62977:0:Tyes114911481149-0
ASP76114:2:Tyes010-448
BABO262698:0:Tno----0
BABO262698:1:Tno010--
BAMB339670:3:Tno227226227-0
BAMB398577:3:Tno172171172-0
BAMY326423:0:Tyes----0
BANT260799:0:Tno-5117--0
BANT261594:2:Tno-5028--0
BANT568206:2:Tyes-5289--0
BANT592021:2:Tno-5279--0
BAPH198804:0:Tyes210--
BBAC264462:0:Tyes0-268-2236
BBAC360095:0:Tyes010-3
BBRO257310:0:Tyes010-1525
BCAN483179:0:Tno----0
BCAN483179:1:Tno010--
BCEN331271:0:Tno010-179
BCEN331272:3:Tyes170169170-0
BCER226900:1:Tyes----0
BCER288681:0:Tno----0
BCER315749:1:Tyes-3553--0
BCER405917:1:Tyes----0
BCER572264:1:Tno----0
BCIC186490:0:Tyes012--
BCLA66692:0:Tyes----0
BFRA272559:1:Tyes0----
BFRA295405:0:Tno0----
BHAL272558:0:Tyes-3694--0
BHEN283166:0:Tyes323-0
BJAP224911:0:Fyes276275276-0
BLIC279010:0:Tyes----0
BLON206672:0:Tyes----0
BMAL243160:1:Tno177176177-0
BMAL320388:1:Tno205204205-0
BMAL320389:1:Tyes208207208-0
BMEL224914:0:Tno----0
BMEL224914:1:Tno101--
BMEL359391:0:Tno----0
BMEL359391:1:Tno010--
BOVI236:0:Tyes----0
BOVI236:1:Tyes010--
BPAR257311:0:Tno010-1242
BPER257313:0:Tyes219220219-0
BPET94624:0:Tyes107410731074-0
BPSE272560:1:Tyes180179180-0
BPSE320372:1:Tno101--
BPSE320373:1:Tno214213214-0
BPUM315750:0:Tyes----0
BQUI283165:0:Tyes010-3
BSP107806:2:Tyes-21-0
BSP36773:2:Tyes173172173-0
BSP376:0:Tyes3672066367-0
BSUB:0:Tyes-3493--0
BSUI204722:0:Tyes----0
BSUI204722:1:Tyes010--
BSUI470137:0:Tno----0
BSUI470137:1:Tno010--
BTHA271848:1:Tno010-195
BTHE226186:0:Tyes0805---
BTHU281309:1:Tno----0
BTHU412694:1:Tno----0
BTRI382640:1:Tyes323-0
BVIE269482:7:Tyes321320321-0
BWEI315730:4:Tyes-5013--0
CACE272562:1:Tyes-0--2995
CAULO:0:Tyes868586-0
CBEI290402:0:Tyes----0
CBLO203907:0:Tyes012--
CBLO291272:0:Tno012--
CBOT36826:1:Tno-0--2291
CBOT441770:0:Tyes-0--2275
CBOT441771:0:Tno-0--2138
CBOT441772:1:Tno-0--2323
CBOT498213:1:Tno-0--2330
CBOT508765:1:Tyes----0
CBOT515621:2:Tyes-0--2936
CBOT536232:0:Tno-0--2528
CBUR227377:1:Tyes101-139
CBUR360115:1:Tno010-333
CBUR434922:2:Tno010-191
CCHL340177:0:Tyes-0---
CCON360104:2:Tyes0-0--
CCUR360105:0:Tyes0-0--
CDES477974:0:Tyes----0
CDIF272563:1:Tyes-0---
CEFF196164:0:Fyes----0
CFET360106:0:Tyes0-0--
CGLU196627:0:Tyes----0
CHOM360107:1:Tyes0-0--
CHUT269798:0:Tyes-0---
CHYD246194:0:Tyes-1981--0
CJAP155077:0:Tyes131211-0
CJEJ192222:0:Tyes--0--
CJEJ195099:0:Tno--0--
CJEJ354242:2:Tyes--0--
CJEJ360109:0:Tyes--0--
CJEJ407148:0:Tno--0--
CKLU431943:1:Tyes-1481--0
CNOV386415:0:Tyes----0
CPEL335992:0:Tyes0-0--
CPER195102:1:Tyes----0
CPER195103:0:Tno----0
CPER289380:3:Tyes----0
CPRO264201:0:Fyes----0
CPSY167879:0:Tyes128712881289-0
CRUT413404:0:Tyes010-173
CSAL290398:0:Tyes151615-0
CSP501479:8:Fyes010-1084
CSP78:2:Tyes193192193-0
CTEP194439:0:Tyes-0---
CTET212717:0:Tyes-0---
CVES412965:0:Tyes010-145
CVIO243365:0:Tyes185018491850-0
DARO159087:0:Tyes869868869-0
DDES207559:0:Tyes010-683
DGEO319795:1:Tyes0----
DHAF138119:0:Tyes----0
DNOD246195:0:Tyes513514513-0
DOLE96561:0:Tyes116011591160-0
DPSY177439:2:Tyes139113901391-0
DRAD243230:3:Tyes0-0--
DRED349161:0:Tyes-218--0
DSHI398580:5:Tyes0-0-823
DSP216389:0:Tyes----0
DSP255470:0:Tno----0
DVUL882:1:Tyes101--
ECAN269484:0:Tyes0-0--
ECAR218491:0:Tyes109807
ECHA205920:0:Tyes0-0--
ECOL199310:0:Tno1110907
ECOL316407:0:Tno109806
ECOL331111:6:Tno109806
ECOL362663:0:Tno910906
ECOL364106:1:Tno109806
ECOL405955:2:Tyes109806
ECOL409438:6:Tyes109806
ECOL413997:0:Tno109806
ECOL439855:4:Tno012104
ECOL469008:0:Tno012104
ECOL481805:0:Tno012104
ECOL585034:0:Tno109806
ECOL585035:0:Tno109806
ECOL585055:0:Tno109806
ECOL585056:2:Tno109806
ECOL585057:0:Tno012104
ECOL585397:0:Tno109806
ECOL83334:0:Tno109806
ECOLI:0:Tno109806
ECOO157:0:Tno109806
EFAE226185:3:Tyes----0
EFER585054:1:Tyes4325330
ELIT314225:0:Tyes386385386-0
ERUM254945:0:Tyes0-0--
ERUM302409:0:Tno0-0--
ESP42895:1:Tyes109806
FALN326424:0:Tyes----0
FMAG334413:1:Tyes----0
FNOD381764:0:Tyes-0---
FNUC190304:0:Tyes02460--
FPHI484022:1:Tyes101-1261
FRANT:0:Tno010-214
FSP106370:0:Tyes----0
FSP1855:0:Tyes----0
FSUC59374:0:Tyes010--
FTUL351581:0:Tno010-381
FTUL393011:0:Tno010-350
FTUL393115:0:Tyes010-213
FTUL401614:0:Tyes010-533
FTUL418136:0:Tno466465466-0
FTUL458234:0:Tno010-375
GBET391165:0:Tyes447446447-0
GFOR411154:0:Tyes-0---
GKAU235909:1:Tyes----0
GMET269799:1:Tyes101-1182
GOXY290633:5:Tyes232223-0
GSUL243231:0:Tyes224122402241-0
GTHE420246:1:Tyes----0
GURA351605:0:Tyes308430833084-0
GVIO251221:0:Tyes-0--2799
HACI382638:1:Tyes0-0--
HARS204773:0:Tyes288287288-0
HAUR316274:2:Tyes-0--1056
HCHE349521:0:Tyes010-302
HDUC233412:0:Tyes210-112
HHAL349124:0:Tyes101-6
HHEP235279:0:Tyes0----
HINF281310:0:Tyes760-284
HINF374930:0:Tyes219220226-0
HINF71421:0:Tno286287293-0
HMOD498761:0:Tyes----0
HNEP81032:0:Tyes010-216
HPY:0:Tno0-0--
HPYL357544:1:Tyes0-0--
HPYL85963:0:Tno0-0--
HSOM205914:1:Tyes012-220
HSOM228400:0:Tno012-166
ILOI283942:0:Tyes012-4
JSP290400:1:Tyes1011-1011-0
JSP375286:0:Tyes010-148
KPNE272620:2:Tyes131211010
KRAD266940:2:Fyes-0--809
LACI272621:0:Tyes----0
LBRE387344:2:Tyes----0
LCAS321967:1:Tyes----0
LCHO395495:0:Tyes393392393-0
LDEL321956:0:Tyes----0
LDEL390333:0:Tyes----0
LGAS324831:0:Tyes----0
LHEL405566:0:Tyes----0
LINN272626:1:Tno----0
LINT189518:1:Tyes-0---
LINT267671:1:Tno-0---
LINT363253:3:Tyes101--
LJOH257314:0:Tyes----0
LLAC272622:5:Tyes----0
LLAC272623:0:Tyes----0
LMES203120:1:Tyes----0
LMON169963:0:Tno----0
LMON265669:0:Tyes----0
LPLA220668:0:Tyes----0
LPNE272624:0:Tno132913281329-0
LPNE297245:1:Fno122512241225-0
LPNE297246:1:Fyes122812271228-0
LPNE400673:0:Tno101-571
LREU557436:0:Tyes----0
LSAK314315:0:Tyes----0
LSPH444177:1:Tyes----0
LWEL386043:0:Tyes----0
MABS561007:1:Tyes----0
MACE188937:0:Tyes7990799--
MAQU351348:2:Tyes101-184
MBAR269797:1:Tyes020--
MBUR259564:0:Tyes-0---
MCAP243233:0:Tyes727728727-0
MEXT419610:0:Tyes101-3093
MFLA265072:0:Tyes346345346-0
MHUN323259:0:Tyes-0---
MKAN190192:0:Tyes-0---
MLOT266835:2:Tyes410409410-0
MMAG342108:0:Tyes107106107-0
MMAR394221:0:Tyes010-109
MMAZ192952:0:Tyes028050--
MPET420662:1:Tyes117311721173-0
MSME246196:0:Tyes----0
MSP164756:1:Tno----0
MSP164757:0:Tno----0
MSP189918:2:Tyes----0
MSP266779:3:Tyes010-673
MSP400668:0:Tyes441442441-0
MSP409:2:Tyes010-1854
MSUC221988:0:Tyes1004100510065660
MTHE264732:0:Tyes----0
MTHE349307:0:Tyes0525---
MVAN350058:0:Tyes-0--3743
MXAN246197:0:Tyes358435834251-0
NARO279238:0:Tyes010-227
NEUR228410:0:Tyes107010691070-0
NEUT335283:2:Tyes232523242325-0
NFAR247156:2:Tyes-0--633
NGON242231:0:Tyes133134133-0
NHAM323097:2:Tyes143142143-0
NMEN122586:0:Tno101-43
NMEN122587:0:Tyes101-78
NMEN272831:0:Tno101-65
NMEN374833:0:Tno101-79
NMUL323848:3:Tyes185218511852-0
NOCE323261:1:Tyes103310341033-0
NSEN222891:0:Tyes0-0--
NSP103690:6:Tyes-0---
NSP35761:1:Tyes----0
NSP387092:0:Tyes--0406-
NWIN323098:0:Tyes359358359-0
OANT439375:4:Tyes----0
OANT439375:5:Tyes101--
OCAR504832:0:Tyes0-0-261
OIHE221109:0:Tyes----0
PACN267747:0:Tyes----0
PAER208963:0:Tyes151615-0
PAER208964:0:Tno101-15
PARC259536:0:Tyes010-707
PATL342610:0:Tyes6356362-0
PCAR338963:0:Tyes116611671166-0
PCRY335284:1:Tyes010-871
PDIS435591:0:Tyes4220---
PENT384676:0:Tyes101-7
PFLU205922:0:Tyes010-9
PFLU216595:1:Tyes678-0
PFLU220664:0:Tyes787-0
PGIN242619:0:Tyes-6640--
PHAL326442:1:Tyes210-450
PING357804:0:Tyes1881891900191
PINT246198:1:Tyes01772---
PLUM243265:0:Fyes012-3
PLUT319225:0:Tyes-0---
PMEN399739:0:Tyes161516-0
PMOB403833:0:Tyes-0---
PMUL272843:1:Tyes210265481
PNAP365044:8:Tyes711710711-0
PPEN278197:0:Tyes----0
PPRO298386:2:Tyes01294
PPUT160488:0:Tno676-0
PPUT351746:0:Tyes101-7
PPUT76869:0:Tno678-0
PRUM264731:0:Tyes-0---
PSP117:0:Tyes307003070--
PSP296591:2:Tyes010-1693
PSP312153:0:Tyes552551552-0
PSP56811:2:Tyes106105106-0
PSTU379731:0:Tyes101-15
PSYR205918:0:Tyes898-0
PSYR223283:2:Tyes787-0
RAKA293614:0:Fyes0-0--
RALB246199:0:Tyes-0---
RBEL336407:0:Tyes0-0--
RCAN293613:0:Fyes0-0--
RCAS383372:0:Tyes-0--1184
RCON272944:0:Tno0-0--
RDEN375451:4:Tyes0-0-641
RETL347834:5:Tyes010-469
REUT264198:3:Tyes010-282
REUT381666:2:Tyes010-276
RFEL315456:2:Tyes0-0--
RFER338969:1:Tyes190119001901-0
RLEG216596:6:Tyes010-666
RMAS416276:1:Tyes0-0--
RMET266264:2:Tyes010-908
RPAL258594:0:Tyes128201282-1018
RPAL316055:0:Tyes013950-244
RPAL316056:0:Tyes014060-185
RPAL316057:0:Tyes140301403-1161
RPAL316058:0:Tyes012850-252
RPOM246200:1:Tyes010-930
RPRO272947:0:Tyes0-0--
RRIC392021:0:Fno0-0--
RRIC452659:0:Tyes0-0--
RRUB269796:1:Tyes011670-148
RSAL288705:0:Tyes----0
RSOL267608:1:Tyes010-546
RSP101510:3:Fyes----0
RSP357808:0:Tyes-0--3356
RSPH272943:4:Tyes101410131014-0
RSPH349101:2:Tno10009991000-0
RSPH349102:5:Tyes010-1086
RTYP257363:0:Tno0-0--
RXYL266117:0:Tyes-0--62
SACI56780:0:Tyes138313821383-0
SAGA205921:0:Tno-1269--0
SAGA208435:0:Tno-1325--0
SAGA211110:0:Tyes-1485--0
SALA317655:1:Tyes010-491
SARE391037:0:Tyes-0--411
SAUR158878:1:Tno----0
SAUR158879:1:Tno----0
SAUR196620:0:Tno----0
SAUR273036:0:Tno----0
SAUR282458:0:Tno----0
SAUR282459:0:Tno----0
SAUR359786:1:Tno----0
SAUR359787:1:Tno----0
SAUR367830:3:Tno----0
SAUR418127:0:Tyes----0
SAUR426430:0:Tno----0
SAUR93061:0:Fno----0
SAUR93062:1:Tno----0
SAVE227882:1:Fyes----0
SBAL399599:3:Tyes012154
SBAL402882:1:Tno012124
SBOY300268:1:Tyes012104
SCO:2:Fyes----0
SDEG203122:0:Tyes131413-0
SDEN318161:0:Tyes432-0
SDYS300267:1:Tyes012104
SELO269084:0:Tyes----0
SENT209261:0:Tno01293
SENT220341:0:Tno98706
SENT295319:0:Tno012103
SENT321314:2:Tno98706
SENT454169:2:Tno109806
SEPI176279:1:Tyes----0
SEPI176280:0:Tno----0
SERY405948:0:Tyes----0
SFLE198214:0:Tyes109806
SFLE373384:0:Tno109806
SFUM335543:0:Tyes263-263-0
SGLO343509:3:Tyes65403
SGOR29390:0:Tyes----0
SHAE279808:0:Tyes----0
SHAL458817:0:Tyes76503
SHIGELLA:0:Tno109806
SLAC55218:1:Fyes101-2598
SLOI323850:0:Tyes76503
SMED366394:3:Tyes010-471
SMEL266834:2:Tyes010-375
SMUT210007:0:Tyes----0
SONE211586:1:Tyes87604
SPEA398579:0:Tno76503
SPNE1313:0:Tyes-682--0
SPNE170187:0:Tyes-0--1260
SPNE171101:0:Tno-696--0
SPNE487213:0:Tno-1288--0
SPNE487214:0:Tno-837--0
SPNE488221:0:Tno-779--0
SPRO399741:1:Tyes807978075
SPYO160490:0:Tno----0
SPYO186103:0:Tno----0
SPYO193567:0:Tno----0
SPYO198466:0:Tno----0
SPYO286636:0:Tno----0
SPYO293653:0:Tno----0
SPYO319701:0:Tyes----0
SPYO370551:0:Tno----0
SPYO370552:0:Tno----0
SPYO370553:0:Tno----0
SPYO370554:0:Tyes----0
SRUB309807:1:Tyes011551466--
SSAP342451:2:Tyes----0
SSED425104:0:Tyes01274
SSON300269:1:Tyes109806
SSP1148:0:Tyes----0
SSP292414:2:Tyes504-504-0
SSP321327:0:Tyes----0
SSP321332:0:Tyes----0
SSP387093:0:Tyes0-0--
SSP644076:7:Fyes0-0-379
SSP94122:1:Tyes01274
SSUI391295:0:Tyes----0
STHE264199:0:Tyes----0
STHE292459:0:Tyes-0--2706
STHE299768:0:Tno----0
STHE322159:2:Tyes----0
STRO369723:0:Tyes----0
STYP99287:1:Tyes98706
SWOL335541:0:Tyes-2316--0
TCRU317025:0:Tyes454-0
TDEN243275:0:Tyes--0--
TDEN292415:0:Tyes110109110-0
TDEN326298:0:Tyes0-0--
TFUS269800:0:Tyes----0
TLET416591:0:Tyes-0---
TMAR243274:0:Tyes-0---
TPET390874:0:Tno-0---
TPSE340099:0:Tyes----0
TROS309801:1:Tyes-0--384
TSP1755:0:Tyes----0
TSP28240:0:Tyes-0---
TTEN273068:0:Tyes-139--0
TTHE262724:1:Tyes-0---
TTHE300852:2:Tyes-0---
TTUR377629:0:Tyes010-163
VCHO:0:Tyes012104
VCHO345073:1:Tno012104
VEIS391735:1:Tyes101-1162
VFIS312309:1:Tyes543-0
VFIS312309:2:Tyes---0-
VPAR223926:1:Tyes109806
VVUL196600:2:Tyes01284
VVUL216895:1:Tno98705
WPIP80849:0:Tyes0-0--
WPIP955:0:Tyes0-0--
WSUC273121:0:Tyes0-0182-
XAUT78245:1:Tyes203202203-0
XAXO190486:0:Tyes010-777
XCAM190485:0:Tyes101-573
XCAM314565:0:Tno580581580-0
XCAM316273:0:Tno101-653
XCAM487884:0:Tno601602601-0
XFAS160492:2:Tno105710581057-0
XFAS183190:1:Tyes317318317-0
XFAS405440:0:Tno331332331-0
XORY291331:0:Tno841840841-0
XORY342109:0:Tyes817816817-0
XORY360094:0:Tno180118031801-0
YENT393305:1:Tyes65403
YPES187410:5:Tno1110908
YPES214092:3:Tno12111009
YPES349746:2:Tno414243044
YPES360102:3:Tyes01293
YPES377628:2:Tno01293
YPES386656:2:Tno012103
YPSE273123:2:Tno01283
YPSE349747:2:Tno98705
ZMOB264203:0:Tyes0-0-1222



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