CANDIDATE ID: 596

CANDIDATE ID: 596

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9925790e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG12878 (zapA) (b2910)
   Products of gene:
     - EG12878-MONOMER (protein that localizes to the cytokinetic ring)
     - CPLX0-7538 (protein that localizes to the cytokinetic ring)

- EG11443 (rpiA) (b2914)
   Products of gene:
     - RIB5PISOMA-MONOMER (ribose-5-phosphate isomerase A)
     - RIB5PISOMA-CPLX (ribose-5-phosphate isomerase A)
       Reactions:
        D-ribose-5-phosphate  =  D-ribulose-5-phosphate
         In pathways
         PENTOSE-P-PWY (pentose phosphate pathway)
         PHOTOALL-PWY (PHOTOALL-PWY)
         PWY-1861 (PWY-1861)
         P185-PWY (P185-PWY)
         P124-PWY (P124-PWY)
         NONOXIPENT-PWY (pentose phosphate pathway (non-oxidative branch))
         PWY-5723 (PWY-5723)
         CALVIN-PWY (CALVIN-PWY)

- EG11323 (ygfB) (b2909)
   Products of gene:
     - EG11323-MONOMER (predicted protein)

- EG11158 (ygfA) (b2912)
   Products of gene:
     - EG11158-MONOMER (predicted ligase)

- EG10697 (pepP) (b2908)
   Products of gene:
     - EG10697-MONOMER (PepP)
     - CPLX0-3081 (proline aminopeptidase P II)
       Reactions:
        EC# 3.4.11.9



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 126
Effective number of orgs (counting one per cluster within 468 clusters): 75

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79015
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL15
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23965
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus5
ASP62977 ncbi Acinetobacter sp. ADP14
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ABOR393595 ncbi Alcanivorax borkumensis SK24


Names of the homologs of the genes in the group in each of these orgs
  EG12878   EG11443   EG11323   EG11158   EG10697   
YPSE349747 YPSIP31758_0858YPSIP31758_0855YPSIP31758_0859YPSIP31758_0857YPSIP31758_0860
YPSE273123 YPTB3187YPTB3190YPTB3186YPTB3188YPTB3185
YPES386656 YPDSF_0602YPDSF_0598YPDSF_0603YPDSF_0601YPDSF_0604
YPES377628 YPN_3111YPN_3114YPN_3110YPN_3112YPN_3109
YPES360102 YPA_0355YPA_0352YPA_0356YPA_0354YPA_0357
YPES349746 YPANGOLA_A3825YPANGOLA_A3822YPANGOLA_A3826YPANGOLA_A3824YPANGOLA_A3827
YPES214092 YPO0912YPO0915YPO0911YPO0913YPO0910
YPES187410 Y3299Y3302Y3298Y3300Y3297
YENT393305 YE3398YE3401YE3397YE3399YE3396
XORY360094 XOOORF_4217XOOORF_4221XOOORF_4215XOOORF_4219XOOORF_4214
XORY342109 XOO1026XOO1023XOO1028XOO1025XOO1029
XORY291331 XOO1130XOO1127XOO1132XOO1129XOO1133
XFAS405440 XFASM12_0963XFASM12_0960XFASM12_0965XFASM12_0962XFASM12_0966
XFAS183190 PD_0800PD_0797PD_0802PD_0799PD_0803
XFAS160492 XF2012XF2015XF2010XF2013XF2009
XCAM487884 XCC-B100_0922XCC-B100_0919XCC-B100_0924XCC-B100_0921XCC-B100_0925
XCAM316273 XCAORF_3603XCAORF_3606XCAORF_3601XCAORF_3604XCAORF_3600
XCAM314565 XC_0902XC_0899XC_0904XC_0901XC_0905
XCAM190485 XCC3262XCC3265XCC3260XCC3263XCC3259
XAXO190486 XAC3408XAC3411XAC3406XAC3409XAC3405
VVUL216895 VV1_1549VV1_1547VV1_1551VV1_1548
VVUL196600 VV2848VV2850VV2847VV2849
VPAR223926 VP2590VP2592VP2588VP2591
VFIS312309 VF2103VF2105VF2102VF2104
VCHO345073 VC0395_A2054VC0395_A2056VC0395_A2053VC0395_A2055
VCHO VC2478VC2480VC2476VC2479
TTUR377629 TERTU_0398TERTU_0392TERTU_0401TERTU_0397TERTU_0402
TDEN292415 TBD_2723TBD_2364TBD_2724TBD_2334
TCRU317025 TCR_1568TCR_1560TCR_1562TCR_1559
STYP99287 STM3060STM3063STM3059STM3061STM3058
SSP94122 SHEWANA3_3505SHEWANA3_0978SHEWANA3_3504SHEWANA3_3506SHEWANA3_0025
SSON300269 SSO_3063SSO_3066SSO_3062SSO_3064SSO_3061
SSED425104 SSED_3679SSED_0898SSED_3678SSED_3686SSED_1782
SPRO399741 SPRO_3921SPRO_3924SPRO_3920SPRO_3922SPRO_3919
SPEA398579 SPEA_3308SPEA_0816SPEA_3306SPEA_3311SPEA_1711
SONE211586 SO_0775SO_1150SO_0776SO_0774SO_0022
SLOI323850 SHEW_3068SHEW_0825SHEW_3067SHEW_3069SHEW_2358
SHIGELLA YGFERPIAYGFBYGFAPEPP
SHAL458817 SHAL_3379SHAL_0870SHAL_3378SHAL_3386SHAL_2548
SGLO343509 SG2007SG2010SG2006SG2008SG2005
SFLE373384 SFV_2958SFV_2961SFV_2957SFV_2959SFV_2956
SFLE198214 AAN44380.1AAN44383.1AAN44379.1AAN44381.1AAN44378.1
SENT454169 SEHA_C3293SEHA_C3298SEHA_C3292SEHA_C3295SEHA_C3291
SENT321314 SCH_3001SCH_3004SCH_3000SCH_3002SCH_2999
SENT295319 SPA2928SPA2934SPA2927SPA2931SPA2926
SENT220341 STY3216STY3219STY3215STY3217STY3214
SENT209261 T2978T2981T2977T2979T2976
SDYS300267 SDY_3171SDY_3168SDY_3172SDY_3170SDY_3173
SDEN318161 SDEN_0829SDEN_1092SDEN_0830SDEN_0828
SDEG203122 SDE_3516SDE_3387SDE_3517SDE_3513
SBOY300268 SBO_3082SBO_3079SBO_3083SBO_3081SBO_3084
SBAL402882 SHEW185_3681SHEW185_3389SHEW185_3680SHEW185_3682SHEW185_0017
SBAL399599 SBAL195_3805SBAL195_3514SBAL195_3804SBAL195_3806SBAL195_0021
PSYR223283 PSPTO_5289PSPTO_5224PSPTO_5227PSPTO_5223
PSYR205918 PSYR_4847PSYR_0320PSYR_0317PSYR_0321
PSTU379731 PST_0404PST_4071PST_4073PST_4070
PSP56811 PSYCPRWF_1880PSYCPRWF_0779PSYCPRWF_1878PSYCPRWF_1976
PPUT76869 PPUTGB1_5263PPUTGB1_5203PPUTGB1_5264PPUTGB1_5260
PPUT351746 PPUT_5110PPUT_5057PPUT_5108PPUT_5111PPUT_5107
PPUT160488 PP_5202PP_5150PP_5201PP_5203PP_5200
PPRO298386 PBPRA3120PBPRA3122PBPRA3119PBPRA3121
PMUL272843 PM1722PM1670PM1723PM1721PM1724
PMEN399739 PMEN_0322PMEN_4223PMEN_0324PMEN_0321PMEN_0325
PLUM243265 PLU3603PLU3606PLU3602PLU3604PLU3601
PING357804 PING_0604PING_0601PING_0605PING_0602PING_0606
PHAL326442 PSHAA0295PSHAA0667PSHAA0561PSHAA0668PSHAA0562
PFLU220664 PFL_5970PFL_5906PFL_5969PFL_5971PFL_5968
PFLU216595 PFLU5883PFLU5824PFLU5881PFLU5885PFLU5880
PFLU205922 PFL_5437PFL_5382PFL_5438PFL_5434
PENT384676 PSEEN5318PSEEN5243PSEEN5319PSEEN5315
PATL342610 PATL_3508PATL_3503PATL_3507PATL_3502
PAER208964 PA5227PA0330PA5225PA5228PA5224
PAER208963 PA14_69030PA14_04310PA14_69010PA14_69040PA14_69000
NOCE323261 NOC_2576NOC_2667NOC_2578NOC_2579
MSUC221988 MS0477MS1744MS0478MS0476MS0479
MSP400668 MMWYL1_1130MMWYL1_4136MMWYL1_3758MMWYL1_1129MMWYL1_3757
MCAP243233 MCA_2772MCA_0355MCA_2771MCA_2773MCA_2770
MAQU351348 MAQU_3434MAQU_3437MAQU_3428MAQU_3435MAQU_3427
LPNE400673 LPC_0113LPC_0098LPC_2709LPC_0099
LPNE297246 LPP0108LPP0090LPP0643LPP0091
LPNE297245 LPL0093LPL0078LPL0627LPL0079
LPNE272624 LPG0094LPG0076LPG0593LPG0077
KPNE272620 GKPORF_B2700GKPORF_B2704GKPORF_B2699GKPORF_B2701GKPORF_B2698
ILOI283942 IL2100IL2103IL2099IL2102IL2098
HSOM228400 HSM_1095HSM_2008HSM_1094HSM_1096HSM_1093
HSOM205914 HS_0684HS_0123HS_0683HS_0685HS_0682
HINF71421 HI_0857HI_0464HI_0817HI_0858HI_0816
HINF374930 CGSHIEE_07755CGSHIEE_00670CGSHIEE_07975CGSHIEE_07750CGSHIEE_07980
HINF281310 NTHI1025NTHI0595NTHI0981NTHI1027NTHI0980
HHAL349124 HHAL_1182HHAL_1176HHAL_1184HHAL_1181HHAL_1185
HDUC233412 HD_1001HD_0199HD_1002HD_1418
HCHE349521 HCH_01065HCH_01062HCH_01069HCH_01064HCH_01070
ESP42895 ENT638_3329ENT638_3333ENT638_3328ENT638_3331ENT638_3327
EFER585054 EFER_2847EFER_2851EFER_2846EFER_2849EFER_2845
ECOO157 YGFERPIAYGFBYGFAPEPP
ECOL83334 ECS3781ECS3785ECS3780ECS3782ECS3779
ECOL585397 ECED1_3369ECED1_3372ECED1_3368ECED1_3370ECED1_3367
ECOL585057 ECIAI39_3326ECIAI39_3329ECIAI39_3325ECIAI39_3327ECIAI39_3324
ECOL585056 ECUMN_3252ECUMN_3255ECUMN_3251ECUMN_3253ECUMN_3250
ECOL585055 EC55989_3198EC55989_3202EC55989_3197EC55989_3199EC55989_3196
ECOL585035 ECS88_3190ECS88_3193ECS88_3189ECS88_3191ECS88_3188
ECOL585034 ECIAI1_3029ECIAI1_3034ECIAI1_3028ECIAI1_3031ECIAI1_3027
ECOL481805 ECOLC_0799ECOLC_0796ECOLC_0800ECOLC_0798ECOLC_0801
ECOL469008 ECBD_0827ECBD_0824ECBD_0828ECBD_0826ECBD_0829
ECOL439855 ECSMS35_3044ECSMS35_3047ECSMS35_3043ECSMS35_3045ECSMS35_3042
ECOL413997 ECB_02742ECB_02745ECB_02741ECB_02743ECB_02740
ECOL409438 ECSE_3173ECSE_3176ECSE_3172ECSE_3174ECSE_3171
ECOL405955 APECO1_3618APECO1_3615APECO1_3619APECO1_3617APECO1_3620
ECOL364106 UTI89_C3297UTI89_C3300UTI89_C3295UTI89_C3298UTI89_C3294
ECOL362663 ECP_2903ECP_2906ECP_2902ECP_2904ECP_2901
ECOL331111 ECE24377A_3238ECE24377A_3241ECE24377A_3237ECE24377A_3239ECE24377A_3236
ECOL316407 ECK2905:JW2878:B2910ECK2910:JW5475:B2914ECK2904:JW5473:B2909ECK2907:JW2879:B2912ECK2903:JW2876:B2908
ECOL199310 C3492C3495C3491C3493C3490
ECAR218491 ECA0461ECA3906ECA0460ECA0462ECA0459
DNOD246195 DNO_0713DNO_0522DNO_0717DNO_1201DNO_0429
CVIO243365 CV_0498CV_1260CV_0499CV_3122
CSAL290398 CSAL_0022CSAL_0019CSAL_0021CSAL_0024
CPSY167879 CPS_1268CPS_1545CPS_1270CPS_3648CPS_1271
CJAP155077 CJA_0291CJA_0238CJA_0293CJA_0289CJA_0294
ASP62977 ACIAD1358ACIAD1125ACIAD1116ACIAD1126
ASAL382245 ASA_2637ASA_1642ASA_2636ASA_1643
APLE434271 APJL_0111APJL_1475APJL_0112APJL_0110APJL_0653
APLE416269 APL_0110APL_1453APL_0111APL_0109APL_0663
AHYD196024 AHA_1714AHA_2728AHA_1715AHA_2727AHA_0141
AEHR187272 MLG_2539MLG_0086MLG_2541MLG_2538MLG_2542
ABOR393595 ABO_2606ABO_2601ABO_2604ABO_2600


Organism features enriched in list (features available for 120 out of the 126 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000508692
Arrangment:Pairs 0.004184233112
Arrangment:Singles 0.000169976286
Disease:Bubonic_plague 0.000068766
Disease:Dysentery 0.000068766
Disease:Gastroenteritis 0.00001511013
Disease:Legionnaire's_disease 0.001724344
Disease:Rice_bacterial_blight_disease 0.008547633
Disease:chronic_bronchitis 0.008547633
Endospores:No 0.000145227211
GC_Content_Range4:0-40 3.033e-1312213
GC_Content_Range4:40-60 2.470e-1584224
GC_Content_Range7:30-40 4.930e-812166
GC_Content_Range7:40-50 0.000272938117
GC_Content_Range7:50-60 2.157e-946107
Genome_Size_Range5:0-2 2.111e-125155
Genome_Size_Range5:2-4 0.000102524197
Genome_Size_Range5:4-6 2.507e-1980184
Genome_Size_Range9:1-2 2.742e-95128
Genome_Size_Range9:2-3 0.000910013120
Genome_Size_Range9:4-5 1.364e-63896
Genome_Size_Range9:5-6 2.461e-104288
Gram_Stain:Gram_Neg 2.725e-26115333
Habitat:Specialized 0.0014500353
Motility:No 5.642e-116151
Motility:Yes 2.380e-1187267
Oxygen_Req:Anaerobic 2.110e-74102
Oxygen_Req:Facultative 1.105e-1275201
Pathogenic_in:No 0.000012727226
Pathogenic_in:Plant 0.00010341015
Pathogenic_in:Rice 0.008547633
Shape:Coccus 3.061e-8182
Shape:Rod 2.202e-15107347
Temp._range:Mesophilic 0.0036826107473
Temp._range:Psychrophilic 0.002979169
Temp._range:Thermophilic 0.0023306135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 227
Effective number of orgs (counting one per cluster within 468 clusters): 187

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSUI391296 ncbi Streptococcus suis 98HAH331
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMAR399550 ncbi Staphylothermus marinus F10
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP117 Pirellula sp.1
PMOB403833 ncbi Petrotoga mobilis SJ951
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40180
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG12878   EG11443   EG11323   EG11158   EG10697   
ZMOB264203 ZMO0215
WSUC273121
WPIP955
WPIP80849 WB_0397
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1835
TWHI218496 TW0223
TWHI203267 TW522
TTEN273068 TTE1280
TSP28240
TSP1755 TETH514_1522
TROS309801 TRD_0478
TPSE340099 TETH39_1085
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014 TK1426
TDEN326298 TMDEN_1524
TDEN243275 TDE_1641
TACI273075 TA0878
SWOL335541 SWOL_1864
STRO369723 STROP_3058
STOK273063
STHE292459 STH1192
SSUI391296 SSU98_1458
SSP387093
SSOL273057
SSAP342451 SSP0568
SPYO370554 MGAS10750_SPY0787
SPYO370553 MGAS2096_SPY0767
SPYO370552 MGAS10270_SPY0753
SPYO370551 MGAS9429_SPY0751
SPYO319701 M28_SPY0675
SPYO293653 M5005_SPY0695
SPYO286636 M6_SPY0712
SPYO198466 SPYM3_0608
SPYO193567 SPS1245
SPYO186103 SPYM18_0950
SPYO160490 SPY0889
SMAR399550
SFUM335543
SERY405948
SARE391037 SARE_3284
SALA317655 SALA_0089
SACI56780
SACI330779
RTYP257363
RSP357808 ROSERS_2910
RSAL288705 RSAL33209_1199
RRUB269796 RRU_A1084
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTHE370438 PTH_2652
PSP117 RB5405
PMOB403833 PMOB_1485
PLUT319225 PLUT_1015
PISL384616 PISL_1200
PGIN242619 PG_1854
PFUR186497 PF1258
PCAR338963 PCAR_2351
PAST100379 PAM245
PARS340102 PARS_0187
PAER178306 PAE1027
PABY272844 PAB0522
OTSU357244
NSP387092 NIS_0431
NSEN222891 NSE_0133
NPHA348780 NP0786A
NFAR247156 NFA49540
MVAN350058 MVAN_4834
MTUB419947
MTUB336982
MTHE349307 MTHE_0364
MTHE187420 MTH608
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_0995
MSP189918 MKMS_4377
MSP164757 MJLS_4669
MSP164756 MMCS_4291
MSME246196 MSMEG_5472
MSED399549
MPUL272635 MYPU_4880
MPNE272634
MPEN272633
MMOB267748 MMOB5500
MMAZ192952 MM0073
MMAR444158 MMARC6_1484
MMAR426368 MMARC7_0436
MMAR402880 MMARC5_0401
MMAR267377 MMP1189
MMAG342108 AMB3224
MLEP272631
MKAN190192
MJAN243232 MJ_1603
MHYO295358 MHP680
MHYO262722 MHP7448_0659
MHYO262719 MHJ_0659
MGIL350054 MFLV_1896
MGEN243273
MCAP340047 MCAP_0467
MBUR259564 MBUR_0773
MBOV410289
MBOV233413
MBAR269797 MBAR_A3172
MAVI243243 MAV_1101
MART243272
MAEO419665 MAEO_0737
MACE188937 MA1683
MABS561007 MAB_1085C
LLAC272622 LACR_2538
LINT363253 LI0770
LINT267671 LIC_11313
LINT189518 LA2687
LDEL390333 LDB0531
LDEL321956 LBUL_0472
LCAS321967 LSEI_2675
LBRE387344 LVIS_0574
LBOR355277 LBJ_1022
LBOR355276 LBL_2012
LBIF456481 LEPBI_I1788
LBIF355278 LBF_1735
IHOS453591
HWAL362976 HQ3679A
HSP64091 VNG2272G
HSAL478009 OE4185F
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_1135
HMAR272569 RRNAC2572
HHEP235279
HBUT415426 HBUT_0451
HAUR316274 HAUR_2751
HACI382638
FSUC59374 FSU0417
FNUC190304 FN1949
FNOD381764
FMAG334413 FMG_1186
FJOH376686 FJOH_0276
ERUM302409 ERGA_CDS_05030
ERUM254945 ERWE_CDS_05120
ELIT314225 ELI_05190
ECHA205920 ECH_0541
ECAN269484 ECAJ_0492
DVUL882 DVU_0366
DSP255470
DSP216389
DRED349161 DRED_2882
DPSY177439 DP0646
DOLE96561 DOLE_2744
DHAF138119 DSY3972
DGEO319795 DGEO_1265
DETH243164
DDES207559 DDE_0811
CTRA471473 CTLON_0460
CTRA471472 CTL0465
CTEP194439 CT_1048
CSUL444179
CPRO264201 PC1175
CPNE182082
CPNE138677
CPNE115713 CPN0141
CPNE115711 CP_0631
CPHY357809 CPHY_2601
CPEL335992
CMUR243161 TC_0485
CMAQ397948 CMAQ_0742
CKLU431943 CKL_1490
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1526
CHYD246194 CHY_0730
CHOM360107
CGLU196627
CFET360106
CFEL264202 CF0371
CEFF196164
CDIP257309 DIP1341
CDIF272563 CD3456
CDES477974 DAUD_2011
CCUR360105
CCON360104
CCHL340177 CAG_0899
CCAV227941 CCA_00632
CBOT508765 CLL_A0346
CABO218497 CAB606
BXEN266265
BTUR314724
BSP107806 BU411
BQUI283165 BQ06820
BMEL359391 BAB1_1735
BHER314723
BHEN283166 BH06410
BGAR290434
BBUR224326
BBAC360095 BARBAKC583_0602
BBAC264462 BD0202
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042 APH_0693
APER272557
AORE350688 CLOS_2263
AMAR234826 AM606
ALAI441768 ACL_0848
AFUL224325 AF_0943
ABUT367737
ABAC204669 ACID345_3224
AAEO224324 AQ_1731


Organism features enriched in list (features available for 217 out of the 227 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0033425117
Arrangment:Pairs 5.656e-720112
Disease:Pharyngitis 0.000339388
Disease:Wide_range_of_infections 0.00001611111
Disease:bronchitis_and_pneumonitis 0.000339388
Endospores:No 5.045e-16124211
GC_Content_Range4:0-40 2.257e-6105213
GC_Content_Range4:60-100 0.000239337145
GC_Content_Range7:0-30 0.00023212947
GC_Content_Range7:30-40 0.002070776166
GC_Content_Range7:50-60 0.000710626107
GC_Content_Range7:60-70 0.000747135134
Genome_Size_Range5:0-2 1.078e-24111155
Genome_Size_Range5:4-6 6.175e-1528184
Genome_Size_Range5:6-10 0.0010905847
Genome_Size_Range9:0-1 0.00001142127
Genome_Size_Range9:1-2 4.451e-1890128
Genome_Size_Range9:4-5 3.932e-61796
Genome_Size_Range9:5-6 2.327e-81188
Genome_Size_Range9:6-8 0.0019705638
Gram_Stain:Gram_Neg 0.0001828104333
Habitat:Host-associated 0.000100897206
Habitat:Multiple 3.098e-740178
Habitat:Specialized 0.00006513353
Habitat:Terrestrial 0.0017200431
Motility:No 0.000387573151
Motility:Yes 0.000260680267
Optimal_temp.:25-30 0.0079484219
Optimal_temp.:30 0.0076877115
Optimal_temp.:37 0.001963852106
Oxygen_Req:Anaerobic 1.451e-965102
Oxygen_Req:Facultative 2.669e-943201
Oxygen_Req:Microaerophilic 0.00038911418
Pathogenic_in:Plant 0.0076877115
Shape:Irregular_coccus 1.040e-61617
Shape:Rod 4.078e-996347
Shape:Sphere 0.00094721419
Shape:Spiral 9.780e-133234
Temp._range:Hyperthermophilic 2.688e-92223
Temp._range:Mesophilic 0.0002103160473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120840.6053
GLYCOCAT-PWY (glycogen degradation I)2461160.5416
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181080.5355
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951000.5219
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.5131
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901210.4995
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911210.4978
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961220.4972
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251050.4950
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94630.4911
PWY-5148 (acyl-CoA hydrolysis)2271050.4907
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001220.4905
GLUCONSUPER-PWY (D-gluconate degradation)2291040.4781
GALACTITOLCAT-PWY (galactitol degradation)73520.4626
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491070.4621
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491070.4621
PWY-5918 (heme biosynthesis I)2721120.4592
PWY-1269 (CMP-KDO biosynthesis I)3251230.4581
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861140.4503
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176860.4474
PWY-5386 (methylglyoxal degradation I)3051170.4422
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96590.4381
ECASYN-PWY (enterobacterial common antigen biosynthesis)191890.4366
PWY-4041 (γ-glutamyl cycle)2791100.4305
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481230.4235
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4152
PWY-46 (putrescine biosynthesis III)138710.4147
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391200.4127
PWY0-1299 (arginine dependent acid resistance)199880.4093
GLUTDEG-PWY (glutamate degradation II)194860.4036
PWY0-1182 (trehalose degradation II (trehalase))70460.4029
KDOSYN-PWY (KDO transfer to lipid IVA I)180820.4020
PWY-5913 (TCA cycle variation IV)3011110.4008



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11443   EG11323   EG11158   EG10697   
EG128780.9990720.9996190.999650.999341
EG114430.9990520.9989360.998577
EG113230.9995620.99957
EG111580.9992
EG10697



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PAIRWISE BLAST SCORES:

  EG12878   EG11443   EG11323   EG11158   EG10697   
EG128780.0f0----
EG11443-0.0f0---
EG11323--0.0f0--
EG11158---0.0f0-
EG10697----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10697 EG11158 EG11323 EG12878 (centered at EG12878)
EG11443 (centered at EG11443)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12878   EG11443   EG11323   EG11158   EG10697   
136/623406/623130/623399/623322/623
AAEO224324:0:Tyes---0-
AAUR290340:2:Tyes---790
AAVE397945:0:Tyes0907--2995
ABAC204669:0:Tyes----0
ABAU360910:0:Tyes-2083-02610
ABOR393595:0:Tyes-6140
ACAU438753:0:Tyes-1876-0-
ACEL351607:0:Tyes---0503
ACRY349163:8:Tyes-0-1233-
ADEH290397:0:Tyes---02260
AEHR187272:0:Tyes24360243824352439
AFER243159:0:Tyes-2085-6490
AFUL224325:0:Tyes-0---
AHYD196024:0:Tyes15362523153725220
ALAI441768:0:Tyes----0
AMAR234826:0:Tyes---0-
AMAR329726:9:Tyes-0-21371366
AMET293826:0:Tyes---15790
ANAE240017:0:Tyes---15400
AORE350688:0:Tyes---0-
APHA212042:0:Tyes---0-
APLE416269:0:Tyes1136220554
APLE434271:0:Tno1135520517
ASAL382245:5:Tyes95909581-
ASP1667:3:Tyes---780
ASP232721:2:Tyes-0--1799
ASP62928:0:Tyes02237--2301
ASP62977:0:Tyes-2389010
ASP76114:2:Tyes-0--34
AVAR240292:3:Tyes-2399-0681
BABO262698:1:Tno-0-679-
BAMB339670:3:Tno-883-25460
BAMB398577:3:Tno-868-23600
BAMY326423:0:Tyes---420
BANT260799:0:Tno-834-23880
BANT261594:2:Tno-827-23880
BANT568206:2:Tyes-0-2643883
BANT592021:2:Tno-881-25180
BAPH198804:0:Tyes-1-0-
BAPH372461:0:Tyes01---
BBAC264462:0:Tyes----0
BBAC360095:0:Tyes-0---
BBRO257310:0:Tyes-3230-03826
BCAN483179:1:Tno-0-709-
BCEN331271:2:Tno-875-22340
BCEN331272:3:Tyes-853-23350
BCER226900:1:Tyes-948-23760
BCER288681:0:Tno-803-22890
BCER315749:1:Tyes---960
BCER405917:1:Tyes-783-22280
BCER572264:1:Tno-904-23830
BCIC186490:0:Tyes-0-1-
BCLA66692:0:Tyes-1642-0763
BFRA272559:1:Tyes---03217
BFRA295405:0:Tno---03456
BHAL272558:0:Tyes---01385
BHEN283166:0:Tyes-0---
BJAP224911:0:Fyes-2234-0-
BLIC279010:0:Tyes---470
BLON206672:0:Tyes-278--0
BMAL243160:1:Tno-0-1856984
BMAL320388:1:Tno-1441-26500
BMAL320389:1:Tyes-0-23001488
BMEL224914:1:Tno-679-0-
BMEL359391:1:Tno---0-
BOVI236:1:Tyes-0-608-
BPAR257311:0:Tno-1426-03204
BPER257313:0:Tyes-0-666976
BPET94624:0:Tyes-1051-38840
BPSE272560:1:Tyes-1605-02646
BPSE320372:1:Tno-1640-03075
BPSE320373:1:Tno-1499-02990
BPUM315750:0:Tyes---420
BQUI283165:0:Tyes-0---
BSP107806:2:Tyes-0---
BSP36773:2:Tyes-928-26440
BSP376:0:Tyes-3407-0-
BSUB:0:Tyes---460
BSUI204722:1:Tyes-0-690-
BSUI470137:0:Tno---0-
BSUI470137:1:Tno-0---
BTHA271848:1:Tno-2248-01012
BTHE226186:0:Tyes---17680
BTHU281309:1:Tno-808-22530
BTHU412694:1:Tno-788-20760
BTRI382640:1:Tyes-0-906-
BVIE269482:7:Tyes-848-24390
BWEI315730:4:Tyes-800-22820
CABO218497:0:Tyes-0---
CACE272562:1:Tyes---01698
CAULO:0:Tyes-0-957-
CBEI290402:0:Tyes-2284-2360
CBLO203907:0:Tyes20-1-
CBLO291272:0:Tno20-1-
CBOT36826:1:Tno---20380
CBOT441770:0:Tyes---19280
CBOT441771:0:Tno---19690
CBOT441772:1:Tno---20050
CBOT498213:1:Tno---20330
CBOT508765:1:Tyes---0-
CBOT515621:2:Tyes---21880
CBOT536232:0:Tno---22530
CBUR227377:1:Tyes380-37-
CBUR360115:1:Tno01942-1-
CBUR434922:2:Tno18060-1807-
CCAV227941:1:Tyes-0---
CCHL340177:0:Tyes---0-
CDES477974:0:Tyes---0-
CDIF272563:1:Tyes---0-
CDIP257309:0:Tyes----0
CFEL264202:1:Tyes-0---
CHUT269798:0:Tyes---02303
CHYD246194:0:Tyes---0-
CJAP155077:0:Tyes530555156
CJEI306537:0:Tyes---0-
CKLU431943:1:Tyes---0-
CKOR374847:0:Tyes-0--852
CMAQ397948:0:Tyes-0---
CMET456442:0:Tyes-0-76-
CMIC31964:2:Tyes---01799
CMIC443906:2:Tyes---12880
CMUR243161:1:Tyes-0---
CNOV386415:0:Tyes---01343
CPER195102:1:Tyes---0223
CPER195103:0:Tno---0204
CPER289380:3:Tyes---0205
CPHY357809:0:Tyes---0-
CPNE115711:1:Tyes-0---
CPNE115713:0:Tno-0---
CPRO264201:0:Fyes-0---
CPSY167879:0:Tyes0276223063
CRUT413404:0:Tyes-106-7970
CSAL290398:0:Tyes30-25
CSP501479:8:Fyes-0-42-
CSP78:2:Tyes-2796-0-
CTEP194439:0:Tyes---0-
CTET212717:0:Tyes---0540
CTRA471472:0:Tyes-0---
CTRA471473:0:Tno-0---
CVES412965:0:Tyes-98-7240
CVIO243365:0:Tyes0783-12684
DARO159087:0:Tyes4670--102
DDES207559:0:Tyes----0
DGEO319795:1:Tyes-0---
DHAF138119:0:Tyes---0-
DNOD246195:0:Tyes283922857460
DOLE96561:0:Tyes---0-
DPSY177439:2:Tyes---0-
DRAD243230:3:Tyes-0--396
DRED349161:0:Tyes---0-
DSHI398580:5:Tyes-0-31-
DVUL882:1:Tyes---0-
ECAN269484:0:Tyes---0-
ECAR218491:0:Tyes23493140
ECHA205920:0:Tyes---0-
ECOL199310:0:Tno25130
ECOL316407:0:Tno27140
ECOL331111:6:Tno25130
ECOL362663:0:Tno25130
ECOL364106:1:Tno36140
ECOL405955:2:Tyes25130
ECOL409438:6:Tyes25130
ECOL413997:0:Tno25130
ECOL439855:4:Tno25130
ECOL469008:0:Tno30425
ECOL481805:0:Tno40526
ECOL585034:0:Tno29150
ECOL585035:0:Tno28140
ECOL585055:0:Tno28140
ECOL585056:2:Tno28140
ECOL585057:0:Tno27140
ECOL585397:0:Tno28140
ECOL83334:0:Tno27140
ECOLI:0:Tno28140
ECOO157:0:Tno27140
EFAE226185:3:Tyes-0-2433720
EFER585054:1:Tyes29150
ELIT314225:0:Tyes---0-
ERUM254945:0:Tyes---0-
ERUM302409:0:Tno---0-
ESP42895:1:Tyes25130
FALN326424:0:Tyes---6900
FJOH376686:0:Tyes----0
FMAG334413:1:Tyes---0-
FNUC190304:0:Tyes----0
FPHI484022:1:Tyes-013851384-
FRANT:0:Tno-01112-
FSP106370:0:Tyes---5480
FSP1855:0:Tyes---0564
FSUC59374:0:Tyes-0---
FTUL351581:0:Tno-910-
FTUL393011:0:Tno-1010-
FTUL393115:0:Tyes-01011-
FTUL401614:0:Tyes-05354-
FTUL418136:0:Tno-43910-
FTUL458234:0:Tno-1010-
GBET391165:0:Tyes-0-236-
GFOR411154:0:Tyes---23260
GKAU235909:1:Tyes---380
GMET269799:1:Tyes---1920
GOXY290633:5:Tyes-1471-0-
GSUL243231:0:Tyes---0880
GTHE420246:1:Tyes---450
GURA351605:0:Tyes---0715
GVIO251221:0:Tyes-0-73663
HARS204773:0:Tyes-679-24380
HAUR316274:2:Tyes----0
HBUT415426:0:Tyes----0
HCHE349521:0:Tyes30728
HDUC233412:0:Tyes7160717-1065
HHAL349124:0:Tyes60859
HINF281310:0:Tyes4040365405364
HINF374930:0:Tyes12380127812371279
HINF71421:0:Tno3900350391349
HMAR272569:8:Tyes-0---
HMOD498761:0:Tyes---12150
HMUK485914:1:Tyes-0---
HNEP81032:0:Tyes-0-1864-
HSAL478009:4:Tyes-0---
HSOM205914:1:Tyes5690568570567
HSOM228400:0:Tno2916130
HSP64091:2:Tno-0---
HWAL362976:1:Tyes-0---
ILOI283942:0:Tyes26150
JSP290400:1:Tyes-0-213-
JSP375286:0:Tyes-1927-28170
KPNE272620:2:Tyes26130
KRAD266940:2:Fyes---20140
LACI272621:0:Tyes-0-864700
LBIF355278:2:Tyes----0
LBIF456481:2:Tno----0
LBOR355276:1:Tyes----0
LBOR355277:1:Tno----0
LBRE387344:2:Tyes-0---
LCAS321967:1:Tyes-0---
LCHO395495:0:Tyes-951-0-
LDEL321956:0:Tyes-0---
LDEL390333:0:Tyes-0---
LGAS324831:0:Tyes-0-793-
LHEL405566:0:Tyes-0-731-
LINN272626:1:Tno-0--639
LINT189518:1:Tyes----0
LINT267671:1:Tno----0
LINT363253:3:Tyes---0-
LJOH257314:0:Tyes-0-778-
LLAC272622:5:Tyes-0---
LLAC272623:0:Tyes-1542--0
LMES203120:1:Tyes-4-0521
LMON169963:0:Tno-0-362604
LMON265669:0:Tyes-0-355602
LPLA220668:0:Tyes-0-828-
LPNE272624:0:Tno-1805151
LPNE297245:1:Fno-1505511
LPNE297246:1:Fyes-1805571
LPNE400673:0:Tno-15025561
LREU557436:0:Tyes-0-945923
LSAK314315:0:Tyes-364-0-
LSPH444177:1:Tyes---34100
LWEL386043:0:Tyes-0-393633
LXYL281090:0:Tyes---0261
MABS561007:1:Tyes---0-
MACE188937:0:Tyes-0---
MAEO419665:0:Tyes-0---
MAER449447:0:Tyes-0-56241077
MAQU351348:2:Tyes710180
MAVI243243:0:Tyes---0-
MBAR269797:1:Tyes-0---
MBUR259564:0:Tyes-0---
MCAP243233:0:Tyes22850228422862283
MCAP340047:0:Tyes---0-
MEXT419610:0:Tyes-0-65-
MFLA265072:0:Tyes05--2018
MFLO265311:0:Tyes---0132
MGIL350054:3:Tyes---0-
MHUN323259:0:Tyes-0-247-
MHYO262719:0:Tyes----0
MHYO262722:0:Tno----0
MHYO295358:0:Tno----0
MJAN243232:2:Tyes-0---
MLAB410358:0:Tyes-0-847-
MLOT266835:2:Tyes-134-0-
MMAG342108:0:Tyes---0-
MMAR267377:0:Tyes-0---
MMAR368407:0:Tyes-0-177-
MMAR394221:0:Tyes-0-1470-
MMAR402880:1:Tyes-0---
MMAR426368:0:Tyes-0---
MMAR444158:0:Tyes-0---
MMAZ192952:0:Tyes-0---
MMOB267748:0:Tyes----0
MMYC272632:0:Tyes---1390
MPET420662:1:Tyes-1874-30300
MPUL272635:0:Tyes----0
MSME246196:0:Tyes---0-
MSP164756:1:Tno---0-
MSP164757:0:Tno---0-
MSP189918:2:Tyes---0-
MSP266779:3:Tyes-0-1740-
MSP400668:0:Tyes13059267202671
MSP409:2:Tyes-1819-0-
MSTA339860:0:Tyes-0---
MSUC221988:0:Tyes21313304
MTHE187420:0:Tyes-0---
MTHE264732:0:Tyes---5840
MTHE349307:0:Tyes-0---
MVAN350058:0:Tyes---0-
MXAN246197:0:Tyes-3345-9220
NARO279238:0:Tyes---18420
NEUR228410:0:Tyes1520--414
NEUT335283:2:Tyes-0-467258
NFAR247156:2:Tyes---0-
NGON242231:0:Tyes9750-930-
NHAM323097:2:Tyes-0-1992-
NMEN122586:0:Tno5290-568-
NMEN122587:0:Tyes461292-0-
NMEN272831:0:Tno5290-566-
NMEN374833:0:Tno01269-1910-
NMUL323848:3:Tyes496307--0
NOCE323261:1:Tyes0932-3
NPHA348780:2:Tyes-0---
NSEN222891:0:Tyes---0-
NSP103690:6:Tyes-626-46030
NSP35761:1:Tyes---0572
NSP387092:0:Tyes----0
NWIN323098:0:Tyes-0-1529-
OANT439375:5:Tyes-926-0-
OCAR504832:0:Tyes-0-775-
OIHE221109:0:Tyes-725-280
PABY272844:0:Tyes-0---
PACN267747:0:Tyes---0166
PAER178306:0:Tyes-0---
PAER208963:0:Tyes52650526352665262
PAER208964:0:Tno49630496149644960
PARC259536:0:Tyes-0822711-
PARS340102:0:Tyes-0---
PAST100379:0:Tyes----0
PATL342610:0:Tyes-6150
PCAR338963:0:Tyes---0-
PCRY335284:1:Tyes-0587431-
PDIS435591:0:Tyes---0889
PENT384676:0:Tyes700-7167
PFLU205922:0:Tyes550-5652
PFLU216595:1:Tyes570555854
PFLU220664:0:Tyes640636562
PFUR186497:0:Tyes-0---
PGIN242619:0:Tyes---0-
PHAL326442:1:Tyes0372268373269
PHOR70601:0:Tyes-422--0
PING357804:0:Tyes30415
PINT246198:1:Tyes---0397
PISL384616:0:Tyes-0---
PLUM243265:0:Fyes25130
PLUT319225:0:Tyes---0-
PMAR146891:0:Tyes-49--0
PMAR167539:0:Tyes-49--0
PMAR167540:0:Tyes-47--0
PMAR167542:0:Tyes-48--0
PMAR167546:0:Tyes-48--0
PMAR167555:0:Tyes-49--0
PMAR59920:0:Tno-47--0
PMAR74546:0:Tyes-47--0
PMAR74547:0:Tyes-377-0322
PMAR93060:0:Tyes-48--0
PMEN399739:0:Tyes13948304
PMOB403833:0:Tyes----0
PMUL272843:1:Tyes520535154
PNAP365044:8:Tyes-0--1449
PPEN278197:0:Tyes-747-0-
PPRO298386:2:Tyes1302-
PPUT160488:0:Tno520515350
PPUT351746:0:Tyes530515450
PPUT76869:0:Tno600-6257
PRUM264731:0:Tyes---0351
PSP117:0:Tyes---0-
PSP296591:2:Tyes-0--1951
PSP312153:0:Tyes-0--611
PSP56811:2:Tyes1110011081207-
PSTU379731:0:Tyes-0365036523649
PSYR205918:0:Tyes-4547304
PSYR223283:2:Tyes-66140
PTHE370438:0:Tyes---0-
PTOR263820:0:Tyes-0--436
RCAS383372:0:Tyes-0--1452
RDEN375451:4:Tyes-0-88-
RETL347834:5:Tyes-0-1074-
REUT264198:3:Tyes-1574--0
REUT381666:2:Tyes-1785--0
RFER338969:1:Tyes-2120--0
RLEG216596:6:Tyes-0-1281-
RMET266264:2:Tyes-1086--0
RPAL258594:0:Tyes-0-2497-
RPAL316055:0:Tyes27190-2763-
RPAL316056:0:Tyes-0-2747-
RPAL316057:0:Tyes-0-2145-
RPAL316058:0:Tyes10760-902-
RPOM246200:1:Tyes-0-1594-
RRUB269796:1:Tyes---0-
RSAL288705:0:Tyes----0
RSOL267608:1:Tyes-743--0
RSP101510:3:Fyes-0--4235
RSP357808:0:Tyes-0---
RSPH272943:4:Tyes-1512-0-
RSPH349101:2:Tno-1465-0-
RSPH349102:5:Tyes-581-0-
RXYL266117:0:Tyes-0-597-
SAGA205921:0:Tno-763-0-
SAGA208435:0:Tno-760-0-
SAGA211110:0:Tyes-810-01297
SALA317655:1:Tyes-0---
SARE391037:0:Tyes----0
SAUR158878:1:Tno-838-0-
SAUR158879:1:Tno-859-200
SAUR196620:0:Tno-827-200
SAUR273036:0:Tno-839-190
SAUR282458:0:Tno-834-200
SAUR282459:0:Tno-812-200
SAUR359786:1:Tno-813-200
SAUR359787:1:Tno-760-210
SAUR367830:3:Tno-732-190
SAUR418127:0:Tyes-857-200
SAUR426430:0:Tno-853-190
SAUR93061:0:Fno-979-220
SAUR93062:1:Tno-725-190
SAVE227882:1:Fyes---0575
SBAL399599:3:Tyes38823593388138840
SBAL402882:1:Tno37363446373537370
SBOY300268:1:Tyes30425
SCO:2:Fyes---0794
SDEG203122:0:Tyes1290-130126
SDEN318161:0:Tyes126620-
SDYS300267:1:Tyes30425
SELO269084:0:Tyes-703-01202
SENT209261:0:Tno26140
SENT220341:0:Tno26140
SENT295319:0:Tno27140
SENT321314:2:Tno25130
SENT454169:2:Tno25130
SEPI176279:1:Tyes-795-0-
SEPI176280:0:Tno-728-0-
SFLE198214:0:Tyes26140
SFLE373384:0:Tno25130
SGLO343509:3:Tyes25130
SGOR29390:0:Tyes-0--586
SHAE279808:0:Tyes-0-689-
SHAL458817:0:Tyes25880258725951744
SHIGELLA:0:Tno26140
SLAC55218:1:Fyes-232-0-
SLOI323850:0:Tyes23190231823201589
SMED366394:3:Tyes-0-1062-
SMEL266834:2:Tyes-0-913-
SMUT210007:0:Tyes-845-01423
SONE211586:1:Tyes74311147447420
SPEA398579:0:Tno2604026022607936
SPNE1313:0:Tyes-0-1249-
SPNE170187:0:Tyes-0-330-
SPNE171101:0:Tno-0-1233-
SPNE487213:0:Tno-0-647-
SPNE487214:0:Tno-0-1272-
SPNE488221:0:Tno-0-1224-
SPRO399741:1:Tyes25130
SPYO160490:0:Tno-0---
SPYO186103:0:Tno-0---
SPYO193567:0:Tno-0---
SPYO198466:0:Tno-0---
SPYO286636:0:Tno-0---
SPYO293653:0:Tno-0---
SPYO319701:0:Tyes-0---
SPYO370551:0:Tno-0---
SPYO370552:0:Tno-0---
SPYO370553:0:Tno-0---
SPYO370554:0:Tyes-0---
SRUB309807:1:Tyes-0-10991270
SSAP342451:2:Tyes-0---
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