CANDIDATE ID: 555

CANDIDATE ID: 555

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9955380e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7705 (gspF) (b3327)
   Products of gene:
     - G7705-MONOMER (putative protein secretion protein for export)
     - CPLX0-3382 (GspC-O secreton  complex)

- G7539 (pppA) (b2972)
   Products of gene:
     - G7539-MONOMER (prepilin peptidase)

- EG12106 (hofB) (b0107)
   Products of gene:
     - EG12106-MONOMER (protein involved in plasmid replication)

- EG11798 (hofC) (b0106)
   Products of gene:
     - EG11798-MONOMER (protein transport protein HofC)

- EG11359 (gspO) (b3335)
   Products of gene:
     - EG11359-MONOMER (leader peptidase, integral membrane protein)
       Reactions:
        EC# 3.4.23.43
     - CPLX0-3382 (GspC-O secreton  complex)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 219
Effective number of orgs (counting one per cluster within 468 clusters): 153

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TTHE300852 ncbi Thermus thermophilus HB84
TTHE262724 ncbi Thermus thermophilus HB274
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-35
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SALA317655 ncbi Sphingopyxis alaskensis RB22565
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.5
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NSP35761 Nocardioides sp.4
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16225
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS105
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
MAER449447 ncbi Microcystis aeruginosa NIES-8434
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-65
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HNEP81032 Hyphomonas neptunium5
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
GVIO251221 ncbi Gloeobacter violaceus PCC 74215
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DSP255470 ncbi Dehalococcoides sp. CBDB14
DSP216389 ncbi Dehalococcoides sp. BAV14
DRED349161 ncbi Desulfotomaculum reducens MI-14
DRAD243230 ncbi Deinococcus radiodurans R14
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DETH243164 ncbi Dehalococcoides ethenogenes 1954
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP78 Caulobacter sp.5
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10624
CJAP155077 Cellvibrio japonicus5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CAULO ncbi Caulobacter crescentus CB155
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii4
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110175
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-15
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  G7705   G7539   EG12106   EG11798   EG11359   
YPSE349747 YPSIP31758_0955YPSIP31758_0963YPSIP31758_3371YPSIP31758_3372YPSIP31758_0963
YPSE273123 YPTB3063YPTB3055YPTB0706YPTB0705YPTB3055
YPES386656 YPDSF_0696YPDSF_0703YPDSF_2928YPDSF_2927YPDSF_0703
YPES377628 YPN_3018YPN_3010YPN_0662YPN_0661YPN_3010
YPES360102 YPA_0455YPA_0463YPA_2928YPA_2929YPA_0463
YPES349746 YPANGOLA_A3267YPANGOLA_A3259YPANGOLA_A1042YPANGOLA_A1043YPANGOLA_A3259
YPES214092 YPO3427YPO0806YPO3426YPO3427YPO0806
YPES187410 Y3202Y3195Y0760Y0759Y3195
YENT393305 YE3567YE3574YE0689YE0688YE3574
XORY360094 XOOORF_4563XOOORF_1525XOOORF_0389XOOORF_1526XOOORF_1525
XORY342109 XOO0772XOO1466XOO4144XOO1467XOO1466
XORY291331 XOO0848XOO1584XOO4400XOO1585XOO1584
XFAS405440 XFASM12_2108XFASM12_2107XFASM12_2114XFASM12_2108XFASM12_2107
XFAS183190 PD_1923PD_1922PD_0732PD_1923PD_1922
XFAS160492 XF2538XF2537XF1517XF2538XF2537
XCAM487884 XCC-B100_0774XCC-B100_1087XCC-B100_4291XCC-B100_1088XCC-B100_1087
XCAM316273 XCAORF_3763XCAORF_3447XCAORF_0159XCAORF_3763XCAORF_3447
XCAM314565 XC_0741XC_1056XC_4179XC_1057XC_1056
XCAM190485 XCC3423XCC3101XCC4088XCC3100XCC3101
XAXO190486 XAC0697XAC3243XAC4212XAC3242XAC3243
VVUL216895 VV1_0875VV1_1623VV1_1625VV1_1624VV1_1623
VVUL196600 VV0216VV2781VV2779VV2780VV2781
VPAR223926 VP0135VP2526VP2524VP2525VP2526
VFIS312309 VF2472VF2188VF2186VF2187VF2188
VEIS391735 VEIS_1631VEIS_3921VEIS_0688VEIS_0687VEIS_3921
VCHO345073 VC0395_A2304VC0395_A2002VC0395_A2000VC0395_A2001VC0395_A2002
VCHO VC2731VC2426VC2424VC2425VC2426
TTUR377629 TERTU_0267TERTU_3036TERTU_0266TERTU_3035TERTU_3036
TTHE300852 TTHA0794TTHA0269TTHA0794TTHA0269
TTHE262724 TT_C0440TT_C1716TT_C0440TT_C1716
TTEN273068 TTE1264TTE1266TTE1262TTE1264
TSP1755 TETH514_1506TETH514_1508TETH514_1504TETH514_1506
TPSE340099 TETH39_1069TETH39_1071TETH39_1067TETH39_1069
TDEN292415 TBD_0753TBD_2368TBD_0752TBD_2369TBD_2368
TCRU317025 TCR_0252TCR_1391TCR_0251TCR_0252TCR_1391
STYP99287 STM3442STM0143STM0142STM3442
SSP94122 SHEWANA3_0153SHEWANA3_0417SHEWANA3_0419SHEWANA3_0418SHEWANA3_0417
SSP321332 CYB_2141CYB_0909CYB_2141CYB_0909
SSP321327 CYA_1967CYA_1318CYA_1965CYA_1967CYA_1318
SSED425104 SSED_4356SSED_0423SSED_0425SSED_0424SSED_0423
SPRO399741 SPRO_4249SPRO_4241SPRO_0777SPRO_0776SPRO_4241
SPEA398579 SPEA_0146SPEA_0411SPEA_0413SPEA_0412SPEA_0411
SONE211586 SO_0168SO_0414SO_0416SO_0415SO_0414
SLOI323850 SHEW_3617SHEW_3440SHEW_3438SHEW_3439SHEW_3440
SHAL458817 SHAL_4172SHAL_0468SHAL_0470SHAL_0469SHAL_0468
SFUM335543 SFUM_0118SFUM_0214SFUM_0117SFUM_0118SFUM_0214
SENT454169 SEHA_C3746SEHA_C0157SEHA_C0156SEHA_C3746
SENT321314 SCH_3376SCH_0142SCH_0141SCH_3376
SENT295319 SPA3308SPA0147SPA0146SPA3308
SENT220341 STY4356STY0165STY0164STY4356
SENT209261 T4063T0149T0148T4063
SDEN318161 SDEN_0123SDEN_3391SDEN_3389SDEN_3390SDEN_3391
SDEG203122 SDE_3578SDE_0861SDE_3579SDE_0862SDE_0861
SBAL402882 SHEW185_0151SHEW185_3944SHEW185_3942SHEW185_3943SHEW185_3944
SBAL399599 SBAL195_0155SBAL195_4062SBAL195_4060SBAL195_4061SBAL195_4062
SALA317655 SALA_0317SALA_0326SALA_0316SALA_0317SALA_0326
SACI56780 SYN_01550SYN_00575SYN_01549SYN_01550SYN_00575
RSOL267608 RSC3116RSC2827RSC3115RSC3116RSC2827
RMET266264 RMET_3394RMET_3110RMET_3393RMET_3109RMET_3110
RFER338969 RFER_0544RFER_2904RFER_2902RFER_2903RFER_2904
REUT381666 H16_A3545H16_A3257H16_A3544H16_A3256H16_A3257
REUT264198 REUT_A3231REUT_A2962REUT_A3230REUT_A2961REUT_A2962
PTHE370438 PTH_1147PTH_1144PTH_1145PTH_1136
PSYR223283 PSPTO_3316PSPTO_0924PSPTO_0926PSPTO_0925PSPTO_0924
PSYR205918 PSYR_3150PSYR_0796PSYR_0798PSYR_0797PSYR_0796
PSTU379731 PST_0126PST_1057PST_1055PST_1056PST_1057
PSP56811 PSYCPRWF_0150PSYCPRWF_0149PSYCPRWF_0151PSYCPRWF_0150PSYCPRWF_0149
PSP296591 BPRO_1331BPRO_0843BPRO_0841BPRO_0842BPRO_0843
PPUT76869 PPUTGB1_1045PPUTGB1_0678PPUTGB1_1045PPUTGB1_0678
PPUT351746 PPUT_1089PPUT_0673PPUT_0674PPUT_0673
PPUT160488 PP_1048PP_0632PP_0633PP_0632
PPRO298386 PBPRA3479PBPRA3203PBPRA3201PBPRA3202PBPRA3203
PNAP365044 PNAP_0754PNAP_0768PNAP_0766PNAP_0767PNAP_0768
PMEN399739 PMEN_2924PMEN_0773PMEN_0775PMEN_0774PMEN_0773
PLUM243265 PLU1733PLU3639PLU3640PLU1186
PING357804 PING_0099PING_3325PING_0480PING_0481PING_3325
PHAL326442 PSHAA0234PSHAA0380PSHAA0378PSHAA0381PSHAA0380
PFLU220664 PFL_2758PFL_5289PFL_2757PFL_5288PFL_5289
PFLU216595 PFLU3230PFLU0790PFLU4080PFLU0791PFLU0790
PFLU205922 PFL_3173PFL_4822PFL_4820PFL_4821PFL_4822
PENT384676 PSEEN2334PSEEN4668PSEEN2333PSEEN4667PSEEN4668
PCRY335284 PCRYO_0256PCRYO_0067PCRYO_0069PCRYO_0068PCRYO_0067
PCAR338963 PCAR_2147PCAR_2139PCAR_2149PCAR_2147PCAR_2139
PATL342610 PATL_0233PATL_3342PATL_0232PATL_3343PATL_3342
PARC259536 PSYC_0063PSYC_0062PSYC_0064PSYC_0063PSYC_0062
PAER208964 PA3102PA4528PA4526PA4527PA4528
PAER208963 PA14_24010PA14_58770PA14_58750PA14_58760PA14_58770
NSP35761 NOCA_1127NOCA_1136NOCA_1127NOCA_2411
NSP103690 ALL2442ALR1315ALL2442ALR1315
NOCE323261 NOC_2894NOC_0310NOC_2895NOC_0311NOC_0310
NMUL323848 NMUL_A1904NMUL_A2131NMUL_A1903NMUL_A1904NMUL_A2131
NMEN374833 NMCC_1810NMCC_1811NMCC_1814NMCC_1810NMCC_1811
NMEN272831 NMC1838NMC1839NMC1844NMC1838NMC1839
NMEN122587 NMA2155NMA2156NMA2159NMA2155NMA2156
NMEN122586 NMB_0333NMB_0332NMB_0329NMB_0333NMB_0332
NGON242231 NGO1669NGO1670NGO1673NGO1669NGO1670
NEUT335283 NEUT_1043NEUT_1044NEUT_1043NEUT_1044
NEUR228410 NE0596NE0597NE0596NE0597
NARO279238 SARO_2651SARO_2305SARO_2652SARO_2651
MXAN246197 MXAN_2512MXAN_5779MXAN_5788MXAN_2512MXAN_5779
MTHE264732 MOTH_1552MOTH_1550MOTH_1554MOTH_1552
MSUC221988 MS0360MS0363MS0361MS0360
MPET420662 MPE_A3138MPE_A0507MPE_A0509MPE_A0508MPE_B0304
MMAR394221 MMAR10_0383MMAR10_0392MMAR10_0382MMAR10_0383MMAR10_0392
MFLA265072 MFLA_2142MFLA_2225MFLA_2141MFLA_2142MFLA_2225
MCAP243233 MCA_1115MCA_2094MCA_2096MCA_2095MCA_2094
MAQU351348 MAQU_1350MAQU_2683MAQU_2648MAQU_2682MAQU_2683
MAER449447 MAE_04110MAE_57525MAE_04110MAE_57525
LPNE400673 LPC_0779LPC_0943LPC_0941LPC_0942LPC_0943
LPNE297246 LPP1317LPP1481LPP1479LPP1480LPP1481
LPNE297245 LPL1314LPL1502LPL1504LPL1503LPL1502
LPNE272624 LPG1363LPG1524LPG1522LPG1523LPG1524
LCHO395495 LCHO_3429LCHO_0548LCHO_0550LCHO_3098LCHO_0548
KRAD266940 KRAD_3026KRAD_3020KRAD_1156KRAD_3026
KPNE272620 GKPORF_B4443GKPORF_B4434GKPORF_B4390GKPORF_B4389GKPORF_B4434
JSP375286 MMA_2997MMA_2998MMA_2996MMA_2997MMA_2998
ILOI283942 IL2024IL0450IL2025IL2024IL0450
HNEP81032 HNE_1867HNE_2653HNE_1866HNE_1867HNE_2653
HMOD498761 HM1_0251HM1_0253HM1_0249HM1_0251
HINF71421 HI_0296HI_0298HI_0297HI_0296
HINF281310 NTHI0406NTHI0408NTHI0407NTHI0406
HHAL349124 HHAL_2371HHAL_2022HHAL_2020HHAL_2371HHAL_2022
HCHE349521 HCH_03936HCH_05280HCH_05278HCH_05279HCH_05280
HARS204773 HEAR1952HEAR2791HEAR0759HEAR2790HEAR2791
GVIO251221 GLL2665GLR2433GLL0921GLL2665GLR2433
GURA351605 GURA_0681GURA_1800GURA_2682GURA_2680GURA_1800
GTHE420246 GTNG_2557GTNG_2555GTNG_2559GTNG_2557
GSUL243231 GSU_0327GSU_2043GSU_1491GSU_1493GSU_2043
GMET269799 GMET_3366GMET_0959GMET_1393GMET_1395GMET_0959
GKAU235909 GK2627GK2625GK2629GK2627
GBET391165 GBCGDNIH1_1757GBCGDNIH1_1690GBCGDNIH1_1756GBCGDNIH1_1690
FTUL458234 FTA_0876FTA_1010FTA_0877FTA_0876FTA_1010
FTUL418136 FTW_1167FTW_1045FTW_1166FTW_1167FTW_1045
FTUL401614 FTN_1116FTN_1000FTN_1115FTN_1116FTN_1000
FTUL393115 FTF1134FTF0683CFTF1133FTF1134FTF0683C
FTUL393011 FTH_0817FTH_0937FTH_0818FTH_0817FTH_0937
FTUL351581 FTL_0827FTL_0959FTL_0828FTL_0827FTL_0959
FRANT PILCPILDPILBPILCPILD
FPHI484022 FPHI_0118FPHI_1587FPHI_0117FPHI_0118FPHI_1587
EFER585054 EFER_2917EFER_2912EFER_0127EFER_0126EFER_3306
ECOO157 HOPDHOFBHOFCHOPD
ECOL83334 ECS4188ECS0111ECS0110ECS4188
ECOL585397 ECED1_3992ECED1_3615ECED1_0105ECED1_0104ECED1_3615
ECOL585057 ECIAI39_3454ECIAI39_3459ECIAI39_0107ECIAI39_0106ECIAI39_3816
ECOL585056 ECUMN_3442ECUMN_3447ECUMN_0104ECUMN_0103ECUMN_3796
ECOL585055 EC55989_3376EC55989_3381EC55989_0100EC55989_0099EC55989_3739
ECOL585035 ECS88_3715ECS88_3347ECS88_0109ECS88_0108ECS88_3723
ECOL585034 ECIAI1_3108ECIAI1_3113ECIAI1_0104ECIAI1_0103ECIAI1_3472
ECOL481805 ECOLC_0386ECOLC_0378ECOLC_3552ECOLC_3553ECOLC_0378
ECOL469008 ECBD_0424ECBD_0766ECBD_3512ECBD_3513ECBD_0416
ECOL439855 ECSMS35_3245ECSMS35_3250ECSMS35_0110ECSMS35_0109ECSMS35_3618
ECOL413997 ECB_03178ECB_02841ECB_00106ECB_00105ECB_03186
ECOL409438 ECSE_3243ECSE_3248ECSE_0107ECSE_0106ECSE_3597
ECOL405955 APECO1_3125APECO1_3455APECO1_1882APECO1_1883APECO1_3117
ECOL364106 UTI89_C3782UTI89_C3388UTI89_C0114UTI89_C0113UTI89_C3790
ECOL362663 ECP_3415ECP_3049ECP_0107ECP_0106ECP_3425
ECOL331111 ECE24377A_3425ECE24377A_3430ECE24377A_0109ECE24377A_3425ECE24377A_3806
ECOL316407 ECK3314:JW3289:B3327ECK2967:JW2939:B2972ECK0106:JW0103:B0107ECK0105:JW0102:B0106ECK3322:JW3297:B3335
ECOL199310 C4098C4106C0126C0125C4106
ECAR218491 ECA3107ECA3098ECA3799ECA3800ECA3098
DVUL882 DVU_1271DVU_1263DVU_1272DVU_1271DVU_1263
DSP255470 CBDBA1303CBDBA1313CBDBA1303CBDBA1313
DSP216389 DEHABAV1_1164DEHABAV1_1173DEHABAV1_1164DEHABAV1_1173
DRED349161 DRED_1036DRED_1047DRED_1034DRED_1036
DRAD243230 DR_1863DR_2065DR_1863DR_2065
DPSY177439 DP2782DP3017DP2226DP2782DP3017
DOLE96561 DOLE_1045DOLE_1855DOLE_2849DOLE_1855
DNOD246195 DNO_1125DNO_1124DNO_1126DNO_1125DNO_1124
DETH243164 DET_1352DET_1362DET_1352DET_1362
DARO159087 DARO_0880DARO_0637DARO_0879DARO_0638DARO_0637
CVIO243365 CV_3812CV_3826CV_3813CV_3827CV_3826
CSP78 CAUL_2090CAUL_2122CAUL_2089CAUL_2090CAUL_2122
CSAL290398 CSAL_2175CSAL_2176CSAL_2174CSAL_2175CSAL_2176
CPSY167879 CPS_4589CPS_4449CPS_4447CPS_4448CPS_4449
CPEL335992 SAR11_0058SAR11_0065SAR11_0058SAR11_0065
CJAP155077 CJA_3330CJA_2732CJA_3331CJA_2731CJA_2732
CHYD246194 CHY_0632CHY_0634CHY_0630CHY_0632
CDES477974 DAUD_0970DAUD_0967DAUD_0968DAUD_0970
CBUR434922 COXBU7E912_1953COXBU7E912_1951COXBU7E912_1952COXBU7E912_1953
CBUR360115 COXBURSA331_A0245COXBURSA331_A0247COXBURSA331_A0246COXBURSA331_A0245
CBUR227377 CBU_0153CBU_0155CBU_0154CBU_0153
CBOT508765 CLL_A3301CLL_A3303CLL_A3302CLL_A3301
CBEI290402 CBEI_4217CBEI_4219CBEI_4218CBEI_4217CBEI_4219
CAULO CC0175CC0184CC0174CC0175CC0184
BVIE269482 BCEP1808_0068BCEP1808_0551BCEP1808_0069BCEP1808_5248BCEP1808_0551
BTHA271848 BTH_I0009BTH_I1134BTH_I0008BTH_I0009BTH_I1134
BSP376 BRADO6347BRADO6338BRADO6348BRADO6338
BSP36773 BCEP18194_B1071BCEP18194_A3661BCEP18194_A3243BCEP18194_B1071BCEP18194_A3661
BPSE320373 BURPS668_0009BURPS668_3508BURPS668_0008BURPS668_0009BURPS668_3508
BPSE320372 BURPS1710B_A0234BURPS1710B_A3811BURPS1710B_A0233BURPS1710B_A0234BURPS1710B_A3811
BPSE272560 BPSL0009BPSL3010BPSL0008BPSL0009BPSL3010
BPET94624 BPET2866BPET0532BPET2864BPET0532
BMAL320389 BMA10247_2664BMA10247_3249BMA10247_2663BMA10247_2664BMA10247_3249
BMAL320388 BMASAVP1_A3516BMASAVP1_A0455BMASAVP1_A3517BMASAVP1_A3516BMASAVP1_A0455
BMAL243160 BMA_2784BMA_2533BMA_2785BMA_2784BMA_2533
BCEN331272 BCEN2424_0060BCEN2424_0576BCEN2424_0061BCEN2424_0060BCEN2424_0576
BCEN331271 BCEN_0010BCEN_0094BCEN_0009BCEN_0010BCEN_0094
BBAC264462 BD1595BD0862BD1509BD1595BD0862
BAMB398577 BAMMC406_0060BAMMC406_0504BAMMC406_0061BAMMC406_0060BAMMC406_0504
BAMB339670 BAMB_0050BAMB_0479BAMB_0051BAMB_0050BAMB_0479
AVAR240292 AVA_0374AVA_2985AVA_0374AVA_2985
ASP76114 EBA4913EBA4343EBA1622EBA1619EBA4343
ASP62977 ACIAD0411ACIAD0360ACIAD0362ACIAD0361ACIAD0360
ASP62928 AZO3235AZO3236AZO3234AZO3235AZO3236
ASP232721 AJS_0663AJS_0803AJS_0666AJS_0804AJS_0803
ASAL382245 ASA_3777ASA_0411ASA_0413ASA_3777ASA_0411
AORE350688 CLOS_1636CLOS_1634CLOS_1638CLOS_1636
AMET293826 AMET_3480AMET_3475AMET_3482AMET_3480
AMAR329726 AM1_0417AM1_2419AM1_2467AM1_0417AM1_2419
AHYD196024 AHA_0571AHA_3871AHA_3869AHA_3870AHA_3871
AFER243159 AFE_2075AFE_2840AFE_2843AFE_2075AFE_2840
AEHR187272 MLG_2392MLG_2081MLG_2079MLG_2080MLG_2081
ADEH290397 ADEH_0684ADEH_0637ADEH_0685ADEH_0624
ACEL351607 ACEL_1320ACEL_1314ACEL_1823ACEL_1320
ABOR393595 ABO_1313ABO_0612ABO_0614ABO_0613ABO_0612
ABAU360910 BAV0332BAV0331BAV0332BAV3046
ABAC204669 ACID345_1390ACID345_1591ACID345_1392ACID345_1390ACID345_1591
AAVE397945 AAVE_3974AAVE_3682AAVE_3680AAVE_3681AAVE_3682
AAEO224324 AQ_747AQ_1601AQ_1971AQ_747


Organism features enriched in list (features available for 206 out of the 219 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.170e-10892
Arrangment:Clusters 0.0051466117
Disease:Bubonic_plague 0.001855666
Disease:Gastroenteritis 0.00030411113
Disease:Tularemia 0.005336155
Endospores:No 2.198e-1237211
GC_Content_Range4:0-40 4.970e-2422213
GC_Content_Range4:40-60 3.558e-12118224
GC_Content_Range4:60-100 0.001083466145
GC_Content_Range7:0-30 1.626e-6347
GC_Content_Range7:30-40 6.383e-1619166
GC_Content_Range7:40-50 0.006271252117
GC_Content_Range7:50-60 4.772e-1066107
GC_Content_Range7:60-70 0.000263664134
Genome_Size_Range5:0-2 6.346e-1715155
Genome_Size_Range5:4-6 2.230e-1099184
Genome_Size_Range5:6-10 0.00068432747
Genome_Size_Range9:1-2 1.343e-1115128
Genome_Size_Range9:4-5 0.00099394796
Genome_Size_Range9:5-6 4.734e-75288
Genome_Size_Range9:6-8 0.00020672438
Gram_Stain:Gram_Neg 1.017e-19168333
Gram_Stain:Gram_Pos 7.075e-1615150
Habitat:Aquatic 0.00358764391
Habitat:Host-associated 2.266e-648206
Habitat:Multiple 0.002310077178
Motility:No 1.221e-826151
Motility:Yes 1.795e-8126267
Optimal_temp.:- 0.0001440111257
Optimal_temp.:30-37 0.0034756118
Optimal_temp.:37 0.000025520106
Oxygen_Req:Aerobic 0.003063579185
Oxygen_Req:Anaerobic 0.001893724102
Pathogenic_in:Human 0.009196764213
Pathogenic_in:Plant 0.00230131115
Shape:Coccus 0.00005601482
Shape:Rod 1.172e-9156347
Shape:Spiral 0.0000420234
Temp._range:Psychrophilic 0.000076599



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 348
Effective number of orgs (counting one per cluster within 468 clusters): 268

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP644076 Silicibacter sp. TrichCH4B0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1131 Synechococcus sp. CC96050
SSON300269 ncbi Shigella sonnei Ss0461
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHIGELLA ncbi Shigella flexneri 2a str. 2457T1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM1
JSP290400 ncbi Jannaschia sp. CCS10
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7705   G7539   EG12106   EG11798   EG11359   
ZMOB264203
XAUT78245 XAUT_2108
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TSP28240 TRQ2_1138
TROS309801 TRD_A0872
TPET390874 TPET_0992
TPEN368408
TPAL243276
TMAR243274 TM_1696
TKOD69014
TFUS269800
TDEN326298 TMDEN_0996
TDEN243275
TACI273075
STRO369723 STROP_4495
STOK273063
STHE322159
STHE299768 STR0722
STHE292459
STHE264199 STU0722
SSUI391296 SSU98_1682
SSUI391295 SSU05_1671
SSP644076
SSP292414
SSP1131
SSON300269 SSO_0114
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007 SMU_539C
SMEL266834
SMED366394
SMAR399550
SLAC55218
SHIGELLA HOFC
SHAE279808
SGOR29390
SGLO343509 SG0462
SERY405948 SACE_2064
SEPI176280
SEPI176279
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808 ROSERS_1565
RSP101510
RSAL288705
RRUB269796 RRU_A0108
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316055 RPE_2663
RPAL258594
RMAS416276
RLEG216596
RFEL315456
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PRUM264731
PPEN278197
PMOB403833
PMAR93060
PMAR59920
PMAR167555
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_0792
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109 OB0617
OCAR504832
OANT439375
NWIN323098
NSEN222891
NPHA348780
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177 BSPH_1682
LSAK314315 LSA1771
LREU557436 LREU_1489
LPLA220668 LP_1023
LMON265669
LMON169963
LMES203120
LLAC272623 L0332
LLAC272622
LJOH257314
LINT363253
LINN272626
LHEL405566 LHV_0307
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621 LBA0286
JSP290400
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279
HDUC233412
HBUT415426
HAUR316274
HACI382638
GOXY290633
GFOR411154
FSP1855
FSP106370
FNUC190304
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_3236
ECHA205920
ECAN269484
DSHI398580
DDES207559
CVES412965
CTRA471473 CTLON_0828
CTRA471472 CTL0834
CTET212717 CTC_02411
CTEP194439
CSUL444179
CSP501479
CRUT413404
CPNE182082 CPB0845
CPNE138677 CPJ0816
CPNE115713 CPN0816
CPNE115711 CP_1055
CPHY357809 CPHY_2819
CMUR243161 TC_0860
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_1111
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798
CGLU196627
CFEL264202 CF0067
CEFF196164
CDIP257309
CCHL340177
CCAV227941 CCA_00947
CBOT536232 CLM_1491
CBOT515621 CLJ_B1429
CBOT498213 CLD_3243
CBOT441772 CLI_1409
CBOT441771 CLC_1353
CBOT441770 CLB_1343
CBOT36826 CBO1316
CBLO291272
CBLO203907
CACE272562 CAC2784
CABO218497 CAB916
BXEN266265
BWEI315730 BCERKBAB4_1221
BTUR314724
BTRI382640
BTHU412694 BALH_1168
BTHU281309 BT9727_1197
BTHE226186
BSUI470137
BSUI204722
BSUB BSU28070
BSP107806
BQUI283165
BPUM315750 BPUM_2447
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010 BL00633
BJAP224911
BHER314723
BHEN283166
BHAL272558 BH3035
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264 BCA_1357
BCER405917 BCE_1419
BCER315749 BCER98_1027
BCER288681 BCE33L1199
BCER226900 BC_1306
BCAN483179
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BANT592021 BAA_1385
BANT568206 BAMEG_3279
BANT261594 GBAA1318
BANT260799 BAS1219
BAMY326423 RBAM_025120
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP1667
APLE434271 APJL_0891
APLE416269 APL_0879
APHA212042
APER272557
ANAE240017
AMAR234826
ALAI441768
AFUL224325
ACAU438753
ABUT367737
AAUR290340


Organism features enriched in list (features available for 324 out of the 348 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.880e-67192
Arrangment:Clusters 0.00054311617
Arrangment:Singles 0.0065054146286
Disease:Food_poisoning 0.004810199
Disease:Pharyngitis 0.008752688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00144651111
Disease:Wide_range_of_infections 0.00144651111
Disease:bronchitis_and_pneumonitis 0.008752688
Endospores:No 4.689e-13158211
GC_Content_Range4:0-40 2.431e-19169213
GC_Content_Range4:40-60 7.234e-1285224
GC_Content_Range4:60-100 0.009671070145
GC_Content_Range7:0-30 0.00002983947
GC_Content_Range7:30-40 6.485e-13130166
GC_Content_Range7:40-50 0.006074854117
GC_Content_Range7:50-60 5.598e-1031107
GC_Content_Range7:60-70 0.003805662134
Genome_Size_Range5:0-2 1.656e-19132155
Genome_Size_Range5:4-6 3.972e-970184
Genome_Size_Range5:6-10 0.00575891847
Genome_Size_Range9:0-1 7.822e-82727
Genome_Size_Range9:1-2 1.254e-12105128
Genome_Size_Range9:3-4 0.00550913377
Genome_Size_Range9:4-5 0.00024533896
Genome_Size_Range9:5-6 0.00004253288
Genome_Size_Range9:6-8 0.00123441238
Gram_Stain:Gram_Neg 9.751e-23128333
Gram_Stain:Gram_Pos 5.780e-19128150
Habitat:Aquatic 0.00074263791
Habitat:Host-associated 0.0001108135206
Motility:No 1.006e-8113151
Motility:Yes 1.065e-8115267
Optimal_temp.:- 0.0000226119257
Optimal_temp.:25-35 0.00275141314
Optimal_temp.:30-37 0.00031291718
Optimal_temp.:35-37 0.0003772113
Optimal_temp.:37 0.000387074106
Oxygen_Req:Aerobic 0.003394689185
Pathogenic_in:Animal 0.00211082666
Pathogenic_in:Human 0.0091314130213
Shape:Coccus 3.418e-66482
Shape:Irregular_coccus 0.00362791517
Shape:Rod 9.637e-9160347
Shape:Sphere 0.00641901619
Temp._range:Hyperthermophilic 0.00434011923



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181580.5735
AST-PWY (arginine degradation II (AST pathway))1201090.5696
GLYCOCAT-PWY (glycogen degradation I)2461670.5538
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001820.5150
PWY-5918 (heme biosynthesis I)2721710.5110
PWY-4041 (γ-glutamyl cycle)2791730.5065
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951370.4963
PWY-1269 (CMP-KDO biosynthesis I)3251860.4829
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861720.4821
TYRFUMCAT-PWY (tyrosine degradation I)1841300.4814
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481930.4785
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251460.4683
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391880.4646
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911710.4630
PWY-5386 (methylglyoxal degradation I)3051760.4626
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551570.4606
PWY-5913 (TCA cycle variation IV)3011740.4588
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961720.4574
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901690.4520
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911290.4510
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982040.4486
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761190.4266
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831220.4257
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911240.4146
PWY-5340 (sulfate activation for sulfonation)3851940.4059
PROSYN-PWY (proline biosynthesis I)4752180.4031
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222040.4003



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7539   EG12106   EG11798   EG11359   
G77050.9993440.999630.9997080.998626
G75390.99960.9997790.99993
EG121060.9998090.999436
EG117980.999676
EG11359



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PAIRWISE BLAST SCORES:

  G7705   G7539   EG12106   EG11798   EG11359   
G77050.0f0----
G7539-0.0f0--3.0e-19
EG12106--0.0f0--
EG11798---0.0f0-
EG11359-3.6e-13--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3382 (GspC-O secreton  complex) (degree of match pw to cand: 0.167, degree of match cand to pw: 0.400, average score: 0.987)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9986 EG11359 (gspO) EG11359-MONOMER (leader peptidase, integral membrane protein)
             0.8263 0.6049 EG12173 (gspM) EG12173-MONOMER (putative protein secretion protein)
             0.9639 0.9338 G7711 (gspL) G7711-MONOMER (putative protein secretion protein for export)
             0.9936 0.9915 G7710 (gspK) G7710-MONOMER (putative protein secretion protein for export)
             0.9873 0.9793 G7709 (gspJ) G7709-MONOMER (putative protein secretion protein for export)
             0.9895 0.9841 G7708 (gspI) G7708-MONOMER (putative protein secretion protein for export)
             0.7354 0.5028 G7707 (gspH) G7707-MONOMER (putative protein secretion protein for export)
             0.9982 0.9947 G7706 (gspG) G7706-MONOMER (putative protein secretion protein for export)
   *in cand* 0.9995 0.9986 G7705 (gspF) G7705-MONOMER (putative protein secretion protein for export)
             0.9992 0.9977 G7704 (gspE) G7704-MONOMER (putative protein secretion protein for export)
             0.9977 0.9950 G7703 (gspD) G7703-MONOMER (putative protein secretion protein for export)
             0.9680 0.9447 G7702 (gspC) G7702-MONOMER (putative protein secretion protein for export)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9997 EG11798 (hofC) EG11798-MONOMER (protein transport protein HofC)
   *in cand* 0.9997 0.9994 EG12106 (hofB) EG12106-MONOMER (protein involved in plasmid replication)
   *in cand* 0.9997 0.9993 G7539 (pppA) G7539-MONOMER (prepilin peptidase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11798 EG12106 (centered at EG12106)
EG11359 (centered at EG11359)
G7539 (centered at G7539)
G7705 (centered at G7705)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7705   G7539   EG12106   EG11798   EG11359   
237/623317/623237/623238/623216/623
AAEO224324:0:Tyes06018690-
AAVE397945:0:Tyes2892012
ABAC204669:0:Tyes020120201
ABAU360910:0:Tyes10-12721
ABOR393595:0:Tyes7190210
ACEL351607:0:Tyes605096-
ACRY349163:8:Tyes02---
ADEH290397:0:Tyes6013610-
AEHR187272:0:Tyes3112012
AFER243159:0:Tyes07547570754
AHYD196024:0:Tyes03182318031813182
AMAR329726:9:Tyes01976202401976
AMET293826:0:Tyes5075-
AORE350688:0:Tyes2042-
APLE416269:0:Tyes--0--
APLE434271:0:Tno--0--
ASAL382245:5:Tyes32430132430
ASP232721:2:Tyes01403141140
ASP62928:0:Tyes12012
ASP62977:0:Tyes470210
ASP76114:2:Tyes19461599101599
AVAR240292:3:Tyes02622-02622
BAMB339670:3:Tno045010450
BAMB398577:3:Tno045610456
BAMY326423:0:Tyes-0---
BANT260799:0:Tno-0---
BANT261594:2:Tno-0---
BANT568206:2:Tyes-0---
BANT592021:2:Tno-0---
BBAC264462:0:Tyes67405896740
BBRO257310:0:Tyes-0--3684
BCEN331271:2:Tno1840184
BCEN331272:3:Tyes051610516
BCER226900:1:Tyes-0---
BCER288681:0:Tno-0---
BCER315749:1:Tyes-0---
BCER405917:1:Tyes-0---
BCER572264:1:Tno-0---
BHAL272558:0:Tyes----0
BLIC279010:0:Tyes-0---
BMAL243160:1:Tno23002312300
BMAL320388:1:Tno29890299029890
BMAL320389:1:Tyes157601576
BPAR257311:0:Tno-0--0
BPER257313:0:Tyes-0--0
BPET94624:0:Tyes235402352-0
BPSE272560:1:Tyes13020013020
BPSE320372:1:Tno13448013448
BPSE320373:1:Tno13376013376
BPUM315750:0:Tyes-0---
BSP36773:1:Tyes0--0-
BSP36773:2:Tyes-4290-429
BSP376:0:Tyes9010-0
BSUB:0:Tyes-0---
BTHA271848:1:Tno11115011115
BTHU281309:1:Tno-0---
BTHU412694:1:Tno-0---
BVIE269482:6:Tyes---0-
BVIE269482:7:Tyes04721-472
BWEI315730:4:Tyes-0---
CABO218497:0:Tyes--0--
CACE272562:1:Tyes-0---
CAULO:0:Tyes1100110
CBEI290402:0:Tyes02102
CBOT36826:1:Tno-0---
CBOT441770:0:Tyes-0---
CBOT441771:0:Tno-0---
CBOT441772:1:Tno-0---
CBOT498213:1:Tno-0---
CBOT508765:1:Tyes0210-
CBOT515621:2:Tyes-0---
CBOT536232:0:Tno-0---
CBUR227377:1:Tyes-0210
CBUR360115:1:Tno-0210
CBUR434922:2:Tno-2012
CCAV227941:1:Tyes--0--
CCON360104:2:Tyes-0259--
CCUR360105:0:Tyes2140213--
CDES477974:0:Tyes3013-
CDIF272563:1:Tyes70---
CFEL264202:1:Tyes--0--
CFET360106:0:Tyes-0260--
CHOM360107:1:Tyes-080--
CHYD246194:0:Tyes2402-
CJAP155077:0:Tyes594159501
CKLU431943:1:Tyes-0---
CMUR243161:1:Tyes--0--
CNOV386415:0:Tyes180--
CPEL335992:0:Tyes07-07
CPER195102:1:Tyes021--
CPER195103:0:Tno021--
CPER289380:3:Tyes021--
CPHY357809:0:Tyes-0---
CPNE115711:1:Tyes--0--
CPNE115713:0:Tno--0--
CPNE138677:0:Tno--0--
CPNE182082:0:Tno--0--
CPRO264201:0:Fyes0-1--
CPSY167879:0:Tyes1412012
CSAL290398:0:Tyes12012
CSP78:2:Tyes1330133
CTET212717:0:Tyes-0---
CTRA471472:0:Tyes--0--
CTRA471473:0:Tno--0--
CVIO243365:0:Tyes01411514
DARO159087:0:Tyes253025210
DETH243164:0:Tyes010-010
DGEO319795:1:Tyes3820-382-
DHAF138119:0:Tyes-030--
DNOD246195:0:Tyes10210
DOLE96561:0:Tyes0811-1822811
DPSY177439:2:Tyes5728100572810
DRAD243230:3:Tyes0197-0197
DRED349161:0:Tyes21302-
DSP216389:0:Tyes09-09
DSP255470:0:Tno09-09
DVUL882:1:Tyes80980
ECAR218491:0:Tyes907277280
ECOL199310:0:Tno38823890103890
ECOL316407:0:Tno38402866103832
ECOL331111:6:Tno31723177031723542
ECOL362663:0:Tno33072939103317
ECOL364106:1:Tno36583268103666
ECOL405955:2:Tyes32822945103291
ECOL409438:6:Tyes31983203103561
ECOL413997:0:Tno30992753103107
ECOL439855:4:Tno30323037103391
ECOL469008:0:Tno8358309530960
ECOL481805:0:Tno80319231930
ECOL585034:0:Tno29682973103332
ECOL585035:0:Tno34883123103496
ECOL585055:0:Tno32393244103602
ECOL585056:2:Tno33443349203703
ECOL585057:0:Tno33583363103726
ECOL585397:0:Tno37753403103403
ECOL83334:0:Tno-4178104178
ECOLI:0:Tno32842929103292
ECOO157:0:Tno-4190104190
EFAE226185:3:Tyes-0---
EFER585054:1:Tyes27722767103161
ESP42895:1:Tyes0-10-
FNOD381764:0:Tyes11618850--
FPHI484022:1:Tyes11519011519
FRANT:0:Tno41804174180
FSUC59374:0:Tyes01011-0-
FTUL351581:0:Tno012110121
FTUL393011:0:Tno0951095
FTUL393115:0:Tyes41604154160
FTUL401614:0:Tyes11401131140
FTUL418136:0:Tno11201111120
FTUL458234:0:Tno010510105
GBET391165:0:Tyes67066-0
GKAU235909:1:Tyes2042-
GMET269799:1:Tyes240904324340
GSUL243231:0:Tyes01706115511571706
GTHE420246:1:Tyes2042-
GURA351605:0:Tyes01108199319911108
GVIO251221:0:Tyes17671531017671531
HARS204773:0:Tyes11301921019201921
HCHE349521:0:Tyes01320131813191320
HHAL349124:0:Tyes354203542
HINF281310:0:Tyes-0210
HINF374930:0:Tyes-201-
HINF71421:0:Tno-0210
HMOD498761:0:Tyes2042-
HNEP81032:0:Tyes177501775
HSOM205914:1:Tyes-0--0
HSOM228400:0:Tno-0--0
ILOI283942:0:Tyes16130161416130
JSP375286:0:Tyes12012
KPNE272620:2:Tyes54451045
KRAD266940:2:Fyes2689269502689-
LACI272621:0:Tyes-0---
LBIF355278:2:Tyes2690---
LBIF456481:2:Tno2750---
LBOR355276:1:Tyes0-1--
LBOR355277:1:Tno0-1--
LCHO395495:0:Tyes29070225760
LHEL405566:0:Tyes-0---
LINT189518:1:Tyes0-1--
LINT267671:1:Tno1-0--
LLAC272623:0:Tyes-0---
LPLA220668:0:Tyes-0---
LPNE272624:0:Tno0161159160161
LPNE297245:1:Fno0186188187186
LPNE297246:1:Fyes0164162163164
LPNE400673:0:Tno0163161162163
LREU557436:0:Tyes-0---
LSAK314315:0:Tyes-0---
LSPH444177:1:Tyes-0---
MAER449447:0:Tyes05385-05385
MAQU351348:2:Tyes01320128513191320
MCAP243233:0:Tyes0938940939938
MFLA265072:0:Tyes1840184
MLOT266835:2:Tyes0---5
MMAR394221:0:Tyes1100110
MPET420662:0:Tyes----0
MPET420662:1:Tyes2624021-
MSP400668:0:Tyes-0--0
MSUC221988:0:Tyes-0310
MTHE264732:0:Tyes2042-
MXAN246197:0:Tyes03156316503156
NARO279238:0:Tyes3580359358-
NEUR228410:0:Tyes01-01
NEUT335283:2:Tyes01-01
NGON242231:0:Tyes01401
NHAM323097:2:Tyes90--0
NMEN122586:0:Tno43043
NMEN122587:0:Tyes01401
NMEN272831:0:Tno01401
NMEN374833:0:Tno01401
NMUL323848:3:Tyes122601226
NOCE323261:1:Tyes25430254410
NSP103690:6:Tyes11410-11410
NSP35761:1:Tyes09-01293
NSP387092:0:Tyes-950--
OIHE221109:0:Tyes-0---
PAER208963:0:Tyes02834283228332834
PAER208964:0:Tno01444144214431444
PARC259536:0:Tyes10210
PATL342610:0:Tyes13140031413140
PCAR338963:0:Tyes801080
PCRY335284:1:Tyes1890210
PENT384676:0:Tyes12198021972198
PFLU205922:0:Tyes01673167116721673
PFLU216595:1:Tyes23470317510
PFLU220664:0:Tyes12495024942495
PHAL326442:1:Tyes0145143146145
PING357804:0:Tyes030433643653043
PLUM243265:0:Fyes-578249724980
PLUT319225:0:Tyes-0---
PMAR167546:0:Tyes10-1-
PMAR74546:0:Tyes10-1-
PMAR74547:0:Tyes-533-0-
PMEN399739:0:Tyes21890210
PMUL272843:1:Tyes-1-0-
PNAP365044:8:Tyes014121314
PPRO298386:2:Tyes2762012
PPUT160488:0:Tno4160-10
PPUT351746:0:Tyes4140-10
PPUT76869:0:Tno3700-3700
PSP117:0:Tyes02872---
PSP296591:2:Tyes4902012
PSP312153:0:Tyes-0--0
PSP56811:2:Tyes10210
PSTU379731:0:Tyes0931929930931
PSYR205918:0:Tyes23590210
PSYR223283:2:Tyes23610210
PTHE370438:0:Tyes11890-
RALB246199:0:Tyes249801--
REUT264198:3:Tyes279127801
REUT381666:2:Tyes274127301
RFER338969:1:Tyes02360235823592360
RMET266264:2:Tyes285128401
RPAL316055:0:Tyes--0--
RPAL316056:0:Tyes04---
RRUB269796:1:Tyes-0---
RSOL267608:1:Tyes30703063070
RSP357808:0:Tyes-0---
RXYL266117:0:Tyes100-10-
SACI56780:0:Tyes111201112
SALA317655:1:Tyes1100110
SBAL399599:3:Tyes04009400740084009
SBAL402882:1:Tno03866386438653866
SBOY300268:1:Tyes2749--0-
SDEG203122:0:Tyes27480274910
SDEN318161:0:Tyes03344334233433344
SDYS300267:1:Tyes2794-02794-
SELO269084:0:Tyes0137-0-
SENT209261:0:Tno-3735103735
SENT220341:0:Tno-3791103791
SENT295319:0:Tno-3040103040
SENT321314:2:Tno-3293103293
SENT454169:2:Tno-3457103457
SERY405948:0:Tyes-0---
SFLE198214:0:Tyes-3138-03138
SFLE373384:0:Tno-3073-03073
SFUM335543:0:Tyes1950195
SGLO343509:3:Tyes---0-
SHAL458817:0:Tyes38120210
SHIGELLA:0:Tno---0-
SLOI323850:0:Tyes1892012
SMUT210007:0:Tyes-0---
SONE211586:1:Tyes0244246245244
SPEA398579:0:Tno0289291290289
SPRO399741:1:Tyes35213513103513
SSED425104:0:Tyes40570210
SSON300269:1:Tyes---0-
SSP1148:0:Tyes-0--0
SSP321327:0:Tyes62106196210
SSP321332:0:Tyes12030-12030
SSP387093:0:Tyes-1720--
SSP64471:0:Tyes-1654-0-
SSP84588:0:Tyes-782-0-
SSP94122:1:Tyes0280282281280
SSUI391295:0:Tyes-0---
SSUI391296:0:Tyes-0---
STHE264199:0:Tyes-0---
STHE299768:0:Tno-0---
STRO369723:0:Tyes-0---
STYP99287:1:Tyes-3276103276
SWOL335541:0:Tyes05-0-
TCRU317025:0:Tyes11171011171
TDEN292415:0:Tyes11641016421641
TDEN326298:0:Tyes-0---
TELO197221:0:Tyes-3660-366
TERY203124:0:Tyes-867-0-
TLET416591:0:Tyes50001063--
TMAR243274:0:Tyes-0---
TPET390874:0:Tno-0---
TPSE340099:0:Tyes2402-
TROS309801:0:Tyes-0---
TSP1755:0:Tyes2402-
TSP28240:0:Tyes-0---
TTEN273068:0:Tyes2402-
TTHE262724:1:Tyes01299-01299
TTHE300852:2:Tyes5420-5420
TTUR377629:0:Tyes12470024692470
VCHO:0:Tyes3112012
VCHO345073:1:Tno2962012
VEIS391735:1:Tyes9313206103206
VFIS312309:2:Tyes3062012
VPAR223926:1:Tyes02439243724382439
VVUL196600:2:Tyes02608260626072608
VVUL216895:1:Tno0725727726725
WSUC273121:0:Tyes-0--0
XAUT78245:1:Tyes0----
XAXO190486:0:Tyes02546351525452546
XCAM190485:0:Tyes323198801
XCAM314565:0:Tno03083448309308
XCAM316273:0:Tno35473232035473232
XCAM487884:0:Tno03133564314313
XFAS160492:2:Tno10171016010171016
XFAS183190:1:Tyes11701169011701169
XFAS405440:0:Tno10610
XORY291331:0:Tno07473598748747
XORY342109:0:Tyes07053418706705
XORY360094:0:Tno80622202022042202
YENT393305:1:Tyes27902798102798
YPES187410:5:Tno24582451102451
YPES214092:3:Tno25120251125120
YPES349746:2:Tno21712164012164
YPES360102:3:Tyes08251225138
YPES377628:2:Tno24022394102394
YPES386656:2:Tno07224022397
YPSE273123:2:Tno23882380102380
YPSE349747:2:Tno07239123927



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