CANDIDATE ID: 569

CANDIDATE ID: 569

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9913300e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG12878 (zapA) (b2910)
   Products of gene:
     - EG12878-MONOMER (protein that localizes to the cytokinetic ring)
     - CPLX0-7538 (protein that localizes to the cytokinetic ring)

- EG11443 (rpiA) (b2914)
   Products of gene:
     - RIB5PISOMA-MONOMER (ribose-5-phosphate isomerase A)
     - RIB5PISOMA-CPLX (ribose-5-phosphate isomerase A)
       Reactions:
        D-ribose-5-phosphate  =  D-ribulose-5-phosphate
         In pathways
         PENTOSE-P-PWY (pentose phosphate pathway)
         PHOTOALL-PWY (PHOTOALL-PWY)
         PWY-1861 (PWY-1861)
         P185-PWY (P185-PWY)
         P124-PWY (P124-PWY)
         NONOXIPENT-PWY (pentose phosphate pathway (non-oxidative branch))
         PWY-5723 (PWY-5723)
         CALVIN-PWY (CALVIN-PWY)

- EG11323 (ygfB) (b2909)
   Products of gene:
     - EG11323-MONOMER (predicted protein)

- EG11158 (ygfA) (b2912)
   Products of gene:
     - EG11158-MONOMER (predicted ligase)

- EG10944 (serA) (b2913)
   Products of gene:
     - PGLYCDEHYDROG-MONOMER (SerA)
     - PGLYCDEHYDROG-CPLX (α-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase)
       Reactions:
        2-hydroxyglutarate + NAD+  =  2-oxoglutarate + NADH + H+
        3-phospho-D-glycerate + NAD+  =  3-phospho-hydroxypyruvate + NADH + H+
         In pathways
         SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)
         SER-GLYSYN-PWY (superpathway of serine and glycine biosynthesis I)
         SERSYN-PWY (serine biosynthesis)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 130
Effective number of orgs (counting one per cluster within 468 clusters): 77

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.5
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL15
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT85
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23965
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus5
ASP62977 ncbi Acinetobacter sp. ADP14
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ABOR393595 ncbi Alcanivorax borkumensis SK24


Names of the homologs of the genes in the group in each of these orgs
  EG12878   EG11443   EG11323   EG11158   EG10944   
YPSE349747 YPSIP31758_0858YPSIP31758_0855YPSIP31758_0859YPSIP31758_0857YPSIP31758_0856
YPSE273123 YPTB3187YPTB3190YPTB3186YPTB3188YPTB3189
YPES386656 YPDSF_0602YPDSF_0598YPDSF_0603YPDSF_0601YPDSF_0599
YPES377628 YPN_3111YPN_3114YPN_3110YPN_3112YPN_3113
YPES360102 YPA_0355YPA_0352YPA_0356YPA_0354YPA_0353
YPES349746 YPANGOLA_A3825YPANGOLA_A3822YPANGOLA_A3826YPANGOLA_A3824YPANGOLA_A3823
YPES214092 YPO0912YPO0915YPO0911YPO0913YPO0914
YPES187410 Y3299Y3302Y3298Y3300Y3301
YENT393305 YE3398YE3401YE3397YE3399YE3400
XORY360094 XOOORF_4217XOOORF_4221XOOORF_4215XOOORF_4219XOOORF_2729
XORY342109 XOO1026XOO1023XOO1028XOO1025XOO2012
XORY291331 XOO1130XOO1127XOO1132XOO1129XOO2143
XFAS405440 XFASM12_0963XFASM12_0960XFASM12_0965XFASM12_0962XFASM12_1407
XFAS183190 PD_0800PD_0797PD_0802PD_0799PD_1255
XFAS160492 XF2012XF2015XF2010XF2013XF2206
XCAM487884 XCC-B100_0922XCC-B100_0919XCC-B100_0924XCC-B100_0921XCC-B100_2112
XCAM316273 XCAORF_3603XCAORF_3606XCAORF_3601XCAORF_3604XCAORF_2077
XCAM314565 XC_0902XC_0899XC_0904XC_0901XC_2364
XCAM190485 XCC3262XCC3265XCC3260XCC3263XCC1825
XAXO190486 XAC3408XAC3411XAC3406XAC3409XAC1844
VVUL216895 VV1_1549VV1_1547VV1_1551VV1_1548VV1_1546
VVUL196600 VV2848VV2850VV2847VV2849VV2851
VPAR223926 VP2590VP2592VP2588VP2591VP2593
VFIS312309 VF2103VF2105VF2102VF2104VF2106
VCHO345073 VC0395_A2054VC0395_A2056VC0395_A2053VC0395_A2055VC0395_A2057
VCHO VC2478VC2480VC2476VC2479VC2481
TTUR377629 TERTU_0398TERTU_0392TERTU_0401TERTU_0397TERTU_0393
TCRU317025 TCR_1568TCR_1560TCR_1562TCR_0627
STYP99287 STM3060STM3063STM3059STM3061STM3062
SSP94122 SHEWANA3_3505SHEWANA3_0978SHEWANA3_3504SHEWANA3_3506SHEWANA3_3416
SSON300269 SSO_3063SSO_3066SSO_3062SSO_3064SSO_3065
SSED425104 SSED_3679SSED_0898SSED_3678SSED_3686SSED_3947
SPRO399741 SPRO_3921SPRO_3924SPRO_3920SPRO_3922SPRO_3923
SPEA398579 SPEA_3308SPEA_0816SPEA_3306SPEA_3311SPEA_0631
SONE211586 SO_0775SO_1150SO_0776SO_0774SO_0862
SLOI323850 SHEW_3068SHEW_0825SHEW_3067SHEW_3069SHEW_3196
SHIGELLA YGFERPIAYGFBYGFASERA
SHAL458817 SHAL_3379SHAL_0870SHAL_3378SHAL_3386SHAL_0723
SGLO343509 SG2007SG2010SG2006SG2008SG2009
SFLE373384 SFV_2958SFV_2961SFV_2957SFV_2959SFV_2960
SFLE198214 AAN44380.1AAN44383.1AAN44379.1AAN44381.1AAN44382.1
SENT454169 SEHA_C3293SEHA_C3298SEHA_C3292SEHA_C3295SEHA_C3297
SENT321314 SCH_3001SCH_3004SCH_3000SCH_3002SCH_3003
SENT295319 SPA2928SPA2934SPA2927SPA2931SPA2933
SENT220341 STY3216STY3219STY3215STY3217STY3218
SENT209261 T2978T2981T2977T2979T2980
SDYS300267 SDY_3171SDY_3168SDY_3172SDY_3170SDY_3169
SDEN318161 SDEN_0829SDEN_1092SDEN_0830SDEN_0828SDEN_3097
SDEG203122 SDE_3516SDE_3387SDE_3517SDE_3388
SBOY300268 SBO_3082SBO_3079SBO_3083SBO_3081SBO_3080
SBAL402882 SHEW185_3681SHEW185_3389SHEW185_3680SHEW185_3682SHEW185_0838
SBAL399599 SBAL195_3805SBAL195_3514SBAL195_3804SBAL195_3806SBAL195_0873
RPAL316058 RPB_4464RPB_3386RPB_4289RPB_1315
RPAL316055 RPE_4731RPE_1987RPE_4775RPE_4160
PSYR223283 PSPTO_5289PSPTO_5224PSPTO_5227PSPTO_5294
PSYR205918 PSYR_4847PSYR_0320PSYR_0317PSYR_4852
PSTU379731 PST_0404PST_4071PST_4073PST_0398
PSP56811 PSYCPRWF_1880PSYCPRWF_0779PSYCPRWF_1878PSYCPRWF_1976PSYCPRWF_0569
PPUT76869 PPUTGB1_5263PPUTGB1_5203PPUTGB1_5264PPUTGB1_5208
PPUT351746 PPUT_5110PPUT_5057PPUT_5108PPUT_5111PPUT_5062
PPUT160488 PP_5202PP_5150PP_5201PP_5203PP_5155
PPRO298386 PBPRA3120PBPRA3122PBPRA3119PBPRA3121PBPRA3124
PMUL272843 PM1722PM1670PM1723PM1721PM1671
PMEN399739 PMEN_0322PMEN_4223PMEN_0324PMEN_0321PMEN_4232
PLUM243265 PLU3603PLU3606PLU3602PLU3604PLU3605
PING357804 PING_0604PING_0601PING_0605PING_0602PING_0600
PHAL326442 PSHAA0295PSHAA0667PSHAA0561PSHAA0668PSHAA0666
PFLU220664 PFL_5970PFL_5906PFL_5969PFL_5971PFL_5911
PFLU216595 PFLU5883PFLU5824PFLU5881PFLU5885PFLU5829
PFLU205922 PFL_5437PFL_5382PFL_5438PFL_5387
PENT384676 PSEEN5318PSEEN5243PSEEN5319PSEEN5248
PCRY335284 PCRYO_1462PCRYO_2051PCRYO_1895PCRYO_0410
PATL342610 PATL_3508PATL_3503PATL_3507PATL_1156
PARC259536 PSYC_0956PSYC_1769PSYC_1658PSYC_0369
PAER208964 PA5227PA0330PA5225PA5228PA0316
PAER208963 PA14_69030PA14_04310PA14_69010PA14_69040PA14_04110
MSUC221988 MS0477MS1744MS0478MS0476MS1743
MSP400668 MMWYL1_1130MMWYL1_4136MMWYL1_3758MMWYL1_1129MMWYL1_4310
MCAP243233 MCA_2772MCA_0355MCA_2771MCA_2773
MAQU351348 MAQU_3434MAQU_3437MAQU_3428MAQU_3435MAQU_2819
KPNE272620 GKPORF_B2700GKPORF_B2704GKPORF_B2699GKPORF_B2701GKPORF_B2702
ILOI283942 IL2100IL2103IL2099IL2102IL2104
HSOM228400 HSM_1095HSM_2008HSM_1094HSM_1096HSM_2007
HSOM205914 HS_0684HS_0123HS_0683HS_0685HS_0122
HINF71421 HI_0857HI_0464HI_0817HI_0858HI_0465
HINF374930 CGSHIEE_07755CGSHIEE_00670CGSHIEE_07975CGSHIEE_07750CGSHIEE_00665
HINF281310 NTHI1025NTHI0595NTHI0981NTHI1027NTHI0596
HHAL349124 HHAL_1182HHAL_1176HHAL_1184HHAL_1181HHAL_0569
HCHE349521 HCH_01065HCH_01062HCH_01069HCH_01064HCH_01646
FTUL458234 FTA_0777FTA_0765FTA_0764FTA_0754
FTUL418136 FTW_1255FTW_0727FTW_0726FTW_0716
FTUL401614 FTN_1185FTN_1238FTN_1239FTN_1249
FTUL393115 FTF1208FTF1219CFTF1220FTF1230
FTUL393011 FTH_0738FTH_0727FTH_0726FTH_0716
FTUL351581 FTL_0736FTL_0725FTL_0724FTL_0714
FRANT RPIAFT.1220CFT.1221SERA
FPHI484022 FPHI_0102FPHI_1442FPHI_1441FPHI_1431
ESP42895 ENT638_3329ENT638_3333ENT638_3328ENT638_3331ENT638_3332
EFER585054 EFER_2847EFER_2851EFER_2846EFER_2849EFER_2850
ECOO157 YGFERPIAYGFBYGFASERA
ECOL83334 ECS3781ECS3785ECS3780ECS3782ECS3784
ECOL585397 ECED1_3369ECED1_3372ECED1_3368ECED1_3370ECED1_3371
ECOL585057 ECIAI39_3326ECIAI39_3329ECIAI39_3325ECIAI39_3327ECIAI39_3328
ECOL585056 ECUMN_3252ECUMN_3255ECUMN_3251ECUMN_3253ECUMN_3254
ECOL585055 EC55989_3198EC55989_3202EC55989_3197EC55989_3199EC55989_3200
ECOL585035 ECS88_3190ECS88_3193ECS88_3189ECS88_3191ECS88_3192
ECOL585034 ECIAI1_3029ECIAI1_3034ECIAI1_3028ECIAI1_3031ECIAI1_3032
ECOL481805 ECOLC_0799ECOLC_0796ECOLC_0800ECOLC_0798ECOLC_0797
ECOL469008 ECBD_0827ECBD_0824ECBD_0828ECBD_0826ECBD_0825
ECOL439855 ECSMS35_3044ECSMS35_3047ECSMS35_3043ECSMS35_3045ECSMS35_3046
ECOL413997 ECB_02742ECB_02745ECB_02741ECB_02743ECB_02744
ECOL409438 ECSE_3173ECSE_3176ECSE_3172ECSE_3174ECSE_3175
ECOL405955 APECO1_3618APECO1_3615APECO1_3619APECO1_3617APECO1_3616
ECOL364106 UTI89_C3297UTI89_C3300UTI89_C3295UTI89_C3298UTI89_C3299
ECOL362663 ECP_2903ECP_2906ECP_2902ECP_2904ECP_2905
ECOL331111 ECE24377A_3238ECE24377A_3241ECE24377A_3237ECE24377A_3239ECE24377A_3240
ECOL316407 ECK2905:JW2878:B2910ECK2910:JW5475:B2914ECK2904:JW5473:B2909ECK2907:JW2879:B2912ECK2909:JW2880:B2913
ECOL199310 C3492C3495C3491C3493C3494
ECAR218491 ECA0461ECA3906ECA0460ECA0462ECA3905
DNOD246195 DNO_0713DNO_0522DNO_0717DNO_1201
CSAL290398 CSAL_0022CSAL_0019CSAL_0021CSAL_0096
CPSY167879 CPS_1268CPS_1545CPS_1270CPS_3648CPS_1544
CJAP155077 CJA_0291CJA_0238CJA_0293CJA_0289CJA_0232
ASP62977 ACIAD1358ACIAD1125ACIAD1116ACIAD3302
ASAL382245 ASA_2637ASA_1642ASA_2636ASA_1643ASA_1641
APLE434271 APJL_0111APJL_1475APJL_0112APJL_0110APJL_1474
APLE416269 APL_0110APL_1453APL_0111APL_0109APL_1452
AHYD196024 AHA_1714AHA_2728AHA_1715AHA_2727AHA_2731
AEHR187272 MLG_2539MLG_0086MLG_2541MLG_2538MLG_0925
ABOR393595 ABO_2606ABO_2601ABO_2604ABO_0068


Organism features enriched in list (features available for 123 out of the 130 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 6.961e-6592
Arrangment:Pairs 0.006140733112
Arrangment:Singles 0.000514676286
Disease:Bubonic_plague 0.000080066
Disease:Dysentery 0.000080066
Disease:Gastroenteritis 0.00001921013
Disease:Rice_bacterial_blight_disease 0.009210533
Disease:Tularemia 0.000391755
Disease:chronic_bronchitis 0.009210533
Endospores:No 0.000067027211
GC_Content_Range4:0-40 2.965e-1214213
GC_Content_Range4:40-60 5.541e-1585224
GC_Content_Range7:30-40 3.331e-714166
GC_Content_Range7:40-50 0.000091840117
GC_Content_Range7:50-60 2.215e-845107
Genome_Size_Range5:0-2 5.703e-811155
Genome_Size_Range5:2-4 8.152e-720197
Genome_Size_Range5:4-6 4.424e-1981184
Genome_Size_Range9:1-2 0.000017211128
Genome_Size_Range9:2-3 0.000578913120
Genome_Size_Range9:3-4 0.0017737777
Genome_Size_Range9:4-5 8.413e-63796
Genome_Size_Range9:5-6 2.617e-114488
Gram_Stain:Gram_Neg 3.201e-27118333
Habitat:Multiple 0.003905949178
Habitat:Specialized 0.0040442453
Motility:No 0.000021915151
Motility:Yes 9.152e-882267
Optimal_temp.:25-30 0.00163361019
Oxygen_Req:Anaerobic 1.390e-83102
Oxygen_Req:Facultative 7.437e-1275201
Pathogenic_in:Human 0.009060655213
Pathogenic_in:No 0.000031829226
Pathogenic_in:Plant 0.00012931015
Pathogenic_in:Rice 0.009210533
Shape:Coccus 2.288e-7282
Shape:Rod 5.297e-17111347
Temp._range:Psychrophilic 0.000023589
Temp._range:Thermophilic 0.0018993135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 192
Effective number of orgs (counting one per cluster within 468 clusters): 153

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO1
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391296 ncbi Streptococcus suis 98HAH331
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMAR399550 ncbi Staphylothermus marinus F11
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP296591 ncbi Polaromonas sp. JS6661
PRUM264731 ncbi Prevotella ruminicola 231
PMOB403833 ncbi Petrotoga mobilis SJ950
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 171
PGIN242619 ncbi Porphyromonas gingivalis W831
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MLEP272631 ncbi Mycobacterium leprae TN1
MKAN190192 ncbi Methanopyrus kandleri AV191
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MART243272 ncbi Mycoplasma arthritidis 158L3-10
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC1
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse1
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451


Names of the homologs of the genes in the group in each of these orgs
  EG12878   EG11443   EG11323   EG11158   EG10944   
WSUC273121 WS1313
WPIP955
WPIP80849 WB_0397
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN0717
TTEN273068 TTE2613
TSP28240 TRQ2_1428
TSP1755 TETH514_2306
TPSE340099 TETH39_0145
TPET390874 TPET_1382
TPEN368408
TPAL243276
TMAR243274
TLET416591 TLET_1768
TDEN326298 TMDEN_0875
TDEN243275 TDE_1641
TACI273075 TA0878
STRO369723 STROP_1236
STOK273063
SSUI391296 SSU98_1458
SSP387093 SUN_0551
SSOL273057
SPYO370554 MGAS10750_SPY0787
SPYO370553 MGAS2096_SPY0767
SPYO370552 MGAS10270_SPY0753
SPYO370551 MGAS9429_SPY0751
SPYO319701 M28_SPY0675
SPYO293653 M5005_SPY0695
SPYO286636 M6_SPY0712
SPYO198466 SPYM3_0608
SPYO193567 SPS1245
SPYO186103 SPYM18_0950
SPYO160490 SPY0889
SMAR399550 SMAR_0554
SGOR29390 SGO_1265
SFUM335543 SFUM_3649
SERY405948 SACE_6155
SARE391037 SARE_1126
SACI56780 SYN_00123
SACI330779
RTYP257363
RSOL267608 RSC1232
RSAL288705 RSAL33209_1046
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO0565
PSP312153 PNUC_1264
PSP296591 BPRO_2857
PRUM264731 GFRORF0199
PMOB403833
PLUT319225 PLUT_1015
PISL384616 PISL_1200
PINT246198 PIN_A1404
PGIN242619 PG_1854
PDIS435591 BDI_0204
PAST100379
PARS340102 PARS_0187
OTSU357244
NSP387092 NIS_0664
NSEN222891 NSE_0133
MTUB419947 MRA_3025
MTUB336982 TBFG_13011
MTBRV RV2996C
MTBCDC MT3074
MSYN262723
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0503
MMOB267748
MLEP272631 ML1692
MKAN190192 MK0297
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311 MFL250
MCAP340047 MCAP_0467
MBOV410289 BCG_3017C
MBOV233413 MB3020C
MART243272
LLAC272623 L0045
LLAC272622 LACR_2538
LINT363253 LI0770
LINT267671 LIC_11992
LINT189518 LA1911
LINN272626 LIN0974
LDEL390333 LDB0531
LDEL321956 LBUL_0472
LCAS321967 LSEI_2675
LBRE387344 LVIS_0574
LBOR355277 LBJ_1496
LBOR355276 LBL_1720
LBIF456481 LEPBI_I1899
LBIF355278 LBF_1844
IHOS453591 IGNI_0383
HPYL85963 JHP0984
HPYL357544 HPAG1_0995
HPY HP0397
HHEP235279 HH_0135
HBUT415426
HAUR316274 HAUR_1084
HACI382638 HAC_0455
FSUC59374 FSU0417
FNUC190304
FNOD381764 FNOD_0103
FMAG334413 FMG_1186
FJOH376686
ERUM302409 ERGA_CDS_05030
ERUM254945 ERWE_CDS_05120
ECHA205920 ECH_0541
ECAN269484 ECAJ_0492
DVUL882 DVU_0366
DSP255470 CBDBA580
DSP216389 DEHABAV1_0574
DPSY177439 DP0646
DHAF138119 DSY3972
DETH243164 DET_0599
DDES207559
CTRA471473 CTLON_0460
CTRA471472 CTL0465
CTEP194439 CT_1048
CSUL444179
CPRO264201 PC1175
CPNE182082
CPNE138677
CPNE115713 CPN0141
CPNE115711 CP_0631
CPHY357809 CPHY_2601
CPER289380 CPR_2319
CPER195103 CPF_2633
CPER195102 CPE2324
CPEL335992
CMUR243161 TC_0485
CMAQ397948 CMAQ_0742
CKOR374847 KCR_0002
CJEJ407148 C8J_0828
CJEJ360109 JJD26997_0922
CJEJ354242 CJJ81176_0900
CJEJ195099 CJE_0970
CJEJ192222 CJ0891C
CHOM360107
CGLU196627 CG1451
CFET360106
CFEL264202 CF0371
CEFF196164 CE1379
CDIP257309 DIP1104
CDIF272563 CD3456
CCUR360105 CCV52592_0512
CCON360104 CCC13826_1569
CCAV227941 CCA_00632
CACE272562 CAC1090
CABO218497 CAB606
BXEN266265
BTUR314724
BTHE226186 BT_4258
BSP107806 BU411
BQUI283165 BQ06820
BHER314723
BHEN283166 BH06410
BGAR290434
BFRA295405 BF0962
BFRA272559 BF0880
BCER315749 BCER98_2993
BBUR224326
BBAC360095 BARBAKC583_0602
BBAC264462 BD2892
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042 APH_0693
APER272557
AORE350688 CLOS_2263
ANAE240017 ANA_1920
AMAR234826 AM606
ALAI441768
ABUT367737
ABAC204669 ACID345_0115


Organism features enriched in list (features available for 180 out of the 192 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 5.255e-616112
Disease:Leptospirosis 0.008878244
Disease:Pharyngitis 0.000074088
Disease:Wide_range_of_infections 1.957e-61111
Disease:bronchitis_and_pneumonitis 0.000074088
Endospores:No 2.312e-997211
GC_Content_Range4:0-40 3.282e-13105213
GC_Content_Range4:60-100 3.392e-1115145
GC_Content_Range7:0-30 1.969e-73147
GC_Content_Range7:30-40 4.041e-674166
GC_Content_Range7:50-60 0.000145718107
GC_Content_Range7:60-70 3.456e-1014134
Genome_Size_Range5:0-2 1.152e-28104155
Genome_Size_Range5:2-4 0.006053449197
Genome_Size_Range5:4-6 1.263e-1222184
Genome_Size_Range5:6-10 0.0005500547
Genome_Size_Range9:0-1 3.550e-82227
Genome_Size_Range9:1-2 5.341e-1982128
Genome_Size_Range9:4-5 0.00004071496
Genome_Size_Range9:5-6 1.510e-7888
Genome_Size_Range9:6-8 0.0004466338
Habitat:Aquatic 4.610e-61191
Habitat:Host-associated 3.569e-1097206
Habitat:Multiple 0.000143137178
Habitat:Specialized 0.00172242653
Motility:No 0.000345063151
Motility:Yes 8.921e-659267
Optimal_temp.:30-37 0.0096655118
Optimal_temp.:37 6.878e-652106
Oxygen_Req:Anaerobic 0.000156547102
Oxygen_Req:Facultative 0.000022141201
Oxygen_Req:Microaerophilic 0.00131191218
Pathogenic_in:Human 0.000814882213
Pathogenic_in:No 0.001040054226
Salinity:Non-halophilic 0.000936646106
Shape:Rod 0.000010784347
Shape:Sphere 0.00001421519
Shape:Spiral 1.662e-112934
Temp._range:Hyperthermophilic 0.00177871423



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461210.5630
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181120.5508
AST-PWY (arginine degradation II (AST pathway))120800.5505
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951000.5052
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901240.5028
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911240.5010
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961250.5002
PWY-5148 (acyl-CoA hydrolysis)2271080.4977
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001250.4933
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4880
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251060.4856
PWY-5918 (heme biosynthesis I)2721160.4718
PWY-1269 (CMP-KDO biosynthesis I)3251270.4680
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94620.4678
PWY-4041 (γ-glutamyl cycle)2791170.4669
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861180.4623
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96620.4592
ECASYN-PWY (enterobacterial common antigen biosynthesis)191930.4553
PWY-5386 (methylglyoxal degradation I)3051210.4532
GALACTITOLCAT-PWY (galactitol degradation)73520.4516
PWY0-1182 (trehalose degradation II (trehalase))70500.4427
KDOSYN-PWY (KDO transfer to lipid IVA I)180880.4396
PWY-46 (putrescine biosynthesis III)138750.4395
GLUCONSUPER-PWY (D-gluconate degradation)2291010.4360
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81540.4357
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)179870.4334
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481270.4326
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176860.4323
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391250.4304
PWY-5913 (TCA cycle variation IV)3011160.4205
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491040.4197
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491040.4197
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291210.4142
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4060



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11443   EG11323   EG11158   EG10944   
EG128780.9990720.9996190.999650.998739
EG114430.9990520.9989360.999151
EG113230.9995620.998697
EG111580.998852
EG10944



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PAIRWISE BLAST SCORES:

  EG12878   EG11443   EG11323   EG11158   EG10944   
EG128780.0f0----
EG11443-0.0f0---
EG11323--0.0f0--
EG11158---0.0f0-
EG10944----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11158 EG11323 EG12878 (centered at EG12878)
EG10944 EG11443 (centered at EG11443)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12878   EG11443   EG11323   EG11158   EG10944   
136/623406/623130/623399/623402/623
AAEO224324:0:Tyes---0125
AAUR290340:2:Tyes---3380
AAVE397945:0:Tyes0907--2074
ABAC204669:0:Tyes----0
ABAU360910:0:Tyes-2083-02934
ABOR393595:0:Tyes-2580257525780
ACAU438753:0:Tyes-1876-02550
ACEL351607:0:Tyes---0543
ACRY349163:8:Tyes-0-12331389
ADEH290397:0:Tyes---0219
AEHR187272:0:Tyes2436024382435836
AFER243159:0:Tyes-1436-01178
AFUL224325:0:Tyes-129--0
AHYD196024:0:Tyes09871986990
AMAR234826:0:Tyes---0-
AMAR329726:9:Tyes-1127-32640
AMET293826:0:Tyes---0140
ANAE240017:0:Tyes---0-
AORE350688:0:Tyes---0-
APHA212042:0:Tyes---0-
APLE416269:0:Tyes11362201361
APLE434271:0:Tno11355201354
ASAL382245:5:Tyes960195920
ASP1667:3:Tyes---3350
ASP232721:2:Tyes-1216--0
ASP62928:0:Tyes02237--2510
ASP62977:0:Tyes-238902027
ASP76114:2:Tyes-0--3403
AVAR240292:3:Tyes-2399-01664
BABO262698:0:Tno----0
BABO262698:1:Tno-0-679-
BAMB339670:3:Tno-0-1663-
BAMB398577:3:Tno-0-1492-
BAMY326423:0:Tyes---1990
BANT260799:0:Tno-0-1554-
BANT261594:2:Tno-0-1561-
BANT568206:2:Tyes-0-2643-
BANT592021:2:Tno-0-1637-
BAPH198804:0:Tyes-1-0-
BAPH372461:0:Tyes01---
BBAC264462:0:Tyes----0
BBAC360095:0:Tyes-0---
BBRO257310:0:Tyes-3230-04314
BCAN483179:0:Tno----0
BCAN483179:1:Tno-0-709-
BCEN331271:2:Tno-0-1359-
BCEN331272:3:Tyes-0-1482-
BCER226900:1:Tyes-0-1428-
BCER288681:0:Tno-0-1486-
BCER315749:1:Tyes---0-
BCER405917:1:Tyes-0-1445-
BCER572264:1:Tno-0-1479-
BCIC186490:0:Tyes-0-1-
BCLA66692:0:Tyes-1642-0121
BFRA272559:1:Tyes---0-
BFRA295405:0:Tno---0-
BHAL272558:0:Tyes---0185
BHEN283166:0:Tyes-0---
BJAP224911:0:Fyes-2234-06473
BLIC279010:0:Tyes---2100
BLON206672:0:Tyes-316--0
BMAL243160:1:Tno-0-1856-
BMAL320388:1:Tno-0-1209-
BMAL320389:1:Tyes-0-2300-
BMEL224914:0:Tno----0
BMEL224914:1:Tno-679-0-
BMEL359391:0:Tno----0
BMEL359391:1:Tno---0-
BOVI236:1:Tyes-0-608571
BPAR257311:0:Tno-1426-03640
BPER257313:0:Tyes-1960-26260
BPET94624:0:Tyes-1492-43250
BPSE272560:1:Tyes-1605-0994
BPSE320372:1:Tno-1640-01078
BPSE320373:1:Tno-1499-01047
BPUM315750:0:Tyes---1800
BQUI283165:0:Tyes-0---
BSP107806:2:Tyes-0---
BSP36773:2:Tyes-0-1716-
BSP376:0:Tyes-3407-0594
BSUB:0:Tyes---1870
BSUI204722:0:Tyes----0
BSUI204722:1:Tyes-0-690-
BSUI470137:0:Tno---7000
BSUI470137:1:Tno-0---
BTHA271848:1:Tno-2248-02609
BTHE226186:0:Tyes---0-
BTHU281309:1:Tno-0-1445-
BTHU412694:1:Tno-0-1288-
BTRI382640:1:Tyes-0-906-
BVIE269482:7:Tyes-0-1591-
BWEI315730:4:Tyes-0-1482-
CABO218497:0:Tyes-0---
CACE272562:1:Tyes---0-
CAULO:0:Tyes-0-957927
CBEI290402:0:Tyes-2048-04556
CBLO203907:0:Tyes20-1-
CBLO291272:0:Tno20-1-
CBOT36826:1:Tno---14580
CBOT441770:0:Tyes---13570
CBOT441771:0:Tno---12760
CBOT441772:1:Tno---14270
CBOT498213:1:Tno---14620
CBOT508765:1:Tyes---03023
CBOT515621:2:Tyes---16380
CBOT536232:0:Tno---16360
CBUR227377:1:Tyes380-37-
CBUR360115:1:Tno01942-1-
CBUR434922:2:Tno18060-1807-
CCAV227941:1:Tyes-0---
CCHL340177:0:Tyes---0482
CCON360104:2:Tyes----0
CCUR360105:0:Tyes----0
CDES477974:0:Tyes---19730
CDIF272563:1:Tyes---0-
CDIP257309:0:Tyes----0
CEFF196164:0:Fyes----0
CFEL264202:1:Tyes-0---
CGLU196627:0:Tyes----0
CHUT269798:0:Tyes---0299
CHYD246194:0:Tyes---01898
CJAP155077:0:Tyes59661570
CJEI306537:0:Tyes---2420
CJEJ192222:0:Tyes----0
CJEJ195099:0:Tno----0
CJEJ354242:2:Tyes----0
CJEJ360109:0:Tyes----0
CJEJ407148:0:Tno----0
CKLU431943:1:Tyes---02285
CKOR374847:0:Tyes-0---
CMAQ397948:0:Tyes-0---
CMET456442:0:Tyes-0-761266
CMIC31964:2:Tyes---01332
CMIC443906:2:Tyes---13810
CMUR243161:1:Tyes-0---
CNOV386415:0:Tyes---01456
CPER195102:1:Tyes---0-
CPER195103:0:Tno---0-
CPER289380:3:Tyes---0-
CPHY357809:0:Tyes---0-
CPNE115711:1:Tyes-0---
CPNE115713:0:Tno-0---
CPRO264201:0:Fyes-0---
CPSY167879:0:Tyes027622306275
CRUT413404:0:Tyes-0-691-
CSAL290398:0:Tyes30-276
CSP501479:7:Fyes----0
CSP501479:8:Fyes-0-42-
CSP78:2:Tyes-2796-03730
CTEP194439:0:Tyes---0-
CTET212717:0:Tyes---2990
CTRA471472:0:Tyes-0---
CTRA471473:0:Tno-0---
CVES412965:0:Tyes-0-626-
CVIO243365:0:Tyes0783-1-
DARO159087:0:Tyes4670---
DETH243164:0:Tyes----0
DGEO319795:1:Tyes-549--0
DHAF138119:0:Tyes---0-
DNOD246195:0:Tyes1910193654-
DOLE96561:0:Tyes---0110
DPSY177439:2:Tyes---0-
DRAD243230:3:Tyes-0--440
DRED349161:0:Tyes---29010
DSHI398580:5:Tyes-0-31582
DSP216389:0:Tyes----0
DSP255470:0:Tno----0
DVUL882:1:Tyes---0-
ECAN269484:0:Tyes---0-
ECAR218491:0:Tyes13492033491
ECHA205920:0:Tyes---0-
ECOL199310:0:Tno14023
ECOL316407:0:Tno16035
ECOL331111:6:Tno14023
ECOL362663:0:Tno14023
ECOL364106:1:Tno25034
ECOL405955:2:Tyes14023
ECOL409438:6:Tyes14023
ECOL413997:0:Tno14023
ECOL439855:4:Tno14023
ECOL469008:0:Tno30421
ECOL481805:0:Tno40521
ECOL585034:0:Tno18047
ECOL585035:0:Tno17036
ECOL585055:0:Tno17036
ECOL585056:2:Tno17036
ECOL585057:0:Tno16035
ECOL585397:0:Tno17036
ECOL83334:0:Tno16035
ECOLI:0:Tno17036
ECOO157:0:Tno16035
EFAE226185:3:Tyes-0-2433-
EFER585054:1:Tyes18047
ELIT314225:0:Tyes---6580
ERUM254945:0:Tyes---0-
ERUM302409:0:Tno---0-
ESP42895:1:Tyes14023
FALN326424:0:Tyes---5330
FMAG334413:1:Tyes---0-
FNOD381764:0:Tyes----0
FPHI484022:1:Tyes-0138513841374
FRANT:0:Tno-0111222
FSP106370:0:Tyes---4070
FSP1855:0:Tyes---0411
FSUC59374:0:Tyes-0---
FTUL351581:0:Tno-1911100
FTUL393011:0:Tno-2011100
FTUL393115:0:Tyes-0101121
FTUL401614:0:Tyes-0535464
FTUL418136:0:Tno-44911100
FTUL458234:0:Tno-2011100
GBET391165:0:Tyes-0-236-
GFOR411154:0:Tyes---24430
GKAU235909:1:Tyes---2020
GMET269799:1:Tyes---01213
GOXY290633:5:Tyes-1629-1580
GSUL243231:0:Tyes---061
GTHE420246:1:Tyes---2010
GURA351605:0:Tyes---0632
GVIO251221:0:Tyes-0-7362133
HACI382638:1:Tyes----0
HARS204773:0:Tyes-0-1759-
HAUR316274:2:Tyes----0
HCHE349521:0:Tyes3072561
HDUC233412:0:Tyes7160717--
HHAL349124:0:Tyes6286226306270
HHEP235279:0:Tyes----0
HINF281310:0:Tyes40403654051
HINF374930:0:Tyes12391127912380
HINF71421:0:Tno39003503911
HMAR272569:8:Tyes-0--102
HMOD498761:0:Tyes---6120
HMUK485914:1:Tyes-342--0
HNEP81032:0:Tyes-0-18642376
HPY:0:Tno----0
HPYL357544:1:Tyes----0
HPYL85963:0:Tno----0
HSAL478009:4:Tyes-0--129
HSOM205914:1:Tyes57015695710
HSOM228400:0:Tno191502914
HSP64091:2:Tno-0--124
HWAL362976:1:Tyes-2554--0
IHOS453591:0:Tyes----0
ILOI283942:0:Tyes15046
JSP290400:1:Tyes-2947-31600
JSP375286:0:Tyes-0-890-
KPNE272620:2:Tyes15023
KRAD266940:2:Fyes---23720
LACI272621:0:Tyes-0-864-
LBIF355278:2:Tyes----0
LBIF456481:2:Tno----0
LBOR355276:1:Tyes----0
LBOR355277:1:Tno----0
LBRE387344:2:Tyes-0---
LCAS321967:1:Tyes-0---
LCHO395495:0:Tyes-951-0-
LDEL321956:0:Tyes-0---
LDEL390333:0:Tyes-0---
LGAS324831:0:Tyes-0-793-
LHEL405566:0:Tyes-0-731-
LINN272626:1:Tno-0---
LINT189518:1:Tyes----0
LINT267671:1:Tno----0
LINT363253:3:Tyes---0-
LJOH257314:0:Tyes-0-778-
LLAC272622:5:Tyes-0---
LLAC272623:0:Tyes-0---
LMES203120:1:Tyes-4-0-
LMON169963:0:Tno-0-362-
LMON265669:0:Tyes-0-355-
LPLA220668:0:Tyes-0-828-
LPNE272624:0:Tno-180515-
LPNE297245:1:Fno-150551-
LPNE297246:1:Fyes-180557-
LPNE400673:0:Tno-1502556-
LREU557436:0:Tyes-0-945-
LSAK314315:0:Tyes-364-0-
LSPH444177:1:Tyes---31260
LWEL386043:0:Tyes-0-393-
LXYL281090:0:Tyes---0619
MABS561007:1:Tyes---02232
MACE188937:0:Tyes-1056--0
MAEO419665:0:Tyes-168--0
MAER449447:0:Tyes-0-56244857
MAQU351348:2:Tyes6116146056120
MAVI243243:0:Tyes---02712
MBAR269797:1:Tyes-1688--0
MBOV233413:0:Tno----0
MBOV410289:0:Tno----0
MBUR259564:0:Tyes-0--1537
MCAP243233:0:Tyes2285022842286-
MCAP340047:0:Tyes---0-
MEXT419610:0:Tyes-2098-21630
MFLA265072:0:Tyes05--597
MFLO265311:0:Tyes---0-
MGIL350054:3:Tyes---02357
MHUN323259:0:Tyes-0-2472462
MJAN243232:2:Tyes-602--0
MKAN190192:0:Tyes----0
MLAB410358:0:Tyes-0-8471176
MLEP272631:0:Tyes----0
MLOT266835:2:Tyes-134-02742
MMAG342108:0:Tyes---310
MMAR267377:0:Tyes-0--408
MMAR368407:0:Tyes-0-177479
MMAR394221:0:Tyes-819-22890
MMAR402880:1:Tyes-0--1402
MMAR426368:0:Tyes-0--408
MMAR444158:0:Tyes-411--0
MMAZ192952:0:Tyes-0--1724
MMYC272632:0:Tyes---0-
MPET420662:1:Tyes-0-1156-
MSME246196:0:Tyes---30630
MSP164756:1:Tno---24040
MSP164757:0:Tno---27870
MSP189918:2:Tyes---24440
MSP266779:3:Tyes-0-17401705
MSP400668:0:Tyes13059267203245
MSP409:2:Tyes-1819-0841
MSTA339860:0:Tyes-0--147
MSUC221988:0:Tyes21313301312
MTBCDC:0:Tno----0
MTBRV:0:Tno----0
MTHE187420:0:Tyes-0--361
MTHE264732:0:Tyes---20720
MTHE349307:0:Tyes-0--846
MTUB336982:0:Tno----0
MTUB419947:0:Tyes----0
MVAN350058:0:Tyes---26950
MXAN246197:0:Tyes-2423-03268
NARO279238:0:Tyes---0728
NEUR228410:0:Tyes1520---
NEUT335283:2:Tyes-0-467-
NFAR247156:2:Tyes---7420
NGON242231:0:Tyes9750-930-
NHAM323097:2:Tyes-338-23300
NMEN122586:0:Tno5290-568-
NMEN122587:0:Tyes461292-0-
NMEN272831:0:Tno5290-566-
NMEN374833:0:Tno01269-1910-
NMUL323848:3:Tyes1890---
NOCE323261:1:Tyes0932--
NPHA348780:2:Tyes-263--0
NSEN222891:0:Tyes---0-
NSP103690:6:Tyes-0-39771006
NSP35761:1:Tyes---03167
NSP387092:0:Tyes----0
NWIN323098:0:Tyes-0-15291765
OANT439375:4:Tyes----0
OANT439375:5:Tyes-926-0-
OCAR504832:0:Tyes-0-775625
OIHE221109:0:Tyes-697-0714
PABY272844:0:Tyes-12--0
PACN267747:0:Tyes---0790
PAER178306:0:Tyes-0--1686
PAER208963:0:Tyes527914527752800
PAER208964:0:Tno497714497549780
PARC259536:0:Tyes-586140812970
PARS340102:0:Tyes-0---
PATL342610:0:Tyes-2376237123750
PCAR338963:0:Tyes---0766
PCRY335284:1:Tyes-1048163514790
PDIS435591:0:Tyes---0-
PENT384676:0:Tyes700-715
PFLU205922:0:Tyes550-565
PFLU216595:1:Tyes57055585
PFLU220664:0:Tyes64063655
PFUR186497:0:Tyes-0--141
PGIN242619:0:Tyes---0-
PHAL326442:1:Tyes0372268373371
PHOR70601:0:Tyes-0--12
PING357804:0:Tyes41520
PINT246198:1:Tyes---0-
PISL384616:0:Tyes-0---
PLUM243265:0:Fyes14023
PLUT319225:0:Tyes---0-
PMAR146891:0:Tyes-138--0
PMAR167539:0:Tyes-209--0
PMAR167540:0:Tyes-136--0
PMAR167542:0:Tyes-157--0
PMAR167546:0:Tyes-143--0
PMAR167555:0:Tyes-109--0
PMAR59920:0:Tno-94--0
PMAR74546:0:Tyes-131--0
PMAR74547:0:Tyes-377-0296
PMAR93060:0:Tyes-176--0
PMEN399739:0:Tyes13948303957
PMUL272843:1:Tyes52053511
PNAP365044:8:Tyes-763--0
PPEN278197:0:Tyes-747-0-
PPRO298386:2:Tyes13025
PPUT160488:0:Tno52051535
PPUT351746:0:Tyes53051545
PPUT76869:0:Tno600-625
PRUM264731:0:Tyes---0-
PSP117:0:Tyes---0473
PSP296591:2:Tyes-0---
PSP312153:0:Tyes-0---
PSP56811:2:Tyes1326216132414230
PSTU379731:0:Tyes-6365636580
PSYR205918:0:Tyes-4547304552
PSYR223283:2:Tyes-650370
PTHE370438:0:Tyes---26940
PTOR263820:0:Tyes-0---
RCAS383372:0:Tyes-2670--0
RDEN375451:4:Tyes-1616-17040
RETL347834:5:Tyes-0-10741057
REUT264198:2:Tyes----0
REUT264198:3:Tyes-0---
REUT381666:1:Tyes----0
REUT381666:2:Tyes-0---
RFER338969:1:Tyes-339--0
RLEG216596:6:Tyes-0-12811263
RMET266264:1:Tyes----0
RMET266264:2:Tyes-0---
RPAL258594:0:Tyes-0-24972345
RPAL316055:0:Tyes27190-27632154
RPAL316056:0:Tyes-0-27472033
RPAL316057:0:Tyes-0-21451871
RPAL316058:0:Tyes31592083-29850
RPOM246200:1:Tyes-0-15941983
RRUB269796:1:Tyes---01371
RSAL288705:0:Tyes----0
RSOL267608:1:Tyes-0---
RSP101510:3:Fyes-0--3582
RSP357808:0:Tyes-2606--0
RSPH272943:4:Tyes-1512-02522
RSPH349101:2:Tno-2001-5360
RSPH349102:5:Tyes-864-2830
RXYL266117:0:Tyes-0-597104
SACI56780:0:Tyes----0
SAGA205921:0:Tno-763-0-
SAGA208435:0:Tno-760-0-
SAGA211110:0:Tyes-810-0-
SALA317655:1:Tyes-0--525
SARE391037:0:Tyes----0
SAUR158878:1:Tno-838-0174
SAUR158879:1:Tno-839-0171
SAUR196620:0:Tno-807-0164
SAUR273036:0:Tno-820-0158
SAUR282458:0:Tno-814-0168
SAUR282459:0:Tno-792-0165
SAUR359786:1:Tno-793-0168
SAUR359787:1:Tno-739-0168
SAUR367830:3:Tno-713-0158
SAUR418127:0:Tyes-837-0173
SAUR426430:0:Tno-834-0164
SAUR93061:0:Fno-957-0177
SAUR93062:1:Tno-706-0164
SAVE227882:1:Fyes---9510
SBAL399599:3:Tyes30062717300530080
SBAL402882:1:Tno29052615290429060
SBOY300268:1:Tyes30421
SCO:2:Fyes---02358
SDEG203122:0:Tyes1290-1301
SDEN318161:0:Tyes1266202329
SDYS300267:1:Tyes30421
SELO269084:0:Tyes-703-02283
SENT209261:0:Tno15034
SENT220341:0:Tno15034
SENT295319:0:Tno16035
SENT321314:2:Tno14023
SENT454169:2:Tno14023
SEPI176279:1:Tyes-795-0170
SEPI176280:0:Tno-728-0165
SERY405948:0:Tyes----0
SFLE198214:0:Tyes15034
SFLE373384:0:Tno14023
SFUM335543:0:Tyes----0
SGLO343509:3:Tyes14023
SGOR29390:0:Tyes-0---
SHAE279808:0:Tyes-0-689523
SHAL458817:0:Tyes2735147273427420
SHIGELLA:0:Tno15034
SLAC55218:1:Fyes-962-7300
SLOI323850:0:Tyes23190231823202447
SMAR399550:0:Tyes----0
SMED366394:3:Tyes-0-10621034
SMEL266834:2:Tyes-0-913885
SMUT210007:0:Tyes-845-0-
SONE211586:1:Tyes13722088
SPEA398579:0:Tno2788184278627910
SPNE1313:0:Tyes-0-1249-
SPNE170187:0:Tyes-0-330-
SPNE171101:0:Tno-0-1233-
SPNE487213:0:Tno-0-647-
SPNE487214:0:Tno-0-1272-
SPNE488221:0:Tno-0-1224-
SPRO399741:1:Tyes14023
SPYO160490:0:Tno-0---
SPYO186103:0:Tno-0---
SPYO193567:0:Tno-0---
SPYO198466:0:Tno-0---
SPYO286636:0:Tno-0---
SPYO293653:0:Tno-0---
SPYO319701:0:Tyes-0---
SPYO370551:0:Tno-0---
SPYO370552:0:Tno-0---
SPYO370553:0:Tno-0---
SPYO370554:0:Tyes-0---
SRUB309807:1:Tyes-0-1099-
SSAP342451:2:Tyes-0--515
SSED425104:0:Tyes28850288428923154
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SSP644076:6:Fyes----0
SSP644076:7:Fyes-0-66-
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