CANDIDATE ID: 574

CANDIDATE ID: 574

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9942930e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.0000012e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7879 (yjgH) (b4248)
   Products of gene:
     - G7879-MONOMER (predicted mRNA endoribonuclease)

- G7877 (yjgF) (b4243)
   Products of gene:
     - G7877-MONOMER (conserved protein)
     - CPLX0-1881 (YjgF homotrimer)

- G7626 (tdcF) (b3113)
   Products of gene:
     - G7626-MONOMER (predicted L-PSP (mRNA) endoribonuclease)

- G6521 (rutC) (b1010)
   Products of gene:
     - G6521-MONOMER (predicted aminoacrylate peracid reductase)
       Reactions:
        aminoacrylate peracid + a reduced electron acceptor  ->  aminoacrylate + an oxidized electron acceptor
         In pathways
         PWY0-1471 (uracil degradation III)

- EG10899 (rpoZ) (b3649)
   Products of gene:
     - EG10899-MONOMER (RNA polymerase, ω subunit)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 191
Effective number of orgs (counting one per cluster within 468 clusters): 129

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTHE300852 ncbi Thermus thermophilus HB84
TTHE262724 ncbi Thermus thermophilus HB274
TLET416591 ncbi Thermotoga lettingae TMO4
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN243275 ncbi Treponema denticola ATCC 354054
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE299768 ncbi Streptococcus thermophilus CNRZ10664
SSP94122 ncbi Shewanella sp. ANA-35
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP1148 ncbi Synechocystis sp. PCC 68034
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63014
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2174
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSP357808 ncbi Roseiflexus sp. RS-14
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.4
PRUM264731 ncbi Prevotella ruminicola 234
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PMOB403833 ncbi Petrotoga mobilis SJ954
PMAR93060 ncbi Prochlorococcus marinus MIT 92154
PMAR74546 ncbi Prochlorococcus marinus MIT 93124
PMAR167546 ncbi Prochlorococcus marinus MIT 93014
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PISL384616 ncbi Pyrobaculum islandicum DSM 41844
PING357804 ncbi Psychromonas ingrahamii 374
PHOR70601 ncbi Pyrococcus horikoshii OT34
PFUR186497 ncbi Pyrococcus furiosus DSM 36384
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PDIS435591 ncbi Parabacteroides distasonis ATCC 85034
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135144
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
PAER178306 ncbi Pyrobaculum aerophilum IM24
PABY272844 ncbi Pyrococcus abyssi GE54
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
MXAN246197 ncbi Myxococcus xanthus DK 16224
MSP400668 ncbi Marinomonas sp. MWYL15
MAQU351348 ncbi Marinobacter aquaeolei VT85
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LINN272626 ncbi Listeria innocua Clip112624
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
HMUK485914 ncbi Halomicrobium mukohataei DSM 122864
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HBUT415426 ncbi Hyperthermus butylicus DSM 54564
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GFOR411154 ncbi Gramella forsetii KT08034
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.5
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DRED349161 ncbi Desulfotomaculum reducens MI-14
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT4
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF84
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDIF272563 ncbi Clostridium difficile 6304
CCUR360105 ncbi Campylobacter curvus 525.924
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BSUB ncbi Bacillus subtilis subtilis 1684
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4


Names of the homologs of the genes in the group in each of these orgs
  G7879   G7877   G7626   G6521   EG10899   
YPSE349747 YPSIP31758_0542YPSIP31758_0434YPSIP31758_0434YPSIP31758_0542YPSIP31758_0040
YPSE273123 YPTB3428YPTB3533YPTB3533YPTB3428YPTB0036
YPES386656 YPDSF_0412YPDSF_0307YPDSF_0307YPDSF_1778YPDSF_3866
YPES377628 YPN_0490YPN_3472YPN_3472YPN_1961YPN_3811
YPES360102 YPA_3163YPA_3713YPA_3713YPA_1852YPA_3503
YPES349746 YPANGOLA_A1054YPANGOLA_A1160YPANGOLA_A1160YPANGOLA_A3510YPANGOLA_A0044
YPES214092 YPO0627YPO3590YPO3590YPO1669YPO0039
YPES187410 Y3551Y0163Y0163Y1830Y0102
YENT393305 YE3768YE3768YE1948YE0046
XORY360094 XOOORF_4199XOOORF_4199XOOORF_4199XOOORF_4201
XORY342109 XOO1047XOO1047XOO1047XOO1045
XORY291331 XOO1150XOO1150XOO1150XOO1148
XFAS405440 XFASM12_1873XFASM12_1873XFASM12_1873XFASM12_0842
XFAS183190 PD_1706PD_1706PD_1706PD_0719
XFAS160492 XF0353XF0353XF0353XF1502
XCAM487884 XCC-B100_3907XCC-B100_0946XCC-B100_0946XCC-B100_0936
XCAM316273 XCAORF_0585XCAORF_3579XCAORF_3579XCAORF_3588
XCAM314565 XC_3791XC_0948XC_0948XC_0957
XCAM190485 XCC3720XCC3239XCC3239XCC3248
XAXO190486 XAC3762XAC3392XAC3392XAC3394
VVUL216895 VV1_1463VV1_1463VV1_0167VV1_0851
VVUL196600 VV2922VV2922VV1022VV0242
VPAR223926 VP2656VP2656VP2174VP0160
VFIS312309 VF0404VF0404VF0404VF0105
VCHO345073 VC0395_A2094VC0395_A2094VC0395_A2094VC0395_A2281
VCHO VC2512VC2512VC2512VC2709
TTHE300852 TTHA0137TTHA0137TTHA0137TTHA0137
TTHE262724 TT_C1857TT_C1857TT_C1857TT_C1857
TLET416591 TLET_0269TLET_0269TLET_0269TLET_0269
TELO197221 TLL0730TLL0730TLL0730TLL0730
TDEN243275 TDE_2069TDE_2069TDE_2069TDE_2069
STYP99287 STM1549STM4458STM4458STM4458STM3741
STHE299768 STR0824STR0824STR0824STR0824
SSP94122 SHEWANA3_3813SHEWANA3_2971SHEWANA3_2971SHEWANA3_2971SHEWANA3_3811
SSP321332 CYB_0559CYB_0559CYB_0559CYB_0559
SSP1148 SLR0318SLR0709SLR0709SLR0709
SSON300269 SSO_4428SSO_4424SSO_3270SSO_3270SSO_3756
SSED425104 SSED_0333SSED_2538SSED_2538SSED_0333SSED_0335
SSAP342451 SSP2259SSP2259SSP2259SSP2259
SPRO399741 SPRO_3089SPRO_0543SPRO_0543SPRO_1821SPRO_4868
SPEA398579 SPEA_3880SPEA_4166SPEA_4166SPEA_4166SPEA_3878
SONE211586 SO_0358SO_1404SO_1404SO_1404SO_0360
SLOI323850 SHEW_3500SHEW_3500SHEW_3500SHEW_3498
SHIGELLA YJGHYJGFYHARS1083RPOZ
SHAL458817 SHAL_0389SHAL_0077SHAL_0077SHAL_0077SHAL_0391
SHAE279808 SH2514SH2514SH2514SH2514
SFLE373384 SFV_4246SFV_4249SFV_3154SFV_1022SFV_3880
SFLE198214 AAN45660.1AAN45665.1AAN44624.1AAN42639.1AAN45136.1
SENT454169 SEHA_C1720SEHA_C4861SEHA_C4861SEHA_C4861SEHA_C4067
SENT321314 SCH_4313SCH_4313SCH_4313SCH_3665
SENT295319 SPA4259SPA4259SPA4259SPA3593
SENT220341 STY4798STY4798STY4798STY4051
SENT209261 T4493T4493T4493T3777
SELO269084 SYC0571_CSYC0571_CSYC0571_CSYC0571_C
SDYS300267 SDY_4266SDY_4262SDY_4262SDY_0985SDY_4081
SDEN318161 SDEN_3436SDEN_3436SDEN_3436SDEN_3434
SBOY300268 SBO_4199SBO_4203SBO_2978SBO_2978SBO_3728
SBAL402882 SHEW185_0350SHEW185_3079SHEW185_3079SHEW185_3079SHEW185_0352
SBAL399599 SBAL195_0357SBAL195_3222SBAL195_3222SBAL195_3222SBAL195_0359
SACI56780 SYN_01814SYN_01814SYN_01814SYN_01280
RSP357808 ROSERS_1494ROSERS_2960ROSERS_2960ROSERS_2960
RCAS383372 RCAS_2625RCAS_1940RCAS_1940RCAS_1940
PSYR223283 PSPTO_2477PSPTO_0072PSPTO_0072PSPTO_1155PSPTO_0074
PSYR205918 PSYR_2243PSYR_0208PSYR_0208PSYR_0997PSYR_0210
PSTU379731 PST_1309PST_0458PST_0458PST_3599PST_0460
PSP56811 PSYCPRWF_0937PSYCPRWF_0574PSYCPRWF_0574PSYCPRWF_0576
PRUM264731 GFRORF2834GFRORF2834GFRORF2834GFRORF2834
PPUT76869 PPUTGB1_5351PPUTGB1_5351PPUTGB1_5351PPUTGB1_5351PPUTGB1_5349
PPUT351746 PPUT_5212PPUT_5212PPUT_5212PPUT_5212PPUT_5210
PPUT160488 PP_5303PP_5303PP_5303PP_5303PP_5301
PPRO298386 PBPRA3031PBPRA0470PBPRA0470PBPRA3031PBPRA0190
PMOB403833 PMOB_0308PMOB_0308PMOB_0308PMOB_0308
PMAR93060 P9215_06391P9215_06391P9215_06391P9215_06391
PMAR74546 PMT9312_0558PMT9312_0558PMT9312_0558PMT9312_0558
PMAR167546 P9301ORF_0598P9301ORF_0598P9301ORF_0598P9301ORF_0598
PLUM243265 PLU4498PLU4498PLU4498PLU0273
PISL384616 PISL_0414PISL_0414PISL_0414PISL_0414
PING357804 PING_3444PING_3444PING_2029PING_3624
PHOR70601 PH0854PH0854PH0854PH0854
PFUR186497 PF0668PF0668PF0668PF0668
PFLU220664 PFL_1693PFL_6064PFL_6064PFL_6064PFL_6062
PFLU216595 PFLU5996PFLU5996PFLU5996PFLU5996PFLU5994
PFLU205922 PFL_2367PFL_5552PFL_5552PFL_5552PFL_5550
PENT384676 PSEEN3861PSEEN5448PSEEN5448PSEEN5448PSEEN5446
PDIS435591 BDI_0709BDI_0709BDI_0709BDI_0709
PCRY335284 PCRYO_0250PCRYO_2006PCRYO_2006PCRYO_2006PCRYO_2004
PCAR338963 PCAR_1288PCAR_1288PCAR_1288PCAR_1288PCAR_1286
PARS340102 PARS_1258PARS_1258PARS_1258PARS_1258
PARC259536 PSYC_1726PSYC_1726PSYC_1726PSYC_1726PSYC_1724
PAER208964 PA4173PA5339PA5339PA5339PA5337
PAER208963 PA14_09920PA14_70480PA14_70480PA14_70480PA14_70450
PAER178306 PAE3003PAE3003PAE3003PAE3003
PABY272844 PAB0825PAB0825PAB0825PAB0825
NSP103690 ALL3869ALL3869ALL3869ALL3869
NOCE323261 NOC_1215NOC_1215NOC_1215NOC_1213
NMEN374833 NMCC_0616NMCC_0616NMCC_0616NMCC_0616NMCC_1570
NMEN272831 NMC0611NMC0611NMC0611NMC0611NMC1578
NMEN122587 NMA0861NMA0861NMA0861NMA1918
NMEN122586 NMB_0662NMB_0662NMB_0662NMB_0662NMB_1660
NGON242231 NGO0232NGO0232NGO0232NGO1309
MXAN246197 MXAN_1692MXAN_3205MXAN_3205MXAN_4890
MSP400668 MMWYL1_4387MMWYL1_4387MMWYL1_4387MMWYL1_4387MMWYL1_4385
MAQU351348 MAQU_0637MAQU_0637MAQU_0637MAQU_0637MAQU_0635
LWEL386043 LWE0837LWE0837LWE0837LWE0837
LMON265669 LMOF2365_0861LMOF2365_0861LMOF2365_0861LMOF2365_0861
LMON169963 LMO0844LMO0844LMO0844LMO0844
LINN272626 LIN0837LIN0837LIN0837LIN0837
KPNE272620 GKPORF_B1629GKPORF_B4015GKPORF_B4015GKPORF_B5477GKPORF_B3358
JSP375286 MMA_1646MMA_0887MMA_0887MMA_0887MMA_1327
HMUK485914 HMUK_0835HMUK_0835HMUK_0835HMUK_0939
HINF71421 HI_0719HI_0719HI_0719HI_1742
HINF281310 NTHI0851NTHI0851NTHI0851NTHI2053
HHAL349124 HHAL_0968HHAL_0968HHAL_0968HHAL_0970
HDUC233412 HD_1215HD_1215HD_1215HD_1923
HCHE349521 HCH_06312HCH_06312HCH_06312HCH_06312HCH_06314
HBUT415426 HBUT_0217HBUT_0217HBUT_0217HBUT_0217
HAUR316274 HAUR_0144HAUR_0144HAUR_0144HAUR_0144
GVIO251221 GLL1641GLR4007GLR4007GLR4007
GURA351605 GURA_3159GURA_3159GURA_3159GURA_3161
GSUL243231 GSU_2235GSU_2235GSU_2235GSU_2237
GMET269799 GMET_2324GMET_2324GMET_2324GMET_2326
GFOR411154 GFO_1641GFO_1641GFO_1641GFO_1641
FTUL458234 FTA_1583FTA_1583FTA_1583FTA_1583FTA_1617
FTUL418136 FTW_1504FTW_1504FTW_1504FTW_1504FTW_1540
FTUL401614 FTN_0639FTN_0639FTN_0639FTN_0639FTN_0613
FTUL393115 FTF1338CFTF1338CFTF1338CFTF1338CFTF0703
FTUL393011 FTH_1453FTH_1453FTH_1453FTH_1453FTH_1483
FTUL351581 FTL_1498FTL_1498FTL_1498FTL_1498FTL_1533
FRANT FT.1340CFT.1340CFT.1340CFT.1340CRPOZ
FPHI484022 FPHI_0193FPHI_0193FPHI_0193FPHI_0193FPHI_0228
ESP42895 ENT638_3519ENT638_0445ENT638_0445ENT638_1523ENT638_0090
ECOO157 YJGHYJGFYHARZ1509RPOZ
ECOL83334 ECS5225ECS5220ECS3993ECS1256ECS4524
ECOL585397 ECED1_3778ECED1_5098ECED1_3778ECED1_1166ECED1_4333
ECOL585057 ECIAI39_3614ECIAI39_4718ECIAI39_3614ECIAI39_2145ECIAI39_4171
ECOL585056 ECUMN_4779ECUMN_4776ECUMN_3597ECUMN_1193ECUMN_4165
ECOL585055 EC55989_4806EC55989_4803EC55989_3530EC55989_1121EC55989_4115
ECOL585035 ECS88_4836ECS88_4833ECS88_3506ECS88_1026ECS88_4064
ECOL585034 ECIAI1_4478ECIAI1_4475ECIAI1_3262ECIAI1_1055ECIAI1_3821
ECOL481805 ECOLC_3764ECOLC_3768ECOLC_0585ECOLC_2585ECOLC_0062
ECOL469008 ECBD_3787ECBD_3790ECBD_0627ECBD_2584ECBD_0076
ECOL439855 ECSMS35_4728ECSMS35_4724ECSMS35_3409ECSMS35_2115ECSMS35_3984
ECOL413997 ECB_04115ECB_04111ECB_02980ECB_01013ECB_03506
ECOL409438 ECSE_4554ECSE_4550ECSE_3397ECSE_1072ECSE_3931
ECOL405955 APECO1_3311APECO1_2149APECO1_3311APECO1_101APECO1_2812
ECOL364106 UTI89_C3548UTI89_C4848UTI89_C3548UTI89_C1073UTI89_C4194
ECOL362663 ECP_3206ECP_4493ECP_3206ECP_1009ECP_3747
ECOL331111 ECE24377A_4820ECE24377A_4816ECE24377A_3587ECE24377A_1128ECE24377A_4152
ECOL316407 ECK4242:JW4206:B4248ECK4238:JW5755:B4243ECK3102:JW5521:B3113ECK1001:JW0995:B1010ECK3639:JW3624:B3649
ECOL199310 C3871C5342C3871C1147C4474
ECAR218491 ECA0380ECA0380ECA0380ECA0039
DVUL882 DVU_0620DVU_2203DVU_2203DVU_0620DVU_3242
DRED349161 DRED_2343DRED_0412DRED_2343DRED_0412
DPSY177439 DP1504DP1384DP1504DP1878DP1481
DOLE96561 DOLE_0180DOLE_1176DOLE_1176DOLE_1176
DNOD246195 DNO_1019DNO_1019DNO_1019DNO_1019DNO_1021
DHAF138119 DSY4779DSY1335DSY1335DSY4043
DGEO319795 DGEO_0230DGEO_0230DGEO_0230DGEO_0230
DDES207559 DDE_2582DDE_0809DDE_0809DDE_1265DDE_0247
DARO159087 DARO_0355DARO_0355DARO_0355DARO_3844
CSAL290398 CSAL_0759CSAL_3236CSAL_3236CSAL_3236CSAL_3234
CPSY167879 CPS_3498CPS_4974CPS_4974CPS_4972
CPER289380 CPR_1089CPR_1089CPR_1089CPR_1089CPR_1718
CPER195103 CPF_1267CPF_1267CPF_1267CPF_1267CPF_2000
CPER195102 CPE1012CPE1012CPE1012CPE1012CPE1747
CNOV386415 NT01CX_0656NT01CX_0656NT01CX_0656NT01CX_0656
CKOR374847 KCR_0520KCR_0520KCR_0520KCR_0520
CHYD246194 CHY_2460CHY_2460CHY_2460CHY_2460
CDIF272563 CD2513CD3187CD3187CD3187
CCUR360105 CCV52592_0631CCV52592_0631CCV52592_0631CCV52592_0631
CBOT536232 CLM_3376CLM_3376CLM_2179CLM_3376
CBOT515621 CLJ_B3238CLJ_B3238CLJ_B2166CLJ_B3238
CBOT498213 CLD_1563CLD_1563CLD_2663CLD_1563
CBOT441772 CLI_3035CLI_3035CLI_2028CLI_3035
CBOT441771 CLC_2878CLC_2878CLC_1906CLC_2878
CBOT441770 CLB_3006CLB_3006CLB_1900CLB_3006
CBOT36826 CBO2981CBO2981CBO1961CBO2981
CBEI290402 CBEI_1979CBEI_1979CBEI_1979CBEI_1142
CACE272562 CAC1265CAC1265CAC1265CAC1719
BSUB BSU00480BSU00480BSU00480BSU00480
BPUM315750 BPUM_0032BPUM_0032BPUM_0032BPUM_0032
BBAC264462 BD1766BD1766BD1766BD1766BD1569
AVAR240292 AVA_1824AVA_1824AVA_1824AVA_1824
ASAL382245 ASA_0286ASA_0286ASA_0286ASA_0035
APLE416269 APL_0430APL_0430APL_0268APL_1826
AORE350688 CLOS_1743CLOS_1743CLOS_1743CLOS_1743
AMET293826 AMET_2316AMET_2316AMET_2316AMET_2316
AMAR329726 AM1_B0043AM1_3300AM1_3300AM1_3300
AHYD196024 AHA_4025AHA_4025AHA_4025AHA_0040
AEHR187272 MLG_2441MLG_2441MLG_2441MLG_2441MLG_2443
ADEH290397 ADEH_2881ADEH_2549ADEH_2549ADEH_3590


Organism features enriched in list (features available for 184 out of the 191 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 2.824e-656112
Arrangment:Singles 0.0000763111286
Disease:Botulism 0.003015955
Disease:Bubonic_plague 0.000934066
Disease:Dysentery 0.000934066
Disease:Gastroenteritis 0.00009521113
Disease:Meningitis_and_septicemia 0.009701144
Disease:Tularemia 0.003015955
Endospores:No 1.580e-642211
GC_Content_Range4:0-40 3.646e-741213
GC_Content_Range4:40-60 3.940e-14112224
GC_Content_Range4:60-100 0.000696931145
GC_Content_Range7:30-40 9.859e-729166
GC_Content_Range7:40-50 0.004534948117
GC_Content_Range7:50-60 1.350e-1164107
GC_Content_Range7:60-70 0.002650430134
Genome_Size_Range5:0-2 8.581e-922155
Genome_Size_Range5:4-6 9.582e-1192184
Genome_Size_Range9:1-2 0.000020322128
Genome_Size_Range9:2-3 0.008019328120
Genome_Size_Range9:4-5 6.813e-64996
Genome_Size_Range9:5-6 0.00010714388
Gram_Stain:Gram_Neg 5.842e-6129333
Gram_Stain:Gram_Pos 3.528e-626150
Habitat:Aquatic 0.00770353891
Habitat:Host-associated 0.000809249206
Habitat:Multiple 0.002273970178
Motility:No 3.054e-822151
Motility:Yes 2.497e-9117267
Oxygen_Req:Aerobic 0.007002247185
Oxygen_Req:Facultative 0.000645380201
Pathogenic_in:Plant 0.00403111015
Shape:Coccus 0.00029531382
Shape:Rod 2.637e-11145347
Shape:Spiral 0.0011705334
Temp._range:Psychrophilic 0.000552989



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 214
Effective number of orgs (counting one per cluster within 468 clusters): 180

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79011
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.0
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PAST100379 Onion yellows phytoplasma0
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NHAM323097 ncbi Nitrobacter hamburgensis X141
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSP266779 ncbi Chelativorans sp. BNC11
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HARS204773 ncbi Herminiimonas arsenicoxydans1
GOXY290633 ncbi Gluconobacter oxydans 621H0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BQUI283165 ncbi Bartonella quintana Toulouse1
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7879   G7877   G7626   G6521   EG10899   
ZMOB264203 ZMO1720
XAUT78245 XAUT_3837
WPIP955
WPIP80849
VEIS391735 VEIS_4219
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629 TERTU_0173
TPAL243276
TKOD69014
TFUS269800
TACI273075
SWOL335541
STRO369723 STROP_0668
STHE292459
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SMAR399550
SLAC55218 SL1157_1882
SERY405948 SACE_5165
SAVE227882 SAV3278
SARE391037
SAGA211110
SAGA208435
SAGA205921
RXYL266117 RXYL_2374
RTYP257363
RSPH349102 RSPH17025_2577
RSPH349101 RSPH17029_0302
RSPH272943 RSP_1669
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_2607
RPAL316057 RPD_2646
RPAL316056 RPC_2634
RPAL316055 RPE_3027
RMAS416276
RFEL315456
RDEN375451 RD1_1358
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_0685
RAKA293614
PTOR263820
PTHE370438
PSP312153 PNUC_1077
PSP117
PPEN278197
PNAP365044 PNAP_0810
PMAR74547 PMT1195
PMAR167539
PLUT319225
PAST100379
PACN267747
OTSU357244
OCAR504832 OCAR_5837
NWIN323098 NWI_1923
NSP35761
NSEN222891
NHAM323097 NHAM_2256
NFAR247156 NFA26270
NEUT335283 NEUT_0613
NEUR228410 NE2255
MVAN350058 MVAN_1158
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409 M446_0030
MSP266779 MESO_0945
MSME246196 MSMEG_5723
MSED399549 MSED_1403
MPUL272635
MPNE272634
MPET420662 MPE_A2716
MPEN272633
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR267377
MMAG342108 AMB2252
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_1300
MGIL350054
MGEN243273
MFLO265311
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007 MAB_2910C
LXYL281090
LSAK314315 LSA0443
LREU557436
LPNE272624 LPG2008
LPLA220668
LMES203120 LEUM_1955
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_0730
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
IHOS453591
HMOD498761
HARS204773 HEAR2131
GOXY290633
GBET391165 GBCGDNIH1_0988
FSUC59374
FSP1855
FSP106370
FNOD381764
FALN326424
ERUM302409 ERGA_CDS_02990
ERUM254945 ERWE_CDS_03050
ELIT314225 ELI_10980
ECHA205920 ECH_0796
ECAN269484 ECAJ_0280
DSHI398580 DSHI_0193
CVES412965 COSY_0376
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP501479 CSE45_0275
CRUT413404 RMAG_0405
CPRO264201 PC1534
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_1194
CMUR243161
CMIC443906
CMIC31964
CMET456442
CJEI306537
CGLU196627 CG0191
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCHL340177
CCAV227941
CABO218497
BXEN266265 BXE_B2982
BTUR314724
BTRI382640 BT_0780
BQUI283165 BQ04220
BMAL243160 BMA_2095
BLON206672
BHER314723
BHEN283166 BH05030
BGAR290434
BBUR224326
BBAC360095 BARBAKC583_0467
BAPH372461
BAFZ390236
AYEL322098
AURANTIMONAS
ASP232721 AJS_0948
ASP1667
APHA212042
AMAR234826
ALAI441768
AFUL224325
ACRY349163 ACRY_0530
ACEL351607 ACEL_0885
AAVE397945 AAVE_3584
AAEO224324 AQ_364


Organism features enriched in list (features available for 200 out of the 214 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 1.468e-913112
Arrangment:Singles 0.007478386286
Disease:Pharyngitis 0.000174788
Disease:Wide_range_of_infections 6.436e-61111
Disease:bronchitis_and_pneumonitis 0.000174788
Endospores:No 3.856e-697211
Endospores:Yes 0.0019946953
GC_Content_Range4:0-40 0.001923188213
GC_Content_Range4:40-60 0.000029155224
GC_Content_Range7:0-30 0.00264092547
GC_Content_Range7:50-60 0.000048920107
GC_Content_Range7:70-100 0.0014271911
Genome_Size_Range5:0-2 1.579e-1797155
Genome_Size_Range5:4-6 1.782e-639184
Genome_Size_Range5:6-10 0.0012950747
Genome_Size_Range9:0-1 3.275e-82327
Genome_Size_Range9:1-2 3.632e-1074128
Genome_Size_Range9:4-5 0.00584082396
Genome_Size_Range9:5-6 0.00016961688
Genome_Size_Range9:6-8 0.0004702438
Gram_Stain:Gram_Neg 0.000016891333
Gram_Stain:Gram_Pos 0.008873462150
Habitat:Host-associated 8.485e-797206
Habitat:Multiple 0.008345150178
Motility:No 0.000013773151
Motility:Yes 1.209e-860267
Oxygen_Req:Facultative 0.004269056201
Shape:Irregular_coccus 0.00708511117
Shape:Rod 0.000035297347
Shape:Sphere 0.00036591419



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7877   G7626   G6521   EG10899   
G78790.9997160.999710.9996640.998902
G78770.9999820.9999350.998871
G76260.999920.999052
G65210.998541
EG10899



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PAIRWISE BLAST SCORES:

  G7879   G7877   G7626   G6521   EG10899   
G78790.0f0-5.8e-7--
G7877-0.0f01.7e-46--
G7626-1.7e-460.0f0--
G6521--1.4e-100.0f0-
EG10899----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7877 G7879 (centered at G7879)
EG10899 (centered at EG10899)
G6521 (centered at G6521)
G7626 (centered at G7626)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7879   G7877   G7626   G6521   EG10899   
285/623320/623316/623318/623266/623
AAEO224324:0:Tyes0----
AAUR290340:2:Tyes0--3254-
AAVE397945:0:Tyes----0
ABAC204669:0:Tyes-000-
ABAU360910:0:Tyes1--0690
ABOR393595:0:Tyes0---2
ABUT367737:0:Tyes-000-
ACAU438753:0:Tyes0--22951039
ACEL351607:0:Tyes0----
ACRY349163:8:Tyes----0
ADEH290397:0:Tyes33900-1054
AEHR187272:0:Tyes00002
AFER243159:0:Tyes-0--2
AHYD196024:0:Tyes-3836383638360
AMAR329726:7:Tyes0----
AMAR329726:9:Tyes-000-
AMET293826:0:Tyes0000-
ANAE240017:0:Tyes000--
AORE350688:0:Tyes0000-
APER272557:0:Tyes000--
APLE416269:0:Tyes-15915901596
APLE434271:0:Tno-00-1437
ASAL382245:5:Tyes-2412412410
ASP232721:2:Tyes----0
ASP62928:0:Tyes0--03533
ASP62977:0:Tyes3070--03068
ASP76114:1:Tyes0----
ASP76114:2:Tyes---0709
AVAR240292:3:Tyes0000-
BABO262698:0:Tno0--0-
BABO262698:1:Tno----0
BAMB339670:1:Tno0----
BAMB339670:3:Tno----0
BAMB398577:1:Tno0----
BAMB398577:3:Tno----0
BAMY326423:0:Tyes-000-
BANT260799:0:Tno-000-
BANT261594:2:Tno-000-
BANT568206:2:Tyes-000-
BANT592021:2:Tno-000-
BAPH198804:0:Tyes-00--
BBAC264462:0:Tyes1851851851850
BBAC360095:0:Tyes----0
BBRO257310:0:Tyes0--13042521
BCAN483179:0:Tno0--0-
BCAN483179:1:Tno----0
BCEN331271:1:Tno0----
BCEN331271:2:Tno----0
BCEN331272:2:Tyes0----
BCEN331272:3:Tyes----0
BCER226900:1:Tyes-000-
BCER288681:0:Tno-000-
BCER315749:1:Tyes-000-
BCER405917:1:Tyes-000-
BCER572264:1:Tno-000-
BCIC186490:0:Tyes-128128-0
BCLA66692:0:Tyes-000-
BFRA272559:1:Tyes-000-
BFRA295405:0:Tno-000-
BHAL272558:0:Tyes-000-
BHEN283166:0:Tyes----0
BJAP224911:0:Fyes424--0606
BLIC279010:0:Tyes-000-
BMAL243160:1:Tno----0
BMAL320388:0:Tno0----
BMAL320388:1:Tno----0
BMAL320389:0:Tyes0----
BMAL320389:1:Tyes----0
BMEL224914:0:Tno0--0-
BMEL224914:1:Tno----0
BMEL359391:0:Tno0--0-
BMEL359391:1:Tno----0
BOVI236:0:Tyes0--0-
BOVI236:1:Tyes----0
BPAR257311:0:Tno0--17602411
BPER257313:0:Tyes0--13391029
BPET94624:0:Tyes0---857
BPSE272560:0:Tyes0----
BPSE272560:1:Tyes----0
BPSE320372:0:Tno0----
BPSE320372:1:Tno----0
BPSE320373:0:Tno0----
BPSE320373:1:Tno----0
BPUM315750:0:Tyes0000-
BQUI283165:0:Tyes----0
BSP107806:2:Tyes-00--
BSP36773:1:Tyes---0-
BSP36773:2:Tyes1187---0
BSP376:0:Tyes2892--02797
BSUB:0:Tyes0000-
BSUI204722:0:Tyes0--0-
BSUI204722:1:Tyes----0
BSUI470137:0:Tno0--0-
BSUI470137:1:Tno----0
BTHA271848:0:Tno0----
BTHA271848:1:Tno----0
BTHE226186:0:Tyes-000-
BTHU281309:1:Tno-000-
BTHU412694:1:Tno-000-
BTRI382640:1:Tyes----0
BVIE269482:5:Tyes0----
BVIE269482:7:Tyes----0
BWEI315730:4:Tyes-000-
BXEN266265:1:Tyes---0-
CACE272562:1:Tyes-000449
CAULO:0:Tyes---12650
CBEI290402:0:Tyes-8258258250
CBLO203907:0:Tyes-00--
CBLO291272:0:Tno-00-600
CBOT36826:1:Tno1023102301023-
CBOT441770:0:Tyes1083108301083-
CBOT441771:0:Tno9439430943-
CBOT441772:1:Tno9759750975-
CBOT498213:1:Tno1090109001090-
CBOT508765:1:Tyes-000-
CBOT515621:2:Tyes1053105301053-
CBOT536232:0:Tno1160116001160-
CBUR227377:1:Tyes2-2-0
CBUR360115:1:Tno--2-0
CBUR434922:2:Tno0-0-2
CCON360104:2:Tyes000--
CCUR360105:0:Tyes0000-
CDIF272563:1:Tyes0679679679-
CFET360106:0:Tyes000--
CGLU196627:0:Tyes0----
CHOM360107:1:Tyes-000-
CHUT269798:0:Tyes-000-
CHYD246194:0:Tyes0000-
CJAP155077:0:Tyes2---0
CJEJ192222:0:Tyes000--
CJEJ195099:0:Tno000--
CJEJ354242:2:Tyes000--
CJEJ360109:0:Tyes000--
CJEJ407148:0:Tno000--
CKLU431943:1:Tyes-000-
CKOR374847:0:Tyes0000-
CMAQ397948:0:Tyes0--0-
CNOV386415:0:Tyes0000-
CPEL335992:0:Tyes----0
CPER195102:1:Tyes0000736
CPER195103:0:Tno0000721
CPER289380:3:Tyes0000621
CPHY357809:0:Tyes-0-0-
CPRO264201:0:Fyes---0-
CPSY167879:0:Tyes014411441-1439
CRUT413404:0:Tyes----0
CSAL290398:0:Tyes02522252225222520
CSP501479:8:Fyes----0
CSP78:2:Tyes1463--22840
CTET212717:0:Tyes-000-
CVES412965:0:Tyes----0
CVIO243365:0:Tyes0---2924
DARO159087:0:Tyes00-03514
DDES207559:0:Tyes237156756710300
DETH243164:0:Tyes0--0-
DGEO319795:1:Tyes0000-
DHAF138119:0:Tyes3480002742-
DNOD246195:0:Tyes00002
DOLE96561:0:Tyes0100910091009-
DPSY177439:2:Tyes1230123506100
DRAD243230:3:Tyes000--
DRED349161:0:Tyes1931019310-
DSHI398580:5:Tyes----0
DSP216389:0:Tyes0--0-
DSP255470:0:Tno0--0-
DVUL882:1:Tyes01574157402609
ECAN269484:0:Tyes----0
ECAR218491:0:Tyes-3543543540
ECHA205920:0:Tyes----0
ECOL199310:0:Tno26664117266603264
ECOL316407:0:Tno32283224210102615
ECOL331111:6:Tno35453541236202912
ECOL362663:0:Tno21993470219902735
ECOL364106:1:Tno24713755247103110
ECOL405955:2:Tyes22513453225102764
ECOL409438:6:Tyes35603556236202905
ECOL413997:0:Tno31313127197002500
ECOL439855:4:Tno25112507124401806
ECOL469008:0:Tno3695369855124970
ECOL481805:0:Tno3711371552525260
ECOL585034:0:Tno33483344217202720
ECOL585035:0:Tno36583654238602931
ECOL585055:0:Tno36183614237402944
ECOL585056:2:Tno35723568239702960
ECOL585057:0:Tno14832583148302032
ECOL585397:0:Tno25263803252603063
ECOL83334:0:Tno40724067279503337
ECOLI:0:Tno33063302215502698
ECOO157:0:Tno39823976273503295
EFAE226185:3:Tyes-238623860-
EFER585054:1:Tyes-377377-0
ELIT314225:0:Tyes----0
ERUM254945:0:Tyes----0
ERUM302409:0:Tno----0
ESP42895:1:Tyes346636336314580
FJOH376686:0:Tyes-000-
FMAG334413:1:Tyes--00-
FNUC190304:0:Tyes-000-
FPHI484022:1:Tyes000034
FRANT:0:Tno5945945945940
FTUL351581:0:Tno000030
FTUL393011:0:Tno000024
FTUL393115:0:Tyes5845845845840
FTUL401614:0:Tyes252525250
FTUL418136:0:Tno000026
FTUL458234:0:Tno000026
GBET391165:0:Tyes----0
GFOR411154:0:Tyes0000-
GKAU235909:1:Tyes-000-
GMET269799:1:Tyes000-2
GSUL243231:0:Tyes000-2
GTHE420246:1:Tyes-000-
GURA351605:0:Tyes-0002
GVIO251221:0:Tyes0239423942394-
HACI382638:1:Tyes-000-
HARS204773:0:Tyes----0
HAUR316274:2:Tyes0000-
HBUT415426:0:Tyes0000-
HCHE349521:0:Tyes00002
HDUC233412:0:Tyes-000607
HHAL349124:0:Tyes0-002
HHEP235279:0:Tyes-0-0-
HINF281310:0:Tyes-0001068
HINF374930:0:Tyes-914914-0
HINF71421:0:Tno-0001007
HMAR272569:7:Tyes9200--
HMUK485914:1:Tyes000104-
HNEP81032:0:Tyes1881--0404
HPY:0:Tno-00--
HPYL357544:1:Tyes-000-
HPYL85963:0:Tno-00--
HSAL478009:4:Tyes000--
HSOM205914:1:Tyes-00-1337
HSOM228400:0:Tno-14831483-0
HSP64091:2:Tno000--
HWAL362976:1:Tyes-301-0-
ILOI283942:0:Tyes0---807
JSP290400:1:Tyes599--8230
JSP375286:0:Tyes776000445
KPNE272620:2:Tyes02322232237531696
LCHO395495:0:Tyes----0
LINN272626:1:Tno0000-
LLAC272622:5:Tyes-0-0-
LLAC272623:0:Tyes-000-
LMES203120:1:Tyes--0--
LMON169963:0:Tno0000-
LMON265669:0:Tyes0000-
LPNE272624:0:Tno---0-
LPNE297245:1:Fno--002
LPNE297246:1:Fyes---02
LPNE400673:0:Tno---02
LSAK314315:0:Tyes0----
LSPH444177:1:Tyes-000-
LWEL386043:0:Tyes0000-
MABS561007:1:Tyes0----
MAER449447:0:Tyes-000-
MAQU351348:2:Tyes22220
MCAP243233:0:Tyes2--20
MCAP340047:0:Tyes-000-
MEXT419610:0:Tyes0--6312092
MFLA265072:0:Tyes2--20
MHUN323259:0:Tyes---0-
MLOT266835:2:Tyes0---2404
MMAG342108:0:Tyes----0
MMAR368407:0:Tyes00---
MMAR394221:0:Tyes245---0
MMYC272632:0:Tyes-000-
MPET420662:1:Tyes----0
MSED399549:0:Tyes---0-
MSME246196:0:Tyes0----
MSP164756:1:Tno709--0-
MSP164757:0:Tno1075--0-
MSP189918:2:Tyes705--0-
MSP266779:3:Tyes----0
MSP400668:0:Tyes22220
MSP409:2:Tyes----0
MSUC221988:0:Tyes-460460-0
MTHE264732:0:Tyes-000-
MVAN350058:0:Tyes0----
MXAN246197:0:Tyes014481448-3075
NARO279238:0:Tyes2997---0
NEUR228410:0:Tyes----0
NEUT335283:2:Tyes----0
NFAR247156:2:Tyes0----
NGON242231:0:Tyes000-976
NHAM323097:2:Tyes----0
NMEN122586:0:Tno0000960
NMEN122587:0:Tyes00-01003
NMEN272831:0:Tno0000832
NMEN374833:0:Tno0000943
NMUL323848:3:Tyes828---0
NOCE323261:1:Tyes22-20
NPHA348780:2:Tyes00-0-
NSP103690:6:Tyes0000-
NSP387092:0:Tyes-000-
NWIN323098:0:Tyes----0
OANT439375:4:Tyes263--0-
OANT439375:5:Tyes----0
OCAR504832:0:Tyes----0
OIHE221109:0:Tyes000--
PABY272844:0:Tyes0000-
PAER178306:0:Tyes0000-
PAER208963:0:Tyes04927492749274925
PAER208964:0:Tno01191119111911189
PARC259536:0:Tyes22220
PARS340102:0:Tyes0000-
PATL342610:0:Tyes2-2-0
PCAR338963:0:Tyes22220
PCRY335284:1:Tyes01749174917491747
PDIS435591:0:Tyes0000-
PENT384676:0:Tyes01505150515051503
PFLU205922:0:Tyes03221322132213219
PFLU216595:1:Tyes22220
PFLU220664:0:Tyes04294429442944292
PFUR186497:0:Tyes0000-
PGIN242619:0:Tyes-000-
PHAL326442:1:Tyes2-2-0
PHOR70601:0:Tyes0000-
PING357804:0:Tyes-1338133801517
PINT246198:0:Tyes-000-
PISL384616:0:Tyes0000-
PLUM243265:0:Fyes-4291429142910
PMAR146891:0:Tyes-0-0-
PMAR167540:0:Tyes-0-0-
PMAR167542:0:Tyes-000-
PMAR167546:0:Tyes0000-
PMAR167555:0:Tyes-0-0-
PMAR59920:0:Tno-000-
PMAR74546:0:Tyes0000-
PMAR74547:0:Tyes---0-
PMAR93060:0:Tyes0000-
PMEN399739:0:Tyes1902--04300
PMOB403833:0:Tyes0000-
PMUL272843:1:Tyes-545545-0
PNAP365044:8:Tyes----0
PPRO298386:2:Tyes283328028028330
PPUT160488:0:Tno22220
PPUT351746:0:Tyes22220
PPUT76869:0:Tno22220
PRUM264731:0:Tyes0000-
PSP296591:2:Tyes4130--0679
PSP312153:0:Tyes----0
PSP56811:2:Tyes3670-02
PSTU379731:0:Tyes8500031242
PSYR205918:0:Tyes2038007842
PSYR223283:2:Tyes23850010742
RALB246199:0:Tyes-0---
RCAS383372:0:Tyes673000-
RDEN375451:4:Tyes----0
RETL347834:3:Tyes---0-
RETL347834:5:Tyes0---774
REUT264198:1:Tyes0----
REUT264198:3:Tyes----0
REUT381666:2:Tyes0---119
RFER338969:1:Tyes0--02213
RLEG216596:4:Tyes---0-
RLEG216596:6:Tyes0---338
RMET266264:1:Tyes0--678-
RMET266264:2:Tyes----0
RPAL258594:0:Tyes0---203
RPAL316055:0:Tyes----0
RPAL316056:0:Tyes----0
RPAL316057:0:Tyes----0
RPAL316058:0:Tyes----0
RPOM246200:1:Tyes0---489
RRUB269796:1:Tyes0---146
RSAL288705:0:Tyes1261--0-
RSOL267608:0:Tyes0--7-
RSOL267608:1:Tyes----0
RSP101510:3:Fyes2842--0-
RSP357808:0:Tyes0145014501450-
RSPH272943:4:Tyes----0
RSPH349101:2:Tno----0
RSPH349102:5:Tyes----0
RXYL266117:0:Tyes---0-
SACI330779:0:Tyes-000-
SACI56780:0:Tyes-2468246824680
SALA317655:1:Tyes0---1483
SAUR158878:1:Tno-000-
SAUR158879:1:Tno-000-
SAUR196620:0:Tno-000-
SAUR273036:0:Tno-000-
SAUR282458:0:Tno-000-
SAUR282459:0:Tno-000-
SAUR359786:1:Tno-000-
SAUR359787:1:Tno-000-
SAUR367830:3:Tno-000-
SAUR418127:0:Tyes-000-
SAUR426430:0:Tno-000-
SAUR93061:0:Fno-000-
SAUR93062:1:Tno-000-
SAVE227882:1:Fyes0----
SBAL399599:3:Tyes02930293029302
SBAL402882:1:Tno02774277427742
SBOY300268:1:Tyes1160116400720
SCO:2:Fyes0--0-
SDEG203122:0:Tyes2---0
SDEN318161:0:Tyes2-220
SDYS300267:1:Tyes30653061306102896
SELO269084:0:Tyes0000-
SENT209261:0:Tno-6876876870
SENT220341:0:Tno-6976976970
SENT295319:0:Tno-6356356350
SENT321314:2:Tno-6696696690
SENT454169:2:Tno03006300630062258
SEPI176279:1:Tyes-000-
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