CANDIDATE ID: 615

CANDIDATE ID: 615

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9907600e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11965 (mtlR) (b3601)
   Products of gene:
     - PD00369 (MtlR transcriptional repressor)
       Regulatees:
        TU00193 (mtlADR)
     - MONOMER0-2461 (MtlR-mannitol)

- EG11792 (cmtA) (b2933)
   Products of gene:
     - CMTA-MONOMER (CmtA)
     - CPLX-156 (CmtAB mannitol PTS permease)
       Reactions:
        phosphoenolpyruvate + D-mannitol[periplasmic space]  ->  mannitol-1-phosphate[cytosol] + pyruvate

- EG11162 (yggD) (b2929)
   Products of gene:
     - EG11162-MONOMER (predicted DNA-binding transcriptional regulator)

- EG10616 (mtlD) (b3600)
   Products of gene:
     - MANNPDEHYDROG-MONOMER (mannitol-1-phosphate 5-dehydrogenase)
       Reactions:
        mannitol-1-phosphate + NAD+  =  D-fructose-6-phosphate + NADH + H+
         In pathways
         HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)
         MANNIDEG-PWY (mannitol degradation I)

- EG10615 (mtlA) (b3599)
   Products of gene:
     - MTLA-MONOMER (MtlA)
     - CPLX-166 (mannitol PTS permease)
       Reactions:
        phosphoenolpyruvate + D-mannitol[periplasmic space]  ->  mannitol-1-phosphate[cytosol] + pyruvate



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 60
Effective number of orgs (counting one per cluster within 468 clusters): 26

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSON300269 ncbi Shigella sonnei Ss0465
SPRO399741 ncbi Serratia proteamaculans 5685
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PING357804 ncbi Psychromonas ingrahamii 375
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis5


Names of the homologs of the genes in the group in each of these orgs
  EG11965   EG11792   EG11162   EG10616   EG10615   
YPSE349747 YPSIP31758_4126YPSIP31758_4128YPSIP31758_4126YPSIP31758_4127YPSIP31758_4128
YPSE273123 YPTB3920YPTB3918YPTB3920YPTB3919YPTB3918
YPES386656 YPDSF_0027YPDSF_0025YPDSF_0027YPDSF_0026YPDSF_0025
YPES377628 YPN_3713YPN_3715YPN_3713YPN_3714YPN_3715
YPES360102 YPA_3016YPA_3014YPA_3016YPA_3015YPA_3014
YPES349746 YPANGOLA_A3778YPANGOLA_A3780YPANGOLA_A3778YPANGOLA_A3779YPANGOLA_A3780
YPES214092 YPO4066YPO4068YPO4066YPO4067YPO4068
YPES187410 Y4085Y4087Y4085Y4086Y4087
YENT393305 YE4146YE4148YE4146YE4147YE4148
VVUL216895 VV1_0640VV1_0638VV1_0640VV1_0639VV1_0638
VVUL196600 VV0503VV0505VV0503VV0504VV0505
VPAR223926 VP0368VPA0501VPA0503VP0369VP0370
VCHO345073 VC0395_0194VC0395_0196VC0395_0194VC0395_0195VC0395_0196
VCHO VCA1047VCA1045VCA1047VCA1046VCA1045
STYP99287 STM3687STM3685STM3687STM3686STM3685
SSON300269 SSO_3807SSO_3809SSO_3807SSO_3808SSO_3809
SPRO399741 SPRO_0074SPRO_0072SPRO_0074SPRO_0073SPRO_0072
SHIGELLA MTLRMTLAYGGDMTLDMTLA
SGLO343509 SG0016SG0014SG0016SG0015SG0014
SFLE373384 SFV_3936SFV_3938SFV_2981SFV_3937SFV_3938
SFLE198214 AAN45082.1AAN45080.1AAN44400.1AAN45081.1AAN45080.1
SENT454169 SEHA_C4010SEHA_C4008SEHA_C4010SEHA_C4009SEHA_C4008
SENT321314 SCH_3611SCH_3609SCH_3611SCH_3610SCH_3609
SENT220341 STY4109STY4111STY4109STY4110STY4111
SENT209261 T3832T3834T3832T3833T3834
SDYS300267 SDY_3147SDY_3144SDY_3147SDY_0907SDY_3144
SBOY300268 SBO_3599SBO_3056SBO_3059SBO_3598SBO_3597
PPRO298386 PBPRB0361PBPRB0363PBPRB0361PBPRB0362PBPRB0363
PMUL272843 PM1063PM1061PM1063PM1062PM1061
PING357804 PING_0090PING_0088PING_0984PING_0089PING_0088
MSUC221988 MS0409MS0411MS0409MS0410MS0411
KPNE272620 GKPORF_B3307GKPORF_A0091GKPORF_B3307GKPORF_B3305GKPORF_B3304
HSOM228400 HSM_0827HSM_0825HSM_0827HSM_0826HSM_0825
HSOM205914 HS_1250HS_1252HS_1250HS_1251HS_1252
ESP42895 ENT638_0134ENT638_0136ENT638_0134ENT638_0135ENT638_0136
EFER585054 EFER_3592EFER_2864EFER_2861EFER_3591EFER_3590
ECOO157 MTLRCMTAYGGDMTLDMTLA
ECOL83334 ECS4477ECS3808ECS3805ECS4476ECS4475
ECOL585397 ECED1_4283ECED1_3394ECED1_3390ECED1_4282ECED1_4281
ECOL585057 ECIAI39_4116ECIAI39_3351ECIAI39_3348ECIAI39_4115ECIAI39_4114
ECOL585056 ECUMN_4112ECUMN_3282ECUMN_3279ECUMN_4111ECUMN_4110
ECOL585055 EC55989_4065EC55989_3225EC55989_3222EC55989_4064EC55989_4063
ECOL585035 ECS88_4014ECS88_3214ECS88_3210ECS88_4013ECS88_4012
ECOL585034 ECIAI1_3771ECIAI1_3058ECIAI1_3054ECIAI1_3770ECIAI1_3769
ECOL481805 ECOLC_0111ECOLC_0778ECOLC_0781ECOLC_0112ECOLC_0113
ECOL469008 ECBD_0127ECBD_0806ECBD_0809ECBD_0128ECBD_0129
ECOL439855 ECSMS35_3934ECSMS35_3074ECSMS35_3071ECSMS35_3933ECSMS35_3932
ECOL413997 ECB_03456ECB_02763ECB_02760ECB_03455ECB_03454
ECOL409438 ECSE_3880ECSE_3201ECSE_3198ECSE_3879ECSE_3877
ECOL405955 APECO1_2856APECO1_3597APECO1_3599APECO1_2857APECO1_2858
ECOL364106 UTI89_C4139UTI89_C3320UTI89_C3317UTI89_C4138UTI89_C4137
ECOL362663 ECP_3699ECP_2926ECP_2923ECP_3698ECP_3697
ECOL331111 ECE24377A_4100ECE24377A_3267ECE24377A_3264ECE24377A_4099ECE24377A_4098
ECOL316407 ECK3590:JW3575:B3601ECK2928:JW2900:B2933ECK2925:JW2896:B2929ECK3589:JW3574:B3600ECK3588:JW3573:B3599
ECOL199310 C4418C3515C3512C4417C4416
ECAR218491 ECA0089ECA0087ECA0089ECA0088ECA0087
ASAL382245 ASA_3755ASA_3757ASA_3755ASA_3756ASA_3757
APLE434271 APJL_1661APJL_1663APJL_1662APJL_1663
APLE416269 APL_1628APL_1630APL_1629APL_1630
AHYD196024 AHA_0549AHA_0551AHA_0549AHA_0550AHA_0551


Organism features enriched in list (features available for 57 out of the 60 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000055223112
Arrangment:Singles 0.000137041286
Disease:Bubonic_plague 6.828e-766
Disease:Cholera 0.009407422
Disease:Dysentery 6.828e-766
Disease:Fibrinous_and_necrotizing_pleuropneumonia 0.009407422
Disease:Gastroenteritis 8.256e-91013
Disease:Typhoid_fever 0.009407422
Disease:Urinary_tract_infection 0.003230534
Disease:and_reproductive_problems 0.009407422
Disease:arthritis 0.009407422
Disease:myocarditis 0.009407422
Disease:primary_septicemia 0.009407422
Disease:wound_infections 0.009407422
GC_Content_Range4:0-40 7.236e-102213
GC_Content_Range4:40-60 1.037e-2255224
GC_Content_Range7:30-40 5.195e-72166
GC_Content_Range7:40-50 0.000947821117
GC_Content_Range7:50-60 1.259e-1334107
Genome_Size_Range5:2-4 0.00001976197
Genome_Size_Range5:4-6 1.741e-2050184
Genome_Size_Range9:4-5 1.273e-102996
Genome_Size_Range9:5-6 0.00001152188
Gram_Stain:Gram_Neg 7.354e-1456333
Motility:No 0.00002483151
Motility:Yes 0.000447638267
Optimal_temp.:20-30 0.002174647
Optimal_temp.:28-30 0.002174647
Optimal_temp.:37 0.001786319106
Oxygen_Req:Anaerobic 0.00084252102
Oxygen_Req:Facultative 5.727e-2454201
Pathogenic_in:Human 9.365e-941213
Pathogenic_in:No 1.003e-75226
Pathogenic_in:Porcine 0.009407422
Pathogenic_in:Rodent 0.002174647
Shape:Rod 2.835e-1054347
Temp._range:Mesophilic 0.001740854473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 463
Effective number of orgs (counting one per cluster within 468 clusters): 376

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79011
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B1
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis1
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SCO ncbi Streptomyces coelicolor A3(2)0
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H161
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL11
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H1
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08031
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BVIE269482 ncbi Burkholderia vietnamiensis G41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BSP36773 Burkholderia sp.1
BQUI283165 ncbi Bartonella quintana Toulouse1
BPSE320373 ncbi Burkholderia pseudomallei 6681
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BPSE272560 ncbi Burkholderia pseudomallei K962431
BPET94624 Bordetella petrii1
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BMAL320389 ncbi Burkholderia mallei NCTC 102471
BMAL320388 ncbi Burkholderia mallei SAVP11
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24241
BCEN331271 ncbi Burkholderia cenocepacia AU 10541
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAMB339670 ncbi Burkholderia ambifaria AMMD1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG11965   EG11792   EG11162   EG10616   EG10615   
ZMOB264203 ZMO1449
XFAS405440
XFAS183190
XFAS160492
XAUT78245 XAUT_0173
WSUC273121
WPIP955
WPIP80849
VEIS391735 VEIS_3560
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629 TERTU_0899
TTHE300852
TTHE262724
TSP28240 TRQ2_0879
TROS309801
TPET390874 TPET_0856
TPEN368408
TPAL243276
TMAR243274 TM_0068
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459 STH2312
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP644076 SCH4B_0014
SSP387093
SSP321332
SSP321327
SSP292414 TM1040_3866
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE487213
SPEA398579
SONE211586
SMEL266834 SMB20749
SMED366394 SMED_4245
SMAR399550
SLOI323850
SLAC55218 SL1157_A0216
SHAL458817
SGOR29390
SFUM335543
SERY405948 SACE_5054
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122 SDE_0941
SCO
SBAL402882
SBAL399599
SAVE227882
SALA317655 SALA_3047
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RTYP257363
RSP357808
RSP101510 RHA1_RO02810
RSAL288705 RSAL33209_3419
RRUB269796 RRU_A1972
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_1724
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596 RL0098
RFER338969
RFEL315456
REUT381666 H16_A1937
REUT264198
RETL347834 RHE_CH00089
RDEN375451 RD1_2933
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_0353
RAKA293614
PTOR263820
PTHE370438
PSP56811
PSP312153
PSP296591 BPRO_3970
PSP117 RB2403
PRUM264731 GFRORF1646
PPEN278197
PNAP365044 PNAP_2069
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442 PSHAB0208
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963
PATL342610 PATL_3649
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
OANT439375 OANT_4096
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_0014
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSP400668 MMWYL1_2779
MSP266779 MESO_4497
MSP189918 MKMS_4445
MSP164757 MJLS_4739
MSP164756 MMCS_4359
MSME246196 MSMEG_2907
MSED399549
MPET420662
MPEN272633
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_0223
MMAR368407
MMAR267377
MMAG342108
MLOT266835 MLR1886
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHUN323259
MGEN243273
MFLO265311
MFLA265072 MFLA_1729
MEXT419610
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_1052
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LWEL386043 LWE2600
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_0134
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940 KRAD_0583
JSP375286
JSP290400 JANN_2907
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569 PNG7388
HINF71421 HI_0448
HINF374930 CGSHIEE_00750
HINF281310 NTHI0575
HHEP235279
HHAL349124
HDUC233412
HCHE349521 HCH_01298
HBUT415426
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633 GOX1432
GMET269799
GFOR411154 GFO_1705
GBET391165 GBCGDNIH1_0412
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686 FJOH_4259
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580 DSHI_0969
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195 DNO_0610
DHAF138119
DETH243164
DDES207559
DARO159087
CVIO243365 CV_3052
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78 CAUL_1753
CSP501479 CSE45_4888
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_2741
CPER289380 CPR_0489
CPER195103 CPF_0501
CPER195102 CPE0521
CPEL335992
CNOV386415 NT01CX_1443
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_2197
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077 CJA_0180
CHYD246194
CHUT269798
CHOM360107
CGLU196627 CG0143
CFET360106
CFEL264202
CEFF196164 CE2378
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232 CLM_2364
CBOT515621 CLJ_B2360
CBOT508765
CBOT498213 CLD_2483
CBOT441772 CLI_2199
CBOT441771 CLC_2096
CBOT441770 CLB_2091
CBOT36826 CBO2152
CBLO291272
CBLO203907
CAULO CC1487
CABO218497
BXEN266265
BWEI315730 BCERKBAB4_0701
BVIE269482 BCEP1808_2702
BTUR314724
BTRI382640 BT_0154
BTHU412694 BALH_4764
BTHU281309 BT9727_0877
BTHE226186
BSUI470137
BSUI204722
BSP376
BSP36773 BCEP18194_A5916
BQUI283165 BQ01340
BPSE320373 BURPS668_A2094
BPSE320372 BURPS1710B_B0609
BPSE272560 BPSS1476
BPET94624 BPET3940
BPER257313
BPAR257311
BOVI236 GBOORFA0836
BMEL359391 BAB2_0426
BMEL224914 BMEII0478
BMAL320389 BMA10247_A1646
BMAL320388 BMASAVP1_0581
BMAL243160 BMA_A0768
BLON206672
BLIC279010 BL02815
BJAP224911 BLR6836
BHER314723
BHEN283166 BH01410
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264 BCA_5404
BCER405917 BCE_0881
BCER315749 BCER98_1170
BCER226900
BCEN331272 BCEN2424_4641
BCEN331271 BCEN_3727
BCAN483179 BCAN_B0825
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BANT592021
BANT568206
BANT261594
BANT260799
BAMB398577 BAMMC406_5134
BAMB339670 BAMB_4601
BAFZ390236
BABO262698 BRUAB2_0421
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62928
ASP232721
APHA212042
APER272557
AORE350688
ANAE240017 ANA_2774
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163 ACRY_0187
ACEL351607 ACEL_0905
ACAU438753 AZC_3347
ABUT367737 ABU_1393
ABOR393595
ABAU360910
ABAC204669
AAVE397945 AAVE_4252
AAEO224324


Organism features enriched in list (features available for 433 out of the 463 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0000115417
Arrangment:Pairs 1.937e-761112
Disease:Gastroenteritis 0.0001246313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0001288211
GC_Content_Range4:40-60 0.0016250152224
GC_Content_Range7:50-60 0.000558066107
Genome_Size_Range5:0-2 8.697e-11143155
Genome_Size_Range5:4-6 5.309e-11104184
Genome_Size_Range9:1-2 5.643e-13123128
Genome_Size_Range9:4-5 1.476e-65296
Genome_Size_Range9:5-6 0.00030275288
Gram_Stain:Gram_Neg 0.0072614236333
Habitat:Aquatic 0.00011628191
Habitat:Host-associated 0.0075082142206
Habitat:Multiple 0.0012664118178
Habitat:Specialized 0.00008205053
Motility:Yes 0.0019088184267
Optimal_temp.:- 0.0032687204257
Optimal_temp.:30-37 3.008e-7318
Oxygen_Req:Aerobic 0.0077830148185
Oxygen_Req:Anaerobic 1.101e-795102
Oxygen_Req:Facultative 6.757e-19104201
Pathogenic_in:Human 0.0002848141213
Pathogenic_in:No 0.0000125189226
Pathogenic_in:Plant 0.0001104415
Shape:Irregular_coccus 0.00586191717
Shape:Rod 0.0000980239347
Shape:Spiral 0.00002863434
Temp._range:Hyperthermophilic 0.00768232223
Temp._range:Mesophilic 1.269e-6333473
Temp._range:Thermophilic 0.00702913235



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50390.6846
GALACTITOLCAT-PWY (galactitol degradation)73470.6762
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45350.6445
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37280.5625
LYXMET-PWY (L-lyxose degradation)87440.5592
MANNIDEG-PWY (mannitol degradation I)99470.5576
SORBDEG-PWY (sorbitol degradation II)53330.5440
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121510.5412
RHAMCAT-PWY (rhamnose degradation)91430.5274
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31240.5258
PWY-46 (putrescine biosynthesis III)138510.4941
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134500.4912
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135500.4886
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176570.4840
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91400.4812
ARABCAT-PWY (L-arabinose degradation I)128480.4804
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19170.4800
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22180.4682
GLUTDEG-PWY (glutamate degradation II)194570.4502
PWY0-1182 (trehalose degradation II (trehalase))70320.4352
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218590.4336
ECASYN-PWY (enterobacterial common antigen biosynthesis)191550.4320
PWY-6196 (serine racemization)102390.4290
PWY0-301 (L-ascorbate degradation, anaerobic)84350.4287
PWY-5833 (CDP-3,6-dideoxyhexose biosynthesis)14130.4277
LACTOSEUTIL-PWY (lactose degradation II)53270.4270
PWY-6507 (5-dehydro-4-deoxy-D-glucuronate degradation)76330.4269
P441-PWY (superpathway of N-acetylneuraminate degradation)63290.4139
PWY-622 (starch biosynthesis)147460.4080
PWY-6374 (vibriobactin biosynthesis)77320.4064
AST-PWY (arginine degradation II (AST pathway))120410.4062
KDOSYN-PWY (KDO transfer to lipid IVA I)180510.4041
PWY0-1325 (superpathway of asparagine biosynthesis)181510.4023
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))4011-.4274



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11792   EG11162   EG10616   EG10615   
EG119650.9987660.9987870.9991430.999077
EG117920.9989230.9995120.999659
EG111620.9986840.998667
EG106160.999542
EG10615



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PAIRWISE BLAST SCORES:

  EG11965   EG11792   EG11162   EG10616   EG10615   
EG119650.0f0----
EG11792-0.0f0--1.4e-108
EG111623.0e-10-0.0f0--
EG10616---0.0f0-
EG10615-9.0e-105--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10615 EG10616 EG11965 (centered at EG10616)
EG11792 (centered at EG11792)
EG11162 (centered at EG11162)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11965   EG11792   EG11162   EG10616   EG10615   
61/623130/62360/623228/623192/623
AAUR290340:2:Tyes-1-01
AAVE397945:0:Tyes----0
ABUT367737:0:Tyes---0-
ACAU438753:0:Tyes---0-
ACEL351607:0:Tyes---0-
ACRY349163:8:Tyes----0
AHYD196024:0:Tyes02012
AMET293826:0:Tyes-3602-03604
ANAE240017:0:Tyes---0-
APLE416269:0:Tyes02-12
APLE434271:0:Tno02-12
ASAL382245:5:Tyes02012
ASP1667:3:Tyes-1-01
ASP62977:0:Tyes---0299
BABO262698:0:Tno---0-
BAMB339670:2:Tno---0-
BAMB398577:2:Tno---0-
BAMY326423:0:Tyes-0-20
BAPH198804:0:Tyes-1-01
BCAN483179:0:Tno---0-
BCEN331271:1:Tno---0-
BCEN331272:2:Tyes---0-
BCER288681:0:Tno-0--1789
BCER315749:1:Tyes----0
BCER405917:1:Tyes----0
BCER572264:1:Tno----0
BCLA66692:0:Tyes-3-03
BHAL272558:0:Tyes-3-03
BHEN283166:0:Tyes----0
BJAP224911:0:Fyes---0-
BLIC279010:0:Tyes---0-
BMAL243160:0:Tno---0-
BMAL320388:0:Tno---0-
BMAL320389:0:Tyes---0-
BMEL224914:0:Tno---0-
BMEL359391:0:Tno---0-
BOVI236:0:Tyes---0-
BPET94624:0:Tyes---0-
BPSE272560:0:Tyes---0-
BPSE320372:0:Tno---0-
BPSE320373:0:Tno---0-
BPUM315750:0:Tyes-0-20
BQUI283165:0:Tyes----0
BSP107806:2:Tyes-1-01
BSP36773:2:Tyes---0-
BSUB:0:Tyes-0-20
BTHA271848:0:Tno----0
BTHA271848:1:Tno---0-
BTHU281309:1:Tno-0---
BTHU412694:1:Tno----0
BTRI382640:1:Tyes----0
BVIE269482:7:Tyes---0-
BWEI315730:4:Tyes----0
CACE272562:1:Tyes-0-30
CAULO:0:Tyes---0-
CBEI290402:0:Tyes-283-30
CBOT36826:1:Tno----0
CBOT441770:0:Tyes----0
CBOT441771:0:Tno----0
CBOT441772:1:Tno----0
CBOT498213:1:Tno----0
CBOT515621:2:Tyes----0
CBOT536232:0:Tno----0
CDIF272563:1:Tyes-3-03
CEFF196164:0:Fyes---0-
CGLU196627:0:Tyes---0-
CJAP155077:0:Tyes---0-
CKLU431943:1:Tyes---0-
CMIC31964:2:Tyes-0-20
CMIC443906:2:Tyes-2-02
CNOV386415:0:Tyes----0
CPER195102:1:Tyes----0
CPER195103:0:Tno----0
CPER289380:3:Tyes----0
CPHY357809:0:Tyes---0-
CSAL290398:0:Tyes---3300
CSP501479:4:Fyes---0-
CSP78:2:Tyes---0-
CVIO243365:0:Tyes----0
DGEO319795:0:Tyes---0-
DGEO319795:1:Tyes----0
DNOD246195:0:Tyes----0
DSHI398580:5:Tyes---0-
ECAR218491:0:Tyes20210
ECOL199310:0:Tno89330892891
ECOL316407:0:Tno73930740741
ECOL331111:6:Tno81430813812
ECOL362663:0:Tno77130770769
ECOL364106:1:Tno81530814813
ECOL405955:2:Tyes72820727726
ECOL409438:6:Tyes69330692690
ECOL413997:0:Tno70030699698
ECOL439855:4:Tno82830827826
ECOL469008:0:Tno068168412
ECOL481805:0:Tno066967212
ECOL585034:0:Tno70720706705
ECOL585035:0:Tno77620775774
ECOL585055:0:Tno82630825824
ECOL585056:2:Tno81630815814
ECOL585057:0:Tno75430753752
ECOL585397:0:Tno85720856855
ECOL83334:0:Tno68530684683
ECOLI:0:Tno67630675674
ECOO157:0:Tno69830697696
EFAE226185:3:Tyes-0-20
EFER585054:1:Tyes72830727726
ESP42895:1:Tyes02012
FJOH376686:0:Tyes---0-
FSP1855:0:Tyes-3825-03825
GBET391165:0:Tyes----0
GFOR411154:0:Tyes---0-
GKAU235909:1:Tyes-3-03
GOXY290633:5:Tyes---0-
GTHE420246:1:Tyes-3-03
HAUR316274:2:Tyes-0--0
HCHE349521:0:Tyes---0-
HINF281310:0:Tyes----0
HINF374930:0:Tyes----0
HINF71421:0:Tno----0
HMAR272569:7:Tyes----0
HSOM205914:1:Tyes02012
HSOM228400:0:Tno20210
JSP290400:1:Tyes---0-
KPNE272620:0:Tyes-0---
KPNE272620:2:Tyes2-210
KRAD266940:2:Fyes---0-
LCAS321967:1:Tyes-3-03
LCHO395495:0:Tyes---0-
LINN272626:1:Tno-0--0
LLAC272622:5:Tyes-0-30
LLAC272623:0:Tyes---10
LMON169963:0:Tno-0--0
LMON265669:0:Tyes-0--0
LPLA220668:0:Tyes-0-30
LWEL386043:0:Tyes----0
LXYL281090:0:Tyes-2-02
MAVI243243:0:Tyes---0-
MCAP340047:0:Tyes-0-4407
MFLA265072:0:Tyes---0-
MGIL350054:3:Tyes-0--0
MHYO262719:0:Tyes-1-01
MHYO262722:0:Tno-1-01
MHYO295358:0:Tno-1-01
MLOT266835:2:Tyes---0-
MMAR394221:0:Tyes---0-
MMYC272632:0:Tyes-4-04
MPNE272634:0:Tyes-0-10
MPUL272635:0:Tyes-1-01
MSME246196:0:Tyes---0-
MSP164756:1:Tno---0-
MSP164757:0:Tno---0-
MSP189918:2:Tyes---0-
MSP266779:1:Tyes---0-
MSP400668:0:Tyes---0-
MSUC221988:0:Tyes02012
MTHE264732:0:Tyes----0
MVAN350058:0:Tyes-0--0
NSP35761:1:Tyes-0--0
OANT439375:4:Tyes---0-
OIHE221109:0:Tyes-3-03
PACN267747:0:Tyes-0--0
PAER208963:0:Tyes---13170
PAER208964:0:Tno---01242
PATL342610:0:Tyes---0-
PENT384676:0:Tyes---10020
PFLU205922:0:Tyes---18660
PFLU216595:1:Tyes---18550
PFLU220664:0:Tyes---21840
PHAL326442:0:Tyes---0-
PING357804:0:Tyes2086610
PLUM243265:0:Fyes---01866
PMEN399739:0:Tyes---37400
PMUL272843:1:Tyes20210
PNAP365044:8:Tyes---0-
PPRO298386:1:Tyes02012
PPUT160488:0:Tno---12620
PPUT351746:0:Tyes---28700
PPUT76869:0:Tno---7620
PRUM264731:0:Tyes---0-
PSP117:0:Tyes---0-
PSP296591:2:Tyes---0-
PSTU379731:0:Tyes---11950
PSYR205918:0:Tyes---16230
PSYR223283:2:Tyes---17340
RALB246199:0:Tyes---0-
RDEN375451:4:Tyes---0-
RETL347834:5:Tyes---0-
REUT381666:2:Tyes---0-
RLEG216596:6:Tyes---0-
RPOM246200:1:Tyes---0-
RRUB269796:1:Tyes----0
RSAL288705:0:Tyes---0-
RSOL267608:1:Tyes---0738
RSP101510:3:Fyes---0-
RSPH272943:4:Tyes---17450
RSPH349101:2:Tno---17090
RSPH349102:5:Tyes---17770
SALA317655:1:Tyes---0-
SARE391037:0:Tyes-0--0
SAUR158878:1:Tno-0-30
SAUR158879:1:Tno-0-30
SAUR196620:0:Tno-0-30
SAUR273036:0:Tno-0-30
SAUR282458:0:Tno-0-30
SAUR282459:0:Tno-0-30
SAUR359786:1:Tno-0-30
SAUR359787:1:Tno-0-30
SAUR367830:3:Tno-0-30
SAUR418127:0:Tyes-0-30
SAUR426430:0:Tno-0-30
SAUR93061:0:Fno-0-30
SAUR93062:1:Tno-0-30
SBOY300268:1:Tyes52503524523
SDEG203122:0:Tyes---0-
SDYS300267:1:Tyes21102108211002108
SENT209261:0:Tno02012
SENT220341:0:Tno02012
SENT295319:0:Tno-0-10
SENT321314:2:Tno20210
SENT454169:2:Tno20210
SERY405948:0:Tyes---0-
SFLE198214:0:Tyes6946920693692
SFLE373384:0:Tno9109120911912
SGLO343509:3:Tyes20210
SHAE279808:0:Tyes-3-03
SHIGELLA:0:Tno9259270926927
SLAC55218:0:Fyes---0-
SMED366394:2:Tyes---0-
SMEL266834:1:Tyes---0-
SMUT210007:0:Tyes-3-03
SPNE1313:0:Tyes-0-30
SPNE170187:0:Tyes-0-30
SPNE171101:0:Tno-0-30
SPNE487214:0:Tno-0-30
SPNE488221:0:Tno-0-30
SPRO399741:1:Tyes20210
SPYO286636:0:Tno-0--0
SSAP342451:2:Tyes-3-03
SSON300269:1:Tyes02012
SSP292414:0:Tyes---0-
SSP644076:1:Fyes---0-
STHE292459:0:Tyes----0
STYP99287:1:Tyes20210
TMAR243274:0:Tyes---0-
TPET390874:0:Tno---0-
TPSE340099:0:Tyes-3-03
TSP1755:0:Tyes-0-30
TSP28240:0:Tyes---0-
TTEN273068:0:Tyes-0-30
TTUR377629:0:Tyes---0-
VCHO:1:Fyes20210
VCHO345073:0:Tno02012
VEIS391735:1:Tyes---0-
VFIS312309:1:Tyes-02-0
VPAR223926:0:Tyes-02--
VPAR223926:1:Tyes0--12
VVUL196600:2:Tyes02012
VVUL216895:1:Tno20210
XAUT78245:1:Tyes---0-
XAXO190486:0:Tyes---17310
XCAM190485:0:Tyes---17370
XCAM314565:0:Tno---24690
XCAM316273:0:Tno---17660
XCAM487884:0:Tno---25510
XORY291331:0:Tno---16320
XORY342109:0:Tyes---15350
XORY360094:0:Tno---02969
YENT393305:1:Tyes02012
YPES187410:5:Tno02012
YPES214092:3:Tno02012
YPES349746:2:Tno02012
YPES360102:3:Tyes20210
YPES377628:2:Tno02012
YPES386656:2:Tno20210
YPSE273123:2:Tno20210
YPSE349747:2:Tno02012
ZMOB264203:0:Tyes---0-



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