CANDIDATE ID: 561

CANDIDATE ID: 561

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9920940e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7789 (dgoR) (b3695 (obsolete))
   Products of gene:
     - G7790-MONOMER (predicted DNA-binding transcriptional regulator)

- G7678 (nanR) (b3226)
   Products of gene:
     - G7678-MONOMER (NanR DNA binding transcriptional dual regulator)
       Regulatees:
        TU00410 (fimB)
        TU0-1601 (nanATEK-yhcH)
        TU0-6843 (nanCM)
     - MONOMER0-2341 (NanR-NANA)

- G7546 (glcC) (b2980)
   Products of gene:
     - G7546-MONOMER (GlcC transcriptional dual regulator)
     - MONOMER0-562 (GlcC-Glycolate transcriptional dual regulator)
       Regulatees:
        TU0-1962 (glcDEFGBA)
        TU0-1963 (glcC)

- EG11962 (lldR) (b3604)
   Products of gene:
     - EG11962-MONOMER (LldR transcriptional repressor)
       Regulatees:
        TU164 (lldPRD)
     - CPLX0-7689 (LldR-L-lactose transcriptional activator)
       Regulatees:
        TU164 (lldPRD)

- EG11088 (pdhR) (b0113)
   Products of gene:
     - EG11088-MONOMER (PdhR transcriptional dual regulator)
       Regulatees:
        TU0-7806 (hemL)
        TU0-12943 (tomB-hha)
        TU00101 (cyoABCDE)
        TU00158 (ndh)
        TU0-1143 (yfiD)
        TU00151 (fecABCDE)
        TU00522 (pdhR-aceEF-lpdA)
     - MONOMER-59 (PdhR-pyruvate)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 199
Effective number of orgs (counting one per cluster within 468 clusters): 131

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-35
SSP644076 Silicibacter sp. TrichCH4B5
SSP292414 ncbi Ruegeria sp. TM10405
SSON300269 ncbi Shigella sonnei Ss0465
SPYO370552 ncbi Streptococcus pyogenes MGAS102704
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705854
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAVE227882 ncbi Streptomyces avermitilis MA-46805
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99415
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP101510 ncbi Rhodococcus jostii RHA15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 425
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PMEN399739 ncbi Pseudomonas mendocina ymp5
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NSP35761 Nocardioides sp.4
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC15
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
LMON169963 ncbi Listeria monocytogenes EGD-e4
LINN272626 ncbi Listeria innocua Clip112624
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP290400 ncbi Jannaschia sp. CCS15
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HCHE349521 ncbi Hahella chejuensis KCTC 23964
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-14
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CTET212717 ncbi Clostridium tetani E884
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CNOV386415 ncbi Clostridium novyi NT4
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BXEN266265 ncbi Burkholderia xenovorans LB4005
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128225
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1255
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB505
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP62977 ncbi Acinetobacter sp. ADP14
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714


Names of the homologs of the genes in the group in each of these orgs
  G7789   G7678   G7546   EG11962   EG11088   
YPSE349747 YPSIP31758_0011YPSIP31758_2703YPSIP31758_3364YPSIP31758_3364YPSIP31758_3364
YPSE273123 YPTB0011YPTB1313YPTB0712YPTB0712YPTB0712
YPES386656 YPDSF_3893YPDSF_2934YPDSF_2934YPDSF_2934
YPES377628 YPN_0011YPN_2697YPN_0668YPN_0668YPN_0668
YPES360102 YPA_0014YPA_0997YPA_2922YPA_2922YPA_2922
YPES349746 YPANGOLA_A0011YPANGOLA_A1506YPANGOLA_A1035YPANGOLA_A1035YPANGOLA_A1035
YPES214092 YPO0010YPO1279YPO3420YPO3420YPO3420
YPES187410 Y0011Y2904Y0766Y0766Y0766
YENT393305 YE0014YE1437YE0698YE0698YE0698
XAUT78245 XAUT_4654XAUT_1624XAUT_4351XAUT_3930XAUT_4351
VVUL216895 VV1_1629VV1_1629VV1_1629VV1_1629
VVUL196600 VVA1573VV2774VV2774VV2774
VPAR223926 VP2520VP2520VP2520VP2520
VEIS391735 VEIS_3460VEIS_3567VEIS_3567VEIS_1542
VCHO345073 VC0395_A1991VC0395_A1991VC0395_A1991VC0395_A1991
VCHO VC2415VC2415VC2415VC2415
STYP99287 STM3830STM3340STM0151STM3693STM0151
STHE292459 STH97STH97STH97STH97
SSP94122 SHEWANA3_2068SHEWANA3_0425SHEWANA3_0425SHEWANA3_0425SHEWANA3_0425
SSP644076 SCH4B_0609SCH4B_0021SCH4B_2769SCH4B_2769SCH4B_2769
SSP292414 TM1040_3704TM1040_3872TM1040_2589TM1040_2589TM1040_2589
SSON300269 SSO_3645SSO_3367SSO_0121SSO_3801SSO_0121
SPYO370552 MGAS10270_SPY1173MGAS10270_SPY1173MGAS10270_SPY1173MGAS10270_SPY1173
SPRO399741 SPRO_0041SPRO_0041SPRO_4012SPRO_4012SPRO_4012
SPNE488221 SP70585_2240SP70585_2240SP70585_2240SP70585_2240
SPEA398579 SPEA_1517SPEA_0418SPEA_0418SPEA_0418
SONE211586 SO_0423SO_0423SO_0423SO_0423SO_0423
SMEL266834 SMB21591SMB20294SMC00829SMC00829SMC00829
SMED366394 SMED_4912SMED_3837SMED_0391SMED_0391SMED_0391
SLOI323850 SHEW_3176SHEW_3176SHEW_3432SHEW_3432SHEW_3432
SLAC55218 SL1157_1855SL1157_1855SL1157_1855SL1157_1855
SHIGELLA YIDWYHCKGLCCLLDRPDHR
SHAL458817 SHAL_1960SHAL_0475SHAL_0475SHAL_0475
SGLO343509 SG0005SG0241SG0466SG0466SG0466
SFUM335543 SFUM_1522SFUM_1522SFUM_1522SFUM_1522SFUM_1522
SFLE373384 SFV_3744SFV_3251SFV_3035SFV_3927SFV_0104
SFLE198214 AAN45212.1AAN44726.1AAN44498.1AAN45090.1AAN41774.1
SERY405948 SACE_3357SACE_5169SACE_3859SACE_3859SACE_3859
SENT454169 SEHA_C4164SEHA_C3638SEHA_C0165SEHA_C4017SEHA_C0165
SENT321314 SCH_3748SCH_3278SCH_0150SCH_3617SCH_0150
SENT295319 SPA3727SPA3208SPA0155SPA3545SPA0155
SENT220341 STY3888STY3521STY0174STY4103STY0174
SENT209261 T3631T3257T0157T3826T0157
SDYS300267 SDY_3992SDY_3401SDY_0143SDY_4037SDY_0143
SDEN318161 SDEN_3384SDEN_3384SDEN_3384SDEN_3384
SDEG203122 SDE_1092SDE_1270SDE_0954SDE_1270
SCO SCO1177SCO0582SCO2442SCO2442SCO2442
SBOY300268 SBO_3163SBO_0102SBO_3609SBO_0102
SBAL402882 SHEW185_3935SHEW185_1154SHEW185_3935SHEW185_3935SHEW185_3935
SBAL399599 SBAL195_4055SBAL195_4055SBAL195_4055SBAL195_4055SBAL195_4055
SAVE227882 SAV6630SAV1318SAV7278SAV7278SAV1318
RXYL266117 RXYL_0539RXYL_0539RXYL_2589RXYL_2589RXYL_2589
RSPH349102 RSPH17025_3571RSPH17025_0194RSPH17025_0194RSPH17025_0194RSPH17025_0194
RSPH349101 RSPH17029_3616RSPH17029_0260RSPH17029_2695RSPH17029_2695RSPH17029_2695
RSPH272943 RSP_3339RSP_1034RSP_1034RSP_1034RSP_1034
RSP101510 RHA1_RO02364RHA1_RO02909RHA1_RO02909RHA1_RO08849RHA1_RO08849
RSOL267608 RSC1078RSC1078RSC1078RSC1078RSC1078
RMET266264 RMET_1141RMET_1834RMET_5900RMET_5900RMET_5900
RLEG216596 RL3839PRL120397RL2337PRL120399PRL120779
RFER338969 RFER_0447RFER_0202RFER_0202RFER_0202RFER_0202
REUT381666 H16_B0929H16_A1563H16_B2456H16_B0094H16_B0094
REUT264198 REUT_A2447REUT_B3714REUT_B3714REUT_B5449REUT_B5449
RETL347834 RHE_CH03696RHE_PF00043RHE_CH02059RHE_PF00067RHE_PF00235
RDEN375451 RD1_0925RD1_1326RD1_1326RD1_1326
PTHE370438 PTH_2233PTH_2233PTH_2232PTH_2233
PSTU379731 PST_0430PST_0430PST_0430PST_3335PST_3335
PSP296591 BPRO_3530BPRO_0095BPRO_3977BPRO_3963BPRO_4884
PPUT76869 PPUTGB1_1319PPUTGB1_1885PPUTGB1_2160PPUTGB1_4735PPUTGB1_4735
PPUT351746 PPUT_3992PPUT_1886PPUT_2019PPUT_4600PPUT_4600
PPUT160488 PP_1727PP_3744PP_4734PP_4734
PPRO298386 PBPRA3586PBPRA3197PBPRA3197PBPRA3197
PMEN399739 PMEN_3633PMEN_0204PMEN_0204PMEN_3633PMEN_3633
PING357804 PING_2982PING_2928PING_2928PING_2928PING_2928
PHAL326442 PSHAB0152PSHAA0390PSHAA0390PSHAA0390
PFLU220664 PFL_4386PFL_2270PFL_2270PFL_0818PFL_0818
PFLU216595 PFLU2366PFLU4259PFLU5277PFLU5277PFLU5277
PFLU205922 PFL_3228PFL_3719PFL_0754PFL_0754PFL_0754
PENT384676 PSEEN0729PSEEN0769PSEEN0769PSEEN0769
PATL342610 PATL_3532PATL_3349PATL_3349PATL_3349
PAER208964 PA1627PA5356PA5356PA4769PA4769
PAER208963 PA14_43480PA14_70710PA14_70710PA14_63070PA14_63070
OIHE221109 OB2842OB0369OB0369OB0369
OANT439375 OANT_1414OANT_3068OANT_3007OANT_3007OANT_3007
NSP35761 NOCA_4197NOCA_4197NOCA_4197NOCA_2132
NMEN374833 NMCC_1623NMCC_1623NMCC_1623NMCC_1623
NMEN272831 NMC1629NMC1629NMC1629NMC1629
NMEN122587 NMA1965NMA1965NMA1965NMA1965
NMEN122586 NMB_1711NMB_1711NMB_1711NMB_1711
NGON242231 NGO1360NGO1360NGO1360NGO1360
MTHE264732 MOTH_1310MOTH_2274MOTH_2304MOTH_2304MOTH_2304
MSP400668 MMWYL1_3213MMWYL1_0071MMWYL1_0071MMWYL1_0071
MSP266779 MESO_1867MESO_3282MESO_0366MESO_0366MESO_0366
MSP189918 MKMS_5416MKMS_4157MKMS_4471MKMS_0349
MSP164757 MJLS_5706MJLS_4148MJLS_4765MJLS_0328
MSP164756 MMCS_5327MMCS_4081MMCS_4384MMCS_0339
MSME246196 MSMEG_0454MSMEG_4121MSMEG_0596MSMEG_2794MSMEG_2605
MMAG342108 AMB0238AMB0238AMB0238AMB0238
MLOT266835 MLL7079MLR7008MLL6911MLL6911MLL6911
LMON169963 LMO0948LMO0948LMO0948LMO0948
LINN272626 LIN0947LIN0947LIN0947LIN0947
KPNE272620 GKPORF_B1413GKPORF_B1413GKPORF_B4399GKPORF_B3310GKPORF_B4399
JSP290400 JANN_1244JANN_3067JANN_1666JANN_1666JANN_1666
ILOI283942 IL0306IL0457IL0457IL0457
HMOD498761 HM1_3142HM1_3142HM1_3142HM1_3142
HCHE349521 HCH_01271HCH_01271HCH_01271HCH_01271
GURA351605 GURA_2197GURA_0158GURA_0158GURA_2197
GSUL243231 GSU_3396GSU_1626GSU_1626GSU_1626
GKAU235909 GK0396GK0396GK2015GK2015
ESP42895 ENT638_0006ENT638_3662ENT638_0659ENT638_0131ENT638_0659
EFER585054 EFER_3990EFER_3197EFER_0133EFER_3598EFER_0133
ECOO157 YIEPYHCKPDHRLLDRPDHR
ECOL83334 ECS4099ECS0117ECS4482ECS0117
ECOL585397 ECED1_4386ECED1_3877ECED1_3623ECED1_4290ECED1_0117
ECOL585057 ECIAI39_4297ECIAI39_3715ECIAI39_3468ECIAI39_4125ECIAI39_0113
ECOL585056 ECUMN_4226ECUMN_3700ECUMN_3456ECUMN_4119ECUMN_0110
ECOL585055 EC55989_4164EC55989_3639EC55989_0106EC55989_4071EC55989_0106
ECOL585035 ECS88_4118ECS88_3603ECS88_3355ECS88_4021ECS88_0121
ECOL585034 ECIAI1_3873ECIAI1_3368ECIAI1_3122ECIAI1_3777ECIAI1_0110
ECOL481805 ECOLC_0008ECOLC_0480ECOLC_0720ECOLC_0104ECOLC_3546
ECOL469008 ECBD_0008ECBD_0521ECBD_0758ECBD_0121ECBD_3506
ECOL439855 ECSMS35_1098ECSMS35_3521ECSMS35_3258ECSMS35_3941ECSMS35_0123
ECOL413997 ECB_03578ECB_03086ECB_02849ECB_03462ECB_00112
ECOL409438 ECSE_3981ECSE_3505ECSE_3258ECSE_3886ECSE_0113
ECOL405955 APECO1_2762APECO1_3217APECO1_3447APECO1_2851APECO1_1872
ECOL364106 UTI89_C4246UTI89_C3656UTI89_C3395UTI89_C4145UTI89_C0125
ECOL362663 ECP_3896ECP_3309ECP_3058ECP_3705ECP_0119
ECOL331111 ECE24377A_4204ECE24377A_3708ECE24377A_3440ECE24377A_4108ECE24377A_0115
ECOL316407 ECK3687:JW5627:B4479ECK3215:JW3195:B3226ECK2975:JW2947:B2980ECK3594:JW3579:B3604ECK0112:JW0109:B0113
ECOL199310 C4616C3980C3710C4426C0140
ECAR218491 ECA4419ECA1092ECA3790ECA3790ECA3790
DSHI398580 DSHI_1972DSHI_3026DSHI_3026DSHI_3026
DRED349161 DRED_2187DRED_2187DRED_2187DRED_2188
DHAF138119 DSY3246DSY2275DSY2275DSY2275DSY2275
DARO159087 DARO_1767DARO_1767DARO_1767DARO_1767DARO_1767
CVIO243365 CV_3037CV_3037CV_3037CV_3037CV_3037
CTET212717 CTC_00971CTC_00971CTC_00971CTC_00971
CSP78 CAUL_1284CAUL_1834CAUL_1426CAUL_1834
CSP501479 CSE45_2503CSE45_5390CSE45_4250CSE45_4250CSE45_4250
CSAL290398 CSAL_2616CSAL_3193CSAL_0403CSAL_0403CSAL_0403
CPHY357809 CPHY_3829CPHY_3829CPHY_1313CPHY_3829
CNOV386415 NT01CX_1608NT01CX_1608NT01CX_1608NT01CX_1608
CKLU431943 CKL_2070CKL_2070CKL_1694CKL_2524
CHYD246194 CHY_0434CHY_0434CHY_0434CHY_0434
CDIF272563 CD1073CD1169CD1169CD3565
CBOT536232 CLM_1755CLM_1249CLM_1249CLM_1755
CBOT515621 CLJ_B1618CLJ_B1140CLJ_B1618CLJ_B1618
CBOT498213 CLD_3034CLD_3469CLD_3034CLD_3034
CBOT441772 CLI_1600CLI_1180CLI_1600CLI_1600
CBOT441771 CLC_1553CLC_1143CLC_1143CLC_1553
CBOT441770 CLB_1541CLB_1131CLB_1131CLB_1541
CBOT36826 CBO1520CBO1091CBO1091CBO1520
CBEI290402 CBEI_5004CBEI_5004CBEI_0309CBEI_4096CBEI_5004
CACE272562 CAC2546CAC2546CAC2546CAC2546
BXEN266265 BXE_B1824BXE_B2173BXE_B1175BXE_B1175BXE_B1175
BWEI315730 BCERKBAB4_1217BCERKBAB4_1217BCERKBAB4_1217BCERKBAB4_1217
BVIE269482 BCEP1808_2777BCEP1808_1082BCEP1808_2855BCEP1808_2855BCEP1808_2855
BTHU281309 BT9727_1193BT9727_1193BT9727_1193BT9727_1193
BTHA271848 BTH_I2515BTH_II0978BTH_II2081BTH_II2081BTH_II2081
BSUI470137 BSUIS_B1410BSUIS_B0180BSUIS_B0180BSUIS_B0180BSUIS_B0180
BSUI204722 BR_A1179BR_0560BR_A0177BR_A0177BR_A0177
BSUB BSU02500BSU34180BSU34180BSU34180
BSP36773 BCEP18194_A4692BCEP18194_B0628BCEP18194_B0034BCEP18194_B0034BCEP18194_A6080
BPSE320373 BURPS668_A3101BURPS668_A2012BURPS668_A0554BURPS668_A0554BURPS668_A0554
BPSE320372 BURPS1710B_B1565BURPS1710B_B0532BURPS1710B_B2204BURPS1710B_B2204BURPS1710B_B2204
BPSE272560 BPSS2204BPSS1414BPSS0320BPSS0320BPSS0320
BPET94624 BPET4865BPET3949BPET4865BPET4865BPET4865
BPER257313 BP3547BP3681BP3681BP3681
BPAR257311 BPP0928BPP2551BPP0097BPP0097BPP0097
BOVI236 GBOORFA0972GBOORF0587GBOORFA0169GBOORFA0169GBOORFA0169
BMEL359391 BAB2_0290BAB2_0172BAB2_0172BAB2_0172BAB2_0172
BMEL224914 BMEII0352BMEII1066BMEII1066BMEII1066BMEII1066
BMAL320389 BMA10247_1016BMA10247_A1856BMA10247_A0866BMA10247_A0866BMA10247_A0866
BMAL243160 BMA_1259BMA_A0578BMA_A1432BMA_A1432BMA_A1432
BLIC279010 BL03455BL03455BL03455BL03455
BJAP224911 BLR3204BLL6835BLL6835BLL6835
BHAL272558 BH0873BH1835BH1835BH1835BH1835
BCLA66692 ABC3016ABC0978ABC4039ABC0978ABC4038
BCER405917 BCE_1415BCE_1415BCE_1415BCE_1415
BCER315749 BCER98_1023BCER98_1023BCER98_1023BCER98_1023BCER98_1023
BCER288681 BCE33L1195BCE33L1195BCE33L1195BCE33L1195
BCER226900 BC_1302BC_1302BC_1302BC_1302BC_1302
BCEN331272 BCEN2424_1550BCEN2424_5035BCEN2424_6710BCEN2424_6710BCEN2424_6710
BCEN331271 BCEN_1070BCEN_3332BCEN_6475BCEN_6475BCEN_6475
BCAN483179 BCAN_B1210BCAN_B0177BCAN_B0177BCAN_B0177BCAN_B0177
BBRO257310 BB1138BB1996BB0096BB0096BB0096
BANT592021 BAA_1381BAA_1381BAA_1381BAA_1381
BANT568206 BAMEG_3283BAMEG_3283BAMEG_3283BAMEG_3283
BANT261594 GBAA1314GBAA1314GBAA1314GBAA1314
BANT260799 BAS1215BAS1215BAS1215BAS1215
BAMY326423 RBAM_031490RBAM_031490RBAM_031490RBAM_031490
BAMB398577 BAMMC406_2590BAMMC406_5072BAMMC406_5490BAMMC406_5490BAMMC406_2669
BAMB339670 BAMB_2718BAMB_4549BAMB_4937BAMB_4937BAMB_2802
BABO262698 BRUAB2_0289BRUAB2_0172BRUAB2_0172BRUAB2_0172BRUAB2_0172
ASP62977 ACIAD0132ACIAD0107ACIAD0107ACIAD0107
ASAL382245 ASA_4028ASA_0418ASA_0418ASA_0418
AMET293826 AMET_0818AMET_3750AMET_3750AMET_3750
AHYD196024 AHA_3982AHA_3864AHA_3864AHA_3864
AEHR187272 MLG_2283MLG_2283MLG_2283MLG_2283
ACAU438753 AZC_4376AZC_0823AZC_0823AZC_0823


Organism features enriched in list (features available for 186 out of the 199 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 5.702e-758112
Disease:Botulism 0.003185355
Disease:Brucellosis 0.003185355
Disease:Bubonic_plague 0.000997566
Disease:Dysentery 0.000997566
Disease:Gastroenteritis 0.00087601013
Disease:Opportunistic_infections 0.003185355
Endospores:No 5.101e-937211
Endospores:Yes 7.012e-83553
GC_Content_Range4:0-40 1.274e-1428213
GC_Content_Range4:40-60 3.633e-696224
GC_Content_Range4:60-100 0.000499362145
GC_Content_Range7:30-40 2.222e-1318166
GC_Content_Range7:50-60 6.486e-858107
GC_Content_Range7:60-70 0.000543858134
Genome_Size_Range5:0-2 6.672e-301155
Genome_Size_Range5:2-4 1.405e-834197
Genome_Size_Range5:4-6 4.193e-28117184
Genome_Size_Range5:6-10 2.847e-93447
Genome_Size_Range9:1-2 1.267e-231128
Genome_Size_Range9:2-3 2.125e-913120
Genome_Size_Range9:4-5 3.608e-136296
Genome_Size_Range9:5-6 9.460e-115588
Genome_Size_Range9:6-8 2.895e-72738
Genome_Size_Range9:8-10 0.005317479
Gram_Stain:Gram_Neg 0.0000150129333
Habitat:Host-associated 0.000017044206
Habitat:Multiple 7.804e-782178
Habitat:Specialized 0.0007404753
Habitat:Terrestrial 0.00129281831
Motility:No 3.075e-1019151
Motility:Yes 2.807e-11122267
Oxygen_Req:Anaerobic 0.002164821102
Oxygen_Req:Facultative 0.000042285201
Pathogenic_in:Human 0.000966384213
Pathogenic_in:No 0.009350561226
Shape:Coccus 0.00002581182
Shape:Rod 1.465e-17156347
Shape:Sphere 0.0054658119
Shape:Spiral 0.0000229134
Temp._range:Hyperthermophilic 0.0013422123
Temp._range:Mesophilic 0.0004226165473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 369
Effective number of orgs (counting one per cluster within 468 clusters): 294

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NHAM323097 ncbi Nitrobacter hamburgensis X140
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7789   G7678   G7546   EG11962   EG11088   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273 XCAORF_0828
XCAM314565
XCAM190485
XAXO190486 XAC3532
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1580
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296 SSU98_1178
SSUI391295 SSU05_1162
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SRUB309807
SPYO370554
SPYO370553
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084
SAUR93062 SACOL0120
SAUR93061 SAOUHSC_00096
SAUR426430 NWMN_0079
SAUR418127 SAHV_0134
SAUR367830 SAUSA300_0137
SAUR359787 SAURJH1_0126
SAUR359786 SAURJH9_0121
SAUR282459 SAS0109
SAUR282458 SAR0137
SAUR273036 SAB0074C
SAUR196620 MW0109
SAUR158879 SA0130
SAUR158878 SAV0135
SARE391037 SARE_2998
SACI56780
SACI330779
RTYP257363
RSP357808
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_3340
RPAL316057
RPAL316056 RPC_1157
RPAL316055
RPAL258594 RPA2036
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP56811
PSP312153
PSP117
PRUM264731
PPEN278197
PMUL272843
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747 PPA0740
PABY272844
OTSU357244
OCAR504832 OCAR_5301
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NHAM323097
NFAR247156 NFA24630
NEUT335283
NEUR228410
NARO279238
MXAN246197 MXAN_6161
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988 MS0538
MSTA339860
MSP409 M446_3125
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MEXT419610 MEXT_4855
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007 MAB_4644C
LXYL281090 LXX15885
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_0887
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GOXY290633
GMET269799
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_2288
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_3156
ECHA205920
ECAN269484
DSP255470
DSP216389
DPSY177439
DOLE96561
DNOD246195
DGEO319795
DETH243164
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_0301
CPEL335992
CMUR243161
CMIC443906 CMM_2906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798
CHOM360107
CGLU196627 CG2783
CFET360106
CFEL264202
CEFF196164 CE2422
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP376 BRADO1811
BSP107806
BQUI283165
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
APLE434271
APLE416269
APHA212042
APER272557
AORE350688
ANAE240017 ANA_0335
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ADEH290397
ACRY349163 ACRY_1066
ACEL351607
ABUT367737
ABOR393595
ABAC204669
AAEO224324


Organism features enriched in list (features available for 344 out of the 369 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.008301099
Arrangment:Clusters 0.00133621617
Arrangment:Pairs 9.927e-646112
Disease:Gastroenteritis 0.0073821313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00282391111
Endospores:No 3.145e-8155211
Endospores:Yes 3.980e-101053
GC_Content_Range4:0-40 4.195e-13166213
GC_Content_Range4:40-60 0.0008508115224
GC_Content_Range4:60-100 2.408e-662145
GC_Content_Range7:30-40 4.303e-11132166
GC_Content_Range7:50-60 3.421e-740107
GC_Content_Range7:60-70 5.374e-657134
Genome_Size_Range5:0-2 9.978e-37151155
Genome_Size_Range5:2-4 0.0000705137197
Genome_Size_Range5:4-6 3.164e-2947184
Genome_Size_Range5:6-10 6.135e-9947
Genome_Size_Range9:0-1 4.213e-72727
Genome_Size_Range9:1-2 3.670e-28124128
Genome_Size_Range9:2-3 1.066e-897120
Genome_Size_Range9:4-5 3.435e-122696
Genome_Size_Range9:5-6 3.328e-132188
Genome_Size_Range9:6-8 1.310e-7738
Gram_Stain:Gram_Neg 0.0000430174333
Habitat:Host-associated 0.0000255144206
Habitat:Multiple 4.124e-778178
Habitat:Specialized 0.00022464353
Habitat:Terrestrial 0.0003948931
Motility:No 1.955e-7115151
Motility:Yes 1.181e-11118267
Optimal_temp.:35-37 0.0001494113
Oxygen_Req:Anaerobic 0.000348875102
Oxygen_Req:Facultative 0.000012195201
Pathogenic_in:Human 0.0060255113213
Shape:Coccus 0.00034826282
Shape:Irregular_coccus 0.00010791717
Shape:Rod 2.551e-21151347
Shape:Sphere 0.00050091819
Shape:Spiral 2.636e-63234
Temp._range:Hyperthermophilic 0.00006722223
Temp._range:Mesophilic 0.0001801263473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLUTAMINDEG-PWY (glutamine degradation I)1911310.5226
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491090.4956
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451450.4704
GALACTITOLCAT-PWY (galactitol degradation)73670.4676
PWY-6196 (serine racemization)102820.4598
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951240.4582
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491440.4531
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491440.4531
GLUCARDEG-PWY (D-glucarate degradation I)1521040.4445
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001600.4422
GALACTCAT-PWY (D-galactonate degradation)104810.4411
GALACTARDEG-PWY (D-galactarate degradation I)1511030.4400
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121280.4380
SERDEG-PWY (L-serine degradation)3491740.4336
PWY-6374 (vibriobactin biosynthesis)77660.4331
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701480.4290
GLUCONSUPER-PWY (D-gluconate degradation)2291330.4274
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135940.4251
AST-PWY (arginine degradation II (AST pathway))120870.4249
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138950.4221
P344-PWY (acrylonitrile degradation)2101240.4145
GLYCOCAT-PWY (glycogen degradation I)2461370.4115
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651740.4013
GLYSYN-THR-PWY (glycine biosynthesis IV)2151240.4006



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7678   G7546   EG11962   EG11088   
G77890.9986570.9988110.9985530.998564
G76780.9994330.9991820.999323
G75460.9998420.999864
EG119620.999865
EG11088



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PAIRWISE BLAST SCORES:

  G7789   G7678   G7546   EG11962   EG11088   
G77890.0f0----
G7678-0.0f0---
G7546--0.0f05.4e-202.0e-22
EG11962--1.6e-180.0f05.1e-31
EG11088--2.2e-211.5e-330.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7789 (centered at G7789)
G7678 (centered at G7678)
G7546 (centered at G7546)
EG11962 (centered at EG11962)
EG11088 (centered at EG11088)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7789   G7678   G7546   EG11962   EG11088   
224/623207/623232/623219/623217/623
AAUR290340:0:Tyes-0---
AAUR290340:2:Tyes0----
AAVE397945:0:Tyes01454---
ABAU360910:0:Tyes-0-1354-
ACAU438753:0:Tyes3599-000
ACRY349163:8:Tyes-0---
AEHR187272:0:Tyes-0000
AHYD196024:0:Tyes113-000
AMET293826:0:Tyes-0286328632863
ANAE240017:0:Tyes0----
ASAL382245:5:Tyes3480-000
ASP1667:3:Tyes10642286--0
ASP232721:2:Tyes0837---
ASP62928:0:Tyes--000
ASP62977:0:Tyes-23000
BABO262698:0:Tno1070000
BAMB339670:2:Tno-0387387-
BAMB339670:3:Tno0---84
BAMB398577:2:Tno-0421421-
BAMB398577:3:Tno0---79
BAMY326423:0:Tyes-0000
BANT260799:0:Tno0-000
BANT261594:2:Tno0-000
BANT568206:2:Tyes0-000
BANT592021:2:Tno0-000
BBRO257310:0:Tyes10401920000
BCAN483179:0:Tno9820000
BCEN331271:0:Tno--000
BCEN331271:1:Tno-0---
BCEN331271:2:Tno0----
BCEN331272:1:Tyes--000
BCEN331272:2:Tyes-0---
BCEN331272:3:Tyes0----
BCER226900:1:Tyes00000
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