CANDIDATE ID: 618

CANDIDATE ID: 618

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9942290e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7233 (emrK) (b2368)
   Products of gene:
     - G7233-MONOMER (EmrK putative membrane fusion protein)
     - CPLX0-2161 (EmrKY-TolC putative multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]

- EG13283 (emrY) (b2367)
   Products of gene:
     - EMRY-MONOMER (EmrY putative multidrug MFS transporter)
     - CPLX0-2161 (EmrKY-TolC putative multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]

- EG11439 (emrB) (b2686)
   Products of gene:
     - EMRB-MONOMER (EmrB multidrug MFS transporter)
     - CPLX0-2121 (EmrAB-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]

- EG11354 (emrA) (b2685)
   Products of gene:
     - EG11354-MONOMER (EmrA Membrane Fusion Protein)
     - CPLX0-2121 (EmrAB-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]

- EG10603 (mprA) (b2684)
   Products of gene:
     - EG10603-MONOMER (MprA)
     - CPLX0-7743 (MprA-CCCP)
     - CPLX0-7742 (MprA-2,4-dinitrophenol)
     - CPLX0-7418 (MprA transcriptional repressor)
       Regulatees:
        TU00459 (emrRAB)
        TU356 (nmpC)
        TU00233 (acrAB)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 198
Effective number of orgs (counting one per cluster within 468 clusters): 131

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79015
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SALA317655 ncbi Sphingopyxis alaskensis RB22564
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH345
RMAS416276 ncbi Rickettsia massiliae MTU54
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1184
RFEL315456 ncbi Rickettsia felis URRWXCal24
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 425
RCON272944 ncbi Rickettsia conorii Malish 74
RCAN293613 ncbi Rickettsia canadensis McKiel4
RAKA293614 ncbi Rickettsia akari Hartford4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L484
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf45
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-155
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
FJOH376686 ncbi Flavobacterium johnsoniae UW1014
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DPSY177439 ncbi Desulfotalea psychrophila LSv544
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE254
CCHL340177 ncbi Chlorobium chlorochromatii CaD34
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CAULO ncbi Caulobacter crescentus CB154
BXEN266265 ncbi Burkholderia xenovorans LB4004
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.5
BQUI283165 ncbi Bartonella quintana Toulouse4
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BOVI236 Brucella ovis4
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHEN283166 ncbi Bartonella henselae Houston-14
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCIC186490 Candidatus Baumannia cicadellinicola5
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC360095 ncbi Bartonella bacilliformis KC5834
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP15
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N5


Names of the homologs of the genes in the group in each of these orgs
  G7233   EG13283   EG11439   EG11354   EG10603   
ZMOB264203 ZMO0965ZMO0966ZMO0966ZMO0965
YPSE349747 YPSIP31758_3201YPSIP31758_3202YPSIP31758_3202YPSIP31758_3201YPSIP31758_3200
YPSE273123 YPTB0856YPTB0855YPTB0855YPTB0856YPTB0857
YPES386656 YPDSF_2903YPDSF_2904YPDSF_2904YPDSF_2903YPDSF_2902
YPES377628 YPN_0829YPN_0828YPN_0828YPN_0829YPN_0830
YPES360102 YPA_2758YPA_2759YPA_2759YPA_2758YPA_2757
YPES349746 YPANGOLA_A3460YPANGOLA_A3461YPANGOLA_A3461YPANGOLA_A3460YPANGOLA_A3458
YPES214092 YPO3267YPO3268YPO3268YPO3267YPO3266
YPES187410 Y0922Y0921Y0921Y0922Y0923
YENT393305 YE3242YE3243YE3243YE3242YE3240
XORY360094 XOOORF_2999XOOORF_2998XOOORF_2998XOOORF_2999XOOORF_2265
XORY342109 XOO1890XOO1891XOO1891XOO1890XOO2227
XORY291331 XOO2000XOO2001XOO2001XOO2000XOO2345
XCAM487884 XCC-B100_2898XCC-B100_2897XCC-B100_2897XCC-B100_2898XCC-B100_2887
XCAM316273 XCAORF_1669XCAORF_1670XCAORF_1670XCAORF_1669XCAORF_1682
XCAM314565 XC_2838XC_2837XC_2837XC_2838XC_2827
XCAM190485 XCC1399XCC1400XCC1400XCC1399XCC1411
XAXO190486 XAC1445XAC1446XAC1446XAC1445XAC1455
XAUT78245 XAUT_1512XAUT_1513XAUT_1513XAUT_1512
VVUL216895 VV2_0170VV2_0169VV2_0169VV2_0170
VVUL196600 VVA0680VVA0679VVA0679VVA0680
VPAR223926 VPA0097VPA0098VPA0098VPA0097VP1763
VFIS312309 VF0878VFA1104VFA1104VF0878VFA1063
VCHO345073 VC0395_A1021VC0395_A1022VC0395_A1022VC0395_A1021
VCHO VC1410VC1411VC1411VC1410
TTUR377629 TERTU_3717TERTU_3718TERTU_3718TERTU_3717TERTU_3383
STYP99287 STM2814STM2815STM2815STM2814STM2813
SSP94122 SHEWANA3_2225SHEWANA3_2224SHEWANA3_2224SHEWANA3_2225SHEWANA3_2859
SSON300269 SSO_2459SSO_2830SSO_2830SSO_2829SSO_2828
SSED425104 SSED_4202SSED_0453SSED_0453SSED_4202
SPRO399741 SPRO_3743SPRO_3744SPRO_3744SPRO_3743SPRO_3741
SPEA398579 SPEA_2191SPEA_2190SPEA_2190SPEA_2191
SONE211586 SO_0524SO_0525SO_0525SO_1582
SMEL266834 SMC03168SMC03167SMC03167SMC03168SMC01908
SMED366394 SMED_2795SMED_2794SMED_2794SMED_2795SMED_0877
SLOI323850 SHEW_1543SHEW_3405SHEW_3405SHEW_3406SHEW_3336
SHIGELLA EMRKEMRBEMRBEMRKEMRR
SHAL458817 SHAL_2164SHAL_2163SHAL_2163SHAL_0505
SFUM335543 SFUM_3316SFUM_3317SFUM_3317SFUM_3316
SFLE373384 SFV_2427SFV_2818SFV_2818SFV_2427SFV_2820
SFLE198214 AAN43946.1AAN44205.1AAN44205.1AAN43946.1AAN44204.1
SENT454169 SEHA_C2997SEHA_C2998SEHA_C2998SEHA_C2997SEHA_C2996
SENT321314 SCH_2748SCH_2749SCH_2749SCH_2748SCH_2747
SENT295319 SPA2672SPA2673SPA2673SPA2672SPA2671
SENT220341 STY2940STY2941STY2941STY2940STY2939
SENT209261 T2711T2712T2712T2711T2710
SDYS300267 SDY_2563SDY_2562SDY_2562SDY_2880SDY_2879
SBOY300268 SBO_2394SBO_2831SBO_2831SBO_2832SBO_2833
SBAL402882 SHEW185_3843SHEW185_3842SHEW185_3842SHEW185_3843SHEW185_1384
SBAL399599 SBAL195_3969SBAL195_3968SBAL195_3968SBAL195_3969SBAL195_1423
SALA317655 SALA_3115SALA_3117SALA_3117SALA_3115
RSPH349102 RSPH17025_2257RSPH17025_2256RSPH17025_2256RSPH17025_2257
RSPH349101 RSPH17029_0912RSPH17029_0913RSPH17029_0913RSPH17029_0912
RSPH272943 RSP_2237RSP_2238RSP_2238RSP_2237
RSOL267608 RSC1293RSC1292RSC1292RSC1293RSC0590
RRUB269796 RRU_A0859RRU_A0858RRU_A0858RRU_A0859RRU_A0861
RPAL316058 RPB_1980RPB_1981RPB_1981RPB_0207
RPAL316057 RPD_3406RPD_3405RPD_3405RPD_3406RPD_2769
RPAL316056 RPC_2180RPC_0486RPC_0486RPC_3595
RPAL316055 RPE_2092RPE_0190RPE_0190RPE_0189
RPAL258594 RPA3697RPA3698RPA3698RPA3697
RMET266264 RMET_4314RMET_2028RMET_2028RMET_4314RMET_3623
RMAS416276 RMA_0334RMA_0207RMA_0207RMA_0334
RLEG216596 RL4180RL3783RL3783RL4180RL0284
RFER338969 RFER_1515RFER_1516RFER_1516RFER_1515
RFEL315456 RF_1044RF_1124RF_1124RF_1044
REUT381666 H16_A2297H16_A2298H16_A2298H16_A2297H16_B0162
REUT264198 REUT_C6205REUT_C6206REUT_A2025REUT_A2024REUT_B5564
RETL347834 RHE_CH03652RHE_CH03356RHE_CH03356RHE_CH03652RHE_CH00278
RCON272944 RC0327RC0200RC0200RC0327
RCAN293613 A1E_01400A1E_00805A1E_00805A1E_01400
RAKA293614 A1C_01775A1C_01105A1C_01105A1C_01775
PSYR223283 PSPTO_3748PSPTO_3747PSPTO_3747PSPTO_3748PSPTO_3749
PSYR205918 PSYR_1730PSYR_1731PSYR_1731PSYR_1730PSYR_1729
PSP296591 BPRO_3235BPRO_3234BPRO_3234BPRO_3235BPRO_2197
PPUT76869 PPUTGB1_2373PPUTGB1_2374PPUTGB1_2374PPUTGB1_2373
PPUT351746 PPUT_2225PPUT_2226PPUT_2226PPUT_2225
PPUT160488 PP_3549PP_3548PP_3548PP_3549
PPRO298386 PBPRB1862PBPRB1863PBPRB1863PBPRB1862PBPRA2059
PNAP365044 PNAP_1445PNAP_1446PNAP_1446PNAP_1445
PMEN399739 PMEN_2735PMEN_2736PMEN_2736PMEN_2735PMEN_1499
PLUM243265 PLU1276PLU1275PLU1275PLU1276PLU1277
PFLU220664 PFL_3917PFL_3916PFL_3916PFL_3917PFL_3919
PFLU216595 PFLU3876PFLU3875PFLU3875PFLU3876PFLU3878
PFLU205922 PFL_3643PFL_3642PFL_3642PFL_3643PFL_3645
PENT384676 PSEEN2993PSEEN2992PSEEN2992PSEEN2993
PAER208964 PA5159PA5160PA5160PA5159PA5157
PAER208963 PA14_68130PA14_68140PA14_68140PA14_68130PA14_68110
OCAR504832 OCAR_5230OCAR_5231OCAR_5231OCAR_5230
OANT439375 OANT_4226OANT_4227OANT_4227OANT_4226OANT_4464
NMEN374833 NMCC_1826NMCC_1825NMCC_1825NMCC_1826
NMEN272831 NMC1853NMC1852NMC1852NMC1853
NMEN122587 NMA2169NMA2168NMA2168NMA2169
NMEN122586 NMB_0318NMB_0319NMB_0319NMB_0318
NHAM323097 NHAM_0616NHAM_0615NHAM_0615NHAM_0616
NGON242231 NGO1683NGO1682NGO1682NGO1683
NARO279238 SARO_1715SARO_1714SARO_1714SARO_1715
MSP409 M446_6561M446_6590M446_6560M446_6561M446_4993
MSP400668 MMWYL1_2004MMWYL1_0098MMWYL1_0098MMWYL1_2004
MSP266779 MESO_1920MESO_1919MESO_1919MESO_1920
MMAG342108 AMB3998AMB3999AMB3999AMB3998
MLOT266835 MLR8231MLR8233MLR8233MLR8231MLR3448
MEXT419610 MEXT_4102MEXT_4101MEXT_4101MEXT_4102
MCAP243233 MCA_2257MCA_2258MCA_2258MCA_2257
KPNE272620 GKPORF_B2341GKPORF_B2342GKPORF_B2342GKPORF_B2341GKPORF_B2340
JSP375286 MMA_1123MMA_1124MMA_1124MMA_1123MMA_1934
HINF71421 HI_0898HI_0897HI_0897HI_0898
HINF281310 NTHI1063NTHI1062NTHI1062NTHI1063
HARS204773 HEAR0985HEAR0986HEAR0986HEAR0985HEAR0983
GURA351605 GURA_2705GURA_2706GURA_2706GURA_2705GURA_3527
GSUL243231 GSU_1481GSU_1480GSU_1480GSU_1481
GOXY290633 GOX0784GOX0783GOX0783GOX0784
GMET269799 GMET_1375GMET_1374GMET_1374GMET_1375GMET_3450
GBET391165 GBCGDNIH1_1724GBCGDNIH1_1723GBCGDNIH1_1723GBCGDNIH1_1724
FTUL458234 FTA_0726FTA_0727FTA_0727FTA_0726
FTUL418136 FTW_0687FTW_0688FTW_0688FTW_0687
FTUL401614 FTN_1276FTN_1275FTN_1275FTN_1276
FTUL393115 FTF1257FTF1256FTF1256FTF1257
FTUL393011 FTH_0689FTH_0690FTH_0690FTH_0689
FTUL351581 FTL_0687FTL_0688FTL_0688FTL_0687
FRANT EMRA1EMRBEMRBEMRA1
FPHI484022 FPHI_1408FPHI_1409FPHI_1409FPHI_1408
FJOH376686 FJOH_1354FJOH_3377FJOH_4904FJOH_1354
ESP42895 ENT638_3163ENT638_3164ENT638_3164ENT638_3163ENT638_3162
ELIT314225 ELI_15015ELI_15010ELI_15010ELI_15015
EFER585054 EFER_0386EFER_0385EFER_0385EFER_0386EFER_0387
ECOO157 EMRKEMRBEMRBEMRAEMRR
ECOL83334 ECS3247ECS3548ECS3548ECS3547ECS3546
ECOL585397 ECED1_2815ECED1_3140ECED1_3140ECED1_3139ECED1_3138
ECOL585057 ECIAI39_2511ECIAI39_2876ECIAI39_2876ECIAI39_2875ECIAI39_2873
ECOL585056 ECUMN_2697ECUMN_3011ECUMN_3011ECUMN_3010ECUMN_3009
ECOL585055 EC55989_2661EC55989_2953EC55989_2953EC55989_2952EC55989_2951
ECOL585035 ECS88_2563ECS88_2951ECS88_2951ECS88_2950ECS88_2949
ECOL585034 ECIAI1_2433ECIAI1_2781ECIAI1_2781ECIAI1_2780ECIAI1_2779
ECOL481805 ECOLC_1301ECOLC_1302ECOLC_1302ECOLC_1022ECOLC_1023
ECOL469008 ECBD_1304ECBD_1305ECBD_1305ECBD_1035ECBD_1036
ECOL439855 ECSMS35_2518ECSMS35_2808ECSMS35_2808ECSMS35_2807ECSMS35_2806
ECOL413997 ECB_02278ECB_02541ECB_02541ECB_02540ECB_02539
ECOL409438 ECSE_2665ECSE_2939ECSE_2939ECSE_2938ECSE_2937
ECOL405955 APECO1_4168APECO1_4169APECO1_4169APECO1_4168APECO1_3838
ECOL364106 UTI89_C2700UTI89_C3046UTI89_C3046UTI89_C3045UTI89_C3044
ECOL362663 ECP_2393ECP_2651ECP_2651ECP_2650ECP_2649
ECOL331111 ECE24377A_2654ECE24377A_2969ECE24377A_2969ECE24377A_2968ECE24377A_2967
ECOL316407 ECK2364:JW2365:B2368ECK2680:JW2661:B2686ECK2680:JW2661:B2686ECK2679:JW2660:B2685ECK2678:JW2659:B2684
ECOL199310 C2904C3239C3239C3238C3237
ECAR218491 ECA3512ECA3513ECA3513ECA3512ECA3511
DPSY177439 DP0154DP0155DP0155DP0154
CVIO243365 CV_0767CV_0766CV_0766CV_0767CV_0769
CSP78 CAUL_3187CAUL_3188CAUL_3188CAUL_3187
CSP501479 CSE45_4792CSE45_4793CSE45_4793CSE45_4792
CSAL290398 CSAL_0552CSAL_0553CSAL_0553CSAL_0552
CPRO264201 PC0128PC0127PC0127PC0128
CCHL340177 CAG_0040CAG_0039CAG_0039CAG_0040
CBUR434922 COXBU7E912_0866COXBU7E912_0865COXBU7E912_0865COXBU7E912_0866
CBUR360115 COXBURSA331_A1150COXBURSA331_A1151COXBURSA331_A1151COXBURSA331_A1150
CBUR227377 CBU_0798CBU_0797CBU_0797CBU_0798
CAULO CC3714CC3715CC3715CC3714
BXEN266265 BXE_B0736BXE_B1129BXE_B1129BXE_B0736
BVIE269482 BCEP1808_1470BCEP1808_0055BCEP1808_1469BCEP1808_1470BCEP1808_1617
BTRI382640 BT_1746BT_1747BT_1747BT_2461
BTHA271848 BTH_I2560BTH_I0022BTH_I0022BTH_I2560BTH_I2391
BSUI470137 BSUIS_A1104BSUIS_A1103BSUIS_A1103BSUIS_A1104
BSUI204722 BR_1060BR_1059BR_1059BR_1060
BSP376 BRADO5674BRADO5120BRADO5120BRADO5674BRADO2387
BSP36773 BCEP18194_A4645BCEP18194_A3229BCEP18194_A3229BCEP18194_A4645BCEP18194_C6557
BQUI283165 BQ10020BQ10030BQ10030BQ12200
BPSE320373 BURPS668_1744BURPS668_0023BURPS668_1743BURPS668_1744BURPS668_1958
BPSE320372 BURPS1710B_A2078BURPS1710B_A0247BURPS1710B_A2077BURPS1710B_A2078BURPS1710B_A2285
BPSE272560 BPSL1914BPSL0022BPSL0022BPSL1914BPSL1752
BPET94624 BPET3075BPET3076BPET3076BPET3075BPET2973
BPER257313 BP2289BP2290BP2290BP2289BP2046
BOVI236 GBOORFA0119GBOORF1057GBOORF1057GBOORFA0119
BMEL224914 BMEII1118BMEI0927BMEI0927BMEII1118
BMAL320389 BMA10247_0995BMA10247_0994BMA10247_0994BMA10247_0995BMA10247_0906
BMAL320388 BMASAVP1_A1503BMASAVP1_A3503BMASAVP1_A3503BMASAVP1_A1503BMASAVP1_A1595
BMAL243160 BMA_1057BMA_2770BMA_2770BMA_1057BMA_1154
BJAP224911 BLL6622BLR7594BLL0931BLL6622BLR6843
BHEN283166 BH12700BH12710BH12710BH15290
BFRA295405 BF3297BF2678BF2678BF3297
BFRA272559 BF3136BF2700BF2700BF3136
BCIC186490 BCI_0460BCI_0459BCI_0459BCI_0460BCI_0109
BCEN331272 BCEN2424_1504BCEN2424_0047BCEN2424_1503BCEN2424_1504BCEN2424_1680
BCEN331271 BCEN_1024BCEN_0023BCEN_1023BCEN_1024BCEN_1200
BCAN483179 BCAN_A1075BCAN_A1074BCAN_A1074BCAN_A1075
BBRO257310 BB1888BB1887BB1887BB1888BB3375
BBAC360095 BARBAKC583_1088BARBAKC583_1089BARBAKC583_1089BARBAKC583_0117
BAMB398577 BAMMC406_1426BAMMC406_0046BAMMC406_1425BAMMC406_1426BAMMC406_1428
BAMB339670 BAMB_1386BAMB_0037BAMB_1385BAMB_1386BAMB_1388
ASP76114 EBA3446EBA3448EBA3448EBA3446EBA3444
ASP62977 ACIAD0926ACIAD0927ACIAD0927ACIAD0926ACIAD2333
ASP232721 AJS_0262AJS_0261AJS_0261AJS_0262
ASAL382245 ASA_3977ASA_3978ASA_3978ASA_3977
AHYD196024 AHA_0355AHA_0354AHA_0354AHA_0355
AFER243159 AFE_2181AFE_0913AFE_0913AFE_2181
ADEH290397 ADEH_1574ADEH_1573ADEH_1573ADEH_1574
ACRY349163 ACRY_0561ACRY_0562ACRY_1891ACRY_0561
ACAU438753 AZC_4436AZC_4437AZC_4437AZC_4436
ABAU360910 BAV2191BAV2192BAV2192BAV2191BAV2490


Organism features enriched in list (features available for 185 out of the 198 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 5.602e-61292
Disease:Bubonic_plague 0.000965366
Disease:Dysentery 0.000965366
Disease:Gastroenteritis 0.00083521013
Disease:Meningitis_and_septicemia 0.009915544
Disease:Opportunistic_infections 0.003099755
Disease:Tularemia 0.003099755
Endospores:No 5.666e-1133211
Endospores:Yes 1.413e-8153
GC_Content_Range4:0-40 9.004e-2021213
GC_Content_Range4:40-60 0.000195990224
GC_Content_Range4:60-100 1.050e-874145
GC_Content_Range7:30-40 3.634e-1121166
GC_Content_Range7:50-60 4.854e-756107
GC_Content_Range7:60-70 2.303e-1073134
Genome_Size_Range5:0-2 4.404e-1217155
Genome_Size_Range5:2-4 5.560e-1031197
Genome_Size_Range5:4-6 4.583e-20107184
Genome_Size_Range5:6-10 1.826e-63047
Genome_Size_Range9:1-2 5.669e-817128
Genome_Size_Range9:2-3 5.019e-815120
Genome_Size_Range9:3-4 0.00855601677
Genome_Size_Range9:4-5 2.969e-65096
Genome_Size_Range9:5-6 3.001e-125788
Genome_Size_Range9:6-8 2.545e-72738
Gram_Stain:Gram_Neg 1.911e-41175333
Habitat:Multiple 5.751e-782178
Habitat:Specialized 0.0000113453
Motility:No 1.992e-1117151
Motility:Yes 8.281e-8114267
Optimal_temp.:25-30 1.745e-101919
Optimal_temp.:35-37 0.0046861913
Oxygen_Req:Aerobic 0.001918373185
Oxygen_Req:Anaerobic 2.357e-99102
Oxygen_Req:Facultative 0.000015486201
Pathogenic_in:Animal 0.00490593066
Pathogenic_in:Human 0.000784084213
Pathogenic_in:No 0.001140456226
Shape:Coccus 2.141e-6982
Shape:Rod 4.544e-18156347
Shape:Sphere 0.0056940119
Shape:Spiral 0.0002063234
Temp._range:Mesophilic 0.0000115168473
Temp._range:Thermophilic 0.0000170135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 374
Effective number of orgs (counting one per cluster within 468 clusters): 301

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SGOR29390 Streptococcus gordonii Challis1
SGLO343509 ncbi Sodalis glossinidius morsitans1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2171
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16221
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS0
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R11
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BPAR257311 ncbi Bordetella parapertussis 128221
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62928 ncbi Azoarcus sp. BH721
ASP1667 Arthrobacter sp.1
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK21
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7233   EG13283   EG11439   EG11354   EG10603   
XFAS405440 XFASM12_0184
XFAS183190 PD_0175
XFAS160492 XF0216
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1230
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240 TRQ2_0218
TSP1755
TROS309801
TPSE340099 TETH39_1034
TPET390874 TPET_0220
TPEN368408
TPAL243276
TMAR243274 TM_0710
TLET416591 TLET_0315
TKOD69014
TFUS269800 TFU_0411
TERY203124
TELO197221
TDEN326298
TDEN292415 TBD_1028
TDEN243275
TCRU317025
TACI273075 TA0411
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459 STH1173
STHE264199
SSUI391296 SSU98_0608
SSUI391295 SSU05_0608
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327 CYA_2441
SSP292414
SSP1148
SSP1131
SSOL273057 SSO1082
SSAP342451 SSP0390
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007 SMU_1745C
SMAR399550
SLAC55218
SGOR29390 SGO_1299
SGLO343509 SG1907
SEPI176280 SE_2185
SEPI176279 SERP2196
SELO269084 SYC0391_D
SDEN318161 SDEN_3181
SCO SCO1098
SAVE227882 SAV1497
SAUR93062 SACOL2531
SAUR93061 SAOUHSC_02826
SAUR426430 NWMN_2418
SAUR418127 SAHV_2504
SAUR367830 SAUSA300_2459
SAUR359787 SAURJH1_2595
SAUR359786 SAURJH9_2543
SAUR282459 SAS2405
SAUR282458 SAR2600
SAUR273036 SAB2394C
SAUR196620 MW2440
SAUR158879 SA2308
SAUR158878 SAV2520
SARE391037
SAGA211110 GBS1897
SAGA208435 SAG_1910
SAGA205921 SAK_1868
SACI56780 SYN_00652
SACI330779 SACI_1956
RXYL266117 RXYL_1284
RSP357808
RSP101510 RHA1_RO06023
RSAL288705 RSAL33209_1538
RPOM246200 SPO_1261
RDEN375451 RD1_3650
RCAS383372
RBEL391896
RALB246199
PTOR263820 PTO1041
PSP312153
PSP117
PRUM264731 GFRORF0501
PPEN278197
PMUL272843
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198 PIN_0593
PING357804 PING_0613
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PCAR338963 PCAR_2913
PAST100379
PARS340102
PAER178306
PACN267747 PPA2399
PABY272844
OTSU357244
OIHE221109 OB0445
NWIN323098
NSP387092 NIS_1720
NSP35761 NOCA_4349
NSP103690 ALR7168
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NFAR247156 NFA47060
NEUT335283
NEUR228410
MXAN246197 MXAN_1760
MVAN350058 MVAN_4474
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP189918
MSP164757 MJLS_4212
MSP164756
MSED399549 MSED_1279
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM2851
MMAR444158 MMARC6_0136
MMAR426368
MMAR402880 MMARC5_1543
MMAR394221
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072 MFLA_2581
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348 MAQU_0113
MAER449447
MAEO419665
MACE188937 MA2206
MABS561007
LXYL281090
LWEL386043
LSPH444177 BSPH_1291
LSAK314315
LREU557436
LPNE400673 LPC_0677
LPNE297246 LPP1210
LPNE297245 LPL1216
LPNE272624 LPG1208
LPLA220668 LP_1914
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_1828
LCAS321967
LBRE387344 LVIS_0853
LBOR355277 LBJ_0498
LBOR355276 LBL_2581
LBIF456481 LEPBI_I0068
LBIF355278 LBF_0068
LACI272621
KRAD266940 KRAD_3930
JSP290400 JANN_1331
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274 HAUR_4395
HACI382638
GVIO251221 GLL2855
GTHE420246 GTNG_0846
GKAU235909 GK0958
GFOR411154
FSUC59374
FSP106370
FNUC190304
FNOD381764
FMAG334413
FALN326424 FRAAL2091
ERUM302409
ERUM254945
EFAE226185 EF_1668
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRAD243230 DR_1159
DOLE96561
DNOD246195
DHAF138119 DSY0382
DGEO319795 DGEO_2531
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CRUT413404
CPSY167879
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_0493
CPER195103 CPF_0505
CPER195102 CPE0525
CPEL335992
CNOV386415
CMUR243161
CMIC443906 CMM_1449
CMIC31964 CMS1544
CMET456442 MBOO_0615
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309 DIP1028
CDIF272563
CDES477974
CCUR360105
CCON360104
CCAV227941
CBOT536232 CLM_1260
CBOT515621 CLJ_B1151
CBOT508765
CBOT498213 CLD_2395
CBOT441772 CLI_1191
CBOT441771 CLC_1154
CBOT441770 CLB_1142
CBOT36826 CBO1102
CBLO291272 BPEN_640
CBLO203907
CACE272562
CABO218497
BTUR314724
BSP107806
BPAR257311 BPP1733
BLON206672
BHER314723
BHAL272558
BGAR290434
BBUR224326
BBAC264462 BD0646
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP62928 AZO1997
ASP1667 ARTH_3927
APLE434271
APLE416269
APHA212042
APER272557
AORE350688 CLOS_1035
ANAE240017
AMET293826 AMET_3151
AMAR329726 AM1_5899
AMAR234826
ALAI441768 ACL_0565
AFUL224325
AEHR187272
ACEL351607
ABUT367737 ABU_0816
ABOR393595 ABO_0014
AAUR290340 AAUR_2523
AAEO224324


Organism features enriched in list (features available for 351 out of the 374 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00003807292
Arrangment:Clusters 0.00180321617
Disease:Gastroenteritis 0.0057925313
Disease:None 0.00800094358
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00353591111
Disease:Wide_range_of_infections 0.00353591111
Endospores:No 1.387e-15171211
GC_Content_Range4:0-40 2.225e-15172213
GC_Content_Range4:40-60 0.0000133111224
GC_Content_Range4:60-100 0.000033067145
GC_Content_Range7:0-30 8.191e-84447
GC_Content_Range7:30-40 4.137e-8128166
GC_Content_Range7:50-60 2.377e-741107
GC_Content_Range7:60-70 2.963e-658134
Genome_Size_Range5:0-2 7.560e-15132155
Genome_Size_Range5:2-4 6.502e-10152197
Genome_Size_Range5:4-6 4.166e-2554184
Genome_Size_Range5:6-10 2.007e-61347
Genome_Size_Range9:0-1 7.415e-72727
Genome_Size_Range9:1-2 2.049e-9105128
Genome_Size_Range9:2-3 1.454e-898120
Genome_Size_Range9:4-5 4.284e-63896
Genome_Size_Range9:5-6 2.030e-181688
Genome_Size_Range9:6-8 3.717e-7838
Gram_Stain:Gram_Neg 2.026e-27139333
Gram_Stain:Gram_Pos 2.105e-12125150
Habitat:Multiple 0.000082887178
Habitat:Specialized 8.498e-64653
Habitat:Terrestrial 0.00261781131
Motility:No 1.317e-12126151
Motility:Yes 7.991e-8130267
Optimal_temp.:- 0.0044367141257
Optimal_temp.:30-37 0.00113011718
Oxygen_Req:Aerobic 0.000516094185
Oxygen_Req:Anaerobic 3.759e-783102
Oxygen_Req:Facultative 0.0002422102201
Oxygen_Req:Microaerophilic 0.00662361618
Pathogenic_in:Animal 0.00731313166
Pathogenic_in:Human 0.0019852113213
Pathogenic_in:No 0.0008979153226
Shape:Coccus 9.029e-87082
Shape:Irregular_coccus 0.00015321717
Shape:Rod 5.456e-25151347
Shape:Sphere 0.00070521819
Shape:Spiral 4.879e-63234
Temp._range:Hyperthermophilic 0.00010302223
Temp._range:Mesophilic 0.0000157266473
Temp._range:Thermophilic 0.00060133035



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461740.6757
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001870.6323
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961840.6208
PWY-1269 (CMP-KDO biosynthesis I)3251930.6191
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911820.6185
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491230.6113
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951440.6098
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901800.6070
PWY-5918 (heme biosynthesis I)2721690.5738
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251510.5705
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911370.5704
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861730.5680
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481920.5651
PWY-4041 (γ-glutamyl cycle)2791700.5638
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181470.5617
PWY-5028 (histidine degradation II)1301070.5572
PWY-5913 (TCA cycle variation IV)3011760.5542
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112970.5512
TYRFUMCAT-PWY (tyrosine degradation I)1841310.5480
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96860.5298
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761240.5212
AST-PWY (arginine degradation II (AST pathway))120970.5145
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831260.5134
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391800.5001
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291760.4933
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491490.4917
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491490.4917
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561110.4887
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911260.4882
GLUCONSUPER-PWY (D-gluconate degradation)2291400.4806
KDOSYN-PWY (KDO transfer to lipid IVA I)1801200.4776
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791190.4732
PWY-5148 (acyl-CoA hydrolysis)2271380.4717
GALACTITOLCAT-PWY (galactitol degradation)73670.4694
PWY-46 (putrescine biosynthesis III)1381000.4661
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551460.4554
PWY-3162 (tryptophan degradation V (side chain pathway))94770.4539
GALACTCAT-PWY (D-galactonate degradation)104820.4525
PWY0-981 (taurine degradation IV)106830.4524
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161940.4522
REDCITCYC (TCA cycle variation II)1741140.4510
P601-PWY (D-camphor degradation)95770.4488
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981890.4486
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781130.4306
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135940.4275
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138950.4245
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741790.4232
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001560.4185
P344-PWY (acrylonitrile degradation)2101240.4176
PWY-6087 (4-chlorocatechol degradation)2231280.4108
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261630.4099
PWY0-501 (lipoate biosynthesis and incorporation I)3851800.4090
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221890.4047
DAPLYSINESYN-PWY (lysine biosynthesis I)3421670.4039
PWY0-1182 (trehalose degradation II (trehalase))70590.4012



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG13283   EG11439   EG11354   EG10603   
G72330.9998340.9998450.9999030.998701
EG132830.9999290.9998290.998683
EG114390.9998410.99869
EG113540.998974
EG10603



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PAIRWISE BLAST SCORES:

  G7233   EG13283   EG11439   EG11354   EG10603   
G72330.0f0--3.1e-88-
EG13283-0.0f00--
EG11439-00.0f0--
EG113541.0e-89--0.0f0-
EG10603----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-2121 (EmrAB-TolC multidrug efflux transport system) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.400, average score: 0.573)
  Genes in pathway or complex:
             0.4876 0.3586 EG11009 (tolC) EG11009-MONOMER (TolC outer membrane channel)
   *in cand* 0.9997 0.9987 EG11439 (emrB) EMRB-MONOMER (EmrB multidrug MFS transporter)
   *in cand* 0.9997 0.9990 EG11354 (emrA) EG11354-MONOMER (EmrA Membrane Fusion Protein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9990 0.9987 EG10603 (mprA) EG10603-MONOMER (MprA)
   *in cand* 0.9997 0.9987 EG13283 (emrY) EMRY-MONOMER (EmrY putative multidrug MFS transporter)
   *in cand* 0.9997 0.9987 G7233 (emrK) G7233-MONOMER (EmrK putative membrane fusion protein)

- CPLX0-2161 (EmrKY-TolC putative multidrug efflux transport system) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.400, average score: 0.649)
  Genes in pathway or complex:
             0.4876 0.3586 EG11009 (tolC) EG11009-MONOMER (TolC outer membrane channel)
   *in cand* 0.9997 0.9987 EG13283 (emrY) EMRY-MONOMER (EmrY putative multidrug MFS transporter)
   *in cand* 0.9997 0.9987 G7233 (emrK) G7233-MONOMER (EmrK putative membrane fusion protein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9990 0.9987 EG10603 (mprA) EG10603-MONOMER (MprA)
   *in cand* 0.9997 0.9990 EG11354 (emrA) EG11354-MONOMER (EmrA Membrane Fusion Protein)
   *in cand* 0.9997 0.9987 EG11439 (emrB) EMRB-MONOMER (EmrB multidrug MFS transporter)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10603 EG11354 EG11439 (centered at EG11354)
EG13283 G7233 (centered at G7233)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7233   EG13283   EG11439   EG11354   EG10603   
211/623232/623231/623213/623251/623
AAUR290340:2:Tyes----0
AAVE397945:0:Tyes-001-
ABAC204669:0:Tyes163001629--
ABAU360910:0:Tyes0110305
ABOR393595:0:Tyes----0
ABUT367737:0:Tyes----0
ACAU438753:0:Tyes0110-
ACRY349163:8:Tyes0113350-
ADEH290397:0:Tyes1001-
AFER243159:0:Tyes1250001250-
AHYD196024:0:Tyes1001-
ALAI441768:0:Tyes----0
AMAR329726:9:Tyes----0
AMET293826:0:Tyes----0
AORE350688:0:Tyes----0
ASAL382245:5:Tyes0110-
ASP1667:3:Tyes----0
ASP232721:2:Tyes1001-
ASP62928:0:Tyes----0
ASP62977:0:Tyes01101314
ASP76114:2:Tyes23320
BABO262698:0:Tno0--0-
BAMB339670:3:Tno13900138913901392
BAMB398577:3:Tno14020140114021404
BAMY326423:0:Tyes-192--0
BANT260799:0:Tno--3191-0
BANT261594:2:Tno--3187-0
BANT568206:2:Tyes--1534-0
BANT592021:2:Tno--3363-0
BBAC264462:0:Tyes----0
BBAC360095:0:Tyes8978988980-
BBRO257310:0:Tyes10011490
BCAN483179:1:Tno1001-
BCEN331271:2:Tno10170101610171200
BCEN331272:3:Tyes14550145414551631
BCER226900:1:Tyes--3160-0
BCER288681:0:Tno--3065-0
BCER315749:1:Tyes-20872087-0
BCER405917:1:Tyes-4343069-0
BCER572264:1:Tno--3247-0
BCIC186490:0:Tyes3183173173180
BCLA66692:0:Tyes-688--0
BFRA272559:1:Tyes44000440-
BFRA295405:0:Tno62200622-
BHEN283166:0:Tyes011225-
BJAP224911:0:Fyes57316705057315952
BLIC279010:0:Tyes-0--511
BMAL243160:1:Tno015341534083
BMAL320388:1:Tno019491949090
BMAL320389:1:Tyes878686870
BMEL224914:0:Tno0--0-
BMEL224914:1:Tno-00--
BMEL359391:0:Tno0--0-
BOVI236:0:Tyes0--0-
BOVI236:1:Tyes-00--
BPAR257311:0:Tno----0
BPER257313:0:Tyes2172182182170
BPET94624:0:Tyes1021031031020
BPSE272560:1:Tyes18930018931729
BPSE320372:1:Tno18120181118122015
BPSE320373:1:Tno16670166616671874
BPUM315750:0:Tyes-396396-0
BQUI283165:0:Tyes011174-
BSP36773:0:Tyes----0
BSP36773:2:Tyes1444001444-
BSP376:0:Tyes31412611261131410
BSUB:0:Tyes-0--454
BSUI204722:1:Tyes1001-
BSUI470137:1:Tno1001-
BTHA271848:1:Tno24970024972333
BTHE226186:0:Tyes0--1583-
BTHU281309:1:Tno--3053-0
BTHU412694:1:Tno--2812-0
BTRI382640:1:Tyes011402-
BVIE269482:7:Tyes14000139914001546
BWEI315730:4:Tyes--3063-0
BXEN266265:1:Tyes39200392-
CAULO:0:Tyes0110-
CBEI290402:0:Tyes-10121012-0
CBLO291272:0:Tno----0
CBOT36826:1:Tno----0
CBOT441770:0:Tyes----0
CBOT441771:0:Tno----0
CBOT441772:1:Tno----0
CBOT498213:1:Tno----0
CBOT515621:2:Tyes----0
CBOT536232:0:Tno----0
CBUR227377:1:Tyes1001-
CBUR360115:1:Tno0110-
CBUR434922:2:Tno1001-
CCHL340177:0:Tyes1001-
CDIP257309:0:Tyes----0
CHYD246194:0:Tyes-1700--0
CKLU431943:1:Tyes-00-1923
CMET456442:0:Tyes----0
CMIC31964:2:Tyes----0
CMIC443906:2:Tyes----0
CPER195102:1:Tyes----0
CPER195103:0:Tno----0
CPER289380:3:Tyes----0
CPRO264201:0:Fyes1001-
CSAL290398:0:Tyes0110-
CSP501479:4:Fyes0110-
CSP78:2:Tyes0110-
CTEP194439:0:Tyes-001-
CVIO243365:0:Tyes10013
DGEO319795:0:Tyes----0
DHAF138119:0:Tyes----0
DPSY177439:2:Tyes0110-
DRAD243230:3:Tyes----0
DRED349161:0:Tyes-00-296
ECAR218491:0:Tyes12210
ECOL199310:0:Tno0335335334333
ECOL316407:0:Tno0301301300299
ECOL331111:6:Tno0297297296295
ECOL362663:0:Tno0261261260259
ECOL364106:1:Tno0343343342341
ECOL405955:2:Tyes1001338
ECOL409438:6:Tyes0284284283282
ECOL413997:0:Tno0271271270269
ECOL439855:4:Tno0276276275274
ECOL469008:0:Tno27827927901
ECOL481805:0:Tno28728828801
ECOL585034:0:Tno0345345344343
ECOL585035:0:Tno0373373372371
ECOL585055:0:Tno0292292291290
ECOL585056:2:Tno0320320319318
ECOL585057:0:Tno0369369368366
ECOL585397:0:Tno0320320319318
ECOL83334:0:Tno0313313312311
ECOLI:0:Tno10323322321
ECOO157:0:Tno0313313312311
EFAE226185:3:Tyes----0
EFER585054:1:Tyes10012
ELIT314225:0:Tyes1001-
ESP42895:1:Tyes12210
FALN326424:0:Tyes-0---
FJOH376686:0:Tyes0204335680-
FPHI484022:1:Tyes0110-
FRANT:0:Tno1001-
FSP1855:0:Tyes-20273662-0
FTUL351581:0:Tno0110-
FTUL393011:0:Tno0110-
FTUL393115:0:Tyes1001-
FTUL401614:0:Tyes1001-
FTUL418136:0:Tno0110-
FTUL458234:0:Tno0110-
GBET391165:0:Tyes1001-
GKAU235909:1:Tyes----0
GMET269799:1:Tyes10012081
GOXY290633:5:Tyes1001-
GSUL243231:0:Tyes1001-
GTHE420246:1:Tyes----0
GURA351605:0:Tyes0110813
GVIO251221:0:Tyes----0
HARS204773:0:Tyes23320
HAUR316274:2:Tyes----0
HCHE349521:0:Tyes-00--
HINF281310:0:Tyes1001-
HINF374930:0:Tyes0--0-
HINF71421:0:Tno1001-
HMOD498761:0:Tyes-00--
JSP290400:1:Tyes----0
JSP375286:0:Tyes0110826
KPNE272620:2:Tyes12210
KRAD266940:2:Fyes----0
LBIF355278:2:Tyes----0
LBIF456481:2:Tno----0
LBOR355276:1:Tyes----0
LBOR355277:1:Tno----0
LBRE387344:2:Tyes----0
LCHO395495:0:Tyes----0
LPLA220668:0:Tyes----0
LPNE272624:0:Tno----0
LPNE297245:1:Fno----0
LPNE297246:1:Fyes----0
LPNE400673:0:Tno----0
LSPH444177:1:Tyes----0
MACE188937:0:Tyes----0
MAQU351348:2:Tyes----0
MCAP243233:0:Tyes0110-
MEXT419610:0:Tyes1001-
MFLA265072:0:Tyes----0
MLOT266835:2:Tyes38413842384238410
MMAG342108:0:Tyes0110-
MMAR402880:1:Tyes----0
MMAR444158:0:Tyes----0
MMAZ192952:0:Tyes----0
MSED399549:0:Tyes----0
MSME246196:0:Tyes-2544--0
MSP164757:0:Tno----0
MSP266779:3:Tyes1001-
MSP400668:0:Tyes1909001909-
MSP409:2:Tyes15211551152015210
MTHE264732:0:Tyes-00--
MVAN350058:0:Tyes-0---
MXAN246197:0:Tyes----0
NARO279238:0:Tyes1001-
NFAR247156:2:Tyes-0---
NGON242231:0:Tyes1001-
NHAM323097:2:Tyes1001-
NMEN122586:0:Tno0110-
NMEN122587:0:Tyes1001-
NMEN272831:0:Tno1001-
NMEN374833:0:Tno1001-
NSP103690:5:Tyes----0
NSP35761:1:Tyes-0---
NSP387092:0:Tyes--0--
OANT439375:3:Tyes----0
OANT439375:4:Tyes0110-
OCAR504832:0:Tyes0110-
OIHE221109:0:Tyes----0
PACN267747:0:Tyes----0
PAER208963:0:Tyes23320
PAER208964:0:Tno23320
PARC259536:0:Tyes0--0-
PATL342610:0:Tyes0--0-
PCAR338963:0:Tyes----0
PCRY335284:1:Tyes0--0-
PDIS435591:0:Tyes0--0-
PENT384676:0:Tyes1001-
PFLU205922:0:Tyes10013
PFLU216595:1:Tyes10013
PFLU220664:0:Tyes10013
PING357804:0:Tyes----0
PINT246198:0:Tyes----0
PLUM243265:0:Fyes10012
PLUT319225:0:Tyes-00--
PMEN399739:0:Tyes12571258125812570
PNAP365044:8:Tyes0110-
PPRO298386:1:Tyes0110-
PPRO298386:2:Tyes----0
PPUT160488:0:Tno1001-
PPUT351746:0:Tyes0110-
PPUT76869:0:Tno0110-
PRUM264731:0:Tyes---0-
PSP296591:2:Tyes10361035103510360
PSP56811:2:Tyes0--0-
PSTU379731:0:Tyes0--0-
PSYR205918:0:Tyes12210
PSYR223283:2:Tyes10012
PTHE370438:0:Tyes-00--
PTOR263820:0:Tyes----0
RAKA293614:0:Fyes11800118-
RBEL336407:0:Tyes-171-0-
RCAN293613:0:Fyes12000120-
RCON272944:0:Tno13100131-
RDEN375451:4:Tyes----0
RETL347834:5:Tyes33433050305033430
REUT264198:1:Tyes01---
REUT264198:2:Tyes----0
REUT264198:3:Tyes--10-
REUT381666:1:Tyes----0
REUT381666:2:Tyes0110-
RFEL315456:2:Tyes081810-
RFER338969:1:Tyes0110-
RLEG216596:6:Tyes39033502350239030
RMAS416276:1:Tyes920092-
RMET266264:1:Tyes684--6840
RMET266264:2:Tyes-00--
RPAL258594:0:Tyes0110-
RPAL316055:0:Tyes1887110-
RPAL316056:0:Tyes1688003111-
RPAL316057:0:Tyes6496486486490
RPAL316058:0:Tyes1790179117910-
RPOM246200:1:Tyes----0
RPRO272947:0:Tyes-00--
RRIC392021:0:Fno-00--
RRIC452659:0:Tyes-00--
RRUB269796:1:Tyes10013
RSAL288705:0:Tyes----0
RSOL267608:1:Tyes7227217217220
RSP101510:3:Fyes-0---
RSPH272943:4:Tyes0110-
RSPH349101:2:Tno0110-
RSPH349102:5:Tyes1001-
RTYP257363:0:Tno-00--
RXYL266117:0:Tyes----0
SACI330779:0:Tyes----0
SACI56780:0:Tyes----0
SAGA205921:0:Tno----0
SAGA208435:0:Tno----0
SAGA211110:0:Tyes----0
SALA317655:1:Tyes0110-
SAUR158878:1:Tno----0
SAUR158879:1:Tno----0
SAUR196620:0:Tno----0
SAUR273036:0:Tno----0
SAUR282458:0:Tno----0
SAUR282459:0:Tno----0
SAUR359786:1:Tno----0
SAUR359787:1:Tno----0
SAUR367830:3:Tno----0
SAUR418127:0:Tyes----0
SAUR426430:0:Tno----0
SAUR93061:0:Fno----0
SAUR93062:1:Tno----0
SAVE227882:1:Fyes----0
SBAL399599:3:Tyes26212620262026210
SBAL402882:1:Tno25212520252025210
SBOY300268:1:Tyes0412412413414
SCO:2:Fyes----0
SDEG203122:0:Tyes-00--
SDEN318161:0:Tyes----0
SDYS300267:1:Tyes100293292
SELO269084:0:Tyes----0
SENT209261:0:Tno12210
SENT220341:0:Tno12210
SENT295319:0:Tno12210
SENT321314:2:Tno12210
SENT454169:2:Tno12210
SEPI176279:1:Tyes----0
SEPI176280:0:Tno----0
SERY405948:0:Tyes-0--5565
SFLE198214:0:Tyes02712710270
SFLE373384:0:Tno03753750376
SFUM335543:0:Tyes0110-
SGLO343509:3:Tyes----0
SGOR29390:0:Tyes----0
SHAE279808:0:Tyes--153-0
SHAL458817:0:Tyes1723172217220-
SHIGELLA:0:Tno02872870286
SLOI323850:0:Tyes01912191219131843
SMED366394:3:Tyes18931892189218930
SMEL266834:2:Tyes16711670167016710
SMUT210007:0:Tyes----0
SONE211586:1:Tyes011-1042
SPEA398579:0:Tno1001-
SPRO399741:1:Tyes23320
SSAP342451:2:Tyes----0
SSED425104:0:Tyes3862003862-
SSOL273057:0:Tyes----0
SSON300269:1:Tyes0352352351350
SSP321327:0:Tyes----0
SSP644076:3:Fyes0--0-
SSP94122:1:Tyes1001648
SSUI391295:0:Tyes----0
SSUI391296:0:Tyes----0
STHE292459:0:Tyes----0
STYP99287:1:Tyes12210
TACI273075:0:Tyes----0
TDEN292415:0:Tyes----0
TFUS269800:0:Tyes----0
TLET416591:0:Tyes----0
TMAR243274:0:Tyes----0
TPET390874:0:Tno----0
TPSE340099:0:Tyes----0
TSP28240:0:Tyes----0
TTUR377629:0:Tyes3033043043030
UMET351160:0:Tyes----0
VCHO:0:Tyes0110-
VCHO345073:1:Tno0110-
VFIS312309:1:Tyes-4141-0
VFIS312309:2:Tyes0--0-
VPAR223926:0:Tyes0110-
VPAR223926:1:Tyes----0
VVUL196600:1:Tyes1001-
VVUL216895:0:Tno1001-
XAUT78245:1:Tyes0110-
XAXO190486:0:Tyes011010
XCAM190485:0:Tyes011012
XCAM314565:0:Tno121111120
XCAM316273:0:Tno011012
XCAM487884:0:Tno121111120
XFAS160492:2:Tno----0
XFAS183190:1:Tyes----0
XFAS405440:0:Tno----0
XORY291331:0:Tno0110352
XORY342109:0:Tyes0110344
XORY360094:0:Tno14351433143314350
YENT393305:1:Tyes23320
YPES187410:5:Tno10012
YPES214092:3:Tno12210
YPES349746:2:Tno23320
YPES360102:3:Tyes12210
YPES377628:2:Tno10012
YPES386656:2:Tno12210
YPSE273123:2:Tno10012
YPSE349747:2:Tno12210
ZMOB264203:0:Tyes0110-



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