CANDIDATE ID: 601

CANDIDATE ID: 601

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9943620e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7484 (ygeR) (b2865)
   Products of gene:
     - G7484-MONOMER (putative lipoprotein; predicted DNA-binding transcriptional regulator)

- EG12111 (nlpD) (b2742)
   Products of gene:
     - EG12111-MONOMER (NlpD putative outer membrane lipoprotein)

- EG11817 (surE) (b2744)
   Products of gene:
     - EG11817-MONOMER (broad specificity 5'(3')-nucleotidase and polyphosphatase)
       Reactions:
        a nucleoside 3'-phosphate + H2O  =  a ribonucleoside + phosphate
        a ribonucleoside monophosphate + H2O  =  a ribonucleoside + phosphate
         In pathways
         P165-PWY (P165-PWY)
         PWY-5043 (PWY-5043)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)

- EG11247 (rlmD) (b2785)
   Products of gene:
     - EG11247-MONOMER (23S rRNA m5U1939 methyltransferase)
       Reactions:
        uracil1939 in 23S rRNA + S-adenosyl-L-methionine  ->  5-methyluracil1939 in 23S rRNA + S-adenosyl-L-homocysteine

- EG10689 (pcm) (b2743)
   Products of gene:
     - EG10689-MONOMER (L-isoaspartate protein carboxylmethyltransferase type II)
       Reactions:
        S-adenosyl-L-methionine + a protein L-beta-isoaspartate  ->  S-adenosyl-L-homocysteine + a protein L-beta-isoaspartate alpha-methyl ester



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 249
Effective number of orgs (counting one per cluster within 468 clusters): 175

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP28240 Thermotoga sp.4
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
TPET390874 ncbi Thermotoga petrophila RKU-14
TMAR243274 ncbi Thermotoga maritima MSB84
TERY203124 ncbi Trichodesmium erythraeum IMS1014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-35
SSP84588 ncbi Synechococcus sp. WH 81024
SSP64471 ncbi Synechococcus sp. CC93114
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)5
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSP1148 ncbi Synechocystis sp. PCC 68034
SSP1131 Synechococcus sp. CC96054
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SELO269084 ncbi Synechococcus elongatus PCC 63014
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 424
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OCAR504832 ncbi Oligotropha carboxidovorans OM55
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MXAN246197 ncbi Myxococcus xanthus DK 16225
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL15
MSP266779 ncbi Chelativorans sp. BNC15
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS104
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA14
MAQU351348 ncbi Marinobacter aquaeolei VT85
MAER449447 ncbi Microcystis aeruginosa NIES-8434
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1304
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566014
LCHO395495 ncbi Leptothrix cholodnii SP-65
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1974
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5504
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237795
HARS204773 ncbi Herminiimonas arsenicoxydans5
GVIO251221 ncbi Gloeobacter violaceus PCC 74215
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B15
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-14
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CAULO ncbi Caulobacter crescentus CB155
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N5
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  G7484   EG12111   EG11817   EG11247   EG10689   
YPSE349747 YPSIP31758_3294YPSIP31758_3294YPSIP31758_3296YPSIP31758_3295
YPSE273123 YPTB0775YPTB0775YPTB0773YPTB0774
YPES386656 YPDSF_3004YPDSF_3004YPDSF_3002YPDSF_3003
YPES377628 YPN_0737YPN_0737YPN_0735YPN_0736
YPES360102 YPA_2787YPA_2787YPA_2785YPA_2786
YPES349746 YPANGOLA_A0959YPANGOLA_A0959YPANGOLA_A0961YPANGOLA_A0960
YPES214092 YPO3356YPO3356YPO3358YPO3357
YPES187410 Y0833Y0833Y0831Y0832
YENT393305 YE2451YE0774YE0772YE0743YE0773
XORY360094 XOOORF_1714XOOORF_1714XOOORF_1711XOOORF_3142XOOORF_1712
XORY342109 XOO2805XOO2805XOO2808XOO1755XOO2807
XORY291331 XOO2953XOO2953XOO2956XOO1859XOO2955
XFAS405440 XFASM12_1995XFASM12_1995XFASM12_1992XFASM12_1527XFASM12_1993
XFAS183190 PD_1820PD_1820PD_1817PD_1385PD_1818
XFAS160492 XF0855XF0855XF0858XF2358XF0857
XCAM487884 XCC-B100_2550XCC-B100_2550XCC-B100_2553XCC-B100_3026XCC-B100_2552
XCAM316273 XCAORF_1945XCAORF_1945XCAORF_1942XCAORF_1532XCAORF_1943
XCAM314565 XC_2522XC_2522XC_2525XC_2964XC_2524
XCAM190485 XCC1709XCC1709XCC1706XCC1277XCC1707
XAXO190486 XAC1728XAC1728XAC1725XAC1329XAC1726
XAUT78245 XAUT_4412XAUT_4412XAUT_4403XAUT_4164XAUT_4414
VVUL216895 VV1_1587VV1_1587VV1_1585VV1_1574VV1_1586
VVUL196600 VV2810VV2810VV2812VV2822VV2811
VPAR223926 VP2554VP2554VP2556VP2566VP2555
VFIS312309 VF2068VF2068VF2070VF2081VF2069
VEIS391735 VEIS_0088VEIS_0088VEIS_0090VEIS_3067VEIS_0089
VCHO345073 VC0395_A0061VC0395_A0061VC0395_A0059VC0395_A2030VC0395_A0060
VCHO VC0533VC0533VC0531VC2452VC0532
TTEN273068 TTE2691TTE2691TTE1338TTE1812
TSP28240 TRQ2_0525TRQ2_1167TRQ2_1722TRQ2_0224
TSP1755 TETH514_2345TETH514_1048TETH514_1585TETH514_1197
TPSE340099 TETH39_0101TETH39_0061TETH39_1148TETH39_0686
TPET390874 TPET_0511TPET_1129TPET_1649TPET_0226
TMAR243274 TM_0409TM_1662TM_1094TM_0704
TERY203124 TERY_0237TERY_0237TERY_3481TERY_4802
TDEN292415 TBD_0837TBD_0837TBD_0835TBD_0970TBD_0836
TCRU317025 TCR_1254TCR_1254TCR_1257TCR_2194TCR_1069
SWOL335541 SWOL_2406SWOL_2406SWOL_1150SWOL_2225SWOL_2438
STYP99287 STM3038STM2925STM2927STM2957STM2926
STHE292459 STH3311STH68STH1714STH2818
SSP94122 SHEWANA3_1123SHEWANA3_1123SHEWANA3_1121SHEWANA3_1110SHEWANA3_1122
SSP84588 SYNW1214OR3392SYNW1214OR3392SYNW1601OR0524SYNW1228OR3380
SSP64471 GSYN1429GSYN1429GSYN0842GSYN1444
SSP321332 CYB_1820CYB_1820CYB_0884CYB_0500CYB_2184
SSP321327 CYA_1895CYA_1895CYA_0967CYA_0025CYA_0908
SSP1148 SLR0993SLR0993SLL1108SLL1967
SSP1131 SYNCC9605_1326SYNCC9605_1326SYNCC9605_0899SYNCC9605_1340
SSON300269 SSO_3016SSO_2890SSO_2892SSO_2942SSO_2891
SSED425104 SSED_1297SSED_1297SSED_1295SSED_1286SSED_1296
SPRO399741 SPRO_0299SPRO_0831SPRO_0829SPRO_0830
SPEA398579 SPEA_1192SPEA_1192SPEA_1190SPEA_1181SPEA_1191
SONE211586 SO_3433SO_3433SO_3435SO_3456SO_3434
SMEL266834 SMC02060SMC02060SMC02063SMB20088
SMED366394 SMED_1171SMED_1171SMED_1168SMED_4048
SLOI323850 SHEW_1212SHEW_1212SHEW_1210SHEW_1201SHEW_1211
SHIGELLA S3067NLPDSUREYGCAPCM
SHAL458817 SHAL_1229SHAL_1229SHAL_1227SHAL_1218SHAL_1228
SGLO343509 SG0530SG0530SG0528SG0509SG0529
SFLE373384 SFV_2928SFV_2756SFV_2754SFV_2672SFV_2755
SFLE198214 AAN44353.1AAN44254.1AAN44256.1AAN44286.1AAN44255.1
SENT454169 SEHA_C3268SEHA_C3114SEHA_C3117SEHA_C3163SEHA_C3116
SENT321314 SCH_2978SCH_2857SCH_2859SCH_2897SCH_2858
SENT295319 SPA2906SPA2781SPA2783SPA2822SPA2782
SENT220341 STY3194STY3050STY3052STY3095STY3051
SENT209261 T2956T2826T2828T2866T2827
SELO269084 SYC0925_CSYC0925_CSYC2030_DSYC1272_C
SDYS300267 SDY_2941SDY_2941SDY_2943SDY_3002SDY_2942
SDEN318161 SDEN_1203SDEN_1203SDEN_1201SDEN_1192SDEN_1202
SBOY300268 SBO_3121SBO_2778SBO_2776SBO_2666SBO_2777
SBAL402882 SHEW185_3129SHEW185_3129SHEW185_3131SHEW185_3145SHEW185_3130
SBAL399599 SBAL195_3272SBAL195_3272SBAL195_3274SBAL195_3290SBAL195_3273
SACI56780 SYN_00999SYN_00999SYN_01984SYN_01023SYN_01000
RSPH349101 RSPH17029_1203RSPH17029_1205RSPH17029_2863RSPH17029_1204
RSOL267608 RSC1206RSC1206RSC1204RSC1209RSC1205
RRUB269796 RRU_A1767RRU_A1767RRU_A1769RRU_A1768
RPOM246200 SPO_2686SPO_2688SPO_0029SPO_2687
RPAL316058 RPB_2736RPB_2736RPB_2739RPB_4463RPB_2737
RPAL316057 RPD_2781RPD_2781RPD_2784RPD_4309RPD_2782
RPAL316056 RPC_2522RPC_2522RPC_2519RPC_1145RPC_2521
RPAL316055 RPE_2706RPE_2706RPE_2703RPE_1062RPE_2705
RPAL258594 RPA2837RPA2837RPA2841RPA0948RPA2838
RMET266264 RMET_2116RMET_2116RMET_2118RMET_2112RMET_2117
RLEG216596 RL2052RL2052RL2050RL0969PRL90108
RFER338969 RFER_2780RFER_2780RFER_2782RFER_2778RFER_2781
REUT381666 H16_A2374H16_A2374H16_A2376H16_A2370H16_A1622
REUT264198 REUT_A2096REUT_A2096REUT_A2098REUT_A2092REUT_A2097
RETL347834 RHE_CH01829RHE_CH01829RHE_CH01827RHE_PB00041
PTHE370438 PTH_2862PTH_2862PTH_1397PTH_1518PTH_2678
PSYR223283 PSPTO_1564PSPTO_1564PSPTO_1562PSPTO_1693PSPTO_1563
PSYR205918 PSYR_1373PSYR_1373PSYR_1371PSYR_3696PSYR_1372
PSTU379731 PST_1571PST_1571PST_1568PST_2670PST_1569
PSP312153 PNUC_1297PNUC_1297PNUC_1299PNUC_1295PNUC_1298
PSP296591 BPRO_3059BPRO_3059BPRO_3061BPRO_3057BPRO_4278
PPUT76869 PPUTGB1_1176PPUTGB1_1176PPUTGB1_1174PPUTGB1_1256PPUTGB1_1175
PPUT351746 PPUT_4155PPUT_4155PPUT_4157PPUT_4063PPUT_4156
PPUT160488 PP_1622PP_1622PP_1620PP_1655PP_1621
PPRO298386 PBPRA3072PBPRA3072PBPRA3074PBPRA3083PBPRA3073
PNAP365044 PNAP_2577PNAP_2577PNAP_2579PNAP_2576PNAP_2578
PMUL272843 PM1614PM1614PM1612PM1866
PMEN399739 PMEN_3021PMEN_3021PMEN_3024PMEN_1734PMEN_3023
PLUM243265 PLU0718PLU0718PLU0716PLU0909PLU0717
PING357804 PING_0676PING_0676PING_0675PING_0529
PHAL326442 PSHAA0690PSHAA0690PSHAA0687PSHAA0738PSHAA0688
PFLU220664 PFL_1206PFL_1206PFL_1204PFL_4447PFL_1205
PFLU216595 PFLU1301PFLU1301PFLU1299PFLU4506PFLU1300
PFLU205922 PFL_1131PFL_1131PFL_1129PFL_4218PFL_1130
PENT384676 PSEEN4190PSEEN4190PSEEN4192PSEEN1363PSEEN4191
PCRY335284 PCRYO_0661PCRYO_0661PCRYO_0660PCRYO_0378
PCAR338963 PCAR_1429PCAR_1429PCAR_1426PCAR_1551PCAR_1427
PATL342610 PATL_3863PATL_3863PATL_3860PATL_3861
PAER208964 PA3623PA3623PA3625PA0933PA3624
PAER208963 PA14_17470PA14_17470PA14_17450PA14_52190PA14_17460
OCAR504832 OCAR_6260OCAR_6260OCAR_6263OCAR_6897OCAR_6261
OANT439375 OANT_2339OANT_2339OANT_2341OANT_0549OANT_4285
NWIN323098 NWI_1772NWI_1772NWI_1775NWI_1773
NSP103690 ALR3353ALR3353ALR4846ALR3654
NOCE323261 NOC_0792NOC_0792NOC_0789NOC_0801NOC_0790
NMUL323848 NMUL_A0497NMUL_A0497NMUL_A0495NMUL_A2216NMUL_A0496
NMEN374833 NMCC_1394NMCC_1394NMCC_1395NMCC_0336
NMEN272831 NMC1418NMC1418NMC1419NMC0336
NMEN122587 NMA1692NMA1692NMA1693NMA0572
NMEN122586 NMB_1483NMB_1483NMB_1484NMB_1885
NHAM323097 NHAM_1795NHAM_1795NHAM_1792NHAM_1929
NGON242231 NGO1056NGO1056NGO1058NGO0019
NEUT335283 NEUT_2322NEUT_2322NEUT_2324NEUT_2323
NEUR228410 NE0948NE0948NE0950NE0949
MXAN246197 MXAN_4449MXAN_4449MXAN_4450MXAN_3787MXAN_3407
MTHE264732 MOTH_2401MOTH_2401MOTH_1144MOTH_1912
MSUC221988 MS2268MS2268MS2272MS0240
MSP409 M446_6574M446_6574M446_6576M446_6575
MSP400668 MMWYL1_1307MMWYL1_1307MMWYL1_1304MMWYL1_1252MMWYL1_1305
MSP266779 MESO_1800MESO_1800MESO_1802MESO_0737MESO_1801
MPET420662 MPE_A1254MPE_A1254MPE_A1252MPE_A1256MPE_A1253
MMAR394221 MMAR10_1901MMAR10_1901MMAR10_1904MMAR10_1903
MMAG342108 AMB2518AMB2518AMB2520AMB0328AMB2519
MLOT266835 MLL1077MLL1077MLL1080MLR7480MLL1078
MFLA265072 MFLA_1826MFLA_1826MFLA_1824MFLA_1851MFLA_1825
MEXT419610 MEXT_4231MEXT_4231MEXT_4233MEXT_4262
MAQU351348 MAQU_0929MAQU_0929MAQU_0926MAQU_2239MAQU_0927
MAER449447 MAE_24900MAE_24900MAE_50650MAE_35680
LPNE400673 LPC_0708LPC_0708LPC_0707LPC_0871LPC_2594
LPNE297246 LPP1246LPP1246LPP1245LPP1412LPP0755
LPNE297245 LPL1246LPL1246LPL1245LPL1572LPL0737
LPNE272624 LPG1283LPG1283LPG1282LPG1456LPG0700
LINT267671 LIC_13365LIC_12622LIC_13094LIC_12550
LINT189518 LA4213LA1043LA3873LA1131
LCHO395495 LCHO_1920LCHO_1920LCHO_1922LCHO_1919LCHO_1921
LBOR355277 LBJ_2835LBJ_0285LBJ_2481LBJ_2677
LBOR355276 LBL_0236LBL_2791LBL_0610LBL_0403
KPNE272620 GKPORF_B2672GKPORF_B2435GKPORF_B2437GKPORF_B2461GKPORF_B2436
JSP375286 MMA_2135MMA_2135MMA_2137MMA_2133MMA_2136
ILOI283942 IL0746IL0746IL0749IL0805IL0748
HSOM228400 HSM_0499HSM_0499HSM_0501HSM_1985
HSOM205914 HS_1502HS_1502HS_1500HS_0094
HMOD498761 HM1_1080HM1_1080HM1_2558HM1_2983
HINF71421 HI_0706HI_0706HI_0702HI_0333
HINF281310 NTHI0830NTHI0830NTHI0825NTHI0451
HHAL349124 HHAL_1428HHAL_1428HHAL_1431HHAL_0028HHAL_1430
HDUC233412 HD_0755HD_0755HD_0758HD_1765
HCHE349521 HCH_01876HCH_01876HCH_01872HCH_01806HCH_01874
HAUR316274 HAUR_4026HAUR_4026HAUR_4690HAUR_0615HAUR_1925
HARS204773 HEAR1256HEAR1256HEAR1254HEAR1258HEAR1255
GVIO251221 GLL1142GLL1142GLL0444GLL3134GLR1699
FNOD381764 FNOD_1658FNOD_1658FNOD_0953FNOD_0340FNOD_0742
ESP42895 ENT638_3306ENT638_3213ENT638_3215ENT638_3237ENT638_3214
ELIT314225 ELI_00600ELI_00600ELI_00605ELI_06895
EFER585054 EFER_2807EFER_0327EFER_0324EFER_0279EFER_0325
ECOO157 Z4203NLPDSUREYGCAPCM
ECOL83334 ECS3738ECS3596ECS3598ECS3645ECS3597
ECOL585397 ECED1_3325ECED1_3197ECED1_3200ECED1_3238ECED1_3199
ECOL585057 ECIAI39_3280ECIAI39_2930ECIAI39_2933ECIAI39_3204ECIAI39_2932
ECOL585056 ECUMN_3208ECUMN_3065ECUMN_3068ECUMN_3114ECUMN_3067
ECOL585055 EC55989_3152EC55989_3013EC55989_3016EC55989_3060EC55989_3015
ECOL585035 ECS88_3143ECS88_3011ECS88_3014ECS88_3053ECS88_3013
ECOL585034 ECIAI1_2984ECIAI1_2842ECIAI1_2845ECIAI1_2893ECIAI1_2844
ECOL481805 ECOLC_0843ECOLC_0970ECOLC_0968ECOLC_0927ECOLC_0969
ECOL469008 ECBD_0872ECBD_0982ECBD_0980ECBD_0944ECBD_0981
ECOL439855 ECSMS35_2998ECSMS35_2867ECSMS35_2869ECSMS35_2923ECSMS35_2868
ECOL413997 ECB_02698ECB_02592ECB_02594ECB_02630ECB_02593
ECOL409438 ECSE_3129ECSE_2994ECSE_2996ECSE_3043ECSE_2995
ECOL405955 APECO1_3660APECO1_3781APECO1_3779APECO1_3746APECO1_3780
ECOL364106 UTI89_C3250UTI89_C3112UTI89_C3115UTI89_C3155UTI89_C3114
ECOL362663 ECP_2859ECP_2723ECP_2726ECP_2766ECP_2725
ECOL331111 ECE24377A_3190ECE24377A_3043ECE24377A_3045ECE24377A_3089ECE24377A_3044
ECOL316407 ECK2861:JW2833:B2865ECK2737:JW2712:B2742ECK2739:JW2714:B2744ECK2779:JW2756:B2785ECK2738:JW2713:B2743
ECOL199310 C3443C3308C3311C3348C3310
ECAR218491 ECA3531ECA3531ECA3570ECA3532
DSHI398580 DSHI_2138DSHI_2136DSHI_3492DSHI_2137
DRED349161 DRED_3173DRED_3173DRED_1760DRED_2261
DNOD246195 DNO_0958DNO_0958DNO_0959DNO_1083
DHAF138119 DSY1605DSY4936DSY1823DSY3765
DARO159087 DARO_2522DARO_2522DARO_2524DARO_0851DARO_2523
CVIO243365 CV_3681CV_3681CV_3679CV_1932CV_3680
CSP78 CAUL_3112CAUL_3112CAUL_3114CAUL_3113
CSAL290398 CSAL_2632CSAL_2632CSAL_2635CSAL_1637CSAL_2634
CPSY167879 CPS_1078CPS_1078CPS_1075CPS_4116CPS_1076
CJAP155077 CJA_2219CJA_2219CJA_2576CJA_2220
CHYD246194 CHY_2625CHY_2625CHY_0957CHY_1112
CBOT536232 CLM_4099CLM_4099CLM_0283CLM_3255
CBOT515621 CLJ_B3936CLJ_B3936CLJ_B0281CLJ_B3672
CBOT441771 CLC_3585CLC_3585CLC_0289CLC_3312
CBOT441770 CLB_3687CLB_3687CLB_0274CLB_3425
CBOT36826 CBO3606CBO3606CBO0233CBO3369
CAULO CC1996CC1996CC1998CC1326CC1997
BVIE269482 BCEP1808_1280BCEP1808_1748BCEP1808_1750BCEP1808_1744BCEP1808_1749
BTRI382640 BT_0846BT_0846BT_0651BT_0845
BTHA271848 BTH_I2752BTH_I2752BTH_I2223BTH_I2229BTH_I2224
BSUI470137 BSUIS_A0926BSUIS_A0926BSUIS_A0924BSUIS_A0464BSUIS_A0925
BSUI204722 BR_0888BR_0888BR_0886BR_0438BR_0887
BSP376 BRADO4039BRADO4039BRADO4042BRADO2158BRADO4040
BSP36773 BCEP18194_A4460BCEP18194_A4460BCEP18194_A5124BCEP18194_A5118BCEP18194_A5123
BPSE320373 BURPS668_1511BURPS668_1511BURPS668_2201BURPS668_2195BURPS668_2200
BPSE320372 BURPS1710B_A1840BURPS1710B_A1840BURPS1710B_A2569BURPS1710B_A2562BURPS1710B_A2568
BPSE272560 BPSL1381BPSL1381BPSL1502BPSL1508BPSL1503
BPET94624 BPET2547BPET2547BPET2549BPET2543BPET2548
BPER257313 BP1721BP1721BP1719BP1725BP1720
BPAR257311 BPP3055BPP3055BPP3057BPP3051BPP3056
BOVI236 GBOORF0915GBOORF0915GBOORF0908GBOORF0467GBOORF0909
BMEL359391 BAB1_0907BAB1_0907BAB1_0905BAB1_0464BAB1_0906
BMEL224914 BMEI1079BMEI1079BMEI1081BMEI1496BMEI1080
BMAL320389 BMA10247_0602BMA10247_0602BMA10247_1119BMA10247_1112BMA10247_1118
BMAL320388 BMASAVP1_A1320BMASAVP1_A1320BMASAVP1_A1847BMASAVP1_A1840BMASAVP1_A1846
BMAL243160 BMA_0803BMA_0803BMA_1357BMA_1350BMA_1356
BJAP224911 BLL4743BLL4743BLL4746BLL2648BLL4744
BCEN331272 BCEN2424_1317BCEN2424_1821BCEN2424_1823BCEN2424_1817BCEN2424_1822
BCEN331271 BCEN_0836BCEN_6258BCEN_6256BCEN_6262BCEN_6257
BCAN483179 BCAN_A0902BCAN_A0902BCAN_A0900BCAN_A0442BCAN_A0901
BBRO257310 BB3018BB3018BB3020BB3014BB3019
BBAC264462 BD2006BD2006BD3828BD2618
BAMB398577 BAMMC406_1228BAMMC406_1228BAMMC406_1734BAMMC406_1728BAMMC406_1733
BAMB339670 BAMB_1202BAMB_4030BAMB_1761BAMB_1755BAMB_1760
BABO262698 BRUAB1_0900BRUAB1_0900BRUAB1_0898BRUAB1_0460BRUAB1_0899
AVAR240292 AVA_3195AVA_3195AVA_2116AVA_3634
ASP76114 EBA779EBA779EBA782EBA771EBA781
ASP62977 ACIAD1229ACIAD1229ACIAD1227ACIAD3069
ASP62928 AZO1089AZO1089AZO1087AZO1100AZO1088
ASP232721 AJS_1162AJS_1162AJS_1160AJS_2413AJS_1161
ASAL382245 ASA_3467ASA_3467ASA_3470ASA_3479ASA_3469
APLE434271 APJL_1978APJL_1978APJL_1974APJL_0327
APLE416269 APL_1930APL_1930APL_1927APL_0312
AMET293826 AMET_4761AMET_4761AMET_2636AMET_4060
AMAR329726 AM1_1508AM1_1508AM1_2650AM1_5265
AHYD196024 AHA_0829AHA_0829AHA_0826AHA_0817AHA_0827
AEHR187272 MLG_1826MLG_1826MLG_1829MLG_1354MLG_1828
ADEH290397 ADEH_0752ADEH_0752ADEH_0753ADEH_1726
ACAU438753 AZC_1731AZC_1731AZC_1219AZC_3107AZC_1728
ABOR393595 ABO_1171ABO_1171ABO_1624ABO_1169
ABAU360910 BAV1979BAV1979BAV1981BAV1976BAV1980
AAVE397945 AAVE_1416AAVE_1416AAVE_1414AAVE_3318AAVE_1415


Organism features enriched in list (features available for 234 out of the 249 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00092712492
Arrangment:Singles 0.0009861132286
Disease:Bubonic_plague 0.004021966
Disease:Dysentery 0.004021966
Disease:Gastroenteritis 0.00109411113
Endospores:No 2.480e-1246211
Endospores:Yes 0.00253551253
GC_Content_Range4:0-40 8.836e-3123213
GC_Content_Range4:40-60 2.326e-11128224
GC_Content_Range4:60-100 7.464e-783145
GC_Content_Range7:0-30 5.337e-7447
GC_Content_Range7:30-40 3.941e-2119166
GC_Content_Range7:50-60 2.988e-1275107
GC_Content_Range7:60-70 1.136e-882134
Genome_Size_Range5:0-2 3.845e-317155
Genome_Size_Range5:4-6 1.982e-18122184
Genome_Size_Range5:6-10 5.620e-73547
Genome_Size_Range9:1-2 2.797e-237128
Genome_Size_Range9:2-3 0.000963434120
Genome_Size_Range9:4-5 2.249e-86396
Genome_Size_Range9:5-6 2.157e-85988
Genome_Size_Range9:6-8 7.194e-83138
Gram_Stain:Gram_Neg 5.599e-29197333
Gram_Stain:Gram_Pos 2.511e-288150
Habitat:Specialized 0.00574511353
Motility:No 3.283e-1818151
Motility:Yes 2.378e-16155267
Optimal_temp.:- 0.0062597116257
Optimal_temp.:25-30 8.252e-61719
Optimal_temp.:28-30 0.001589277
Optimal_temp.:35-37 5.718e-61313
Optimal_temp.:37 0.005932732106
Oxygen_Req:Anaerobic 0.000021523102
Oxygen_Req:Facultative 0.000366999201
Pathogenic_in:Plant 0.00708801115
Shape:Coccus 1.063e-61482
Shape:Rod 6.746e-13180347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 237
Effective number of orgs (counting one per cluster within 468 clusters): 170

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97901
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GOXY290633 ncbi Gluconobacter oxydans 621H1
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CCAV227941 ncbi Chlamydophila caviae GPIC1
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/31
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BSUB ncbi Bacillus subtilis subtilis 1681
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola1
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7484   EG12111   EG11817   EG11247   EG10689   
WPIP955 WD_1077
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TPEN368408 TPEN_1004
TPAL243276 TP_0419
TDEN243275
TACI273075
STRO369723
STOK273063 ST0182
STHE322159 STER_0423
STHE299768 STR0376
STHE264199 STU0376
SSUI391296
SSUI391295
SSOL273057 SSO2599
SSAP342451 SSP0894
SPYO370554 MGAS10750_SPY1428
SPYO370553 MGAS2096_SPY1160
SPYO370552 MGAS10270_SPY1435
SPYO370551 MGAS9429_SPY1313
SPYO319701 M28_SPY1360
SPYO293653 M5005_SPY1319
SPYO286636 M6_SPY1337
SPYO198466 SPYM3_1299
SPYO193567 SPS0562
SPYO186103 SPYM18_1360
SPYO160490 SPY1606
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007 SMU_1779C
SMAR399550 SMAR_0720
SHAE279808 SH1056
SGOR29390
SERY405948 SACE_6672
SEPI176280 SE_1582
SEPI176279 SERP1435
SCO SCO6928
SAVE227882
SAUR93062 SACOL1957
SAUR93061 SAOUHSC_02113
SAUR426430 NWMN_1835
SAUR418127 SAHV_1882
SAUR367830 SAUSA300_1878
SAUR359787 SAURJH1_1985
SAUR359786 SAURJH9_1951
SAUR282459 SAS1819
SAUR282458 SAR1988
SAUR273036 SAB1829C
SAUR196620 MW1838
SAUR158879 SA1713
SAUR158878 SAV1897
SARE391037 SARE_3329
SAGA211110 GBS0448
SAGA208435 SAG_0413
SAGA205921 SAK_0494
SACI330779 SACI_0434
RTYP257363
RSP101510
RSAL288705
RRIC452659 RRIOWA_1304
RRIC392021 A1G_06075
RPRO272947
RMAS416276
RFEL315456 RF_0195
RCON272944 RC1093
RCAN293613 A1E_04700
RBEL391896
RBEL336407
RALB246199
RAKA293614 A1C_05580
PTOR263820 PTO1456
PRUM264731 GFRORF0018
PPEN278197 PEPE_1366
PMAR93060 P9215_14961
PMAR74546 PMT9312_1365
PMAR59920 PMN2A_0837
PMAR167555 NATL1_16901
PMAR167546 P9301ORF_1481
PMAR167542 P9515ORF_1496
PMAR167540 PMM1271
PMAR167539 PRO_1345
PMAR146891 A9601_14701
PHOR70601 PH1886
PFUR186497 PF1922
PAST100379
PACN267747
PABY272844 PAB1206
OTSU357244
OIHE221109 OB0768
NSP35761 NOCA_4541
NSEN222891 NSE_0374
NFAR247156
MVAN350058 MVAN_4871
MTUB419947
MTUB336982
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_0020
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_6820
MSED399549 MSED_2163
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MLEP272631
MLAB410358 MLAB_0275
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBOV410289
MBOV233413
MAVI243243
MART243272
MABS561007
LXYL281090
LWEL386043 LWE1768
LSAK314315 LSA1479
LREU557436 LREU_1438
LPLA220668 LP_1151
LMON265669 LMOF2365_1776
LMON169963 LMO1751
LMES203120 LEUM_1577
LLAC272623
LLAC272622
LJOH257314 LJ_1698
LINN272626 LIN1863
LHEL405566 LHV_0563
LGAS324831 LGAS_1493
LDEL390333 LDB0473
LDEL321956 LBUL_0421
LCAS321967 LSEI_1061
LBRE387344 LVIS_1627
LACI272621 LBA0539
KRAD266940
IHOS453591 IGNI_0877
HSP64091 VNG1241G
HSAL478009 OE2782F
GTHE420246 GTNG_0298
GOXY290633 GOX0093
GKAU235909 GK0342
FTUL458234 FTA_1615
FTUL418136 FTW_1538
FTUL401614 FTN_0616
FTUL393115 FTF0705
FTUL393011 FTH_1481
FTUL351581 FTL_1531
FSUC59374 FSU0779
FSP1855 FRANEAN1_5984
FSP106370 FRANCCI3_1819
FRANT RUMA
FPHI484022 FPHI_0226
FNUC190304
FMAG334413 FMG_1424
FALN326424 FRAAL0277
ERUM302409 ERGA_CDS_03050
ERUM254945 ERWE_CDS_03100
EFAE226185 EF_0728
ECHA205920 ECH_0791
ECAN269484 ECAJ_0285
DSP255470 CBDBA776
DSP216389 DEHABAV1_0723
DETH243164 DET_0797
CTRA471473 CTLON_0465
CTRA471472 CTL0470
CSUL444179
CPNE182082 CPB0269
CPNE138677 CPJ0262
CPNE115713 CPN0262
CPNE115711 CP_0499
CPHY357809 CPHY_0159
CPEL335992
CNOV386415 NT01CX_1299
CMUR243161 TC_0491
CMIC443906
CMIC31964
CMAQ397948 CMAQ_1536
CJEI306537 JK1559
CGLU196627 CG0980
CFEL264202 CF0488
CEFF196164 CE0934
CDIP257309
CDIF272563 CD3393
CCAV227941 CCA_00519
CACE272562 CAC0523
CABO218497 CAB506
BWEI315730 BCERKBAB4_0313
BTUR314724
BTHU412694 BALH_0324
BTHU281309 BT9727_0301
BSUB BSU06730
BLON206672
BHER314723
BHAL272558 BH0687
BGAR290434
BCLA66692 ABC1101
BCIC186490 BCI_0175
BCER572264 BCA_0407
BCER405917 BCE_0363
BCER315749 BCER98_0311
BCER288681 BCE33L0305
BCER226900 BC_0364
BBUR224326
BAPH372461
BAPH198804
BANT592021 BAA_0390
BANT568206 BAMEG_0393
BANT261594 GBAA0333
BANT260799 BAS0318
BAMY326423 RBAM_007130
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667
APHA212042 APH_0524
APER272557 APE1011
ANAE240017
ALAI441768 ACL_0701
ACEL351607 ACEL_0376
ABUT367737 ABU_2263
ABAC204669 ACID345_2473
AAUR290340


Organism features enriched in list (features available for 220 out of the 237 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00039744992
Arrangment:Clusters 4.282e-81717
Arrangment:Singles 0.000623790286
Disease:Pharyngitis 0.000379488
Disease:Pneumonia 0.0077592912
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00001881111
Disease:Tularemia 0.007436455
Disease:Wide_range_of_infections 0.00001881111
Disease:bronchitis_and_pneumonitis 0.000379488
Endospores:No 2.233e-10115211
Endospores:Yes 0.00747012853
GC_Content_Range4:0-40 2.045e-25139213
GC_Content_Range4:40-60 3.129e-1246224
GC_Content_Range4:60-100 0.000013234145
GC_Content_Range7:0-30 0.00003043147
GC_Content_Range7:30-40 1.380e-17108166
GC_Content_Range7:50-60 2.959e-1211107
GC_Content_Range7:60-70 4.621e-825134
GC_Content_Range7:70-100 0.0030736911
Genome_Size_Range5:0-2 4.373e-23110155
Genome_Size_Range5:4-6 3.221e-1233184
Genome_Size_Range5:6-10 0.0024556947
Genome_Size_Range9:0-1 2.676e-72327
Genome_Size_Range9:1-2 2.552e-1587128
Genome_Size_Range9:3-4 0.00012861577
Genome_Size_Range9:4-5 4.870e-81496
Genome_Size_Range9:5-6 0.00023291988
Genome_Size_Range9:6-8 0.0004552538
Gram_Stain:Gram_Neg 6.031e-2764333
Gram_Stain:Gram_Pos 1.479e-37122150
Habitat:Aquatic 0.00024532091
Habitat:Host-associated 1.327e-6104206
Motility:No 5.061e-23108151
Motility:Yes 3.844e-2147267
Optimal_temp.:25-30 0.0012430119
Optimal_temp.:30-37 4.943e-71718
Oxygen_Req:Anaerobic 0.001580826102
Oxygen_Req:Facultative 0.009697687201
Pathogenic_in:Human 0.0000483102213
Pathogenic_in:No 0.000686668226
Pathogenic_in:Swine 0.007436455
Salinity:Non-halophilic 0.002739652106
Shape:Coccus 1.740e-126082
Shape:Rod 5.481e-998347
Shape:Sphere 0.00003021619



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-4041 (γ-glutamyl cycle)2792060.6227
GLYCOCAT-PWY (glycogen degradation I)2461890.6079
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951610.5870
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392230.5758
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002060.5646
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491330.5642
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482240.5604
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181680.5556
PWY-1269 (CMP-KDO biosynthesis I)3252130.5452
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251690.5394
PWY-5918 (heme biosynthesis I)2721900.5371
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861940.5240
PWY-5913 (TCA cycle variation IV)3011990.5161
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292100.5153
TYRFUMCAT-PWY (tyrosine degradation I)1841450.5133
AST-PWY (arginine degradation II (AST pathway))1201090.5072
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911920.4972
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551760.4937
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491730.4916
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491730.4916
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982310.4907
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961930.4901
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222380.4860
PWY-5386 (methylglyoxal degradation I)3051960.4857
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761370.4852
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901890.4802
PWY-5148 (acyl-CoA hydrolysis)2271600.4717
PWY-5028 (histidine degradation II)1301100.4681
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831380.4666
GLUCONSUPER-PWY (D-gluconate degradation)2291600.4654
PWY0-862 (cis-dodecenoyl biosynthesis)3432060.4540
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911400.4524
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911400.4524
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171940.4412
P601-PWY (D-camphor degradation)95860.4378
PWY-3162 (tryptophan degradation V (side chain pathway))94850.4342
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652100.4266
PWY-46 (putrescine biosynthesis III)1381090.4249
P344-PWY (acrylonitrile degradation)2101450.4233
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96850.4232
REDCITCYC (TCA cycle variation II)1741270.4197
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891790.4172
PWY-5938 ((R)-acetoin biosynthesis I)3762120.4135
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742110.4116
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301520.4079
GALACTITOLCAT-PWY (galactitol degradation)73690.4057
PWY-5340 (sulfate activation for sulfonation)3852140.4055
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111860.4044



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12111   EG11817   EG11247   EG10689   
G74840.9999670.9998430.9986250.999856
EG121110.999860.9989180.999878
EG118170.9986860.999866
EG112470.998863
EG10689



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PAIRWISE BLAST SCORES:

  G7484   EG12111   EG11817   EG11247   EG10689   
G74840.0f02.3e-55---
EG121111.0e-560.0f0---
EG11817--0.0f0--
EG11247---0.0f0-
EG10689----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10689 EG11817 EG12111 (centered at EG10689)
G7484 (centered at G7484)
EG11247 (centered at EG11247)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7484   EG12111   EG11817   EG11247   EG10689   
299/623282/623397/623351/623318/623
AAEO224324:0:Tyes281-4030-
AAVE397945:0:Tyes22018731
ABAC204669:0:Tyes----0
ABAU360910:0:Tyes33504
ABOR393595:0:Tyes22-4680
ABUT367737:0:Tyes--0--
ACAU438753:0:Tyes51951901909516
ACEL351607:0:Tyes-0---
ACRY349163:8:Tyes---01248
ADEH290397:0:Tyes001-986
AEHR187272:0:Tyes4674674700469
AFER243159:0:Tyes--225202251
AFUL224325:0:Tyes--892-0
AHYD196024:0:Tyes12129010
ALAI441768:0:Tyes--0--
AMAR234826:0:Tyes0-242--
AMAR329726:9:Tyes0011323726-
AMET293826:0:Tyes2129212901362-
AORE350688:0:Tyes22592259-0-
APER272557:0:Tyes----0
APHA212042:0:Tyes--0--
APLE416269:0:Tyes1661166116580-
APLE434271:0:Tno1676167616720-
ASAL382245:5:Tyes003122
ASP232721:2:Tyes22012051
ASP62928:0:Tyes220131
ASP62977:0:Tyes1101701-
ASP76114:2:Tyes77908
AVAR240292:3:Tyes1079107901519-
BABO262698:1:Tno4174174150416
BAMB339670:2:Tno-0---
BAMB339670:3:Tno0-571565570
BAMB398577:3:Tno00508502507
BAMY326423:0:Tyes---0-
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RETL347834:0:Tyes----0
RETL347834:5:Tyes220--
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RMET266264:2:Tyes44605
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RPOM246200:1:Tyes2595-259702596
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RRUB269796:1:Tyes002-1
RSOL267608:1:Tyes22051
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SCO:2:Fyes----0
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ZMOB264203:0:Tyes001--



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