CANDIDATE ID: 579

CANDIDATE ID: 579

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9896030e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6992 (yoaA) (b1808)
   Products of gene:
     - G6992-MONOMER (conserved protein)

- G6991 (yeaZ) (b1807)
   Products of gene:
     - G6991-MONOMER (protease specific for YgjD)
     - CPLX0-7799 (protease specific for YgjD)
       Reactions:
        YgjD, target for YeaZ protease  ->  YgjD degradation products

- G6990 (yeaY) (b1806)
   Products of gene:
     - G6990-MONOMER (predicted lipoprotein)

- EG11530 (fadD) (b1805)
   Products of gene:
     - ACYLCOASYN-MONOMER (FadD)
     - ACYLCOASYN-CPLX (fatty acyl-CoA synthetase)
       Reactions:
        a fatty acid + ATP + coenzyme A  =  a 2,3,4-saturated fatty acyl CoA + diphosphate + AMP + H+
         In pathways
         PWY-5972 (PWY-5972)
         PWY-561 (PWY-561)
         FAO-PWY (fatty acid β-oxidation I)
         PWY-5136 (PWY-5136)

- EG10858 (rnd) (b1804)
   Products of gene:
     - EG10858-MONOMER (RNase D)
       Reactions:
        a tRNA precursor with a short 3' extension  ->  an uncharged tRNA + n a nucleoside-5'-phosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        a tRNA precursor with a 5' extension and a short 3' extension  ->  a tRNA precursor with a 5' extension + n a nucleoside-5'-phosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        a tRNA precursor  =  a tRNA + a nucleoside-5'-phosphate



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 128
Effective number of orgs (counting one per cluster within 468 clusters): 80

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79014
TFUS269800 ncbi Thermobifida fusca YX4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SALA317655 ncbi Sphingopyxis alaskensis RB22564
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSP101510 ncbi Rhodococcus jostii RHA14
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
NSP35761 Nocardioides sp.4
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL14
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL14
HCHE349521 ncbi Hahella chejuensis KCTC 23964
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus4
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CEFF196164 ncbi Corynebacterium efficiens YS-3144
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131294
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14


Names of the homologs of the genes in the group in each of these orgs
  G6992   G6991   G6990   EG11530   EG10858   
YPSE349747 YPSIP31758_2017YPSIP31758_2016YPSIP31758_2015YPSIP31758_2014YPSIP31758_2013
YPSE273123 YPTB2054YPTB2055YPTB2056YPTB2057YPTB2058
YPES386656 YPDSF_1051YPDSF_1050YPDSF_1047YPDSF_1046
YPES377628 YPN_1548YPN_1549YPN_1550YPN_1551YPN_1552
YPES360102 YPA_1454YPA_1455YPA_1456YPA_1457YPA_1458
YPES349746 YPANGOLA_A2406YPANGOLA_A2405YPANGOLA_A2404YPANGOLA_A2403YPANGOLA_A2402
YPES214092 YPO2071YPO2072YPO2073YPO2074YPO2075
YPES187410 Y2239Y2238Y2237Y2236Y2235
YENT393305 YE2378YE2377YE2376YE2375YE2374
XORY360094 XOOORF_3267XOOORF_3266XOOORF_4276XOOORF_1811XOOORF_1969
XORY342109 XOO1642XOO1643XOO0968XOO2722XOO2586
XORY291331 XOO1741XOO1742XOO1068XOO2868XOO2742
XFAS405440 XFASM12_1967XFASM12_0872XFASM12_0252XFASM12_2088
XFAS183190 PD_1798PD_0748PD_1055PD_0233PD_1904
XFAS160492 XF0882XF1533XF1811XF0287XF0751
XCAM487884 XCC-B100_1222XCC-B100_1225XCC-B100_3355XCC-B100_2146XCC-B100_1872
XCAM316273 XCAORF_3301XCAORF_3299XCAORF_1205XCAORF_2111XCAORF_2578
XCAM314565 XC_1178XC_1179XC_3240XC_2331XC_1809
XCAM190485 XCC2930XCC2929XCC1005XCC1858XCC2306
XAXO190486 XAC3107XAC3106XAC1113XAC1880XAC2413
VVUL216895 VV1_0141VV1_0140VV1_0138VV1_0136VV1_0135
VVUL196600 VV1048VV1049VV1051VV1053VV1054
VPAR223926 VP0865VP0866VP0868VP0870VP0871
VFIS312309 VF1713VF1712VF1710VF1708VF1707
VCHO345073 VC0395_A1575VC0395_A1574VC0395_A1572VC0395_A1570VC0395_A1569
VCHO VC1990VC1989VC1987VC1985VC1984
TTUR377629 TERTU_2961TERTU_1198TERTU_1891TERTU_2739
TFUS269800 TFU_2167TFU_2604TFU_2158TFU_1901
STYP99287 STM1821STM1820STM1819STM1818STM1817
SSP94122 SHEWANA3_1859SHEWANA3_2391SHEWANA3_3231SHEWANA3_2385
SSON300269 SSO_1353SSO_1354SSO_1355SSO_1356SSO_1357
SSED425104 SSED_2535SSED_2528SSED_2523SSED_2522
SPRO399741 SPRO_2763SPRO_2762SPRO_2761SPRO_2760SPRO_2759
SPEA398579 SPEA_2455SPEA_2453SPEA_2448SPEA_2447
SONE211586 SO_2081SO_2586SO_2581SO_2580
SLOI323850 SHEW_2196SHEW_2193SHEW_2188SHEW_2187
SHIGELLA S1535YEAZS1537FADDRND
SHAL458817 SHAL_1825SHAL_1827SHAL_1832SHAL_1833
SFUM335543 SFUM_2677SFUM_1786SFUM_0108SFUM_0414
SFLE373384 SFV_1421SFV_1422SFV_1423SFV_1424SFV_1425
SFLE198214 AAN43021.1AAN43022.1AAN43023.1AAN43024.1AAN43025.1
SERY405948 SACE_1196SACE_6725SACE_3409SACE_1832
SENT454169 SEHA_C2022SEHA_C2021SEHA_C2020SEHA_C2018SEHA_C2016
SENT321314 SCH_1815SCH_1814SCH_1813SCH_1811SCH_1810
SENT295319 SPA1052SPA1053SPA1054SPA1055SPA1056
SENT220341 STY1951STY1950STY1949STY1948STY1947
SENT209261 T1056T1057T1058T1059T1060
SDYS300267 SDY_1712SDY_1711SDY_1710SDY_1709SDY_1708
SDEN318161 SDEN_1619SDEN_1620SDEN_1625SDEN_1626
SDEG203122 SDE_2381SDE_2233SDE_1886SDE_1338
SBOY300268 SBO_1280SBO_1281SBO_1282SBO_1283SBO_1284
SBAL402882 SHEW185_2413SHEW185_1886SHEW185_1891SHEW185_1892
SBAL399599 SBAL195_2532SBAL195_1893SBAL195_1898SBAL195_1899
SAVE227882 SAV2464SAV4972SAV377SAV2231
SALA317655 SALA_1414SALA_2069SALA_0169SALA_1752
SACI56780 SYN_00483SYN_00736SYN_02640SYN_02700
RSP101510 RHA1_RO01444RHA1_RO06183RHA1_RO01496RHA1_RO06854
PSYR223283 PSPTO_4120PSPTO_1510PSPTO_4098PSPTO_3922
PSYR205918 PSYR_3856PSYR_1320PSYR_3836PSYR_1563
PSTU379731 PST_1523PST_2743PST_2961PST_1363
PPUT76869 PPUTGB1_4290PPUTGB1_1112PPUTGB1_4057PPUTGB1_4121
PPUT351746 PPUT_1161PPUT_4215PPUT_1340PPUT_1297
PPUT160488 PP_1125PP_1507PP_4550PP_4591
PPRO298386 PBPRA1070PBPRA1071PBPRA1073PBPRA1075PBPRA1076
PMUL272843 PM0710PM0709PM0708PM0707PM0706
PMEN399739 PMEN_1427PMEN_3357PMEN_1496PMEN_1773
PLUM243265 PLU2129PLU2132PLU2133PLU2134PLU2135
PING357804 PING_2302PING_2301PING_1014PING_1668
PHAL326442 PSHAB0497PSHAB0498PSHAB0502PSHAB0503
PFLU220664 PFL_1279PFL_1149PFL_4599PFL_1495
PFLU216595 PFLU1324PFLU1241PFLU4830PFLU1516
PFLU205922 PFL_1225PFL_1071PFL_4354PFL_1388
PENT384676 PSEEN1273PSEEN1266PSEEN3975PSEEN4035
PATL342610 PATL_2809PATL_2808PATL_2806PATL_2804PATL_2803
PAER208964 PA1045PA3685PA3300PA1294
PAER208963 PA14_50840PA14_16710PA14_21370PA14_47460
NSP35761 NOCA_3824NOCA_3663NOCA_2616NOCA_3676
MSUC221988 MS1361MS1360MS1359MS1358MS1357
MSP400668 MMWYL1_2118MMWYL1_1257MMWYL1_1573MMWYL1_2531
MCAP243233 MCA_1991MCA_2210MCA_2184MCA_2378
MAQU351348 MAQU_1585MAQU_2231MAQU_1593MAQU_1610
KPNE272620 GKPORF_B1478GKPORF_B1477GKPORF_B1476GKPORF_B1475GKPORF_B1474
ILOI283942 IL1832IL1831IL1829IL1827IL1826
HSOM228400 HSM_1200HSM_1201HSM_1202HSM_1203
HSOM205914 HS_0733HS_0734HS_0735HS_0736
HINF71421 HI_0387HI_0388HI_0389HI_0390.1HI_0390
HINF374930 CGSHIEE_01065CGSHIEE_01060CGSHIEE_01055CGSHIEE_01050CGSHIEE_01045
HINF281310 NTHI0507NTHI0508NTHI0509NTHI0510NTHI0511
HHAL349124 HHAL_0532HHAL_1731HHAL_2173HHAL_2209
HCHE349521 HCH_02654HCH_01815HCH_02646HCH_02616
GURA351605 GURA_4122GURA_3725GURA_2057GURA_4287
GSUL243231 GSU_0363GSU_1913GSU_0543GSU_0443
GMET269799 GMET_3167GMET_1258GMET_1429GMET_3389
ESP42895 ENT638_2378ENT638_2377ENT638_2376ENT638_2375ENT638_2374
EFER585054 EFER_1272EFER_1273EFER_1274EFER_1275EFER_1276
ECOO157 Z2851YEAZZ2849FADDRND
ECOL83334 ECS2517ECS2516ECS2515ECS2514ECS2513
ECOL585397 ECED1_2011ECED1_2010ECED1_2009ECED1_2008ECED1_2007
ECOL585057 ECIAI39_1245ECIAI39_1246ECIAI39_1247ECIAI39_1248ECIAI39_1249
ECOL585056 ECUMN_2100ECUMN_2099ECUMN_2098ECUMN_2097ECUMN_2096
ECOL585055 EC55989_1981EC55989_1980EC55989_1979EC55989_1978EC55989_1977
ECOL585035 ECS88_1860ECS88_1859ECS88_1858ECS88_1857ECS88_1856
ECOL585034 ECIAI1_1877ECIAI1_1876ECIAI1_1875ECIAI1_1874ECIAI1_1873
ECOL481805 ECOLC_1825ECOLC_1826ECOLC_1827ECOLC_1828ECOLC_1829
ECOL469008 ECBD_1834ECBD_1835ECBD_1836ECBD_1837ECBD_1838
ECOL439855 ECSMS35_1380ECSMS35_1381ECSMS35_1382ECSMS35_1383ECSMS35_1384
ECOL413997 ECB_01778ECB_01777ECB_01776ECB_01775ECB_01774
ECOL409438 ECSE_1982ECSE_1981ECSE_1980ECSE_1979ECSE_1978
ECOL405955 APECO1_866APECO1_865APECO1_864APECO1_863APECO1_862
ECOL364106 UTI89_C2002UTI89_C2001UTI89_C2000UTI89_C1999UTI89_C1998
ECOL362663 ECP_1751ECP_1750ECP_1749ECP_1748ECP_1747
ECOL331111 ECE24377A_2034ECE24377A_2033ECE24377A_2032ECE24377A_2031ECE24377A_2030
ECOL316407 ECK1806:JW1797:B1808ECK1805:JW1796:B1807ECK1804:JW1795:B1806ECK1803:JW1794:B1805ECK1802:JW1793:B1804
ECOL199310 C2212C2211C2210C2209C2208
ECAR218491 ECA2375ECA2374ECA2373ECA2372ECA2371
DNOD246195 DNO_0572DNO_0573DNO_1002DNO_1123
CSAL290398 CSAL_1624CSAL_0858CSAL_1468CSAL_1461
CPSY167879 CPS_3886CPS_1185CPS_3427CPS_3518
CJAP155077 CJA_2417CJA_2083CJA_1075CJA_2438
CGLU196627 CG2776CG0685CG0480CG2081
CEFF196164 CE2415CE0597CE0421CE1795
CDIP257309 DIP1859DIP0572DIP0387DIP1396
ASP1667 ARTH_1467ARTH_2894ARTH_3583ARTH_1656
ASAL382245 ASA_2099ASA_2098ASA_2097ASA_2095ASA_2094
APLE434271 APJL_0784APJL_0616APJL_0418APJL_0611
APLE416269 APL_0781APL_0621APL_0397APL_0616
AHYD196024 AHA_2199AHA_2201AHA_2202AHA_2204AHA_2205
AEHR187272 MLG_1156MLG_1193MLG_2420MLG_2490


Organism features enriched in list (features available for 121 out of the 128 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 9.726e-6592
Arrangment:Pairs 0.008470332112
Arrangment:Singles 0.002919272286
Disease:Bubonic_plague 0.000072366
Disease:Dysentery 0.000072366
Disease:Gastroenteritis 0.00001641013
Disease:Rice_bacterial_blight_disease 0.008764933
Disease:chronic_bronchitis 0.008764933
Endospores:No 0.001956231211
Endospores:Yes 0.0013263353
GC_Content_Range4:0-40 3.390e-187213
GC_Content_Range4:40-60 1.063e-1585224
GC_Content_Range7:30-40 5.543e-127166
GC_Content_Range7:40-50 0.001467236117
GC_Content_Range7:50-60 3.654e-1149107
Genome_Size_Range5:0-2 1.315e-134155
Genome_Size_Range5:2-4 0.000012522197
Genome_Size_Range5:4-6 8.413e-2081184
Genome_Size_Range9:1-2 2.454e-104128
Genome_Size_Range9:2-3 0.000307312120
Genome_Size_Range9:4-5 1.739e-63896
Genome_Size_Range9:5-6 6.880e-114388
Gram_Stain:Gram_Neg 1.521e-19110333
Gram_Stain:Gram_Pos 3.954e-107150
Habitat:Multiple 0.002708849178
Habitat:Specialized 0.0013263353
Motility:No 9.588e-712151
Motility:Yes 8.507e-881267
Oxygen_Req:Anaerobic 0.00002387102
Oxygen_Req:Facultative 2.115e-1275201
Pathogenic_in:No 0.000128230226
Pathogenic_in:Plant 0.00011151015
Pathogenic_in:Rice 0.008764933
Shape:Coccus 2.546e-8182
Shape:Rod 1.279e-15108347
Shape:Spiral 0.0027069134
Temp._range:Mesophilic 0.0066681107473
Temp._range:Psychrophilic 0.003114269



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 258
Effective number of orgs (counting one per cluster within 468 clusters): 200

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TSP28240 Thermotoga sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08031
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K11
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40180
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451


Names of the homologs of the genes in the group in each of these orgs
  G6992   G6991   G6990   EG11530   EG10858   
WSUC273121
WPIP955 WD_0186
WPIP80849 WB_0403
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267 TW394
TVOL273116
TTHE300852 TTHA1463
TTHE262724 TT_C1065
TSP28240
TPSE340099 TETH39_1744
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124 TERY_1621
TELO197221 TLR1083
TDEN326298
TDEN243275 TDE_1990
TACI273075
STOK273063
STHE322159 STER_1747
STHE299768
STHE264199
SSUI391296 SSU98_0167
SSUI391295 SSU05_0164
SSP84588 SYNW2036OR0782
SSP64471 GSYN0493
SSP387093
SSP321332 CYB_1361
SSP321327 CYA_1113
SSP1148 SLL0320
SSP1131 SYNCC9605_0407
SSOL273057 SSO2523
SSAP342451 SSP0827
SRUB309807 SRU_1154
SPYO370554 MGAS10750_SPY1651
SPYO370553 MGAS2096_SPY1619
SPYO370552 MGAS10270_SPY1664
SPYO370551 MGAS9429_SPY1598
SPYO319701 M28_SPY1585
SPYO293653 M5005_SPY1593
SPYO286636 M6_SPY1604
SPYO198466 SPYM3_1618
SPYO193567 SPS0249
SPYO186103 SPYM18_1939
SPYO160490 SPY1874
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007 SMU_385
SMAR399550
SHAE279808 SH0982
SGOR29390 SGO_0221
SEPI176280 SE_1652
SEPI176279 SERP1663
SAUR93062 SACOL1495
SAUR93061 SAOUHSC_01472
SAUR426430 NWMN_1366
SAUR418127 SAHV_1443
SAUR367830 SAUSA300_1346
SAUR359787 SAURJH1_1543
SAUR359786 SAURJH9_1514
SAUR282459 SAS1398
SAUR282458 SAR1466
SAUR273036 SAB1319C
SAUR196620 MW1345
SAUR158879 SA1288
SAUR158878 SAV1455
SAGA211110 GBS1802
SAGA208435 SAG_1759
SAGA205921 SAK_1781
SACI330779 SACI_2148
RPRO272947 RP462
RFEL315456 RF_0809
RCAN293613 A1E_02480
RBEL391896 A1I_04530
RBEL336407 RBE_0690
RALB246199 GRAORF_3673
RAKA293614 A1C_04125
PTOR263820
PRUM264731
PMOB403833
PMAR93060 P9215_18571
PMAR74547 PMT1703
PMAR74546 PMT9312_1676
PMAR59920 PMN2A_1157
PMAR167555 NATL1_20321
PMAR167546
PMAR167542 P9515ORF_1847
PMAR167540
PMAR167539
PMAR146891 A9601_17921
PISL384616 PISL_1435
PINT246198
PHOR70601
PGIN242619 PG_0778
PFUR186497
PDIS435591 BDI_0158
PAST100379
PARS340102 PARS_0455
PAER178306 PAE1379
PABY272844
OTSU357244
NSP387092
NSP103690 ALL3791
NSEN222891 NSE_0529
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAER449447 MAE_26030
MAEO419665
MACE188937
LXYL281090 LXX10490
LPLA220668 LP_1737
LMES203120 LEUM_1778
LLAC272623 L91807
LLAC272622 LACR_0327
LINT363253
LDEL390333 LDB1623
LDEL321956 LBUL_1503
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032 HNE_2258
HMUK485914
HMAR272569
HHEP235279
HBUT415426
HACI382638
GOXY290633 GOX0625
GFOR411154 GFO_0202
GBET391165 GBCGDNIH1_0211
FNOD381764
FMAG334413 FMG_1218
FJOH376686 FJOH_1673
ERUM302409 ERGA_CDS_07220
ERUM254945 ERWE_CDS_07300
ECHA205920 ECH_0300
ECAN269484 ECAJ_0703
DVUL882 DVU_1453
DSP255470 CBDBA344
DSP216389 DEHABAV1_0374
DRAD243230 DR_1692
DETH243164 DET_0395
DDES207559 DDE_1725
CTRA471473
CTRA471472
CTET212717 CTC_02444
CSUL444179
CPRO264201 PC0176
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_2133
CPER195103 CPF_2423
CPER195102 CPE2165
CPEL335992
CNOV386415 NT01CX_0503
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_0760
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHYD246194 CHY_1735
CHUT269798 CHU_0099
CHOM360107
CFET360106
CFEL264202
CDIF272563 CD0150
CCUR360105
CCON360104
CCHL340177 CAG_1986
CCAV227941
CBUR434922 COXBU7E912_1458
CBUR360115 COXBURSA331_A1527
CBUR227377 CBU_1371
CBOT536232 CLM_3757
CBOT515621 CLJ_B3603
CBOT498213 CLD_1200
CBOT441772 CLI_3494
CBOT441771 CLC_3266
CBOT441770 CLB_3379
CBOT36826 CBO3321
CBLO291272 BPEN_456
CBLO203907 BFL442
CACE272562 CAC2839
CABO218497
BXEN266265
BTUR314724 BT0735A
BTHE226186 BT_2007
BSP107806 BU324
BLON206672 BL0948
BHER314723 BH0735A
BGAR290434
BFRA295405 BF3704
BFRA272559 BF3497
BCIC186490 BCI_0447
BBUR224326
BAPH372461 BCC_202
BAPH198804 BUSG315
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042 APH_0137
APER272557 APE2284
AORE350688 CLOS_2469
AMAR329726 AM1_1676
AMAR234826 AM151
ALAI441768 ACL_1356
AFUL224325 AF_0840
ABUT367737
ABAC204669 ACID345_4634


Organism features enriched in list (features available for 241 out of the 258 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00004955592
Arrangment:Clusters 0.00006661517
Disease:Pharyngitis 0.000795788
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00005251111
Disease:Wide_range_of_infections 0.00005251111
Disease:bronchitis_and_pneumonitis 0.000795788
Endospores:No 2.440e-11125211
GC_Content_Range4:0-40 8.212e-27149213
GC_Content_Range4:40-60 0.000659275224
GC_Content_Range4:60-100 8.787e-1917145
GC_Content_Range7:0-30 8.228e-144347
GC_Content_Range7:30-40 2.627e-12106166
GC_Content_Range7:50-60 8.217e-919107
GC_Content_Range7:60-70 4.786e-1617134
Genome_Size_Range5:0-2 9.158e-33126155
Genome_Size_Range5:4-6 6.576e-3017184
Genome_Size_Range5:6-10 8.851e-6647
Genome_Size_Range9:0-1 7.635e-102627
Genome_Size_Range9:1-2 7.091e-22100128
Genome_Size_Range9:2-3 2.585e-774120
Genome_Size_Range9:3-4 0.00021461877
Genome_Size_Range9:4-5 2.363e-111296
Genome_Size_Range9:5-6 5.228e-16588
Genome_Size_Range9:6-8 0.0000176438
Gram_Stain:Gram_Neg 8.061e-1396333
Habitat:Host-associated 0.0008922102206
Habitat:Multiple 5.628e-650178
Habitat:Specialized 0.00025503453
Habitat:Terrestrial 0.0003917431
Motility:No 3.095e-686151
Motility:Yes 1.171e-780267
Optimal_temp.:25-30 0.0004535119
Optimal_temp.:25-35 0.0052380114
Optimal_temp.:30-37 0.00024001518
Optimal_temp.:37 0.002663456106
Oxygen_Req:Aerobic 3.537e-1141185
Oxygen_Req:Anaerobic 1.722e-1274102
Oxygen_Req:Facultative 0.004805570201
Pathogenic_in:Human 0.0054527101213
Shape:Coccus 9.647e-126282
Shape:Irregular_coccus 2.135e-71717
Shape:Rod 1.165e-3077347
Shape:Sphere 0.00001331719
Shape:Spiral 0.00093162334
Temp._range:Hyperthermophilic 4.821e-72123
Temp._range:Mesophilic 0.0003541180473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120780.5374
GLYCOCAT-PWY (glycogen degradation I)2461160.5320
PWY-5148 (acyl-CoA hydrolysis)2271110.5313
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181060.5099
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.5078
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195990.5049
GLUCONSUPER-PWY (D-gluconate degradation)2291060.4857
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491080.4610
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491080.4610
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251010.4530
GALACTITOLCAT-PWY (galactitol degradation)73510.4447
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94590.4405
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901140.4334
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911140.4317
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961150.4311
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176850.4310
GLUTDEG-PWY (glutamate degradation II)194890.4216
ECASYN-PWY (enterobacterial common antigen biosynthesis)191880.4201
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001140.4163
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4106
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96570.4102
PWY0-1337 (oleate β-oxidation)199880.4014



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6991   G6990   EG11530   EG10858   
G69920.9991320.9990230.9986710.998975
G69910.9991580.9987540.99853
G69900.9991890.99905
EG115300.999121
EG10858



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PAIRWISE BLAST SCORES:

  G6992   G6991   G6990   EG11530   EG10858   
G69920.0f0----
G6991-0.0f0---
G6990--0.0f0--
EG11530---0.0f0-
EG10858----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10858 EG11530 G6990 G6991 G6992 (centered at G6990)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6992   G6991   G6990   EG11530   EG10858   
302/623413/62384/623279/623285/623
AAEO224324:0:Tyes0---1139
AAUR290340:2:Tyes01246--191
AAVE397945:0:Tyes01302-1307-
ABAC204669:0:Tyes0----
ABAU360910:0:Tyes1460-1795-
ABOR393595:0:Tyes01--654
ACAU438753:0:Tyes-1764-0698
ACEL351607:0:Tyes11200--1031
ACRY349163:8:Tyes0--7281849
ADEH290397:0:Tyes27421996--0
AEHR187272:0:Tyes03712551325-
AFER243159:0:Tyes01189--
AFUL224325:0:Tyes---0-
AHYD196024:0:Tyes02356
ALAI441768:0:Tyes-0---
AMAR234826:0:Tyes----0
AMAR329726:9:Tyes----0
AMET293826:0:Tyes28960---
ANAE240017:0:Tyes0--637427
AORE350688:0:Tyes-0---
APER272557:0:Tyes---0-
APHA212042:0:Tyes----0
APLE416269:0:Tyes384223-0218
APLE434271:0:Tno346180-0175
ASAL382245:5:Tyes54310
ASP1667:3:Tyes01440-2130193
ASP232721:2:Tyes12713339-0-
ASP62928:0:Tyes539696-0-
ASP62977:0:Tyes-411-01941
ASP76114:2:Tyes11411034-0-
AVAR240292:3:Tyes---20780
BABO262698:1:Tno-1741-0424
BAMB339670:3:Tno325673-0-
BAMB398577:3:Tno252492-0-
BAMY326423:0:Tyes14170-409-
BANT260799:0:Tno12430-4193-
BANT261594:2:Tno12080-4147-
BANT568206:2:Tyes26850-4381-
BANT592021:2:Tno12560-4369-
BAPH198804:0:Tyes-0---
BAPH372461:0:Tyes-0---
BBAC264462:0:Tyes-1839-0-
BBAC360095:0:Tyes-336--0
BBRO257310:0:Tyes0209-583-
BCAN483179:1:Tno-1835-0454
BCEN331271:0:Tno2540---
BCEN331271:2:Tno---0-
BCEN331272:3:Tyes260510-0-
BCER226900:1:Tyes12590-4154-
BCER288681:0:Tno12330-4066-
BCER315749:1:Tyes9770-2836-
BCER405917:1:Tyes13170-4135-
BCER572264:1:Tno12050-4200-
BCIC186490:0:Tyes-0---
BCLA66692:0:Tyes12110-1834-
BFRA272559:1:Tyes-0---
BFRA295405:0:Tno-0---
BHAL272558:0:Tyes11730-2599-
BHEN283166:0:Tyes-0--709
BHER314723:0:Fyes0----
BJAP224911:0:Fyes-0-5243352
BLIC279010:0:Tyes17200-2327-
BLON206672:0:Tyes----0
BMAL243160:1:Tno47278-0-
BMAL320388:1:Tno51316-0-
BMAL320389:1:Tyes51318-0-
BMEL224914:1:Tno-784-4320
BMEL359391:1:Tno-1683-0419
BOVI236:1:Tyes-1577-0398
BPAR257311:0:Tno0154-519-
BPER257313:0:Tyes02188-1511-
BPET94624:0:Tyes1440-1736-
BPSE272560:1:Tyes0644-1511-
BPSE320372:1:Tno0216-1198-
BPSE320373:1:Tno377661-0-
BPUM315750:0:Tyes14460-1982-
BQUI283165:0:Tyes-0--479
BSP107806:2:Tyes-0---
BSP36773:2:Tyes14851747-0-
BSP376:0:Tyes-0-62073143
BSUB:0:Tyes17410-458-
BSUI204722:1:Tyes-1799-0444
BSUI470137:1:Tno-1625-0452
BTHA271848:1:Tno1120872-0-
BTHE226186:0:Tyes-0---
BTHU281309:1:Tno11730-3992-
BTHU412694:1:Tno11250-3711-
BTRI382640:1:Tyes-0--993
BTUR314724:0:Fyes0----
BVIE269482:7:Tyes218446-0-
BWEI315730:4:Tyes12690-4071-
CACE272562:1:Tyes-0---
CAULO:0:Tyes20060--1668
CBEI290402:0:Tyes15290---
CBLO203907:0:Tyes-0---
CBLO291272:0:Tno-0---
CBOT36826:1:Tno-0---
CBOT441770:0:Tyes-0---
CBOT441771:0:Tno-0---
CBOT441772:1:Tno-0---
CBOT498213:1:Tno-0---
CBOT508765:1:Tyes11480---
CBOT515621:2:Tyes-0---
CBOT536232:0:Tno-0---
CBUR227377:1:Tyes-0---
CBUR360115:1:Tno-0---
CBUR434922:2:Tno-0---
CCHL340177:0:Tyes-0---
CDES477974:0:Tyes01439---
CDIF272563:1:Tyes-0---
CDIP257309:0:Tyes1466184-01009
CEFF196164:0:Fyes2036180-01406
CGLU196627:0:Tyes2099186-01468
CHUT269798:0:Tyes-0---
CHYD246194:0:Tyes---0-
CJAP155077:0:Tyes1312980-01333
CJEI306537:0:Tyes0--1482616
CKLU431943:1:Tyes-0---
CMIC31964:2:Tyes-0-5351094
CMIC443906:2:Tyes-1185-0257
CNOV386415:0:Tyes-0---
CPER195102:1:Tyes-0---
CPER195103:0:Tno-0---
CPER289380:3:Tyes-0---
CPHY357809:0:Tyes11870---
CPRO264201:0:Fyes0----
CPSY167879:0:Tyes26210-21752265
CRUT413404:0:Tyes0280---
CSAL290398:0:Tyes7900-627620
CSP501479:8:Fyes-0--1548
CSP78:2:Tyes14450--2539
CTEP194439:0:Tyes-93-0-
CTET212717:0:Tyes-0---
CVES412965:0:Tyes0258---
CVIO243365:0:Tyes19543442-0-
DARO159087:0:Tyes227431-0-
DDES207559:0:Tyes---0-
DETH243164:0:Tyes-0---
DGEO319795:1:Tyes-451-0-
DHAF138119:0:Tyes02117-612-
DNOD246195:0:Tyes01-410526
DOLE96561:0:Tyes-658-02013
DPSY177439:2:Tyes6010--1676
DRAD243230:3:Tyes---0-
DRED349161:0:Tyes01152-1235-
DSHI398580:5:Tyes-1860-0900
DSP216389:0:Tyes-0---
DSP255470:0:Tno-0---
DVUL882:1:Tyes---0-
ECAN269484:0:Tyes----0
ECAR218491:0:Tyes43210
ECHA205920:0:Tyes----0
ECOL199310:0:Tno43210
ECOL316407:0:Tno43210
ECOL331111:6:Tno43210
ECOL362663:0:Tno43210
ECOL364106:1:Tno43210
ECOL405955:2:Tyes43210
ECOL409438:6:Tyes43210
ECOL413997:0:Tno43210
ECOL439855:4:Tno01234
ECOL469008:0:Tno01234
ECOL481805:0:Tno01234
ECOL585034:0:Tno43210
ECOL585035:0:Tno43210
ECOL585055:0:Tno43210
ECOL585056:2:Tno43210
ECOL585057:0:Tno01234
ECOL585397:0:Tno43210
ECOL83334:0:Tno43210
ECOLI:0:Tno54320
ECOO157:0:Tno43210
EFAE226185:3:Tyes096---
EFER585054:1:Tyes01234
ELIT314225:0:Tyes-915-18740
ERUM254945:0:Tyes----0
ERUM302409:0:Tno----0
ESP42895:1:Tyes43210
FALN326424:0:Tyes-0-1446941
FJOH376686:0:Tyes-0---
FMAG334413:1:Tyes-0---
FNUC190304:0:Tyes0185---
FPHI484022:1:Tyes-0-12581902
FRANT:0:Tno-359-7120
FSP106370:0:Tyes-0--704
FSP1855:0:Tyes-822--0
FSUC59374:0:Tyes1185---0
FTUL351581:0:Tno-175-0754
FTUL393011:0:Tno-166-0677
FTUL393115:0:Tyes-357-6950
FTUL401614:0:Tyes-465-7500
FTUL418136:0:Tno-694-0885
FTUL458234:0:Tno-177-0700
GBET391165:0:Tyes----0
GFOR411154:0:Tyes-0---
GKAU235909:1:Tyes19870-2501-
GMET269799:1:Tyes19130176-2137
GOXY290633:5:Tyes----0
GSUL243231:0:Tyes01541179-80
GTHE420246:1:Tyes18660-2366-
GURA351605:0:Tyes204616560-2212
GVIO251221:0:Tyes181--02721
HARS204773:0:Tyes9721455-0-
HAUR316274:2:Tyes01771-1140-
HCHE349521:0:Tyes8040-796767
HDUC233412:0:Tyes0168--172
HHAL349124:0:Tyes0121016601696-
HINF281310:0:Tyes01234
HINF374930:0:Tyes43210
HINF71421:0:Tno01234
HMOD498761:0:Tyes-1629-0-
HNEP81032:0:Tyes----0
HSOM205914:1:Tyes01-23
HSOM228400:0:Tno01-23
ILOI283942:0:Tyes65310
JSP290400:1:Tyes-0-395982
JSP375286:0:Tyes18941271-0-
KPNE272620:2:Tyes43210
KRAD266940:2:Fyes76858--0
LACI272621:0:Tyes7680---
LBIF355278:2:Tyes1484---0
LBIF456481:2:Tno1532---0
LBOR355276:1:Tyes0---950
LBOR355277:1:Tno1252---0
LBRE387344:2:Tyes2440---
LCAS321967:1:Tyes0744---
LCHO395495:0:Tyes25370-54-
LDEL321956:0:Tyes-0---
LDEL390333:0:Tyes-0---
LGAS324831:0:Tyes6210---
LHEL405566:0:Tyes7120---
LINN272626:1:Tno0169---
LINT189518:1:Tyes0---2240
LINT267671:1:Tno0---1226
LJOH257314:0:Tyes6090---
LLAC272622:5:Tyes-0---
LLAC272623:0:Tyes-0---
LMES203120:1:Tyes-0---
LMON169963:0:Tno0178---
LMON265669:0:Tyes0181---
LPLA220668:0:Tyes0----
LPNE272624:0:Tno367366-0-
LPNE297245:1:Fno416415-0-
LPNE297246:1:Fyes391390-0-
LPNE400673:0:Tno392391-0-
LREU557436:0:Tyes6000---
LSAK314315:0:Tyes5970---
LSPH444177:1:Tyes19580-3823-
LWEL386043:0:Tyes0180---
LXYL281090:0:Tyes----0
MABS561007:1:Tyes02275--1527
MAER449447:0:Tyes----0
MAQU351348:2:Tyes0641-825
MAVI243243:0:Tyes02786---
MBOV233413:0:Tno02111--1352
MBOV410289:0:Tno02109--1314
MCAP243233:0:Tyes0207183-371
MEXT419610:0:Tyes-284-7310
MFLA265072:0:Tyes01---
MGIL350054:3:Tyes02597---
MLEP272631:0:Tyes-0--404
MLOT266835:2:Tyes-97-02394
MMAG342108:0:Tyes7711619--0
MMAR394221:0:Tyes-1766--0
MPET420662:1:Tyes17000-3264-
MSME246196:0:Tyes33060---
MSP164756:1:Tno27240--1061
MSP164757:0:Tno26650--1011
MSP189918:2:Tyes27680--1079
MSP266779:3:Tyes---01060
MSP400668:0:Tyes8670-3201298
MSP409:2:Tyes-3036-04137
MSUC221988:0:Tyes43210
MTBCDC:0:Tno02253--1451
MTBRV:0:Tno02108--1366
MTHE264732:0:Tyes6351615-0-
MTUB336982:0:Tno02076--1319
MTUB419947:0:Tyes02189--1421
MVAN350058:0:Tyes27830--978
MXAN246197:0:Tyes715---0
NARO279238:0:Tyes1041---0
NEUR228410:0:Tyes0528965--
NEUT335283:2:Tyes821650--
NFAR247156:2:Tyes2070--2890
NGON242231:0:Tyes15280-1071-
NHAM323097:2:Tyes-0-35982018
NMEN122586:0:Tno01524-1219-
NMEN122587:0:Tyes15390-1081-
NMEN272831:0:Tno050-1035-
NMEN374833:0:Tno14840-1091-
NMUL323848:3:Tyes0701837--
NOCE323261:1:Tyes4350400--
NSEN222891:0:Tyes----0
NSP103690:6:Tyes----0
NSP35761:1:Tyes12111050-01063
NWIN323098:0:Tyes-0-27041597
OANT439375:5:Tyes-387-02212
OCAR504832:0:Tyes-0-28521813
OIHE221109:0:Tyes11330-23-
PACN267747:0:Tyes0762--40
PAER178306:0:Tyes---0-
PAER208963:0:Tyes27690-3762495
PAER208964:0:Tno02667-2281249
PARC259536:0:Tyes-922-10840
PARS340102:0:Tyes---0-
PATL342610:0:Tyes65310
PCAR338963:0:Tyes01911--301
PCRY335284:1:Tyes-1177-13490
PDIS435591:0:Tyes-0---
PENT384676:0:Tyes70-25412594
PFLU205922:0:Tyes1560-3324321
PFLU216595:1:Tyes800-3447264
PFLU220664:0:Tyes1270-3397341
PGIN242619:0:Tyes-0---
PHAL326442:0:Tyes01-56
PING357804:0:Tyes11901189-0608
PISL384616:0:Tyes---0-
PLUM243265:0:Fyes03456
PLUT319225:0:Tyes-0-1920-
PMAR146891:0:Tyes----0
PMAR167542:0:Tyes----0
PMAR167555:0:Tyes----0
PMAR59920:0:Tno----0
PMAR74546:0:Tyes----0
PMAR74547:0:Tyes----0
PMAR93060:0:Tyes----0
PMEN399739:0:Tyes01957-69349
PMUL272843:1:Tyes43210
PNAP365044:8:Tyes01995-1946-
PPEN278197:0:Tyes0519---
PPRO298386:2:Tyes01356
PPUT160488:0:Tno0379-34143455
PPUT351746:0:Tyes03073-188146
PPUT76869:0:Tno32130-29743038
PSP117:0:Tyes1342---0
PSP296591:2:Tyes01991-1915-
PSP312153:0:Tyes-34-0-
PSP56811:2:Tyes-0-16841196
PSTU379731:0:Tyes1561366-15840
PSYR205918:0:Tyes25520-2532245
PSYR223283:2:Tyes25760-25542383
PTHE370438:0:Tyes6990-659-
RAKA293614:0:Fyes----0
RALB246199:0:Tyes-0---
RBEL336407:0:Tyes----0
RBEL391896:0:Fno----0
RCAN293613:0:Fyes----0
RCAS383372:0:Tyes0--240-
RCON272944:0:Tno-124--0
RDEN375451:4:Tyes-1034-01608
RETL347834:5:Tyes-0-981106
REUT264198:3:Tyes0596-1673-
REUT381666:2:Tyes0650-1795-
RFEL315456:2:Tyes----0
RFER338969:1:Tyes21270-2094-
RLEG216596:6:Tyes-0-1081210
RMAS416276:1:Tyes-41--0
RMET266264:2:Tyes0157-1899-
RPAL258594:0:Tyes-0-38382604
RPAL316055:0:Tyes-0-14863041
RPAL316056:0:Tyes-0-36071864
RPAL316057:0:Tyes-0-10912733
RPAL316058:0:Tyes-0-7661924
RPOM246200:1:Tyes-0--1750
RPRO272947:0:Tyes----0
RRIC392021:0:Fno-49--0
RRIC452659:0:Tyes-52--0
RRUB269796:1:Tyes-2444-0760
RSAL288705:0:Tyes0963--1648
RSOL267608:1:Tyes2710-1515-
RSP101510:3:Fyes04726-495397
RSP357808:0:Tyes0--179-
RSPH272943:4:Tyes-253--0
RSPH349101:2:Tno-210--0
RSPH349102:5:Tyes-0--782
RTYP257363:0:Tno-88--0
RXYL266117:0:Tyes-0-9432345
SACI330779:0:Tyes---0-
SACI56780:0:Tyes0-135620560
SAGA205921:0:Tno-0---
SAGA208435:0:Tno-0---
SAGA211110:0:Tyes-0---
SALA317655:1:Tyes12521918-01600
SARE391037:0:Tyes0--18511128
SAUR158878:1:Tno0----
SAUR158879:1:Tno0----
SAUR196620:0:Tno0----
SAUR273036:0:Tno0----
SAUR282458:0:Tno0----
SAUR282459:0:Tno0----
SAUR359786:1:Tno0----
SAUR359787:1:Tno0----
SAUR367830:3:Tno0----
SAUR418127:0:Tyes0----
SAUR426430:0:Tno0----
SAUR93061:0:Fno0----
SAUR93062:1:Tno0----
SAVE227882:1:Fyes20934650-01860
SBAL399599:3:Tyes6520-56
SBAL402882:1:Tno5370-56
SBOY300268:1:Tyes01234
SCO:2:Fyes10580--1280
SDEG203122:0:Tyes1058910-5570
SDEN318161:0:Tyes01-67
SDYS300267:1:Tyes43210
SELO269084:0:Tyes-0--766
SENT209261:0:Tno01234
SENT220341:0:Tno43210
SENT295319:0:Tno01234
SENT321314:2:Tno54310
SENT454169:2:Tno54310
SEPI176279:1:Tyes-0---
SEPI176280:0:Tno-0---
SERY405948:0:Tyes05407-2184640
SFLE198214:0:Tyes01234
SFLE373384:0:Tno01234
SFUM335543:0:Tyes25441662-0303
SGLO343509:3:Tyes0425--426
SGOR29390:0:Tyes-0---
SHAE279808:0:Tyes-0---
SHAL458817:0:Tyes02-78
SHIGELLA:0:Tno01234
SLAC55218:1:Fyes-0--2108
SLOI323850:0:Tyes96-10
SMED366394:3:Tyes-0-73758
SMEL266834:2:Tyes-0-83799
SMUT210007:0:Tyes-0---
SONE211586:1:Tyes0500-495494
SPEA398579:0:Tno86-10
SPRO399741:1:Tyes43210
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