CANDIDATE ID: 575

CANDIDATE ID: 575

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9921590e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.0000012e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7879 (yjgH) (b4248)
   Products of gene:
     - G7879-MONOMER (predicted mRNA endoribonuclease)

- G7877 (yjgF) (b4243)
   Products of gene:
     - G7877-MONOMER (conserved protein)
     - CPLX0-1881 (YjgF homotrimer)

- G7626 (tdcF) (b3113)
   Products of gene:
     - G7626-MONOMER (predicted L-PSP (mRNA) endoribonuclease)

- EG10966 (spoT) (b3650)
   Products of gene:
     - SPOT-MONOMER (guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional])
       Reactions:
        pppGpp + H2O  ->  GTP + diphosphate + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)
        ATP + GDP  ->  AMP + ppGpp + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)
        ppGpp + H2O  ->  diphosphate + GDP + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)

- EG10899 (rpoZ) (b3649)
   Products of gene:
     - EG10899-MONOMER (RNA polymerase, ω subunit)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 195
Effective number of orgs (counting one per cluster within 468 clusters): 125

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTHE300852 ncbi Thermus thermophilus HB84
TTHE262724 ncbi Thermus thermophilus HB274
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE322159 ncbi Streptococcus thermophilus LMD-94
STHE299768 ncbi Streptococcus thermophilus CNRZ10664
STHE264199 ncbi Streptococcus thermophilus LMG 183114
SSP94122 ncbi Shewanella sp. ANA-35
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP1148 ncbi Synechocystis sp. PCC 68034
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705854
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-64
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-144
SPNE171101 ncbi Streptococcus pneumoniae R64
SPNE170187 ncbi Streptococcus pneumoniae G544
SPNE1313 Streptococcus pneumoniae4
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SGOR29390 Streptococcus gordonii Challis4
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63014
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2174
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSP357808 ncbi Roseiflexus sp. RS-14
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMAR93060 ncbi Prochlorococcus marinus MIT 92154
PMAR74546 ncbi Prochlorococcus marinus MIT 93124
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL15
MAQU351348 ncbi Marinobacter aquaeolei VT85
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LINN272626 ncbi Listeria innocua Clip112624
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DRED349161 ncbi Desulfotomaculum reducens MI-14
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDIF272563 ncbi Clostridium difficile 6304
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BSUB ncbi Bacillus subtilis subtilis 1684
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5


Names of the homologs of the genes in the group in each of these orgs
  G7879   G7877   G7626   EG10966   EG10899   
YPSE349747 YPSIP31758_0542YPSIP31758_0434YPSIP31758_0434YPSIP31758_0039YPSIP31758_0040
YPSE273123 YPTB3428YPTB3533YPTB3533YPTB0035YPTB0036
YPES386656 YPDSF_0412YPDSF_0307YPDSF_0307YPDSF_3867YPDSF_3866
YPES377628 YPN_0490YPN_3472YPN_3472YPN_3812YPN_3811
YPES360102 YPA_3163YPA_3713YPA_3713YPA_3504YPA_3503
YPES349746 YPANGOLA_A1054YPANGOLA_A1160YPANGOLA_A1160YPANGOLA_A0043YPANGOLA_A0044
YPES214092 YPO0627YPO3590YPO3590YPO0038YPO0039
YPES187410 Y3551Y0163Y0163Y0103Y0102
YENT393305 YE3768YE3768YE0045YE0046
XORY360094 XOOORF_4199XOOORF_4199XOOORF_4199XOOORF_4200XOOORF_4201
XORY342109 XOO1047XOO1047XOO1047XOO1046XOO1045
XORY291331 XOO1150XOO1150XOO1150XOO1149XOO1148
XFAS405440 XFASM12_1873XFASM12_1873XFASM12_1873XFASM12_1874XFASM12_0842
XFAS183190 PD_1706PD_1706PD_1706PD_1707PD_0719
XFAS160492 XF0353XF0353XF0353XF0352XF1502
XCAM487884 XCC-B100_3907XCC-B100_0946XCC-B100_0946XCC-B100_0937XCC-B100_0936
XCAM316273 XCAORF_0585XCAORF_3579XCAORF_3579XCAORF_3587XCAORF_3588
XCAM314565 XC_3791XC_0948XC_0948XC_0956XC_0957
XCAM190485 XCC3720XCC3239XCC3239XCC3247XCC3248
XAXO190486 XAC3762XAC3392XAC3392XAC3393XAC3394
VVUL216895 VV1_1463VV1_1463VV1_0852VV1_0851
VVUL196600 VV2922VV2922VV0241VV0242
VPAR223926 VP2656VP2656VP0159VP0160
VFIS312309 VF0404VF0404VF0104VF0105
VCHO345073 VC0395_A2094VC0395_A2094VC0395_A2282VC0395_A2281
VCHO VC2512VC2512VC2710VC2709
TTHE300852 TTHA0137TTHA0137TTHA0137TTHA1717
TTHE262724 TT_C1857TT_C1857TT_C1857TT_C1355
TELO197221 TLL0730TLL0730TLL0730TLL0584
TCRU317025 TCR_2150TCR_2150TCR_2144TCR_2143
STYP99287 STM1549STM4458STM4458STM3742STM3741
STHE322159 STER_0868STER_0868STER_0868STER_0200
STHE299768 STR0824STR0824STR0824STR0145
STHE264199 STU0824STU0824STU0824STU0145
SSP94122 SHEWANA3_3813SHEWANA3_2971SHEWANA3_2971SHEWANA3_3812SHEWANA3_3811
SSP321332 CYB_0559CYB_0559CYB_0559CYB_1543
SSP1148 SLR0318SLR0709SLR0709SLR1325
SSON300269 SSO_4428SSO_4424SSO_3270SSO_3755SSO_3756
SSED425104 SSED_0333SSED_2538SSED_2538SSED_0334SSED_0335
SSAP342451 SSP2259SSP2259SSP2259SSP1125
SPRO399741 SPRO_3089SPRO_0543SPRO_0543SPRO_4869SPRO_4868
SPNE488221 SP70585_1608SP70585_1608SP70585_1608SP70585_1686
SPNE487214 SPH_1681SPH_1681SPH_1681SPH_1753
SPNE487213 SPT_1507SPT_1507SPT_1507SPT_1585
SPNE171101 SPR1425SPR1425SPR1425SPR1487
SPNE170187 SPN05358SPN05358SPN05358SPN13046
SPNE1313 SPJ_1473SPJ_1473SPJ_1473SPJ_1539
SPEA398579 SPEA_3880SPEA_4166SPEA_4166SPEA_3879SPEA_3878
SONE211586 SO_0358SO_1404SO_1404SO_0359SO_0360
SLOI323850 SHEW_3500SHEW_3500SHEW_3499SHEW_3498
SHIGELLA YJGHYJGFYHARSPOTRPOZ
SHAL458817 SHAL_0389SHAL_0077SHAL_0077SHAL_0390SHAL_0391
SHAE279808 SH2514SH2514SH2514SH1287
SGOR29390 SGO_0953SGO_0953SGO_0953SGO_1822
SGLO343509 SG2117SG2117SG2223SG2222
SFLE373384 SFV_4246SFV_4249SFV_3154SFV_3879SFV_3880
SFLE198214 AAN45660.1AAN45665.1AAN44624.1AAN45137.1AAN45136.1
SENT454169 SEHA_C1720SEHA_C4861SEHA_C4861SEHA_C4068SEHA_C4067
SENT321314 SCH_4313SCH_4313SCH_3666SCH_3665
SENT295319 SPA4259SPA4259SPA3594SPA3593
SENT220341 STY4798STY4798STY4050STY4051
SENT209261 T4493T4493T3776T3777
SELO269084 SYC0571_CSYC0571_CSYC0571_CSYC0179_C
SDYS300267 SDY_4266SDY_4262SDY_4262SDY_4082SDY_4081
SDEN318161 SDEN_3436SDEN_3436SDEN_3435SDEN_3434
SBOY300268 SBO_4199SBO_4203SBO_2978SBO_3727SBO_3728
SBAL402882 SHEW185_0350SHEW185_3079SHEW185_3079SHEW185_0351SHEW185_0352
SBAL399599 SBAL195_0357SBAL195_3222SBAL195_3222SBAL195_0358SBAL195_0359
SACI56780 SYN_01814SYN_01814SYN_00904SYN_01280
RSP357808 ROSERS_1494ROSERS_2960ROSERS_2960ROSERS_4122
RCAS383372 RCAS_2625RCAS_1940RCAS_1940RCAS_1219
PSYR223283 PSPTO_2477PSPTO_0072PSPTO_0072PSPTO_0073PSPTO_0074
PSYR205918 PSYR_2243PSYR_0208PSYR_0208PSYR_0209PSYR_0210
PSTU379731 PST_1309PST_0458PST_0458PST_0459PST_0460
PPUT76869 PPUTGB1_5351PPUTGB1_5351PPUTGB1_5351PPUTGB1_5350PPUTGB1_5349
PPUT351746 PPUT_5212PPUT_5212PPUT_5212PPUT_5211PPUT_5210
PPUT160488 PP_5303PP_5303PP_5303PP_5302PP_5301
PPRO298386 PBPRA3031PBPRA0470PBPRA0470PBPRA0189PBPRA0190
PMUL272843 PM1466PM1466PM0920PM0921
PMAR93060 P9215_06391P9215_06391P9215_06391P9215_02091
PMAR74546 PMT9312_0558PMT9312_0558PMT9312_0558PMT9312_0193
PLUM243265 PLU4498PLU4498PLU0272PLU0273
PING357804 PING_3444PING_3444PING_0203PING_3624
PHAL326442 PSHAA2794PSHAA2794PSHAA2793PSHAA2791
PFLU220664 PFL_1693PFL_6064PFL_6064PFL_6063PFL_6062
PFLU216595 PFLU5996PFLU5996PFLU5996PFLU5995PFLU5994
PFLU205922 PFL_2367PFL_5552PFL_5552PFL_5551PFL_5550
PENT384676 PSEEN3861PSEEN5448PSEEN5448PSEEN5447PSEEN5446
PCRY335284 PCRYO_0250PCRYO_2006PCRYO_2006PCRYO_2004
PCAR338963 PCAR_1288PCAR_1288PCAR_1288PCAR_1286
PATL342610 PATL_0350PATL_0350PATL_0349PATL_0348
PARC259536 PSYC_1726PSYC_1726PSYC_1726PSYC_1724
PAER208964 PA4173PA5339PA5339PA5338PA5337
PAER208963 PA14_09920PA14_70480PA14_70480PA14_70470PA14_70450
OIHE221109 OB3060OB3060OB3060OB2024
NSP103690 ALL3869ALL3869ALL3869ALL1549
NOCE323261 NOC_1215NOC_1215NOC_1214NOC_1213
NMEN374833 NMCC_0616NMCC_0616NMCC_0616NMCC_1569NMCC_1570
NMEN272831 NMC0611NMC0611NMC0611NMC1577NMC1578
NMEN122587 NMA0861NMA0861NMA1917NMA1918
NMEN122586 NMB_0662NMB_0662NMB_0662NMB_1659NMB_1660
NGON242231 NGO0232NGO0232NGO0232NGO1308NGO1309
MXAN246197 MXAN_1692MXAN_3205MXAN_3205MXAN_3204MXAN_4890
MSUC221988 MS2189MS2189MS1736MS1737
MSP400668 MMWYL1_4387MMWYL1_4387MMWYL1_4387MMWYL1_4386MMWYL1_4385
MAQU351348 MAQU_0637MAQU_0637MAQU_0637MAQU_0636MAQU_0635
LWEL386043 LWE0837LWE0837LWE0837LWE1536
LMON265669 LMOF2365_0861LMOF2365_0861LMOF2365_0861LMOF2365_1542
LMON169963 LMO0844LMO0844LMO0844LMO1523
LINN272626 LIN0837LIN0837LIN0837LIN1558
KPNE272620 GKPORF_B1629GKPORF_B4015GKPORF_B4015GKPORF_B3359GKPORF_B3358
JSP375286 MMA_1646MMA_0887MMA_0887MMA_1326MMA_1327
HSOM228400 HSM_2012HSM_2012HSM_0548HSM_0547
HSOM205914 HS_0127HS_0127HS_1455HS_1456
HINF71421 HI_0719HI_0719HI_1741HI_1742
HINF374930 CGSHIEE_08530CGSHIEE_08530CGSHIEE_03330CGSHIEE_03325
HINF281310 NTHI0851NTHI0851NTHI2052NTHI2053
HHAL349124 HHAL_0968HHAL_0968HHAL_0969HHAL_0970
HDUC233412 HD_1215HD_1215HD_1924HD_1923
HCHE349521 HCH_06312HCH_06312HCH_06312HCH_06313HCH_06314
HAUR316274 HAUR_0144HAUR_0144HAUR_0144HAUR_4475
GVIO251221 GLL1641GLR4007GLR4007GLR2748
GURA351605 GURA_3159GURA_3159GURA_3160GURA_3161
GSUL243231 GSU_2235GSU_2235GSU_2235GSU_2236GSU_2237
GMET269799 GMET_2324GMET_2324GMET_2324GMET_2325GMET_2326
FTUL458234 FTA_1583FTA_1583FTA_1583FTA_1501FTA_1617
FTUL418136 FTW_1504FTW_1504FTW_1504FTW_0605FTW_1540
FTUL401614 FTN_0639FTN_0639FTN_0639FTN_1198FTN_0613
FTUL393115 FTF1338CFTF1338CFTF1338CFTF0808FTF0703
FTUL393011 FTH_1453FTH_1453FTH_1453FTH_1376FTH_1483
FTUL351581 FTL_1498FTL_1498FTL_1498FTL_1413FTL_1533
FRANT FT.1340CFT.1340CFT.1340CSPOTRPOZ
FPHI484022 FPHI_0193FPHI_0193FPHI_0193FPHI_1489FPHI_0228
ESP42895 ENT638_3519ENT638_0445ENT638_0445ENT638_0089ENT638_0090
EFER585054 EFER_4325EFER_4325EFER_3942EFER_3941
ECOO157 YJGHYJGFYHARSPOTRPOZ
ECOL83334 ECS5225ECS5220ECS3993ECS4525ECS4524
ECOL585397 ECED1_3778ECED1_5098ECED1_3778ECED1_4334ECED1_4333
ECOL585057 ECIAI39_3614ECIAI39_4718ECIAI39_3614ECIAI39_4172ECIAI39_4171
ECOL585056 ECUMN_4779ECUMN_4776ECUMN_3597ECUMN_4166ECUMN_4165
ECOL585055 EC55989_4806EC55989_4803EC55989_3530EC55989_4116EC55989_4115
ECOL585035 ECS88_4836ECS88_4833ECS88_3506ECS88_4065ECS88_4064
ECOL585034 ECIAI1_4478ECIAI1_4475ECIAI1_3262ECIAI1_3822ECIAI1_3821
ECOL481805 ECOLC_3764ECOLC_3768ECOLC_0585ECOLC_0061ECOLC_0062
ECOL469008 ECBD_3787ECBD_3790ECBD_0627ECBD_0075ECBD_0076
ECOL439855 ECSMS35_4728ECSMS35_4724ECSMS35_3409ECSMS35_3985ECSMS35_3984
ECOL413997 ECB_04115ECB_04111ECB_02980ECB_03507ECB_03506
ECOL409438 ECSE_4554ECSE_4550ECSE_3397ECSE_3932ECSE_3931
ECOL405955 APECO1_3311APECO1_2149APECO1_3311APECO1_2811APECO1_2812
ECOL364106 UTI89_C3548UTI89_C4848UTI89_C3548UTI89_C4195UTI89_C4194
ECOL362663 ECP_3206ECP_4493ECP_3206ECP_3748ECP_3747
ECOL331111 ECE24377A_4820ECE24377A_4816ECE24377A_3587ECE24377A_4153ECE24377A_4152
ECOL316407 ECK4242:JW4206:B4248ECK4238:JW5755:B4243ECK3102:JW5521:B3113ECK3640:JW3625:B3650ECK3639:JW3624:B3649
ECOL199310 C3871C5342C3871C4475C4474
ECAR218491 ECA0380ECA0380ECA0038ECA0039
DVUL882 DVU_0620DVU_2203DVU_2203DVU_2083DVU_3242
DRED349161 DRED_2343DRED_0412DRED_2343DRED_0733
DPSY177439 DP1504DP1384DP1504DP1481
DOLE96561 DOLE_0180DOLE_1176DOLE_1176DOLE_2057
DNOD246195 DNO_1019DNO_1019DNO_1019DNO_1021
DHAF138119 DSY4779DSY1335DSY1335DSY2451
DDES207559 DDE_2582DDE_0809DDE_0809DDE_1569DDE_0247
DARO159087 DARO_0355DARO_0355DARO_3843DARO_3844
CSAL290398 CSAL_0759CSAL_3236CSAL_3236CSAL_3235CSAL_3234
CPSY167879 CPS_3498CPS_4974CPS_4974CPS_4973CPS_4972
CPER289380 CPR_1089CPR_1089CPR_1089CPR_1904CPR_1718
CPER195103 CPF_1267CPF_1267CPF_1267CPF_2193CPF_2000
CPER195102 CPE1012CPE1012CPE1012CPE1938CPE1747
CNOV386415 NT01CX_0656NT01CX_0656NT01CX_0656NT01CX_1844
CHYD246194 CHY_2460CHY_2460CHY_2460CHY_2223
CDIF272563 CD2513CD3187CD3187CD2744
CBUR434922 COXBU7E912_1777COXBU7E912_1777COXBU7E912_1778COXBU7E912_1779
CBUR227377 CBU_0304CBU_0304CBU_0303CBU_0302
CBOT536232 CLM_3376CLM_3376CLM_2179CLM_3464
CBOT515621 CLJ_B3238CLJ_B3238CLJ_B2166CLJ_B3324
CBOT498213 CLD_1563CLD_1563CLD_2663CLD_1481
CBOT441772 CLI_3035CLI_3035CLI_2028CLI_3118
CBOT441771 CLC_2878CLC_2878CLC_1906CLC_2961
CBOT441770 CLB_3006CLB_3006CLB_1900CLB_3088
CBOT36826 CBO2981CBO2981CBO1961CBO3059
CBEI290402 CBEI_1979CBEI_1979CBEI_1540CBEI_1142
CACE272562 CAC1265CAC1265CAC2274CAC1719
BSUB BSU00480BSU00480BSU00480BSU27600
BPUM315750 BPUM_0032BPUM_0032BPUM_0032BPUM_2401
BBAC264462 BD1766BD1766BD1766BD1570BD1569
AVAR240292 AVA_1824AVA_1824AVA_1824AVA_4989
ASAL382245 ASA_0286ASA_0286ASA_0034ASA_0035
APLE434271 APJL_0455APJL_0455APJL_1861APJL_1862
APLE416269 APL_0430APL_0430APL_1825APL_1826
AORE350688 CLOS_1743CLOS_1743CLOS_1743CLOS_1714
AMET293826 AMET_2316AMET_2316AMET_2316AMET_2353
AMAR329726 AM1_B0043AM1_3300AM1_3300AM1_2514
AHYD196024 AHA_4025AHA_4025AHA_0039AHA_0040
AEHR187272 MLG_2441MLG_2441MLG_2441MLG_2442MLG_2443
ADEH290397 ADEH_2881ADEH_2549ADEH_2549ADEH_2550ADEH_3590


Organism features enriched in list (features available for 187 out of the 195 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000074153112
Arrangment:Singles 0.0011026108286
Disease:Botulism 0.003272855
Disease:Bubonic_plague 0.001030566
Disease:Dysentery 0.001030566
Disease:Gastroenteritis 0.00091851013
Disease:Tularemia 0.003272855
Endospores:No 6.485e-742211
GC_Content_Range4:0-40 0.000027247213
GC_Content_Range4:40-60 8.600e-13111224
GC_Content_Range4:60-100 0.000097429145
GC_Content_Range7:30-40 0.000101135166
GC_Content_Range7:40-50 0.003742949117
GC_Content_Range7:50-60 5.543e-1062107
GC_Content_Range7:60-70 0.000478828134
Genome_Size_Range5:0-2 1.143e-1118155
Genome_Size_Range5:4-6 3.092e-1194184
Genome_Size_Range9:1-2 1.307e-718128
Genome_Size_Range9:4-5 4.334e-65096
Genome_Size_Range9:5-6 0.00006884488
Gram_Stain:Gram_Neg 2.119e-8137333
Gram_Stain:Gram_Pos 0.000154831150
Habitat:Host-associated 0.003817153206
Habitat:Multiple 0.000013079178
Motility:No 0.000024029151
Motility:Yes 5.948e-6110267
Optimal_temp.:35-37 0.0050698913
Oxygen_Req:Aerobic 0.007268948185
Oxygen_Req:Facultative 1.820e-792201
Pathogenic_in:No 0.000762956226
Pathogenic_in:Plant 0.00458101015
Shape:Rod 2.942e-10145347
Shape:Spiral 0.0001782234
Temp._range:Hyperthermophilic 0.0012746123
Temp._range:Psychrophilic 0.000031499



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 183
Effective number of orgs (counting one per cluster within 468 clusters): 150

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSP387093 ncbi Sulfurovum sp. NBC37-11
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMAR399550 ncbi Staphylothermus marinus F10
SCO ncbi Streptomyces coelicolor A3(2)1
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP117 Pirellula sp.0
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PAST100379 Onion yellows phytoplasma0
PACN267747 ncbi Propionibacterium acnes KPA1712021
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NHAM323097 ncbi Nitrobacter hamburgensis X141
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP266779 ncbi Chelativorans sp. BNC11
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
GOXY290633 ncbi Gluconobacter oxydans 621H1
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CJEI306537 ncbi Corynebacterium jeikeium K4111
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7879   G7877   G7626   EG10966   EG10899   
XAUT78245 XAUT_3837
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPAL243276
TKOD69014
TFUS269800 TFU_2090
TACI273075
SWOL335541 SWOL_0806
STHE292459 STH2437
SSP387093 SUN_1785
SPYO370554 MGAS10750_SPY1780
SPYO370553 MGAS2096_SPY1709
SPYO370552 MGAS10270_SPY1755
SPYO370551 MGAS9429_SPY1689
SPYO319701 M28_SPY1674
SPYO293653 M5005_SPY1686
SPYO286636 M6_SPY1694
SPYO198466 SPYM3_1701
SPYO193567 SPS1702
SPYO186103 SPYM18_2045
SPYO160490 SPY1981
SMAR399550
SCO SCO6478
SARE391037 SARE_1805
SAGA211110 GBS1928
SAGA208435 SAG_1940
SAGA205921 SAK_1900
RXYL266117 RXYL_1338
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_2607
RPAL316057 RPD_2646
RPAL316055 RPE_3027
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_0685
RAKA293614
PTOR263820
PTHE370438 PTH_1045
PSP117
PPEN278197 PEPE_1120
PMAR74547 PMT2111
PMAR167539 PRO_0217
PLUT319225
PAST100379
PACN267747 PPA1166
OTSU357244
OCAR504832 OCAR_5837
NWIN323098 NWI_1923
NSP35761 NOCA_2392
NSEN222891
NHAM323097 NHAM_2256
MTUB419947 MRA_2612
MTUB336982 TBFG_12603
MTHE349307
MTHE187420
MTBRV RV2583C
MTBCDC MT2660
MSYN262723
MSTA339860
MSP266779 MESO_0945
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR267377
MLEP272631 ML0491
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_3812
MGEN243273
MFLO265311
MBUR259564
MBOV410289 BCG_2606C
MBOV233413 MB2614C
MBAR269797
MAVI243243 MAV_3464
MART243272
MAEO419665
MACE188937
LXYL281090 LXX10830
LREU557436 LREU_0721
LPNE272624 LPG2009
LPLA220668 LP_1987
LJOH257314 LJ_1394
LINT363253 LI0170
LINT267671 LIC_11012
LINT189518 LA3084
LHEL405566 LHV_1011
LGAS324831 LGAS_0857
LDEL390333 LDB0885
LDEL321956 LBUL_0810
LCAS321967 LSEI_1539
LBRE387344 LVIS_0728
LBOR355277 LBJ_0842
LBOR355276 LBL_2240
LBIF456481
LBIF355278
LACI272621 LBA0932
KRAD266940 KRAD_3048
IHOS453591
HWAL362976 HQ1769A
HMOD498761 HM1_1843
HHEP235279 HH_1693
GOXY290633 GOX1807
GBET391165 GBCGDNIH1_0988
FSUC59374
FSP1855
FSP106370
FNOD381764
FALN326424
ERUM302409 ERGA_CDS_02990
ERUM254945 ERWE_CDS_03050
ELIT314225 ELI_10980
ECHA205920 ECH_0796
ECAN269484 ECAJ_0280
DSHI398580 DSHI_0193
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_1194
CMUR243161
CMIC443906 CMM_1809
CMIC31964 CMS0723
CMET456442
CMAQ397948 CMAQ_0031
CJEI306537 JK1048
CFEL264202
CEFF196164 CE1767
CDIP257309 DIP1368
CDES477974 DAUD_0901
CCHL340177
CCAV227941
CAULO CC1552
CABO218497
BXEN266265
BTUR314724
BTRI382640 BT_0780
BQUI283165 BQ04220
BLON206672 BL1439
BHER314723
BHEN283166 BH05030
BGAR290434
BBUR224326
BBAC360095 BARBAKC583_0467
BAPH372461
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2297
APHA212042
AMAR234826
ALAI441768
AFUL224325


Organism features enriched in list (features available for 172 out of the 183 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 3.436e-811112
Disease:Leptospirosis 0.007390344
Disease:Pharyngitis 0.000051188
Disease:Wide_range_of_infections 1.169e-61111
Disease:bronchitis_and_pneumonitis 0.000051188
Endospores:No 1.474e-892211
Endospores:Yes 0.0002051553
GC_Content_Range4:0-40 6.496e-686213
GC_Content_Range4:40-60 0.000225748224
GC_Content_Range7:0-30 0.00022932547
GC_Content_Range7:30-40 0.004481861166
GC_Content_Range7:50-60 0.000025015107
Genome_Size_Range5:0-2 5.540e-2294155
Genome_Size_Range5:4-6 1.060e-1023184
Genome_Size_Range5:6-10 0.0000527347
Genome_Size_Range9:0-1 1.351e-82227
Genome_Size_Range9:1-2 3.328e-1372128
Genome_Size_Range9:4-5 0.00033181596
Genome_Size_Range9:5-6 5.985e-7888
Genome_Size_Range9:6-8 0.0000174138
Gram_Stain:Gram_Neg 8.812e-675333
Habitat:Host-associated 8.853e-1093206
Habitat:Multiple 0.000166535178
Motility:No 0.000070663151
Motility:Yes 5.824e-850267
Optimal_temp.:37 0.004202642106
Optimal_temp.:60 0.007390344
Shape:Irregular_coccus 0.00197081117
Shape:Rod 0.000128383347
Shape:Sphere 0.00005841419



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5386 (methylglyoxal degradation I)3051550.4122



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7877   G7626   EG10966   EG10899   
G78790.9997160.999710.9986840.998902
G78770.9999820.9985360.998871
G76260.9987990.999052
EG109660.999907
EG10899



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PAIRWISE BLAST SCORES:

  G7879   G7877   G7626   EG10966   EG10899   
G78790.0f0-5.8e-7--
G7877-0.0f01.7e-46--
G7626-1.7e-460.0f0--
EG10966---0.0f0-
EG10899----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10899 EG10966 (centered at EG10966)
G7626 (centered at G7626)
G7877 (centered at G7877)
G7879 (centered at G7879)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7879   G7877   G7626   EG10966   EG10899   
285/623320/623316/623411/623266/623
AAEO224324:0:Tyes0--335-
AAUR290340:2:Tyes0--1516-
AAVE397945:0:Tyes---10
ABAC204669:0:Tyes-001-
ABAU360910:0:Tyes0--690689
ABOR393595:0:Tyes0--12
ABUT367737:0:Tyes-00--
ACAU438753:0:Tyes0--17971039
ACEL351607:0:Tyes0--452-
ACRY349163:8:Tyes---10
ADEH290397:0:Tyes3390011054
AEHR187272:0:Tyes00012
AFER243159:0:Tyes-0-12
AHYD196024:0:Tyes-3837383701
AMAR329726:7:Tyes0----
AMAR329726:9:Tyes-7797790-
AMET293826:0:Tyes00035-
ANAE240017:0:Tyes000--
AORE350688:0:Tyes3030300-
APER272557:0:Tyes000--
APLE416269:0:Tyes-0014361437
APLE434271:0:Tno-0014361437
ASAL382245:5:Tyes-24224201
ASP1667:3:Tyes---0-
ASP232721:2:Tyes---10
ASP62928:0:Tyes0--35323533
ASP62977:0:Tyes2---0
ASP76114:1:Tyes0----
ASP76114:2:Tyes---10
AVAR240292:3:Tyes0003173-
BABO262698:0:Tno0----
BABO262698:1:Tno----0
BAMB339670:1:Tno0----
BAMB339670:3:Tno---10
BAMB398577:1:Tno0----
BAMB398577:3:Tno---10
BAMY326423:0:Tyes-002409-
BANT260799:0:Tno-004300-
BANT261594:2:Tno-004229-
BANT568206:2:Tyes-004464-
BANT592021:2:Tno-004454-
BAPH198804:0:Tyes-00--
BBAC264462:0:Tyes18518518510
BBAC360095:0:Tyes----0
BBRO257310:0:Tyes0--25222521
BCAN483179:0:Tno0----
BCAN483179:1:Tno----0
BCEN331271:1:Tno0----
BCEN331271:2:Tno---10
BCEN331272:2:Tyes0----
BCEN331272:3:Tyes---10
BCER226900:1:Tyes-004264-
BCER288681:0:Tno-004163-
BCER315749:1:Tyes-002930-
BCER405917:1:Tyes-004215-
BCER572264:1:Tno-004288-
BCIC186490:0:Tyes-128128-0
BCLA66692:0:Tyes-001543-
BFRA272559:1:Tyes-00--
BFRA295405:0:Tno-00--
BHAL272558:0:Tyes-001250-
BHEN283166:0:Tyes----0
BJAP224911:0:Fyes0--181182
BLIC279010:0:Tyes-002744-
BLON206672:0:Tyes---0-
BMAL243160:1:Tno---01
BMAL320388:0:Tno0----
BMAL320388:1:Tno---10
BMAL320389:0:Tyes0----
BMAL320389:1:Tyes---01
BMEL224914:0:Tno0----
BMEL224914:1:Tno----0
BMEL359391:0:Tno0----
BMEL359391:1:Tno----0
BOVI236:0:Tyes0----
BOVI236:1:Tyes----0
BPAR257311:0:Tno0--24122411
BPER257313:0:Tyes0--10281029
BPET94624:0:Tyes0--856857
BPSE272560:0:Tyes0----
BPSE272560:1:Tyes---01
BPSE320372:0:Tno0----
BPSE320372:1:Tno---01
BPSE320373:0:Tno0----
BPSE320373:1:Tno---01
BPUM315750:0:Tyes0002393-
BQUI283165:0:Tyes----0
BSP107806:2:Tyes-00--
BSP36773:2:Tyes1187--10
BSP376:0:Tyes96--01
BSUB:0:Tyes0002887-
BSUI204722:0:Tyes0----
BSUI204722:1:Tyes----0
BSUI470137:0:Tno0----
BSUI470137:1:Tno----0
BTHA271848:0:Tno0----
BTHA271848:1:Tno---10
BTHE226186:0:Tyes-00--
BTHU281309:1:Tno-004057-
BTHU412694:1:Tno-003817-
BTRI382640:1:Tyes----0
BVIE269482:5:Tyes0----
BVIE269482:7:Tyes---10
BWEI315730:4:Tyes-004209-
CACE272562:1:Tyes-00995449
CAULO:0:Tyes----0
CBEI290402:0:Tyes-8258253920
CBLO203907:0:Tyes-00--
CBLO291272:0:Tno-00-600
CBOT36826:1:Tno1023102301101-
CBOT441770:0:Tyes1083108301163-
CBOT441771:0:Tno94394301021-
CBOT441772:1:Tno97597501055-
CBOT498213:1:Tno1090109001170-
CBOT508765:1:Tyes-00396-
CBOT515621:2:Tyes1053105301135-
CBOT536232:0:Tno1160116001244-
CBUR227377:1:Tyes2-210
CBUR360115:1:Tno--210
CBUR434922:2:Tno0-012
CCON360104:2:Tyes000--
CCUR360105:0:Tyes000--
CDES477974:0:Tyes---0-
CDIF272563:1:Tyes0679679232-
CDIP257309:0:Tyes---0-
CEFF196164:0:Fyes---0-
CFET360106:0:Tyes000--
CGLU196627:0:Tyes0--1518-
CHOM360107:1:Tyes-00--
CHUT269798:0:Tyes-00--
CHYD246194:0:Tyes2182182180-
CJAP155077:0:Tyes2--10
CJEI306537:0:Tyes---0-
CJEJ192222:0:Tyes000--
CJEJ195099:0:Tno000--
CJEJ354242:2:Tyes000--
CJEJ360109:0:Tyes000--
CJEJ407148:0:Tno000--
CKLU431943:1:Tyes-002226-
CKOR374847:0:Tyes000--
CMAQ397948:0:Tyes0----
CMIC31964:2:Tyes---0-
CMIC443906:2:Tyes---0-
CNOV386415:0:Tyes1205120512050-
CPEL335992:0:Tyes----0
CPER195102:1:Tyes000932736
CPER195103:0:Tno000905721
CPER289380:3:Tyes000802621
CPHY357809:0:Tyes-935-0-
CPSY167879:0:Tyes01441144114401439
CRUT413404:0:Tyes---1020
CSAL290398:0:Tyes02522252225212520
CSP501479:8:Fyes---10
CSP78:2:Tyes1463---0
CTET212717:0:Tyes-001806-
CVES412965:0:Tyes---920
CVIO243365:0:Tyes0--29232924
DARO159087:0:Tyes00-35133514
DDES207559:0:Tyes237156756713370
DETH243164:0:Tyes1007--0-
DGEO319795:1:Tyes000--
DHAF138119:0:Tyes3480001142-
DNOD246195:0:Tyes000-2
DOLE96561:0:Tyes0100910091898-
DPSY177439:2:Tyes1230123-100
DRAD243230:3:Tyes000--
DRED349161:0:Tyes193101931323-
DSHI398580:5:Tyes----0
DSP216389:0:Tyes949--0-
DSP255470:0:Tno881--0-
DVUL882:1:Tyes01574157414542609
ECAN269484:0:Tyes----0
ECAR218491:0:Tyes-35535501
ECHA205920:0:Tyes----0
ECOL199310:0:Tno014510599598
ECOL316407:0:Tno112711230513514
ECOL331111:6:Tno118311790551550
ECOL362663:0:Tno012710537536
ECOL364106:1:Tno012840640639
ECOL405955:2:Tyes012020514513
ECOL409438:6:Tyes119811940544543
ECOL413997:0:Tno116111570531530
ECOL439855:4:Tno126712630563562
ECOL469008:0:Tno3696369955201
ECOL481805:0:Tno3712371652601
ECOL585034:0:Tno117611720549548
ECOL585035:0:Tno127212680546545
ECOL585055:0:Tno124412400571570
ECOL585056:2:Tno117511710564563
ECOL585057:0:Tno011000550549
ECOL585397:0:Tno012770538537
ECOL83334:0:Tno127712720543542
ECOLI:0:Tno115111470544543
ECOO157:0:Tno124712410561560
EFAE226185:3:Tyes-5655650-
EFER585054:1:Tyes-37737710
ELIT314225:0:Tyes----0
ERUM254945:0:Tyes----0
ERUM302409:0:Tno----0
ESP42895:1:Tyes346736436401
FJOH376686:0:Tyes-00--
FMAG334413:1:Tyes--0472-
FNUC190304:0:Tyes-001638-
FPHI484022:1:Tyes000134734
FRANT:0:Tno5945945941030
FTUL351581:0:Tno8585850115
FTUL393011:0:Tno656565089
FTUL393115:0:Tyes5845845841030
FTUL401614:0:Tyes2525255800
FTUL418136:0:Tno7307307300756
FTUL458234:0:Tno7676760102
GBET391165:0:Tyes----0
GFOR411154:0:Tyes000--
GKAU235909:1:Tyes-002623-
GMET269799:1:Tyes00012
GOXY290633:5:Tyes---0-
GSUL243231:0:Tyes00012
GTHE420246:1:Tyes-002426-
GURA351605:0:Tyes-0012
GVIO251221:0:Tyes0239423941120-
HACI382638:1:Tyes-00--
HARS204773:0:Tyes---10
HAUR316274:2:Tyes0004368-
HBUT415426:0:Tyes000--
HCHE349521:0:Tyes00012
HDUC233412:0:Tyes-00608607
HHAL349124:0:Tyes0-012
HHEP235279:0:Tyes-0---
HINF281310:0:Tyes-0010671068
HINF374930:0:Tyes-91491410
HINF71421:0:Tno-0010061007
HMAR272569:7:Tyes9200--
HMOD498761:0:Tyes---0-
HMUK485914:1:Tyes000--
HNEP81032:0:Tyes1477---0
HPY:0:Tno-00--
HPYL357544:1:Tyes-00--
HPYL85963:0:Tno-00--
HSAL478009:4:Tyes000--
HSOM205914:1:Tyes-0013361337
HSOM228400:0:Tno-1483148310
HSP64091:2:Tno000--
HWAL362976:1:Tyes-0---
ILOI283942:0:Tyes0--806807
JSP290400:1:Tyes599--10
JSP375286:0:Tyes77600444445
KPNE272620:2:Tyes02322232216971696
KRAD266940:2:Fyes---0-
LACI272621:0:Tyes---0-
LBOR355276:1:Tyes---0-
LBOR355277:1:Tno---0-
LBRE387344:2:Tyes---0-
LCAS321967:1:Tyes---0-
LCHO395495:0:Tyes---10
LDEL321956:0:Tyes---0-
LDEL390333:0:Tyes---0-
LGAS324831:0:Tyes---0-
LHEL405566:0:Tyes---0-
LINN272626:1:Tno000720-
LINT189518:1:Tyes---0-
LINT267671:1:Tno---0-
LINT363253:3:Tyes---0-
LJOH257314:0:Tyes---0-
LLAC272622:5:Tyes-1144-0-
LLAC272623:0:Tyes-112311230-
LMES203120:1:Tyes--5660-
LMON169963:0:Tno000684-
LMON265669:0:Tyes000677-
LPLA220668:0:Tyes---0-
LPNE272624:0:Tno---0-
LPNE297245:1:Fno--012
LPNE297246:1:Fyes---01
LPNE400673:0:Tno---01
LREU557436:0:Tyes---0-
LSAK314315:0:Tyes0--303-
LSPH444177:1:Tyes-003735-
LWEL386043:0:Tyes000699-
LXYL281090:0:Tyes---0-
MABS561007:1:Tyes33--0-
MAER449447:0:Tyes-004242-
MAQU351348:2:Tyes22210
MAVI243243:0:Tyes---0-
MBOV233413:0:Tno---0-
MBOV410289:0:Tno---0-
MCAP243233:0:Tyes2--10
MCAP340047:0:Tyes-00--
MEXT419610:0:Tyes0--20912092
MFLA265072:0:Tyes2--10
MGIL350054:3:Tyes---0-
MLEP272631:0:Tyes---0-
MLOT266835:2:Tyes0---2404
MMAG342108:0:Tyes---10
MMAR368407:0:Tyes00---
MMAR394221:0:Tyes245---0
MMYC272632:0:Tyes-00--
MPET420662:1:Tyes---50
MSME246196:0:Tyes2732--0-
MSP164756:1:Tno1960--0-
MSP164757:0:Tno2285--0-
MSP189918:2:Tyes1980--0-
MSP266779:3:Tyes----0
MSP400668:0:Tyes22210
MSP409:2:Tyes---10
MSUC221988:0:Tyes-46146101
MTBCDC:0:Tno---0-
MTBRV:0:Tno---0-
MTHE264732:0:Tyes-00178-
MTUB336982:0:Tno---0-
MTUB419947:0:Tyes---0-
MVAN350058:0:Tyes0--1414-
MXAN246197:0:Tyes01448144814473075
NARO279238:0:Tyes2997--24230
NEUR228410:0:Tyes---01920
NEUT335283:2:Tyes---9760
NFAR247156:2:Tyes0--1060-
NGON242231:0:Tyes000975976
NHAM323097:2:Tyes----0
NMEN122586:0:Tno000959960
NMEN122587:0:Tyes00-10021003
NMEN272831:0:Tno000831832
NMEN374833:0:Tno000942943
NMUL323848:3:Tyes829--01
NOCE323261:1:Tyes22-10
NPHA348780:2:Tyes00---
NSP103690:6:Tyes2349234923490-
NSP35761:1:Tyes---0-
NSP387092:0:Tyes-00--
NWIN323098:0:Tyes----0
OANT439375:4:Tyes0----
OANT439375:5:Tyes---01
OCAR504832:0:Tyes----0
OIHE221109:0:Tyes1042104210420-
PABY272844:0:Tyes000--
PACN267747:0:Tyes---0-
PAER178306:0:Tyes000--
PAER208963:0:Tyes04927492749264925
PAER208964:0:Tno01191119111901189
PARC259536:0:Tyes222-0
PARS340102:0:Tyes000--
PATL342610:0:Tyes2-210
PCAR338963:0:Tyes222-0
PCRY335284:1:Tyes017491749-1747
PDIS435591:0:Tyes000--
PENT384676:0:Tyes01505150515041503
PFLU205922:0:Tyes03221322132203219
PFLU216595:1:Tyes22210
PFLU220664:0:Tyes04294429442934292
PFUR186497:0:Tyes000--
PGIN242619:0:Tyes-00--
PHAL326442:1:Tyes2-210
PHOR70601:0:Tyes000--
PING357804:0:Tyes-3061306103240
PINT246198:0:Tyes-00--
PISL384616:0:Tyes000--
PLUM243265:0:Fyes-4292429201
PMAR146891:0:Tyes-404-0-
PMAR167539:0:Tyes---0-
PMAR167540:0:Tyes-380-0-
PMAR167542:0:Tyes-00--
PMAR167546:0:Tyes000--
PMAR167555:0:Tyes-358-0-
PMAR59920:0:Tno-3413410-
PMAR74546:0:Tyes3753753750-
PMAR74547:0:Tyes---0-
PMAR93060:0:Tyes4414414410-
PMEN399739:0:Tyes0--23992398
PMOB403833:0:Tyes000--
PMUL272843:1:Tyes-54654601
PNAP365044:8:Tyes---01
PPEN278197:0:Tyes---0-
PPRO298386:2:Tyes283428128101
PPUT160488:0:Tno22210
PPUT351746:0:Tyes22210
PPUT76869:0:Tno22210
PRUM264731:0:Tyes000--
PSP296591:2:Tyes3452--01
PSP312153:0:Tyes---01
PSP56811:2:Tyes3670--2
PSTU379731:0:Tyes8500012
PSYR205918:0:Tyes20380012
PSYR223283:2:Tyes23850012
PTHE370438:0:Tyes---0-
RALB246199:0:Tyes-0---
RCAS383372:0:Tyes13967237230-
RDEN375451:4:Tyes---10
RETL347834:5:Tyes0---774
REUT264198:1:Tyes0----
REUT264198:3:Tyes---01
REUT381666:2:Tyes0--120119
RFER338969:1:Tyes0--22142213
RLEG216596:6:Tyes0---338
RMET266264:1:Tyes0----
RMET266264:2:Tyes---10
RPAL258594:0:Tyes0---203
RPAL316055:0:Tyes----0
RPAL316056:0:Tyes---10
RPAL316057:0:Tyes----0
RPAL316058:0:Tyes----0
RPOM246200:1:Tyes0--488489
RRUB269796:1:Tyes0--145146
RSAL288705:0:Tyes94--0-
RSOL267608:0:Tyes0----
RSOL267608:1:Tyes---01
RSP101510:3:Fyes0--1593-
RSP357808:0:Tyes0145014502606-
RSPH272943:4:Tyes---10
RSPH349101:2:Tno---10
RSPH349102:5:Tyes---01
RXYL266117:0:Tyes---0-
SACI330779:0:Tyes-00--
SACI56780:0:Tyes-2468246813580
SAGA205921:0:Tno---0-
SAGA208435:0:Tno---0-
SAGA211110:0:Tyes---0-
SALA317655:1:Tyes0---1483
SARE391037:0:Tyes---0-
SAUR158878:1:Tno-001153-
SAUR158879:1:Tno-001058-
SAUR196620:0:Tno-001153-
SAUR273036:0:Tno-001041-
SAUR282458:0:Tno-001181-
SAUR282459:0:Tno-001135-
SAUR359786:1:Tno-001179-
SAUR359787:1:Tno-001181-
SAUR367830:3:Tno-001101-
SAUR418127:0:Tyes-001145-
SAUR426430:0:Tno-001094-
SAUR93061:0:Fno-001214-
SAUR93062:1:Tno-001121-
SAVE227882:1:Fyes0--3629-
SBAL399599:3:Tyes02930293012
SBAL402882:1:Tno02774277412
SBOY300268:1:Tyes116011640719720
SCO:2:Fyes0----
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