CANDIDATE ID: 602

CANDIDATE ID: 602

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9922880e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7744 (hslO) (b3401)
   Products of gene:
     - G7744-MONOMER (molecular chaperone Hsp33)

- G7743 (hslR) (b3400)
   Products of gene:
     - G7743-MONOMER (heat shock protein Hsp15 involved in ribosome recycling)

- G7742 (yrfG) (b3399)
   Products of gene:
     - G7742-MONOMER (purine nucleotidase)
       Reactions:
        inosine-5'-phosphate + H2O  ->  inosine + phosphate
         In pathways
         P165-PWY (P165-PWY)
         PWY-5043 (PWY-5043)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        GMP + H2O  ->  guanosine + phosphate
         In pathways
         P165-PWY (P165-PWY)
         PWY-5043 (PWY-5043)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)

- G7740 (nudE) (b3397)
   Products of gene:
     - G7740-MONOMER (NudE)
     - CPLX0-1221 (ADP-sugar pyrophosphorylase)
       Reactions:
        an ADP-sugar + H2O  ->  AMP + an alpha-D-aldose-1-phosphate + 2 H+

- EG10688 (pck) (b3403)
   Products of gene:
     - PEPCARBOXYKIN-MONOMER (phosphoenolpyruvate carboxykinase (ATP))
       Reactions:
        oxaloacetate + ATP  ->  CO2 + phosphoenolpyruvate + ADP + H+
         In pathways
         GLUCONEO-PWY (gluconeogenesis I)
         PWY-561 (PWY-561)



Back to top


ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 137
Effective number of orgs (counting one per cluster within 468 clusters): 80

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79015
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RETL347834 ncbi Rhizobium etli CFN 424
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23965
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DHAF138119 ncbi Desulfitobacterium hafniense Y514
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CJAP155077 Cellvibrio japonicus4
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BSUB ncbi Bacillus subtilis subtilis 1684
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ABOR393595 ncbi Alcanivorax borkumensis SK25


Names of the homologs of the genes in the group in each of these orgs
  G7744   G7743   G7742   G7740   EG10688   
YPSE349747 YPSIP31758_3977YPSIP31758_3976YPSIP31758_3975YPSIP31758_3973YPSIP31758_3978
YPSE273123 YPTB3761YPTB3760YPTB3759YPTB3757YPTB3762
YPES386656 YPDSF_0066YPDSF_0067YPDSF_0068YPDSF_0070YPDSF_0065
YPES377628 YPN_3926YPN_3925YPN_3924YPN_3922YPN_3927
YPES360102 YPA_3330YPA_3329YPA_3328YPA_3326YPA_3331
YPES349746 YPANGOLA_A3738YPANGOLA_A3737YPANGOLA_A3736YPANGOLA_A3734YPANGOLA_A3739
YPES214092 YPO0139YPO0140YPO0141YPO0144YPO0138
YPES187410 Y3919Y3920Y3921Y3923Y3918
YENT393305 YE3985YE3984YE3983YE3980YE3986
VVUL216895 VV1_0880VV1_0879VV1_0865VV1_0881
VVUL196600 VV0208VV0209VV0226VV0207
VPAR223926 VP0130VP0131VP0145VP0129
VFIS312309 VF2477VF2476VF2463VF2478
VCHO345073 VC0395_A2309VC0395_A2308VC0395_A2294VC0395_A2310
VCHO VC2736VC2735VC2721VC2738
TTUR377629 TERTU_0239TERTU_0240TERTU_0241TERTU_0242TERTU_1174
TDEN292415 TBD_0750TBD_0509TBD_0839TBD_0232
TCRU317025 TCR_1649TCR_0016TCR_1757TCR_1756
STYP99287 STM3498STM3497STM3496STM3494STM3500
SSP94122 SHEWANA3_0148SHEWANA3_0149SHEWANA3_0162SHEWANA3_0169SHEWANA3_0147
SSON300269 SSO_3532SSO_3531SSO_3530SSO_3528SSO_3534
SSED425104 SSED_4361SSED_4360SSED_4347SSED_4346SSED_4362
SPRO399741 SPRO_4616SPRO_4615SPRO_4614SPRO_4612SPRO_2098
SPEA398579 SPEA_0141SPEA_0142SPEA_0155SPEA_0156SPEA_0140
SONE211586 SO_0163SO_0164SO_0177SO_0190SO_0162
SLOI323850 SHEW_3622SHEW_3621SHEW_0128SHEW_0129SHEW_3623
SHIGELLA YRFIYRFHYRFGYRFEPCKA
SHAL458817 SHAL_4177SHAL_4176SHAL_4163SHAL_4162SHAL_4178
SGLO343509 SG2316SG2315SG2314SG2312SG2317
SFLE373384 SFV_3406SFV_3405SFV_3404SFV_3402SFV_3408
SFLE198214 AAN44880.1AAN44879.1AAN44878.1AAN44876.1AAN44883.1
SENT454169 SEHA_C3804SEHA_C3803SEHA_C3802SEHA_C3800SEHA_C3807
SENT321314 SCH_3430SCH_3429SCH_3428SCH_3426SCH_3432
SENT295319 SPA3363SPA3362SPA3361SPA3359SPA3365
SENT220341 STY4298STY4299STY4300STY4302STY4296
SENT209261 T4008T4009T4010T4012T4006
SDYS300267 SDY_3677SDY_3678SDY_3679SDY_3681SDY_3673
SDEN318161 SDEN_0118SDEN_0119SDEN_0222SDEN_0224SDEN_0117
SDEG203122 SDE_3626SDE_3625SDE_3624SDE_3623SDE_0992
SBOY300268 SBO_3388SBO_3387SBO_3386SBO_3384SBO_3390
SBAL402882 SHEW185_0146SHEW185_0147SHEW185_0160SHEW185_0167SHEW185_0145
SBAL399599 SBAL195_0150SBAL195_0151SBAL195_0164SBAL195_0171SBAL195_0149
SAUR93062 SACOL0556SACOL0550SACOL1542SACOL1838
SAUR93061 SAOUHSC_00487SAOUHSC_00481SAOUHSC_01593SAOUHSC_01910
SAUR418127 SAHV_0509SAHV_0503SAHV_1487SAHV_1776
SAUR367830 SAUSA300_0490SAUSA300_0484SAUSA300_1449SAUSA300_1731
SAUR359787 SAURJH1_0547SAURJH1_0541SAURJH1_1587SAURJH1_1878
SAUR359786 SAURJH9_0534SAURJH9_0528SAURJH9_1556SAURJH9_1842
SAUR282459 SAS0469SAS0463SAS1439SAS1712
SAUR282458 SAR0513SAR0507SAR1575SAR1871
SAUR273036 SAB0461SAB0455SAB1360CSAB1646
SAUR196620 MW0467MW0461MW1453MW1729
SAUR158879 SA0470SA0464SA1330SA1609
SAUR158878 SAV0512SAV0506SAV1499SAV1791
RLEG216596 RL0551RL4617RL0413RL0037
RETL347834 RHE_CH00518RHE_CH04023RHE_CH00252RHE_CH00037
PSYR223283 PSPTO_0238PSPTO_0237PSPTO_5403PSPTO_5402PSPTO_0239
PSYR205918 PSYR_0169PSYR_0170PSYR_4942PSYR_4941PSYR_0168
PSTU379731 PST_0292PST_0290PST_0317PST_0318PST_0293
PPUT76869 PPUTGB1_0277PPUTGB1_0275PPUTGB1_0284PPUTGB1_0285PPUTGB1_0278
PPUT351746 PPUT_0267PPUT_0265PPUT_0274PPUT_0275PPUT_0268
PPUT160488 PP_0252PP_0250PP_0259PP_0260
PPRO298386 PBPRA3484PBPRA3483PBPRA3470PBPRA3485
PMUL272843 PM1547PM1546PM1545PM1544PM1542
PMEN399739 PMEN_0367PMEN_0365PMEN_0392PMEN_0393PMEN_0368
PLUM243265 PLU0099PLU0098PLU0096PLU0100
PING357804 PING_0094PING_0095PING_0151PING_0119PING_0093
PHAL326442 PSHAA0229PSHAA0230PSHAA0126PSHAA0127PSHAA0228
PFLU220664 PFL_0283PFL_0281PFL_0296PFL_0297PFL_0284
PFLU216595 PFLU0266PFLU0264PFLU0282PFLU0283PFLU0267
PFLU205922 PFL_0267PFL_0265PFL_0283PFL_0284PFL_0268
PENT384676 PSEEN0233PSEEN0231PSEEN0244PSEEN0245PSEEN0234
PATL342610 PATL_0227PATL_0228PATL_0139PATL_0138PATL_2282
PAER208964 PA5193PA5195PA5177PA5176PA5192
PAER208963 PA14_68610PA14_68630PA14_68390PA14_68380PA14_68580
MSUC221988 MS2262MS2264MS0019MS2293
MCAP243233 MCA_2980MCA_1817MCA_2982MCA_0333
MAQU351348 MAQU_3753MAQU_3752MAQU_3751MAQU_3754
KPNE272620 GKPORF_B3113GKPORF_B3112GKPORF_B3111GKPORF_B3109GKPORF_B3114
ILOI283942 IL2029IL2028IL0323IL0273
HMOD498761 HM1_2146HM1_0715HM1_0309HM1_2773
HDUC233412 HD_0843HD_0842HD_0841HD_1331
HCHE349521 HCH_00562HCH_00563HCH_00564HCH_04775HCH_00561
GURA351605 GURA_0022GURA_1891GURA_0176GURA_0871
GTHE420246 GTNG_0064GTNG_0052GTNG_2251GTNG_2751
GMET269799 GMET_0041GMET_1630GMET_0048GMET_3169
GKAU235909 GK0064GK0052GK2320GK2850
ESP42895 ENT638_3814ENT638_3813ENT638_3812ENT638_3810ENT638_3816
EFER585054 EFER_3367EFER_3366EFER_3365EFER_3363EFER_3369
ECOO157 YRFIYRFHYRFGYRFEPCKA
ECOL83334 ECS4243ECS4242ECS4241ECS4239ECS4245
ECOL585397 ECED1_4060ECED1_4059ECED1_4058ECED1_4056ECED1_4063
ECOL585057 ECIAI39_3879ECIAI39_3878ECIAI39_3877ECIAI39_3875ECIAI39_3881
ECOL585056 ECUMN_3859ECUMN_3858ECUMN_3857ECUMN_3855ECUMN_3862
ECOL585055 EC55989_3806EC55989_3805EC55989_3804EC55989_3802EC55989_3809
ECOL585035 ECS88_3787ECS88_3786ECS88_3785ECS88_3783ECS88_3790
ECOL585034 ECIAI1_3540ECIAI1_3539ECIAI1_3538ECIAI1_3536ECIAI1_3544
ECOL481805 ECOLC_0312ECOLC_0313ECOLC_0314ECOLC_0316ECOLC_0310
ECOL469008 ECBD_0345ECBD_0346ECBD_0347ECBD_0350ECBD_0342
ECOL439855 ECSMS35_3679ECSMS35_3678ECSMS35_3677ECSMS35_3674ECSMS35_3682
ECOL413997 ECB_03253ECB_03252ECB_03251ECB_03249ECB_03255
ECOL409438 ECSE_3663ECSE_3662ECSE_3661ECSE_3658ECSE_3666
ECOL405955 APECO1_3063APECO1_3064APECO1_3065APECO1_3067APECO1_3061
ECOL364106 UTI89_C3899UTI89_C3898UTI89_C3897UTI89_C3895UTI89_C3903
ECOL362663 ECP_3487ECP_3486ECP_3485ECP_3483ECP_3489
ECOL331111 ECE24377A_3873ECE24377A_3872ECE24377A_3871ECE24377A_3868ECE24377A_3877
ECOL316407 ECK3388:JW5692:B3401ECK3387:JW3363:B3400ECK3386:JW5865:B3399ECK3384:JW3360:B3397ECK3390:JW3366:B3403
ECOL199310 C4172C4171C4170C4167C4176
ECAR218491 ECA4105ECA4104ECA4103ECA4100ECA4106
DHAF138119 DSY2681DSY0194DSY2325DSY4203
CSAL290398 CSAL_2658CSAL_2659CSAL_2660CSAL_2661CSAL_2657
CPSY167879 CPS_4594CPS_4593CPS_0423CPS_0424CPS_4595
CKLU431943 CKL_3210CKL_0158CKL_1238CKL_2699
CJAP155077 CJA_0307CJA_0309CJA_0310CJA_0311
BWEI315730 BCERKBAB4_0062BCERKBAB4_0052BCERKBAB4_3925BCERKBAB4_4595
BTHU412694 BALH_0065BALH_0054BALH_3712BALH_4341
BTHU281309 BT9727_0062BT9727_0052BT9727_3837BT9727_4501
BSUB BSU00710BSU00590BSU23610BSU30560
BPUM315750 BPUM_0055BPUM_0043BPUM_2090BPUM_2687
BLIC279010 BL00854BL00511BL05253BL00839
BHAL272558 BH0087BH0073BH1524BH3302
BCLA66692 ABC0108ABC0090ABC1778ABC2879
BCER572264 BCA_0079BCA_0067BCA_4206BCA_4894
BCER405917 BCE_0065BCE_0055BCE_4163BCE_4916
BCER288681 BCE33L0062BCE33L0052BCE33L3851BCE33L4518
BCER226900 BC_0074BC_0062BC_4094BC_4762
BANT592021 BAA_0079BAA_0067BAA_4337BAA_5034
BANT568206 BAMEG_0079BAMEG_0067BAMEG_4355BAMEG_5056
BANT261594 GBAA0066GBAA0056GBAA4316GBAA5019
BANT260799 BAS0066BAS0056BAS4004BAS4661
BAMY326423 RBAM_000820RBAM_000680RBAM_021740RBAM_027580
ASAL382245 ASA_3772ASA_3773ASA_3788ASA_3789ASA_3771
APLE434271 APJL_1328APJL_1327APJL_1326APJL_0805
APLE416269 APL_1315APL_1314APL_1313APL_0800
AHYD196024 AHA_0566AHA_0567AHA_0582AHA_0583AHA_0565
AEHR187272 MLG_0165MLG_1173MLG_0369MLG_0370MLG_2591
ABOR393595 ABO_0276ABO_0277ABO_0278ABO_0279ABO_0275


Organism features enriched in list (features available for 131 out of the 137 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00015761117
Arrangment:Pairs 1.147e-645112
Disease:Anthrax 0.002459344
Disease:Bubonic_plague 0.000117666
Disease:Dysentery 0.000117666
Disease:Gastroenteritis 0.00003501013
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0000400911
Endospores:Yes 0.00367992053
GC_Content_Range4:0-40 6.242e-725213
GC_Content_Range4:40-60 4.849e-1589224
GC_Content_Range4:60-100 0.000093617145
GC_Content_Range7:30-40 0.002022825166
GC_Content_Range7:40-50 0.000034443117
GC_Content_Range7:50-60 6.658e-846107
GC_Content_Range7:60-70 0.000588717134
Genome_Size_Range5:0-2 2.783e-191155
Genome_Size_Range5:2-4 0.000197428197
Genome_Size_Range5:4-6 5.508e-2389184
Genome_Size_Range9:1-2 2.802e-151128
Genome_Size_Range9:2-3 0.008247618120
Genome_Size_Range9:4-5 5.808e-74196
Genome_Size_Range9:5-6 4.519e-134888
Gram_Stain:Gram_Neg 1.122e-698333
Habitat:Multiple 0.008685250178
Habitat:Specialized 0.0064826553
Motility:No 0.000031417151
Motility:Yes 1.017e-1092267
Optimal_temp.:30-37 0.00161431018
Oxygen_Req:Aerobic 0.002151629185
Oxygen_Req:Anaerobic 4.103e-67102
Oxygen_Req:Facultative 2.969e-1989201
Pathogenic_in:Human 0.001271262213
Pathogenic_in:No 0.000412035226
Shape:Rod 2.155e-12111347
Shape:Spiral 0.0013861134
Temp._range:Mesophilic 0.0020455117473
Temp._range:Psychrophilic 0.004741669



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 220
Effective number of orgs (counting one per cluster within 468 clusters): 190

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P21
SRUB309807 ncbi Salinibacter ruber DSM 138551
SMAR399550 ncbi Staphylothermus marinus F11
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)1
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MXAN246197 ncbi Myxococcus xanthus DK 16221
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRED349161 ncbi Desulfotomaculum reducens MI-11
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BOVI236 Brucella ovis1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7744   G7743   G7742   G7740   EG10688   
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TROS309801 TRD_1187
TPAL243276
TLET416591 TLET_1992
TKOD69014 TK0477
TDEN326298 TMDEN_1696
TACI273075
SWOL335541 SWOL_0084
STRO369723
STOK273063 ST2154
SSP387093 SUN_1431
SSOL273057 SSO2167
SRUB309807 SRU_2373
SMAR399550 SMAR_1181
SFUM335543 SFUM_0227
SELO269084 SYC1828_D
SCO SCO1991
SARE391037
SACI330779 SACI_0013
RTYP257363
RSP357808 ROSERS_2429
RSAL288705 RSAL33209_1483
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAS383372 RCAS_3049
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSP117 RB6302
PMOB403833 PMOB_1829
PMAR74547 PMT1885
PLUT319225
PISL384616
PHOR70601
PFUR186497
PAST100379
PAER178306
PACN267747 PPA0202
PABY272844
OTSU357244
NSP387092 NIS_0043
NSP35761
NSEN222891
NPHA348780
NMUL323848 NMUL_A2233
NEUT335283 NEUT_2524
NEUR228410 NE2565
MXAN246197 MXAN_1073
MVAN350058 MVAN_2951
MTUB419947
MTUB336982
MTHE349307 MTHE_0628
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918 MKMS_2708
MSP164757 MJLS_2693
MSP164756 MMCS_2663
MSME246196 MSMEG_3455
MSED399549 MSED_0724
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_2211
MMAR267377
MLEP272631
MLAB410358 MLAB_0185
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2834
MGIL350054 MFLV_3238
MGEN243273
MFLO265311
MCAP340047 MCAP_0020
MBUR259564 MBUR_0033
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX15550
LJOH257314 LJ_0285
LINT363253
LINT267671 LIC_10216
LINT189518 LA0251
LHEL405566 LHV_0297
LGAS324831 LGAS_0278
LBRE387344 LVIS_0524
LBOR355277 LBJ_2789
LBOR355276 LBL_0282
LACI272621 LBA0279
KRAD266940 KRAD_0142
IHOS453591
HWAL362976 HQ3163A
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_0603
HMAR272569 RRNAC2153
HHEP235279
HBUT415426 HBUT_0169
HAUR316274 HAUR_4076
HACI382638
GBET391165 GBCGDNIH1_2269
FSUC59374
FSP1855 FRANEAN1_6407
FSP106370 FRANCCI3_1589
FALN326424 FRAAL4744
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DVUL882
DSP255470 CBDBA416
DSP216389 DEHABAV1_0433
DRED349161 DRED_1343
DOLE96561 DOLE_1905
DNOD246195 DNO_0912
DETH243164 DET_0456
DDES207559
CVES412965 COSY_0105
CTRA471473
CTRA471472
CTET212717 CTC_02291
CTEP194439 CT_1365
CSUL444179
CRUT413404 RMAG_0101
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442 MBOO_0268
CMAQ397948
CKOR374847 KCR_0304
CJEJ407148 C8J_0869
CJEJ360109 JJD26997_0882
CJEJ354242 CJJ81176_0939
CJEJ195099 CJE_1010
CJEJ192222 CJ0932C
CJEI306537 JK0872
CHUT269798
CHOM360107 CHAB381_1486
CGLU196627 CG2330
CFET360106 CFF8240_1294
CFEL264202
CEFF196164 CE2022
CDIF272563 CD1220
CCUR360105 CCV52592_0965
CCON360104 CCC13826_1509
CCHL340177
CCAV227941
CBOT508765 CLL_A2482
CBLO291272
CBLO203907
CBEI290402 CBEI_1800
CACE272562 CAC2370
CABO218497
BXEN266265
BTUR314724
BTRI382640 BT_0118
BSP107806
BQUI283165 BQ00990
BOVI236 GBOORF1773
BLON206672 BL0987
BHER314723
BHEN283166 BH01080
BGAR290434
BBUR224326
BBAC360095 BARBAKC583_1292
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
APER272557
AMAR234826
ALAI441768 ACL_1379
AFUL224325
AFER243159 AFE_1673
ADEH290397 ADEH_0421
ACEL351607
ABUT367737 ABU_1227
AAUR290340 AAUR_3787
AAEO224324 AQ_2009


Organism features enriched in list (features available for 210 out of the 220 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00003981792
Arrangment:Pairs 1.365e-816112
Arrangment:Singles 0.0024466118286
Disease:None 0.00404283058
Disease:Pharyngitis 0.000259988
Disease:bronchitis_and_pneumonitis 0.000259988
Endospores:No 6.102e-9108211
Endospores:Yes 0.00574201153
GC_Content_Range4:0-40 0.000027299213
GC_Content_Range4:40-60 0.005600168224
GC_Content_Range4:60-100 0.009837342145
GC_Content_Range7:0-30 3.334e-93647
GC_Content_Range7:50-60 0.000809725107
GC_Content_Range7:60-70 0.005530237134
Genome_Size_Range5:0-2 1.268e-25110155
Genome_Size_Range5:4-6 8.330e-1231184
Genome_Size_Range5:6-10 0.0018215847
Genome_Size_Range9:0-1 3.419e-132727
Genome_Size_Range9:1-2 3.385e-1483128
Genome_Size_Range9:3-4 0.00435221877
Genome_Size_Range9:4-5 0.00001181796
Genome_Size_Range9:5-6 4.855e-61488
Genome_Size_Range9:6-8 0.0009199538
Gram_Stain:Gram_Neg 0.0009032103333
Habitat:Host-associated 0.000068395206
Habitat:Multiple 7.552e-739178
Habitat:Specialized 0.00168522953
Habitat:Terrestrial 0.0082120531
Motility:Yes 0.003392882267
Optimal_temp.:37 0.000424653106
Oxygen_Req:Anaerobic 8.907e-656102
Oxygen_Req:Facultative 1.763e-1235201
Oxygen_Req:Microaerophilic 0.00552141218
Pathogenic_in:Human 0.007850165213
Pathogenic_in:No 0.005948694226
Salinity:Extreme_halophilic 0.009437367
Shape:Coccus 0.00062781782
Shape:Irregular_coccus 1.882e-81717
Shape:Pleomorphic 0.000259988
Shape:Rod 4.828e-1090347
Shape:Sphere 0.00001511619
Shape:Spiral 1.104e-72734
Temp._range:Hyperthermophilic 0.00015351723
Temp._range:Mesophilic 0.0022828158473



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121770.4937
AST-PWY (arginine degradation II (AST pathway))120750.4777
MANNIDEG-PWY (mannitol degradation I)99640.4477
GLUTDEG-PWY (glutamate degradation II)194960.4464
PWY-6196 (serine racemization)102650.4459
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50420.4423
GALACTITOLCAT-PWY (galactitol degradation)73510.4211
GLUTAMINDEG-PWY (glutamine degradation I)191920.4202
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218990.4149
IDNCAT-PWY (L-idonate degradation)2461060.4115
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391040.4100
PWY-6406 (salicylate biosynthesis I)188890.4024
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195910.4021
PWY0-1314 (fructose degradation)224990.4017
PWY-6374 (vibriobactin biosynthesis)77510.4012



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7743   G7742   G7740   EG10688   
G77440.9996030.999270.9990240.999417
G77430.9992820.9989460.999301
G77420.9994760.999042
G77400.998927
EG10688



Back to top


PAIRWISE BLAST SCORES:

  G7744   G7743   G7742   G7740   EG10688   
G77440.0f0----
G7743-0.0f0---
G7742--0.0f0--
G7740---0.0f0-
EG10688----0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7742 G7743 G7744 (centered at G7743)
G7740 (centered at G7740)
EG10688 (centered at EG10688)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7744   G7743   G7742   G7740   EG10688   
381/623330/623104/623330/623243/623
AAEO224324:0:Tyes0----
AAUR290340:2:Tyes-0---
AAVE397945:0:Tyes01084---
ABAC204669:0:Tyes-1981-0-
ABAU360910:0:Tyes0716-1269-
ABOR393595:0:Tyes12340
ABUT367737:0:Tyes----0
ACAU438753:0:Tyes38400--3877
ACRY349163:8:Tyes02748--1538
ADEH290397:0:Tyes0----
AEHR187272:0:Tyes010022042052411
AFER243159:0:Tyes0----
AHYD196024:0:Tyes1217180
ALAI441768:0:Tyes0----
AMAR329726:9:Tyes2978--0-
AMET293826:0:Tyes0--890-
ANAE240017:0:Tyes-0894--
AORE350688:0:Tyes1145--7120
APLE416269:0:Tyes519518-5170
APLE434271:0:Tno534533-5320
ASAL382245:5:Tyes1217180
ASP1667:3:Tyes-10640--
ASP232721:2:Tyes0612---
ASP62928:0:Tyes12660-1013-
ASP62977:0:Tyes0932---
ASP76114:2:Tyes1160--0-
AVAR240292:3:Tyes682--0-
BABO262698:1:Tno01371---
BAMB339670:3:Tno15380-1678-
BAMB398577:3:Tno13680-1511-
BAMY326423:0:Tyes140-21012685
BANT260799:0:Tno120-39944648
BANT261594:2:Tno100-39154577
BANT568206:2:Tyes100-41424832
BANT592021:2:Tno100-41314818
BBAC264462:0:Tyes0--1804-
BBAC360095:0:Tyes0----
BBRO257310:0:Tyes11930-785-
BCAN483179:1:Tno01444--1763
BCEN331271:0:Tno0----
BCEN331271:2:Tno-0-1381-
BCEN331272:3:Tyes13550-1485-
BCER226900:1:Tyes120-39524609
BCER288681:0:Tno120-38534518
BCER315749:1:Tyes100--3222
BCER405917:1:Tyes100-38884614
BCER572264:1:Tno100-39704649
BCIC186490:0:Tyes---10
BCLA66692:0:Tyes190-17422854
BFRA272559:1:Tyes-0--3045
BFRA295405:0:Tno-0--3310
BHAL272558:0:Tyes150-15263318
BHEN283166:0:Tyes0----
BJAP224911:0:Fyes9500--8036
BLIC279010:0:Tyes140-23703036
BLON206672:0:Tyes---0-
BMAL243160:1:Tno0578-110-
BMAL320388:1:Tno16550-637-
BMAL320389:1:Tyes10101740-0-
BMEL224914:1:Tno13730--1796
BMEL359391:1:Tno01326---
BOVI236:1:Tyes-0---
BPAR257311:0:Tno17010-347-
BPER257313:0:Tyes1064--0-
BPET94624:0:Tyes01734-1388-
BPSE272560:1:Tyes10451618-0-
BPSE320372:1:Tno13051949-0-
BPSE320373:1:Tno12211893-0-
BPUM315750:0:Tyes140-20742662
BQUI283165:0:Tyes0----
BSP36773:2:Tyes16080-1765-
BSP376:0:Tyes5738---0
BSUB:0:Tyes140-24673181
BSUI204722:1:Tyes01419--1725
BSUI470137:0:Tno-0---
BSUI470137:1:Tno0----
BTHA271848:1:Tno799222-0-
BTHE226186:0:Tyes-1819--0
BTHU281309:1:Tno100-37464403
BTHU412694:1:Tno120-35394141
BTRI382640:1:Tyes0----
BVIE269482:7:Tyes14650-1598-
BWEI315730:4:Tyes120-38784539
CACE272562:1:Tyes0----
CAULO:0:Tyes16100---
CBEI290402:0:Tyes0----
CBOT36826:1:Tno1278--0-
CBOT441770:0:Tyes1341--0-
CBOT441771:0:Tno1203--0-
CBOT441772:1:Tno1295--0-
CBOT498213:1:Tno1361--0-
CBOT508765:1:Tyes0----
CBOT515621:2:Tyes1343--0-
CBOT536232:0:Tno1477--0-
CBUR227377:1:Tyes---01436
CBUR360115:1:Tno---01428
CBUR434922:2:Tno---0695
CCON360104:2:Tyes----0
CCUR360105:0:Tyes----0
CDES477974:0:Tyes---0245
CDIF272563:1:Tyes---0-
CDIP257309:0:Tyes-386-0-
CEFF196164:0:Fyes-0---
CFET360106:0:Tyes----0
CGLU196627:0:Tyes-0---
CHOM360107:1:Tyes----0
CHYD246194:0:Tyes64--0-
CJAP155077:0:Tyes0234-
CJEI306537:0:Tyes---0-
CJEJ192222:0:Tyes----0
CJEJ195099:0:Tno----0
CJEJ354242:2:Tyes----0
CJEJ360109:0:Tyes----0
CJEJ407148:0:Tno----0
CKLU431943:1:Tyes30080-10522506
CKOR374847:0:Tyes---0-
CMET456442:0:Tyes---0-
CMIC31964:2:Tyes-8180--
CMIC443906:2:Tyes-0854--
CNOV386415:0:Tyes0--267-
CPER195102:1:Tyes7649-0-
CPER195103:0:Tno3588-0-
CPER289380:3:Tyes2--0-
CPHY357809:0:Tyes815--0-
CPSY167879:0:Tyes40614060014062
CRUT413404:0:Tyes---0-
CSAL290398:0:Tyes12340
CSP501479:6:Fyes----0
CSP501479:7:Fyes0----
CSP501479:8:Fyes-0---
CSP78:2:Tyes02919---
CTEP194439:0:Tyes---0-
CTET212717:0:Tyes0----
CVES412965:0:Tyes---0-
CVIO243365:0:Tyes2191010-0-
DARO159087:0:Tyes25640-774-
DETH243164:0:Tyes---0-
DGEO319795:1:Tyes0--1248638
DHAF138119:0:Tyes25290-21734059
DNOD246195:0:Tyes-0---
DOLE96561:0:Tyes---0-
DPSY177439:2:Tyes27913750--
DRAD243230:3:Tyes7--290
DRED349161:0:Tyes0----
DSHI398580:5:Tyes3316---0
DSP216389:0:Tyes---0-
DSP255470:0:Tno---0-
ECAR218491:0:Tyes54306
ECOL199310:0:Tno54309
ECOL316407:0:Tno23460
ECOL331111:6:Tno54309
ECOL362663:0:Tno43206
ECOL364106:1:Tno43208
ECOL405955:2:Tyes43206
ECOL409438:6:Tyes54308
ECOL413997:0:Tno43206
ECOL439855:4:Tno54308
ECOL469008:0:Tno34580
ECOL481805:0:Tno23460
ECOL585034:0:Tno43208
ECOL585035:0:Tno43207
ECOL585055:0:Tno43207
ECOL585056:2:Tno43207
ECOL585057:0:Tno43206
ECOL585397:0:Tno43207
ECOL83334:0:Tno43206
ECOLI:0:Tno43206
ECOO157:0:Tno43207
EFAE226185:3:Tyes0--2281-
EFER585054:1:Tyes43206
ELIT314225:0:Tyes23922230--0
ESP42895:1:Tyes43206
FALN326424:0:Tyes-0---
FJOH376686:0:Tyes-0--1333
FMAG334413:1:Tyes0--33-
FNOD381764:0:Tyes695--0-
FNUC190304:0:Tyes---0246
FPHI484022:1:Tyes-1356--0
FRANT:0:Tno-265--0
FSP106370:0:Tyes-0---
FSP1855:0:Tyes-0---
FTUL351581:0:Tno-0--220
FTUL393011:0:Tno-0--188
FTUL393115:0:Tyes-264--0
FTUL401614:0:Tyes-171--0
FTUL418136:0:Tno-0--791
FTUL458234:0:Tno-0--203
GBET391165:0:Tyes0----
GFOR411154:0:Tyes-2299--0
GKAU235909:1:Tyes140-23542884
GMET269799:1:Tyes0-159073129
GOXY290633:5:Tyes0675---
GSUL243231:0:Tyes1646-01652-
GTHE420246:1:Tyes120-21612657
GURA351605:0:Tyes0-1861154846
GVIO251221:0:Tyes0--994-
HARS204773:0:Tyes345966-0-
HAUR316274:2:Tyes----0
HBUT415426:0:Tyes---0-
HCHE349521:0:Tyes12340420
HDUC233412:0:Tyes21-0428
HHAL349124:0:Tyes5490-1609-
HINF281310:0:Tyes2660--265
HINF374930:0:Tyes13790--1380
HINF71421:0:Tno2450--244
HMAR272569:8:Tyes---0-
HMOD498761:0:Tyes1659778-02309
HMUK485914:1:Tyes---0-
HNEP81032:0:Tyes02774--2069
HSOM205914:1:Tyes2021--0
HSOM228400:0:Tno14451446--0
HWAL362976:1:Tyes---0-
ILOI283942:0:Tyes18001799-500
JSP290400:1:Tyes03268--461
JSP375286:0:Tyes01840-212-
KPNE272620:2:Tyes43205
KRAD266940:2:Fyes-0---
LACI272621:0:Tyes0----
LBIF355278:2:Tyes0--19722824
LBIF456481:2:Tno0--20302925
LBOR355276:1:Tyes----0
LBOR355277:1:Tno----0
LBRE387344:2:Tyes0----
LCAS321967:1:Tyes1070--0-
LCHO395495:0:Tyes01430-353-
LDEL321956:0:Tyes0--1068-
LDEL390333:0:Tyes0--995-
LGAS324831:0:Tyes0----
LHEL405566:0:Tyes0----
LINN272626:1:Tno60-1869-
LINT189518:1:Tyes----0
LINT267671:1:Tno----0
LJOH257314:0:Tyes0----
LLAC272622:5:Tyes20720-1950-
LLAC272623:0:Tyes19440---
LMES203120:1:Tyes-0-292-
LMON169963:0:Tno60-1792-
LMON265669:0:Tyes60-1752-
LPLA220668:0:Tyes60-1900-
LPNE272624:0:Tno459--0-
LPNE297245:1:Fno460--0-
LPNE297246:1:Fyes570--0-
LPNE400673:0:Tno1258--0-
LREU557436:0:Tyes60---
LSAK314315:0:Tyes834840-0-
LSPH444177:1:Tyes0--16304040
LWEL386043:0:Tyes70-1813-
LXYL281090:0:Tyes-0---
MAER449447:0:Tyes4793--47600
MAQU351348:2:Tyes210-3
MBUR259564:0:Tyes--0--
MCAP243233:0:Tyes2507139225090-
MCAP340047:0:Tyes0----
MEXT419610:0:Tyes3712748--0
MFLA265072:0:Tyes0157-937-
MGIL350054:3:Tyes-0---
MHUN323259:0:Tyes---0-
MLAB410358:0:Tyes---0-
MLOT266835:2:Tyes14110--956
MMAG342108:0:Tyes04129---
MMAR368407:0:Tyes---0-
MMAR394221:0:Tyes01804--612
MPET420662:1:Tyes0480---
MSED399549:0:Tyes---0-
MSME246196:0:Tyes-0---
MSP164756:1:Tno-0---
MSP164757:0:Tno-0---
MSP189918:2:Tyes-0---
MSP266779:3:Tyes03390--3516
MSP400668:0:Tyes40210--3514
MSP409:2:Tyes60704388--0
MSUC221988:0:Tyes23122314-02343
MTHE264732:0:Tyes-0-1388537
MTHE349307:0:Tyes--0--
MVAN350058:0:Tyes-0---
MXAN246197:0:Tyes0----
NARO279238:0:Tyes30660--2829
NEUR228410:0:Tyes-0---
NEUT335283:2:Tyes-0---
NFAR247156:2:Tyes-3617-0-
NGON242231:0:Tyes3160---
NHAM323097:2:Tyes0274--213
NMEN122586:0:Tno7910---
NMEN122587:0:Tyes0839---
NMEN272831:0:Tno7710---
NMEN374833:0:Tno0840---
NMUL323848:3:Tyes---0-
NOCE323261:1:Tyes11720-1524-
NSP103690:6:Tyes0--1970-
NSP387092:0:Tyes----0
NWIN323098:0:Tyes0281--220
OANT439375:5:Tyes0746--432
OCAR504832:0:Tyes5960--3510
OIHE221109:0:Tyes0--18432318
PACN267747:0:Tyes-0---
PAER208963:0:Tyes18201017
PAER208964:0:Tno17191016
PARC259536:0:Tyes0648---
PARS340102:0:Tyes--2170-
PATL342610:0:Tyes8990102151
PCAR338963:0:Tyes0--142-
PCRY335284:1:Tyes01130---
PDIS435591:0:Tyes-0--2460
PENT384676:0:Tyes2011123
PFLU205922:0:Tyes2018193
PFLU216595:1:Tyes2017183
PFLU220664:0:Tyes2015163
PGIN242619:0:Tyes-0--1314
PHAL326442:1:Tyes10610701105
PING357804:0:Tyes1252260
PINT246198:1:Tyes-922--0
PLUM243265:0:Fyes32-04
PMAR146891:0:Tyes410--0-
PMAR167539:0:Tyes729--0-
PMAR167540:0:Tyes393--0-
PMAR167542:0:Tyes434--0-
PMAR167546:0:Tyes408--0-
PMAR167555:0:Tyes363--0-
PMAR59920:0:Tno0--1582-
PMAR74546:0:Tyes387--0-
PMAR74547:0:Tyes---0-
PMAR93060:0:Tyes451--0-
PMEN399739:0:Tyes2027283
PMOB403833:0:Tyes---0-
PMUL272843:1:Tyes54320
PNAP365044:8:Tyes051---
PPEN278197:0:Tyes06---
PPRO298386:2:Tyes1413-015
PPUT160488:0:Tno2089-
PPUT351746:0:Tyes209103
PPUT76869:0:Tno209103
PRUM264731:0:Tyes-0--1977
PSP117:0:Tyes---0-
PSP296591:2:Tyes11820---
PSP312153:0:Tyes0--93-
PSP56811:2:Tyes13110---
PSTU379731:0:Tyes2027283
PSYR205918:0:Tyes12479247910
PSYR223283:2:Tyes10510851072
PTHE370438:0:Tyes---3240
RALB246199:0:Tyes632--03044
RCAS383372:0:Tyes---0-
RDEN375451:4:Tyes01323--899
RETL347834:5:Tyes4753946211-0
REUT264198:3:Tyes11762-0-
REUT381666:2:Tyes12670-0-
RFER338969:1:Tyes11451133-0-
RLEG216596:6:Tyes5304596-3880
RMET266264:2:Tyes11660-0-
RPAL258594:0:Tyes4450---0
RPAL316055:0:Tyes47140--688
RPAL316056:0:Tyes43750--54
RPAL316057:0:Tyes6270--87
RPAL316058:0:Tyes33089--0
RPOM246200:1:Tyes01362--666
RRUB269796:1:Tyes31900---
RSAL288705:0:Tyes--0--
RSOL267608:1:Tyes01543-941-
RSP101510:3:Fyes-4146-0-
RSP357808:0:Tyes---0-
RSPH272943:4:Tyes2599767--0
RSPH349101:2:Tno2576778--0
RSPH349102:5:Tyes10790--1001
RXYL266117:0:Tyes---20840
SACI330779:0:Tyes---0-
SACI56780:0:Tyes---04
SAGA205921:0:Tno17100-1434-
SAGA208435:0:Tno17810-1497-
SAGA211110:0:Tyes19160-1646-
SALA317655:1:Tyes01401--700
SAUR158878:1:Tno60-10091301
SAUR158879:1:Tno60-9151200
SAUR196620:0:Tno60-10131289
SAUR273036:0:Tno60-8921173
SAUR282458:0:Tno60-10421332
SAUR282459:0:Tno60-9951274
SAUR359786:1:Tno60-10381318
SAUR359787:1:Tno60-10371321
SAUR367830:3:Tno60-9511228
SAUR418127:0:Tyes60-10021291
SAUR426430:0:Tno0--9511225
SAUR93061:0:Fno60-10621365
SAUR93062:1:Tno60-9661255
SAVE227882:1:Fyes-0-509-
SBAL399599:3:Tyes1215220
SBAL402882:1:Tno1215220
SBOY300268:1:Tyes43206
SCO:2:Fyes-0---
SDEG203122:0:Tyes26602659265826570
SDEN318161:0:Tyes121081100
SDYS300267:1:Tyes45680
SELO269084:0:Tyes---0-
SENT209261:0:Tno23460
SENT220341:0:Tno23460
SENT295319:0:Tno43206
SENT321314:2:Tno43206
SENT454169:2:Tno43207
SEPI176279:1:Tyes---0286
SEPI176280:0:Tno---0276
SERY405948:0:Tyes--10880-
SFLE198214:0:Tyes43207
SFLE373384:0:Tno43206
SFUM335543:0:Tyes---0-
SGLO343509:3:Tyes43205
SGOR29390:0:Tyes0124---
SHAE279808:0:Tyes1375--2800
SHAL458817:0:Tyes15141016
SHIGELLA:0:Tno23460
SLAC55218:1:Fyes02084--783
SLOI323850:0:Tyes36043603013605
SMAR399550:0:Tyes---0-
SMED366394:3:Tyes02951--3088
SMEL266834:2:Tyes4853275--0
SMUT210007:0:Tyes1860---
SONE211586:1:Tyes1215280
SPEA398579:0:Tno1215160
SPNE1313:0:Tyes20670---
SPNE170187:0:Tyes064---
SPNE171101:0:Tno20530---
SPNE487213:0:Tno19900---
SPNE487214:0:Tno22490---
SPNE488221:0:Tno21450---
SPRO399741:1:Tyes25452544254325410
SPYO160490:0:Tno1230-356-
SPYO186103:0:Tno980-376-
SPYO193567:0:Tno1260-1594-
SPYO198466:0:Tno890-306-
SPYO286636:0:Tno1970-436-
SPYO293653:0:Tno1390-399-
SPYO319701:0:Tyes1340-386-
SPYO370551:0:Tno1400-403-
SPYO370552:0:Tno1380-399-
SPYO370553:0:Tno1390-415-
SPYO370554:0:Tyes1430-398-
SRUB309807:1:Tyes----0
SSAP342451:2:Tyes1283--2780
SSED425104:0:Tyes15141016
SSOL273057:0:Tyes---0-
SSON300269:1:Tyes43205
SSP1131:0:Tyes1076--0-
SSP1148:0:Tyes1341--0-
SSP292414:2:Tyes23540--1900
SSP321327:0:Tyes315--0-
SSP321332:0:Tyes882--0-
SSP387093:0:Tyes----0
SSP644076:6:Fyes8360--234
SSP64471:0:Tyes992--0-
SSP84588:0:Tyes949--0-
SSP94122:1:Tyes1215220
SSUI391295:0:Tyes20140-1628-
SSUI391296:0:Tyes381--0-
STHE264199:0:Tyes1680---
STHE292459:0:Tyes01918-472-
STHE299768:0:Tno1680---
STHE322159:2:Tyes1440---
STOK273063:0:Tyes---0-
STYP99287:1:Tyes43206
SWOL335541:0:Tyes-0---
TCRU317025:0:Tyes1664017731772-
TDEN243275:0:Tyes2526--0-
TDEN292415:0:Tyes5332846220-
TDEN326298:0:Tyes----0
TELO197221:0:Tyes388--0-
TERY203124:0:Tyes1022--0-
TFUS269800:0:Tyes-0482--
TKOD69014:0:Tyes--0--
TLET416591:0:Tyes---0-
TMAR243274:0:Tyes205--0-
TPEN368408:1:Tyes--0619-
TPET390874:0:Tno0--183-
TPSE340099:0:Tyes0--353-
TROS309801:1:Tyes---0-
TSP1755:0:Tyes757--2610
TSP28240:0:Tyes0--202-
TTEN273068:0:Tyes408--0458
TTHE262724:1:Tyes0--10601192
TTHE300852:2:Tyes635--17080
TTUR377629:0:Tyes0123833
VCHO:0:Tyes1413-016
VCHO345073:1:Tno1514-016
VFIS312309:2:Tyes1413-015
VPAR223926:1:Tyes12-160
VVUL196600:2:Tyes12-190
VVUL216895:1:Tno1514-016
XAUT78245:1:Tyes01426--1629
XAXO190486:0:Tyes17480-1767-
XCAM190485:0:Tyes16610-1679-
XCAM314565:0:Tno171817-0-
XCAM316273:0:Tno17710-1791-
XCAM487884:0:Tno191884-0-
XFAS160492:2:Tno1546--0-
XFAS183190:1:Tyes911--0-
XFAS405440:0:Tno1004--0-
XORY291331:0:Tno4790-461-
XORY342109:0:Tyes4860-469-
XORY360094:0:Tno01516-37-
YENT393305:1:Tyes43205
YPES187410:5:Tno12350
YPES214092:3:Tno12360
YPES349746:2:Tno43205
YPES360102:3:Tyes43205
YPES377628:2:Tno43205
YPES386656:2:Tno12350
YPSE273123:2:Tno43205
YPSE349747:2:Tno43205
ZMOB264203:0:Tyes0--648-



Back to top