CANDIDATE ID: 610

CANDIDATE ID: 610

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9892950e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7312 (yfgD) (b2495)
   Products of gene:
     - G7312-MONOMER (predicted oxidoreductase)

- G7311 (yfgC) (b2494)
   Products of gene:
     - G7311-MONOMER (predicted peptidase)

- G7310 (yfgO) (b2493)
   Products of gene:
     - G7310-MONOMER (predicted inner membrane protein)

- EG11149 (gcvR) (b2479)
   Products of gene:
     - EG11149-MONOMER (GcvR predicted transcriptional regulator)
     - MONOMER0-941 (GcvR-gly)

- EG10658 (bamC) (bamC)
   Products of gene:
     - EG10658-MONOMER (BamC)
     - CPLX0-3933 (Outer Membrane Protein Assembly Complex)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 78
Effective number of orgs (counting one per cluster within 468 clusters): 41

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2174
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MCAP243233 ncbi Methylococcus capsulatus Bath4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
HCHE349521 ncbi Hahella chejuensis KCTC 23964
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABOR393595 ncbi Alcanivorax borkumensis SK24


Names of the homologs of the genes in the group in each of these orgs
  G7312   G7311   G7310   EG11149   EG10658   
YPSE349747 YPSIP31758_1238YPSIP31758_1239YPSIP31758_1240YPSIP31758_1246YPSIP31758_1248
YPSE273123 YPTB2791YPTB2790YPTB2789YPTB2784YPTB2782
YPES386656 YPDSF_2174YPDSF_2173YPDSF_2172YPDSF_2168YPDSF_2166
YPES377628 YPN_1314YPN_1315YPN_1316YPN_1322YPN_1324
YPES360102 YPA_2261YPA_2260YPA_2259YPA_2254YPA_2252
YPES349746 YPANGOLA_A3126YPANGOLA_A3127YPANGOLA_A3128YPANGOLA_A3131YPANGOLA_A3133
YPES214092 YPO3070YPO3069YPO3068YPO3063YPO3061
YPES187410 Y1411Y1412Y1413Y1419
YENT393305 YE1131YE1132YE1133YE1136YE1138
VVUL216895 VV1_1906VV1_1907VV1_1909VV1_1911VV1_1913
VVUL196600 VV2509VV2508VV2507VV2505VV2503
VPAR223926 VP2279VP2278VP2276VP2274VP2272
VFIS312309 VF1923VF1922VF1921VF1919VF1917
VCHO345073 VC0395_A1745VC0395_A1744VC0395_A1742VC0395_A1739VC0395_A1737
VCHO VC2165VC2164VC2162VC2159VC2156
STYP99287 STM2495STM2494STM2493STM2490STM2488
SSP94122 SHEWANA3_1648SHEWANA3_1649SHEWANA3_1651SHEWANA3_1655SHEWANA3_1657
SSON300269 SSO_2577SSO_2576SSO_2575SSO_2560SSO_2558
SSED425104 SSED_2438SSED_2437SSED_2435SSED_2431SSED_2429
SPRO399741 SPRO_3518SPRO_3517SPRO_3512SPRO_3510SPRO_3508
SPEA398579 SPEA_1970SPEA_1971SPEA_1973SPEA_1979SPEA_1981
SONE211586 SO_2871SO_2869SO_2867SO_1878
SLOI323850 SHEW_1840SHEW_1841SHEW_1843SHEW_1847SHEW_1849
SHIGELLA S2688S2687PERMNLPB
SHAL458817 SHAL_2329SHAL_2328SHAL_2326SHAL_2322
SGLO343509 SG0250SG1729SG1727SG1725
SFLE373384 SFV_2540SFV_2539SFV_2538SFV_2524SFV_2522
SFLE198214 AAN44040.1AAN44039.1AAN44038.1AAN44025.1AAN44023.1
SENT454169 SEHA_C2754SEHA_C2753SEHA_C2752SEHA_C2749SEHA_C2747
SENT321314 SCH_2492SCH_2491SCH_2490SCH_2485SCH_2483
SENT295319 SPA0372SPA0373SPA0379SPA0381
SENT220341 STY2736STY2735STY2734STY2728STY2726
SENT209261 T0362T0363T0364T0369T0371
SDYS300267 SDY_2684SDY_2683SDY_2682SDY_2668SDY_2666
SDEN318161 SDEN_1646SDEN_1647SDEN_1649SDEN_1734
SBOY300268 SBO_2516SBO_2515SBO_2514SBO_2496SBO_2494
SBAL402882 SHEW185_1782SHEW185_1783SHEW185_1785SHEW185_2591
SBAL399599 SBAL195_1826SBAL195_1827SBAL195_1829SBAL195_2668
PPUT76869 PPUTGB1_1247PPUTGB1_4186PPUTGB1_4184PPUTGB1_4182
PPUT351746 PPUT_4072PPUT_1262PPUT_1264PPUT_1266
PPUT160488 PP_1645PP_1232PP_1234PP_1236
PPRO298386 PBPRA2903PBPRA2902PBPRA2901PBPRA2899PBPRA2897
PMUL272843 PM1130PM1190PM1131PM1050
PLUM243265 PLU2751PLU2750PLU2749PLU2747PLU2745
PHAL326442 PSHAA1133PSHAA1134PSHAA1137PSHAA1123
PATL342610 PATL_2484PATL_2482PATL_2481PATL_2479
NOCE323261 NOC_0186NOC_2619NOC_0190NOC_2525
MSUC221988 MS1959MS0437MS1958MS0267
MCAP243233 MCA_2520MCA_1330MCA_0662MCA_0665
KPNE272620 GKPORF_B2138GKPORF_B2137GKPORF_B2135GKPORF_B2133GKPORF_B2131
HCHE349521 HCH_01858HCH_04911HCH_04909HCH_04907
ESP42895 ENT638_2979ENT638_2978ENT638_2977ENT638_2975ENT638_2973
EFER585054 EFER_0681EFER_0682EFER_0683EFER_0696EFER_0698
ECOO157 Z3758Z3757PERMGCVRNLPB
ECOL83334 ECS3357ECS3356ECS3355ECS3341ECS3339
ECOL585397 ECED1_2918ECED1_2917ECED1_2916ECED1_2914ECED1_2912
ECOL585057 ECIAI39_2636ECIAI39_2635ECIAI39_2633ECIAI39_2618ECIAI39_2616
ECOL585056 ECUMN_2808ECUMN_2807ECUMN_2806ECUMN_2792ECUMN_2790
ECOL585055 EC55989_2780EC55989_2779EC55989_2778EC55989_2762EC55989_2760
ECOL585035 ECS88_2666ECS88_2665ECS88_2663ECS88_2661ECS88_2659
ECOL585034 ECIAI1_2547ECIAI1_2546ECIAI1_2545ECIAI1_2530ECIAI1_2528
ECOL481805 ECOLC_1181ECOLC_1182ECOLC_1183ECOLC_1197ECOLC_1199
ECOL469008 ECBD_1193ECBD_1194ECBD_1195ECBD_1210ECBD_1212
ECOL439855 ECSMS35_2642ECSMS35_2641ECSMS35_2640ECSMS35_2626ECSMS35_2624
ECOL413997 ECB_02387ECB_02386ECB_02385ECB_02371ECB_02369
ECOL409438 ECSE_2781ECSE_2780ECSE_2778ECSE_2763ECSE_2761
ECOL405955 APECO1_4074APECO1_4075APECO1_4076APECO1_4078APECO1_4080
ECOL364106 UTI89_C2811UTI89_C2810UTI89_C2808UTI89_C2806UTI89_C2804
ECOL362663 ECP_2497ECP_2496ECP_2495ECP_2493ECP_2491
ECOL331111 ECE24377A_3986ECE24377A_2776ECE24377A_2775ECE24377A_2761ECE24377A_2759
ECOL316407 ECK2491:JW2480:B2495ECK2490:JW2479:B2494ECK2489:JW2478:B2493ECK2475:JW2464:B2479ECK2473:JW2462:B2477
ECOL199310 C3012C3011C3009C3007C3005
ECAR218491 ECA1258ECA1259ECA1261ECA1263
CPSY167879 CPS_3191CPS_3190CPS_3187CPS_3185
ASAL382245 ASA_2681ASA_2683ASA_2685ASA_3397ASA_3395
AHYD196024 AHA_1678AHA_1676AHA_1674AHA_0895AHA_0897
AEHR187272 MLG_0826MLG_2483MLG_2482MLG_2479
ABOR393595 ABO_1544ABO_0771ABO_0773ABO_0775


Organism features enriched in list (features available for 75 out of the 78 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0006626392
Arrangment:Pairs 3.896e-630112
Arrangment:Singles 0.002109648286
Disease:Bubonic_plague 3.789e-666
Disease:Dysentery 3.789e-666
Disease:Gastroenteritis 1.427e-71013
Disease:Urinary_tract_infection 0.007200234
GC_Content_Range4:0-40 1.010e-132213
GC_Content_Range4:40-60 5.870e-2468224
GC_Content_Range4:60-100 0.00001325145
GC_Content_Range7:30-40 9.461e-102166
GC_Content_Range7:40-50 0.000033329117
GC_Content_Range7:50-60 5.612e-1339107
GC_Content_Range7:60-70 0.00005845134
Genome_Size_Range5:2-4 1.619e-77197
Genome_Size_Range5:4-6 3.156e-2564184
Genome_Size_Range9:2-3 2.074e-62120
Genome_Size_Range9:4-5 3.601e-93296
Genome_Size_Range9:5-6 2.500e-103288
Gram_Stain:Gram_Neg 5.870e-1672333
Habitat:Multiple 0.005898932178
Motility:No 1.332e-73151
Motility:Yes 2.213e-958267
Optimal_temp.:20-30 0.006026447
Optimal_temp.:28-30 0.006026447
Oxygen_Req:Aerobic 1.016e-67185
Oxygen_Req:Anaerobic 3.351e-61102
Oxygen_Req:Facultative 1.149e-2365201
Pathogenic_in:Human 0.000281941213
Pathogenic_in:No 0.000770417226
Pathogenic_in:Rodent 0.006026447
Shape:Coccus 0.0000705182
Shape:Rod 2.407e-1169347
Temp._range:Psychrophilic 0.002348759



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 320
Effective number of orgs (counting one per cluster within 468 clusters): 269

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal21
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.1
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINN272626 ncbi Listeria innocua Clip112621
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCHO395495 ncbi Leptothrix cholodnii SP-61
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
DARO159087 ncbi Dechloromonas aromatica RCB1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7312   G7311   G7310   EG11149   EG10658   
ZMOB264203 ZMO0192
WSUC273121 WS1322
WPIP80849 WB_0481
VEIS391735 VEIS_0392
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068 TTE1245
TSP28240
TSP1755 TETH514_1488
TROS309801
TPSE340099 TETH39_1051
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800 TFU_1521
TELO197221 TLL2310
TDEN326298 TMDEN_0149
TDEN243275 TDE_0410
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159 STER_1485
STHE292459 STH627
SSP64471
SSP387093 SUN_1478
SSP1148 SLR1971
SSP1131
SSOL273057
SSAP342451 SSP1773
SRUB309807 SRU_0068
SPNE488221 SP70585_1542
SPNE487214 SPH_1616
SPNE487213 SPT_1441
SPNE171101 SPR1357
SPNE170187 SPN05274
SPNE1313 SPJ_1405
SMUT210007 SMU_1454C
SMAR399550
SHAE279808 SH1946
SFUM335543 SFUM_3647
SERY405948 SACE_6023
SEPI176280 SE_0713
SEPI176279 SERP0602
SCO
SAVE227882 SAV5999
SARE391037
SACI56780 SYN_03195
SACI330779
RXYL266117 RXYL_0061
RTYP257363 RT0621
RSPH349102
RSPH349101 RSPH17029_3857
RSPH272943 RSP_3127
RSP357808 ROSERS_2291
RSP101510 RHA1_RO05655
RSAL288705
RRIC452659 RRIOWA_1157
RRIC392021 A1G_05375
RPRO272947
RMAS416276
RFER338969 RFER_4041
RFEL315456 RF_0401
RDEN375451 RD1_2044
RCON272944 RC0978
RCAS383372
RCAN293613 A1E_01595
RBEL391896 A1I_03450
RBEL336407 RBE_0605
RALB246199
RAKA293614 A1C_04960
PTOR263820
PTHE370438 PTH_1059
PSP312153 PNUC_1823
PSP117 RB11157
PMOB403833
PMAR93060
PMAR74547 PMT1256
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PHOR70601
PGIN242619 PG_2197
PFUR186497
PDIS435591 BDI_0072
PCAR338963 PCAR_1212
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OANT439375 OANT_3199
NSP387092
NSP35761 NOCA_3081
NSP103690 ALL4371
NSEN222891 NSE_0191
NPHA348780
NFAR247156 NFA31790
MVAN350058 MVAN_4784
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_1647
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918 MKMS_4336
MSP164757 MJLS_4629
MSP164756 MMCS_4250
MSME246196 MSMEG_5428
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_0230
MMAR426368
MMAR402880 MMARC5_0918
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_1942
MGEN243273
MFLO265311
MFLA265072 MFLA_0200
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_1155
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007 MAB_0992
LXYL281090
LWEL386043 LWE0551
LMON265669 LMOF2365_0613
LMON169963 LMO0584
LMES203120 LEUM_1860
LLAC272622 LACR_1351
LJOH257314 LJ_0830
LINT363253 LI0607
LINN272626 LIN0593
LDEL390333 LDB1304
LDEL321956 LBUL_1218
LCHO395495 LCHO_0492
KRAD266940 KRAD_0518
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761 HM1_1869
HMAR272569
HHEP235279
HBUT415426
HAUR316274 HAUR_3424
HACI382638
GVIO251221 GLL1625
GTHE420246 GTNG_2491
GOXY290633
GKAU235909 GK2557
FSUC59374
FSP1855
FSP106370
FNUC190304
FNOD381764
FMAG334413 FMG_0625
FALN326424 FRAAL1860
ERUM302409 ERGA_CDS_06770
ERUM254945 ERWE_CDS_06860
EFAE226185 EF_0699
ECHA205920 ECH_0347
ECAN269484 ECAJ_0661
DVUL882 DVU_1578
DSP255470
DSP216389
DRED349161 DRED_0768
DRAD243230 DR_0252
DPSY177439 DP2629
DNOD246195 DNO_0295
DHAF138119 DSY2422
DGEO319795
DETH243164
DDES207559 DDE_2122
DARO159087 DARO_3089
CVES412965 COSY_0305
CTRA471473
CTRA471472
CTET212717 CTC_01054
CTEP194439
CSUL444179
CRUT413404 RMAG_0324
CPRO264201 PC0573
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3920
CPER289380 CPR_1751
CPER195103
CPER195102 CPE1781
CPEL335992 SAR11_0991
CNOV386415 NT01CX_1730
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_1321
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1447
CHYD246194 CHY_0537
CHOM360107 CHAB381_0032
CGLU196627 CG1244
CFET360106 CFF8240_0148
CFEL264202
CEFF196164 CE1150
CDIF272563 CD1777
CDES477974
CCUR360105 CCV52592_0655
CCON360104 CCC13826_1711
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_0660
CBUR360115 COXBURSA331_A0764
CBUR227377 CBU_0649
CBOT536232 CLM_2872
CBOT515621 CLJ_B2795
CBOT498213 CLD_2000
CBOT441772 CLI_2628
CBOT441771 CLC_2436
CBOT441770 CLB_2506
CBOT36826 CBO2565
CBLO291272
CBLO203907
CBEI290402 CBEI_2417
CACE272562 CAC1677
CABO218497
BXEN266265 BXE_B0302
BTUR314724
BTRI382640 BT_2438
BTHE226186
BSUI470137 BSUIS_A1033
BSUI204722 BR_0989
BSP107806
BQUI283165 BQ12110
BMEL359391 BAB1_1008
BMEL224914 BMEI0992
BLON206672
BHER314723
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCAN483179 BCAN_A1006
BBUR224326
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_3305
AURANTIMONAS
ASP1667 ARTH_3105
APHA212042
APER272557
AORE350688 CLOS_1667
ANAE240017
AMET293826 AMET_2180
AMAR329726 AM1_3520
AMAR234826 AM979
ALAI441768
AFUL224325
AFER243159
ADEH290397 ADEH_0985
ACRY349163 ACRY_2812
ACEL351607
ABUT367737 ABU_1384
ABAC204669 ACID345_2567
AAUR290340
AAEO224324 AQ_972


Organism features enriched in list (features available for 302 out of the 320 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001989845112
Disease:None 0.00239764058
Disease:Pharyngitis 0.004955188
Disease:bronchitis_and_pneumonitis 0.004955188
Endospores:No 0.0001154130211
GC_Content_Range4:0-40 3.757e-6136213
GC_Content_Range4:40-60 0.0057975103224
GC_Content_Range4:60-100 0.003269762145
GC_Content_Range7:0-30 2.971e-134647
GC_Content_Range7:50-60 0.000726841107
GC_Content_Range7:60-70 0.000108851134
GC_Content_Range7:70-100 0.00065901111
Genome_Size_Range5:0-2 3.329e-17124155
Genome_Size_Range5:4-6 2.325e-1650184
Genome_Size_Range5:6-10 0.00211561547
Genome_Size_Range9:0-1 1.078e-82727
Genome_Size_Range9:1-2 2.559e-1097128
Genome_Size_Range9:4-5 4.920e-63096
Genome_Size_Range9:5-6 1.275e-92088
Genome_Size_Range9:6-8 0.0001917938
Gram_Stain:Gram_Neg 4.587e-13130333
Gram_Stain:Gram_Pos 0.007642289150
Habitat:Multiple 0.001028276178
Habitat:Specialized 2.892e-64353
Motility:No 0.000479695151
Motility:Yes 1.324e-8105267
Optimal_temp.:25-30 0.0001535219
Optimal_temp.:37 0.000016574106
Oxygen_Req:Aerobic 0.005250283185
Oxygen_Req:Anaerobic 1.511e-1891102
Oxygen_Req:Facultative 6.023e-1560201
Pathogenic_in:No 0.0017265133226
Shape:Irregular_coccus 0.00001111717
Shape:Rod 7.268e-13138347
Shape:Sphere 0.00046861719
Temp._range:Hyperthermophilic 1.768e-72323
Temp._range:Mesophilic 8.994e-6225473
Temp._range:Thermophilic 0.00001403035



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73480.5860
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50380.5666
AST-PWY (arginine degradation II (AST pathway))120600.5532
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.5315
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218770.5055
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37280.4795
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195700.4768
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4711
PWY-46 (putrescine biosynthesis III)138570.4639
LYXMET-PWY (L-lyxose degradation)87440.4633
SORBDEG-PWY (sorbitol degradation II)53330.4583
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121520.4518
RHAMCAT-PWY (rhamnose degradation)91440.4478
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176630.4413
GLYCOCAT-PWY (glycogen degradation I)246750.4386
PWY-5148 (acyl-CoA hydrolysis)227710.4291
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22190.4269
PWY-6196 (serine racemization)102450.4225
ECASYN-PWY (enterobacterial common antigen biosynthesis)191640.4217
THREONINE-DEG2-PWY (threonine degradation II)214680.4209
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91420.4203
ARABCAT-PWY (L-arabinose degradation I)128510.4198
MANNIDEG-PWY (mannitol degradation I)99440.4193
GLUTDEG-PWY (glutamate degradation II)194640.4159
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19170.4124
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96420.4028
PWY-5833 (CDP-3,6-dideoxyhexose biosynthesis)14140.4008
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))4017-.4376



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7311   G7310   EG11149   EG10658   
G73120.9989430.9990840.9986430.998589
G73110.9994610.9990210.998673
G73100.9991010.998675
EG111490.999105
EG10658



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PAIRWISE BLAST SCORES:

  G7312   G7311   G7310   EG11149   EG10658   
G73120.0f0----
G7311-0.0f0---
G7310--0.0f0--
EG11149---0.0f0-
EG10658----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7310 G7311 G7312 (centered at G7311)
EG11149 (centered at EG11149)
EG10658 (centered at EG10658)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7312   G7311   G7310   EG11149   EG10658   
317/623249/623301/62395/62366/623
AAEO224324:0:Tyes-0---
AAVE397945:0:Tyes03698---
ABAC204669:0:Tyes-0---
ABAU360910:0:Tyes02186---
ABOR393595:0:Tyes793024-
ABUT367737:0:Tyes0----
ACAU438753:0:Tyes33421550--
ACRY349163:8:Tyes0----
ADEH290397:0:Tyes-0---
AEHR187272:0:Tyes0164316421639-
AHYD196024:0:Tyes77176976702
AMAR234826:0:Tyes-0---
AMAR329726:9:Tyes-0---
AMET293826:0:Tyes--0--
AORE350688:0:Tyes--0--
APLE416269:0:Tyes32611800--
APLE434271:0:Tno33912280--
ASAL382245:5:Tyes024683681
ASP1667:3:Tyes--0--
ASP232721:2:Tyes0478---
ASP62928:0:Tyes08621080--
ASP62977:0:Tyes-01212--
ASP76114:2:Tyes-591-0-
AVAR240292:3:Tyes-0---
BABO262698:1:Tno0736---
BAMB339670:2:Tno0----
BAMB339670:3:Tno-0---
BAMB398577:2:Tno0----
BAMB398577:3:Tno-0---
BAMY326423:0:Tyes0-578--
BANT260799:0:Tno0-1587--
BANT261594:2:Tno0-1573--
BANT568206:2:Tyes1683-0--
BANT592021:2:Tno0-1676--
BBAC264462:0:Tyes01611---
BBAC360095:0:Tyes-0598--
BBRO257310:0:Tyes01124---
BCAN483179:1:Tno0----
BCEN331271:1:Tno0----
BCEN331271:2:Tno-0---
BCEN331272:2:Tyes0----
BCEN331272:3:Tyes-0---
BCER226900:1:Tyes0-1685--
BCER288681:0:Tno0-1539--
BCER315749:1:Tyes0-1031--
BCER405917:1:Tyes0-1542--
BCER572264:1:Tno0-1741--
BCLA66692:0:Tyes1413-0--
BHAL272558:0:Tyes2238-0--
BHEN283166:0:Tyes-4940--
BJAP224911:0:Fyes01211---
BLIC279010:0:Tyes0-688--
BMAL243160:0:Tno0----
BMAL243160:1:Tno-0---
BMAL320388:0:Tno0----
BMAL320388:1:Tno-0---
BMAL320389:0:Tyes0----
BMAL320389:1:Tyes-0---
BMEL224914:1:Tno0----
BMEL359391:1:Tno0----
BOVI236:1:Tyes0661---
BPAR257311:0:Tno0616---
BPER257313:0:Tyes01890---
BPET94624:0:Tyes15690---
BPSE272560:0:Tyes0----
BPSE272560:1:Tyes-0---
BPSE320372:0:Tno0----
BPSE320372:1:Tno-0---
BPSE320373:0:Tno0----
BPSE320373:1:Tno-0---
BPUM315750:0:Tyes0-655--
BQUI283165:0:Tyes-0---
BSP36773:1:Tyes0----
BSP36773:2:Tyes-0---
BSP376:0:Tyes9040---
BSUB:0:Tyes0-749--
BSUI204722:1:Tyes0----
BSUI470137:1:Tno0----
BTHA271848:0:Tno0----
BTHA271848:1:Tno-0---
BTHU281309:1:Tno0-1556--
BTHU412694:1:Tno0-1482--
BTRI382640:1:Tyes-0---
BVIE269482:6:Tyes0----
BVIE269482:7:Tyes-0---
BWEI315730:4:Tyes0-1578--
BXEN266265:1:Tyes0----
CACE272562:1:Tyes--0--
CAULO:0:Tyes0375-1564-
CBEI290402:0:Tyes--0--
CBOT36826:1:Tno--0--
CBOT441770:0:Tyes--0--
CBOT441771:0:Tno--0--
CBOT441772:1:Tno--0--
CBOT498213:1:Tno--0--
CBOT508765:1:Tyes1775-0--
CBOT515621:2:Tyes--0--
CBOT536232:0:Tno--0--
CBUR227377:1:Tyes--0--
CBUR360115:1:Tno--0--
CBUR434922:2:Tno--0--
CCON360104:2:Tyes-0---
CCUR360105:0:Tyes-0---
CDIF272563:1:Tyes0----
CDIP257309:0:Tyes20-0--
CEFF196164:0:Fyes0----
CFET360106:0:Tyes-0---
CGLU196627:0:Tyes0----
CHOM360107:1:Tyes-0---
CHUT269798:0:Tyes0300---
CHYD246194:0:Tyes--0--
CJAP155077:0:Tyes12533270--
CJEI306537:0:Tyes--0--
CKLU431943:1:Tyes--0--
CNOV386415:0:Tyes--0--
CPEL335992:0:Tyes-0---
CPER195102:1:Tyes--0--
CPER289380:3:Tyes--0--
CPHY357809:0:Tyes--0--
CPRO264201:0:Fyes-0---
CPSY167879:0:Tyes6520-
CRUT413404:0:Tyes0----
CSAL290398:0:Tyes0936934--
CSP501479:6:Fyes0----
CSP501479:8:Fyes--0--
CSP78:2:Tyes8030---
CTET212717:0:Tyes--0--
CVES412965:0:Tyes0----
CVIO243365:0:Tyes2480---
DARO159087:0:Tyes-0---
DDES207559:0:Tyes-0---
DHAF138119:0:Tyes--0--
DNOD246195:0:Tyes--0--
DOLE96561:0:Tyes-0379--
DPSY177439:2:Tyes-0---
DRAD243230:3:Tyes--0--
DRED349161:0:Tyes--0--
DSHI398580:5:Tyes106-0--
DVUL882:1:Tyes-0---
ECAN269484:0:Tyes-0---
ECAR218491:0:Tyes01-35
ECHA205920:0:Tyes-0---
ECOL199310:0:Tno76420
ECOL316407:0:Tno18171620
ECOL331111:6:Tno1180141320
ECOL362663:0:Tno65420
ECOL364106:1:Tno76420
ECOL405955:2:Tyes65420
ECOL409438:6:Tyes20191720
ECOL413997:0:Tno17161520
ECOL439855:4:Tno18171620
ECOL469008:0:Tno0121618
ECOL481805:0:Tno0121517
ECOL585034:0:Tno17161520
ECOL585035:0:Tno65420
ECOL585055:0:Tno16151420
ECOL585056:2:Tno18171620
ECOL585057:0:Tno17161520
ECOL585397:0:Tno65420
ECOL83334:0:Tno18171620
ECOLI:0:Tno18171620
ECOO157:0:Tno18171620
EFAE226185:3:Tyes--0--
EFER585054:1:Tyes0121517
ELIT314225:0:Tyes0934---
ERUM254945:0:Tyes-0---
ERUM302409:0:Tno-0---
ESP42895:1:Tyes65420
FALN326424:0:Tyes--0--
FJOH376686:0:Tyes203001839--
FMAG334413:1:Tyes--0--
FPHI484022:1:Tyes1010-0--
FRANT:0:Tno980-0--
FTUL351581:0:Tno0-871--
FTUL393011:0:Tno0-776--
FTUL393115:0:Tyes962-0--
FTUL401614:0:Tyes857-0--
FTUL418136:0:Tno0-986--
FTUL458234:0:Tno0-802--
GBET391165:0:Tyes0-114--
GFOR411154:0:Tyes057---
GKAU235909:1:Tyes--0--
GMET269799:1:Tyes-015422322-
GSUL243231:0:Tyes-010162013-
GTHE420246:1:Tyes--0--
GURA351605:0:Tyes-4003735-
GVIO251221:0:Tyes-0---
HARS204773:0:Tyes01994---
HAUR316274:2:Tyes--0--
HCHE349521:0:Tyes0293729352933-
HDUC233412:0:Tyes0-548--
HHAL349124:0:Tyes-320-
HINF281310:0:Tyes0-1-18
HINF374930:0:Tyes15-14-0
HINF71421:0:Tno0---16
HMOD498761:0:Tyes--0--
HNEP81032:0:Tyes6600---
HSOM205914:1:Tyes0-1--
HSOM228400:0:Tno0-1--
ILOI283942:0:Tyes310--
JSP290400:1:Tyes1934-0--
JSP375286:0:Tyes0225---
KPNE272620:2:Tyes76420
KRAD266940:2:Fyes--0--
LACI272621:0:Tyes0-13--
LBIF355278:2:Tyes24258830--
LBIF456481:2:Tno25149100--
LBOR355276:1:Tyes0-765--
LBOR355277:1:Tno0-1981--
LBRE387344:2:Tyes550-0--
LCAS321967:1:Tyes0-31--
LCHO395495:0:Tyes-0---
LDEL321956:0:Tyes--0--
LDEL390333:0:Tyes--0--
LGAS324831:0:Tyes12-0--
LHEL405566:0:Tyes0-11--
LINN272626:1:Tno--0--
LINT189518:1:Tyes0-1328--
LINT267671:1:Tno0-2325--
LINT363253:3:Tyes-0---
LJOH257314:0:Tyes--0--
LLAC272622:5:Tyes--0--
LLAC272623:0:Tyes142-0--
LMES203120:1:Tyes--0--
LMON169963:0:Tno--0--
LMON265669:0:Tyes--0--
LPLA220668:0:Tyes1933-0--
LPNE272624:0:Tno0926---
LPNE297245:1:Fno0886---
LPNE297246:1:Fyes0864---
LPNE400673:0:Tno0310---
LREU557436:0:Tyes0-805--
LSAK314315:0:Tyes0-22--
LSPH444177:1:Tyes0-1884--
LWEL386043:0:Tyes--0--
MABS561007:1:Tyes0----
MAQU351348:2:Tyes0769767--
MAVI243243:0:Tyes0----
MCAP243233:0:Tyes175861903-
MEXT419610:0:Tyes179212400--
MFLA265072:0:Tyes-0---
MGIL350054:3:Tyes0----
MLOT266835:2:Tyes15370---
MMAG342108:0:Tyes15310---
MMAR394221:0:Tyes15770---
MMAR402880:1:Tyes---0-
MMAR444158:0:Tyes---0-
MPET420662:1:Tyes22770---
MSME246196:0:Tyes0----
MSP164756:1:Tno0----
MSP164757:0:Tno0----
MSP189918:2:Tyes0----
MSP266779:3:Tyes01401---
MSP400668:0:Tyes27302--
MSP409:2:Tyes045774453--
MSUC221988:0:Tyes17521831751-0
MTHE264732:0:Tyes--0--
MVAN350058:0:Tyes0----
MXAN246197:0:Tyes03208446--
NARO279238:0:Tyes30990687--
NEUR228410:0:Tyes0224---
NEUT335283:2:Tyes01542---
NFAR247156:2:Tyes0----
NGON242231:0:Tyes1034-0--
NHAM323097:1:Tyes0----
NHAM323097:2:Tyes-0---
NMEN122586:0:Tno0-1169--
NMEN122587:0:Tyes0-1060--
NMEN272831:0:Tno891-0--
NMEN374833:0:Tno0-1076--
NMUL323848:3:Tyes01366---
NOCE323261:1:Tyes0239352296-
NSEN222891:0:Tyes--0--
NSP103690:6:Tyes-0---
NSP35761:1:Tyes0----
NWIN323098:0:Tyes269601473--
OANT439375:4:Tyes0----
OCAR504832:0:Tyes028---
OIHE221109:0:Tyes1148-0--
PAER208963:0:Tyes6220--
PAER208964:0:Tno05658--
PARC259536:0:Tyes74401422--
PATL342610:0:Tyes5320-
PCAR338963:0:Tyes-0---
PCRY335284:1:Tyes123101619--
PDIS435591:0:Tyes-0---
PENT384676:0:Tyes025532551--
PFLU205922:0:Tyes289502--
PFLU216595:1:Tyes221802--
PFLU220664:0:Tyes296102--
PGIN242619:0:Tyes-0---
PHAL326442:1:Tyes1011140-
PING357804:0:Tyes14402--
PINT246198:1:Tyes-6590--
PLUM243265:0:Fyes65420
PMAR74547:0:Tyes0----
PMEN399739:0:Tyes136102--
PMUL272843:1:Tyes8014081-0
PNAP365044:8:Tyes01344---
PPEN278197:0:Tyes573-0--
PPRO298386:2:Tyes65420
PPUT160488:0:Tno411024-
PPUT351746:0:Tyes2820024-
PPUT76869:0:Tno0296729652963-
PRUM264731:0:Tyes-01288--
PSP117:0:Tyes0----
PSP296591:2:Tyes02429---
PSP312153:0:Tyes-0---
PSP56811:2:Tyes3240---
PSTU379731:0:Tyes3220--
PSYR205918:0:Tyes217502--
PSYR223283:2:Tyes022412239--
PTHE370438:0:Tyes--0--
RAKA293614:0:Fyes--0--
RBEL336407:0:Tyes--0--
RBEL391896:0:Fno--0--
RCAN293613:0:Fyes--0--
RCON272944:0:Tno--0--
RDEN375451:4:Tyes--0--
RETL347834:5:Tyes01476---
REUT264198:3:Tyes275702252--
REUT381666:2:Tyes293902449--
RFEL315456:2:Tyes--0--
RFER338969:1:Tyes-0---
RLEG216596:6:Tyes129130140--
RMET266264:2:Tyes29350---
RPAL258594:0:Tyes17750---
RPAL316055:0:Tyes35040---
RPAL316056:0:Tyes670---
RPAL316057:0:Tyes31770---
RPAL316058:0:Tyes14290---
RPOM246200:1:Tyes1748-0--
RRIC392021:0:Fno--0--
RRIC452659:0:Tyes--0--
RRUB269796:1:Tyes0433172--
RSOL267608:1:Tyes277202107--
RSP101510:3:Fyes0----
RSP357808:0:Tyes--0--
RSPH272943:3:Tyes0----
RSPH349101:1:Tno0----
RTYP257363:0:Tno--0--
RXYL266117:0:Tyes--0--
SACI56780:0:Tyes-0---
SAGA205921:0:Tno0-13--
SAGA208435:0:Tno0-13--
SAGA211110:0:Tyes0-13--
SALA317655:1:Tyes11433940--
SAUR158878:1:Tno0-15--
SAUR158879:1:Tno0-14--
SAUR196620:0:Tno0-14--
SAUR273036:0:Tno0-14--
SAUR282458:0:Tno0-14--
SAUR282459:0:Tno0-14--
SAUR359786:1:Tno0-14--
SAUR359787:1:Tno0-14--
SAUR367830:3:Tno0-15--
SAUR418127:0:Tyes0-14--
SAUR426430:0:Tno0-15--
SAUR93061:0:Fno0-14--
SAUR93062:1:Tno0-13--
SAVE227882:1:Fyes0----
SBAL399599:3:Tyes013856-
SBAL402882:1:Tno013818-
SBOY300268:1:Tyes17161520
SDEG203122:0:Tyes017071705--
SDEN318161:0:Tyes01391-
SDYS300267:1:Tyes15141320
SELO269084:0:Tyes-0148--
SENT209261:0:Tno01268
SENT220341:0:Tno87620
SENT295319:0:Tno01-68
SENT321314:2:Tno98720
SENT454169:2:Tno76520
SEPI176279:1:Tyes--0--
SEPI176280:0:Tno--0--
SERY405948:0:Tyes0----
SFLE198214:0:Tyes17161520
SFLE373384:0:Tno15141320
SFUM335543:0:Tyes-0---
SGLO343509:3:Tyes01521-15191517
SGOR29390:0:Tyes199-0--
SHAE279808:0:Tyes--0--
SHAL458817:0:Tyes7640-
SHIGELLA:0:Tno131211-0
SLAC55218:1:Fyes2083-0--
SLOI323850:0:Tyes01379
SMED366394:1:Tyes0----
SMED366394:3:Tyes-22870--
SMEL266834:2:Tyes02222110--
SMUT210007:0:Tyes--0--
SONE211586:1:Tyes9769749720-
SPEA398579:0:Tno013911
SPNE1313:0:Tyes--0--
SPNE170187:0:Tyes--0--
SPNE171101:0:Tno--0--
SPNE487213:0:Tno--0--
SPNE487214:0:Tno--0--
SPNE488221:0:Tno--0--
SPRO399741:1:Tyes109420
SPYO160490:0:Tno0-101--
SPYO186103:0:Tno0-40--
SPYO193567:0:Tno44-0--
SPYO198466:0:Tno0-40--
SPYO286636:0:Tno0-53--
SPYO293653:0:Tno0-44--
SPYO319701:0:Tyes0-44--
SPYO370551:0:Tno0-103--
SPYO370552:0:Tno0-103--
SPYO370553:0:Tno0-47--
SPYO370554:0:Tyes0-105--
SRUB309807:1:Tyes-0---
SSAP342451:2:Tyes--0--
SSED425104:0:Tyes98620
SSON300269:1:Tyes18171620
SSP1148:0:Tyes-0---
SSP292414:2:Tyes957-0--
SSP321327:0:Tyes-5800--
SSP321332:0:Tyes-0430--
SSP387093:0:Tyes0----
SSP644076:6:Fyes0----
SSP644076:7:Fyes--0--
SSP84588:0:Tyes713-0--
SSP94122:1:Tyes01379
SSUI391295:0:Tyes0-49--
SSUI391296:0:Tyes0-51--
STHE264199:0:Tyes348-0--
STHE292459:0:Tyes0----
STHE299768:0:Tno366-0--
STHE322159:2:Tyes0----
STYP99287:1:Tyes76520
TCRU317025:0:Tyes6170---
TDEN243275:0:Tyes-0---
TDEN292415:0:Tyes-52722440-
TDEN326298:0:Tyes0----
TELO197221:0:Tyes-0---
TERY203124:0:Tyes-01545--
TFUS269800:0:Tyes0----
TPSE340099:0:Tyes--0--
TSP1755:0:Tyes--0--
TTEN273068:0:Tyes--0--
TTUR377629:0:Tyes176502--
VCHO:0:Tyes98630
VCHO345073:1:Tno87520
VEIS391735:1:Tyes-0---
VFIS312309:2:Tyes65420
VPAR223926:1:Tyes76420
VVUL196600:2:Tyes65420
VVUL216895:1:Tno01357
WPIP80849:0:Tyes-0---
WPIP955:0:Tyes-0446--
WSUC273121:0:Tyes-0---
XAUT78245:1:Tyes013663429--
XAXO190486:0:Tyes24690-716-
XCAM190485:0:Tyes0278-1054-
XCAM314565:0:Tno1071790-0-
XCAM316273:0:Tno0306-1106-
XCAM487884:0:Tno1172882-0-
XFAS160492:2:Tno-1638-0-
XFAS183190:1:Tyes-230-0-
XFAS405440:0:Tno-245-0-
XORY291331:0:Tno-757-0-
XORY342109:0:Tyes-703-0-
XORY360094:0:Tno10674982-0-
YENT393305:1:Tyes01257
YPES187410:5:Tno012-8
YPES214092:3:Tno98720
YPES349746:2:Tno01257
YPES360102:3:Tyes98720
YPES377628:2:Tno012810
YPES386656:2:Tno87620
YPSE273123:2:Tno98720
YPSE349747:2:Tno01279
ZMOB264203:0:Tyes-0---



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