CANDIDATE ID: 620

CANDIDATE ID: 620

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9923800e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7423 (ispD) (b2747)
   Products of gene:
     - G7423-MONOMER (4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer)
     - CPLX0-234 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
       Reactions:
        2-C-methyl-D-erythritol-4-phosphate + CTP + H+  =  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + diphosphate
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG11816 (ispF) (b2746)
   Products of gene:
     - EG11816-MONOMER (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer)
     - CPLX0-721 (2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase)
       Reactions:
        2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol  ->  CMP + 2-C-methyl-D-erythritol-2,4-cyclodiphosphate
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG11619 (mfd) (b1114)
   Products of gene:
     - EG11619-MONOMER (transcription-repair coupling factor)

- EG11311 (dusB) (b3260)
   Products of gene:
     - EG11311-MONOMER (tRNA dihydrouridine synthase)
       Reactions:
        a tRNA  ->  tRNA containing 5,6-dihydrouridine

- EG10572 (mazG) (b2781)
   Products of gene:
     - EG10572-MONOMER (nucleoside triphosphate pyrophosphohydrolase)
     - CPLX0-7692 (nucleoside triphosphate pyrophosphohydrolase)
       Reactions:
        a nucleoside triphosphate + H2O  ->  a nucleoside monophosphate + diphosphate



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 347
Effective number of orgs (counting one per cluster within 468 clusters): 258

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM45
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TFUS269800 ncbi Thermobifida fusca YX4
TERY203124 ncbi Trichodesmium erythraeum IMS1014
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STRO369723 ncbi Salinispora tropica CNB-4404
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-35
SSP64471 ncbi Synechococcus sp. CC93114
SSP644076 Silicibacter sp. TrichCH4B5
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)5
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSP292414 ncbi Ruegeria sp. TM10405
SSP1148 ncbi Synechocystis sp. PCC 68035
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SELO269084 ncbi Synechococcus elongatus PCC 63015
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SARE391037 ncbi Salinispora arenicola CNS-2055
SALA317655 ncbi Sphingopyxis alaskensis RB22564
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332095
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 425
RDEN375451 ncbi Roseobacter denitrificans OCh 1145
RALB246199 Ruminococcus albus 84
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.5
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PMAR167540 Prochlorococcus marinus pastoris MED4ax4
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PINT246198 Prevotella intermedia 174
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PGIN242619 ncbi Porphyromonas gingivalis W834
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
PACN267747 ncbi Propionibacterium acnes KPA1712024
OCAR504832 ncbi Oligotropha carboxidovorans OM55
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2555
NSP35761 Nocardioides sp.5
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X145
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NFAR247156 ncbi Nocardia farcinica IFM 101524
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL15
MSP266779 ncbi Chelativorans sp. BNC15
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS105
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA15
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LINN272626 ncbi Listeria innocua Clip112624
LCHO395495 ncbi Leptothrix cholodnii SP-64
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS15
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HNEP81032 Hyphomonas neptunium5
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74215
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GOXY290633 ncbi Gluconobacter oxydans 621H5
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FSP1855 Frankia sp. EAN1pec4
FSP106370 ncbi Frankia sp. CcI34
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
FALN326424 ncbi Frankia alni ACN14a4
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DSP255470 ncbi Dehalococcoides sp. CBDB14
DSP216389 ncbi Dehalococcoides sp. BAV14
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DRED349161 ncbi Desulfotomaculum reducens MI-15
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd35
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E884
CTEP194439 ncbi Chlorobium tepidum TLS4
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT5
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CKLU431943 ncbi Clostridium kluyveri DSM 5555
CJAP155077 Cellvibrio japonicus5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334064
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CEFF196164 ncbi Corynebacterium efficiens YS-3144
CDIF272563 ncbi Clostridium difficile 6304
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
CCHL340177 ncbi Chlorobium chlorochromatii CaD34
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CAULO ncbi Caulobacter crescentus CB155
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54824
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1685
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHEN283166 ncbi Bartonella henselae Houston-14
BHAL272558 ncbi Bacillus halodurans C-1255
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AMAR329726 ncbi Acaryochloris marina MBIC110175
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-55
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G7423   EG11816   EG11619   EG11311   EG10572   
ZMOB264203 ZMO1128ZMO1128ZMO1646ZMO1127ZMO1095
YPSE349747 YPSIP31758_3299YPSIP31758_3298YPSIP31758_1598YPSIP31758_0386YPSIP31758_3318
YPSE273123 YPTB0770YPTB0771YPTB2443YPTB3576YPTB0753
YPES386656 YPDSF_2999YPDSF_3000YPDSF_1824YPDSF_0261YPDSF_2981
YPES377628 YPN_0732YPN_0733YPN_2007YPN_3517YPN_0714
YPES360102 YPA_2782YPA_2783YPA_1900YPA_3667YPA_2876
YPES349746 YPANGOLA_A0964YPANGOLA_A0963YPANGOLA_A2864YPANGOLA_A1211YPANGOLA_A0982
YPES214092 YPO3361YPO3360YPO1625YPO3655YPO3378
YPES187410 Y0828Y0829Y1784Y0213Y0812
YENT393305 YE0769YE0770YE1709YE3816YE0745
XORY360094 XOOORF_1707XOOORF_1708XOOORF_1413XOOORF_1119XOOORF_3214
XORY342109 XOO2812XOO2811XOO1373XOO3567XOO1693
XORY291331 XOO2961XOO2960XOO1472XOO3787XOO1790
XFAS405440 XFASM12_0618XFASM12_0619XFASM12_0039XFASM12_0158
XFAS183190 PD_0545PD_0546PD_0033PD_0152
XFAS160492 XF1293XF1294XF0045XF0186
XCAM487884 XCC-B100_2557XCC-B100_2556XCC-B100_1463XCC-B100_3590XCC-B100_1272
XCAM316273 XCAORF_1938XCAORF_1939XCAORF_3058XCAORF_0941XCAORF_3260
XCAM314565 XC_2529XC_2528XC_1416XC_3469XC_1228
XCAM190485 XCC1702XCC1703XCC2698XCC0763XCC2881
XAXO190486 XAC1721XAC1722XAC2858XAC0816XAC3065
XAUT78245 XAUT_4402XAUT_4402XAUT_4262XAUT_4401XAUT_4391
VVUL216895 VV1_1582VV1_1583VV1_2078VV1_1232VV1_1577
VVUL196600 VV2816VV2814VV2365VV3138VV2820
VPAR223926 VP2559VP2558VP0975VP2884VP2563
VFIS312309 VF2073VF2072VFA0459VF2390VF2078
VEIS391735 VEIS_4360VEIS_4361VEIS_4359VEIS_3027
VCHO345073 VC0395_A0056VC0395_A0057VC0395_A1476VC0395_A2686VC0395_A2028
VCHO VC0528VC0529VC1886VC0291VC2450
TTEN273068 TTE2322TTE2320TTE2565TTE0344TTE2454
TSP1755 TETH514_0839TETH514_0841TETH514_0593TETH514_0273TETH514_0686
TROS309801 TRD_1724TRD_1723TRD_0670TRD_0852
TPSE340099 TETH39_0346TETH39_0348TETH39_0169TETH39_1937TETH39_0248
TFUS269800 TFU_2539TFU_2906TFU_0424TFU_0426
TERY203124 TERY_0609TERY_4716TERY_1325TERY_5034
TELO197221 TLR0605TLR2035TLL0991TLR0809
TDEN292415 TBD_1003TBD_1004TBD_1656TBD_2456
SWOL335541 SWOL_2361SWOL_2360SWOL_0073SWOL_0110SWOL_0082
STYP99287 STM2930STM2929STM1216STM3384STM2954
STRO369723 STROP_4261STROP_4260STROP_0884STROP_0886
STHE292459 STH3123STH3122STH3235STH3158STH3231
SSP94122 SHEWANA3_1118SHEWANA3_1119SHEWANA3_2289SHEWANA3_0399SHEWANA3_1114
SSP64471 GSYN2274GSYN0826GSYN0623GSYN3015
SSP644076 SCH4B_2279SCH4B_2279SCH4B_2294SCH4B_2280SCH4B_4323
SSP321332 CYB_2706CYB_0783CYB_1207CYB_1632CYB_2901
SSP321327 CYA_1505CYA_0267CYA_1763CYA_1650CYA_2009
SSP292414 TM1040_1364TM1040_1364TM1040_1349TM1040_1363TM1040_0936
SSP1148 SLR0951SLR1542SLL0377SLR0644SLL1005
SSON300269 SSO_2895SSO_2894SSO_1134SSO_3401SSO_2938
SSED425104 SSED_1292SSED_1293SSED_2833SSED_4118SSED_1288
SRUB309807 SRU_1652SRU_1651SRU_2519SRU_1112
SPRO399741 SPRO_0826SPRO_0827SPRO_1998SPRO_4423SPRO_0793
SPEA398579 SPEA_1187SPEA_1188SPEA_1543SPEA_0390SPEA_1183
SONE211586 SO_3438SO_3437SO_2255SO_0394SO_3442
SMEL266834 SMC01040SMC01040SMC04450SMC01041SMC01051
SMED366394 SMED_1087SMED_1087SMED_1399SMED_1088SMED_1097
SLOI323850 SHEW_1207SHEW_1208SHEW_1630SHEW_0330SHEW_1203
SLAC55218 SL1157_2681SL1157_2681SL1157_2698SL1157_2682SL1157_2622
SHIGELLA YGBPYGBBMFDYHDGMAZG
SHAL458817 SHAL_1224SHAL_1225SHAL_1613SHAL_3901SHAL_1220
SGLO343509 SG0526SG0527SG1075SG0511
SFUM335543 SFUM_1637SFUM_1636SFUM_3479SFUM_1813SFUM_2161
SFLE373384 SFV_2751SFV_2752SFV_1134SFV_3285SFV_2674
SFLE198214 AAN44259.1AAN44258.1AAN42736.1AAN44762.1AAN44284.1
SERY405948 SACE_0439SACE_0440SACE_0826SACE_7086SACE_0834
SENT454169 SEHA_C3120SEHA_C3119SEHA_C1330SEHA_C3682SEHA_C3151
SENT321314 SCH_2862SCH_2861SCH_1166SCH_3322SCH_2888
SENT295319 SPA2786SPA2785SPA1634SPA3251SPA2811
SENT220341 STY3055STY3054STY1256STY3564STY3083
SENT209261 T2831T2830T1704T3299T2855
SELO269084 SYC0848_DSYC0380_DSYC0227_CSYC1229_DSYC2479_D
SDYS300267 SDY_2946SDY_2945SDY_2036SDY_3437SDY_2998
SDEN318161 SDEN_1198SDEN_1199SDEN_1674SDEN_0445SDEN_1194
SDEG203122 SDE_1247SDE_1248SDE_1796SDE_0808SDE_2237
SCO SCO4233SCO3109SCO2497SCO3100
SBOY300268 SBO_2773SBO_2774SBO_1947SBO_3254SBO_2662
SBAL402882 SHEW185_3134SHEW185_3133SHEW185_2395SHEW185_3964SHEW185_3138
SBAL399599 SBAL195_3277SBAL195_3276SBAL195_2511SBAL195_4080SBAL195_3281
SAVE227882 SAV3969SAV3549SAV5649SAV3537
SARE391037 SARE_4691SARE_4690SARE_0829SARE_3809SARE_0831
SALA317655 SALA_1278SALA_1653SALA_1277SALA_1270
SACI56780 SYN_01401SYN_01400SYN_02759SYN_02436SYN_00041
RSPH349102 RSPH17025_1485RSPH17025_1484RSPH17025_1500RSPH17025_1486RSPH17025_1109
RSPH349101 RSPH17029_1459RSPH17029_1460RSPH17029_1443RSPH17029_1458RSPH17029_1556
RSPH272943 RSP_2835RSP_6071RSP_2850RSP_2836RSP_2912
RSP101510 RHA1_RO04460RHA1_RO04461RHA1_RO05760RHA1_RO05761
RSOL267608 RSC1643RSC1644RSC1642RSC0506
RSAL288705 RSAL33209_0409RSAL33209_0410RSAL33209_2974RSAL33209_2908RSAL33209_0328
RRUB269796 RRU_A1674RRU_A1674RRU_A1726RRU_A1676RRU_A1690
RPOM246200 SPO_2090SPO_2074SPO_2089SPO_2469
RPAL316058 RPB_2885RPB_2885RPB_2850RPB_2884RPB_2710
RPAL316057 RPD_2587RPD_2587RPD_2622RPD_2588RPD_2752
RPAL316056 RPC_2575RPC_2575RPC_2610RPC_2576RPC_2752
RPAL316055 RPE_2755RPE_2755RPE_2790RPE_2756RPE_2885
RPAL258594 RPA2590RPA2590RPA2663RPA2591RPA2811
RMET266264 RMET_1954RMET_1953RMET_1955RMET_0429
RLEG216596 RL2254RL2254RL2386RL2255RL2286
RFER338969 RFER_1332RFER_1332RFER_1331RFER_1580
REUT381666 H16_A1456H16_A1457H16_A1455H16_A0503
REUT264198 REUT_A1361REUT_A1362REUT_A1360REUT_A0489
RETL347834 RHE_CH01945RHE_CH01945RHE_CH02095RHE_CH01946RHE_CH01956
RDEN375451 RD1_2766RD1_2767RD1_2746RD1_2765RD1_3133
RALB246199 GRAORF_1929GRAORF_2360GRAORF_1921GRAORF_4468
PTHE370438 PTH_0289PTH_0290PTH_0259PTH_0120
PSYR223283 PSPTO_1556PSPTO_1560PSPTO_2101PSPTO_4864PSPTO_1695
PSYR205918 PSYR_1365PSYR_1369PSYR_1896PSYR_4404PSYR_3694
PSTU379731 PST_1559PST_1566PST_2657PST_3277PST_2668
PSP56811 PSYCPRWF_1662PSYCPRWF_0962PSYCPRWF_1636PSYCPRWF_0953PSYCPRWF_0276
PSP312153 PNUC_0930PNUC_0931PNUC_0929PNUC_1875
PSP296591 BPRO_2716BPRO_2715BPRO_2717BPRO_1130
PPUT76869 PPUTGB1_1168PPUTGB1_1172PPUTGB1_1689PPUTGB1_4873PPUTGB1_1258
PPUT351746 PPUT_4163PPUT_4159PPUT_3594PPUT_4695PPUT_4061
PPUT160488 PP_1614PP_1618PP_2148PP_4820PP_1657
PPRO298386 PBPRA3077PBPRA3076PBPRA2392PBPRA3410PBPRA3081
PNAP365044 PNAP_2549PNAP_2548PNAP_2550PNAP_3360
PMUL272843 PM1608PM1609PM1041PM1087PM1285
PMEN399739 PMEN_3031PMEN_3026PMEN_1593PMEN_0710PMEN_1736
PMAR167540 PMM0454PMM1280PMM1009PMM1684
PLUT319225 PLUT_1314PLUT_1598PLUT_0276PLUT_2027
PLUM243265 PLU0713PLU0714PLU2815PLU4088PLU0911
PINT246198 PIN_A0210PIN_A0178PIN_A0422PIN_A1795
PING357804 PING_0672PING_0673PING_2204PING_3215PING_0665
PHAL326442 PSHAA0684PSHAA0685PSHAA1836PSHAA0347PSHAA0740
PGIN242619 PG_1434PG_0028PG_0021PG_1703
PFLU220664 PFL_1198PFL_1202PFL_1954PFL_0668PFL_4445
PFLU216595 PFLU1293PFLU1297PFLU1565PFLU0614PFLU4504
PFLU205922 PFL_1123PFL_1127PFL_3866PFL_0615PFL_4216
PENT384676 PSEEN4198PSEEN4194PSEEN3715PSEEN4861PSEEN1365
PCRY335284 PCRYO_1868PCRYO_1149PCRYO_1664PCRYO_1078PCRYO_0121
PCAR338963 PCAR_0103PCAR_0102PCAR_0091PCAR_1992PCAR_1432
PATL342610 PATL_3857PATL_3858PATL_1725PATL_0270PATL_3706
PARC259536 PSYC_1634PSYC_1243PSYC_1484PSYC_1300PSYC_0112
PAER208964 PA3633PA3627PA3002PA4852PA0935
PAER208963 PA14_17340PA14_17420PA14_25230PA14_64180PA14_52160
PACN267747 PPA0353PPA0354PPA0541PPA0543
OCAR504832 OCAR_6093OCAR_6093OCAR_6210OCAR_6094OCAR_6102
OANT439375 OANT_2069OANT_2069OANT_3640OANT_2070OANT_2150
NWIN323098 NWI_1442NWI_1442NWI_1513NWI_1443NWI_1452
NSP35761 NOCA_4038NOCA_4024NOCA_0924NOCA_1942NOCA_0926
NSP103690 ALL5167ALR3883ALL1227ALR0512
NOCE323261 NOC_0854NOC_0855NOC_1642NOC_0869
NMUL323848 NMUL_A2127NMUL_A2126NMUL_A0639NMUL_A0131
NMEN374833 NMCC_1418NMCC_1417NMCC_1194NMCC_1327
NMEN272831 NMC1442NMC1441NMC1214NMC1354
NMEN122587 NMA1713NMA1712NMA1491NMA1633
NMEN122586 NMB_1513NMB_1512NMB_1281NMB_1421
NHAM323097 NHAM_1834NHAM_1834NHAM_2053NHAM_1835NHAM_1845
NGON242231 NGO0972NGO0971NGO0623NGO0151
NFAR247156 NFA4360NFA48750NFA6060NFA48740
NEUT335283 NEUT_1525NEUT_1300NEUT_0129NEUT_1208
NEUR228410 NE1412NE1402NE0008NE0874
NARO279238 SARO_1925SARO_1925SARO_1982SARO_1926SARO_1933
MTHE264732 MOTH_2487MOTH_2486MOTH_0081MOTH_0147MOTH_0084
MSUC221988 MS2275MS2274MS0216MS0532MS0351
MSP409 M446_5927M446_5927M446_6308M446_5928M446_5947
MSP400668 MMWYL1_1301MMWYL1_1302MMWYL1_1709MMWYL1_2985MMWYL1_1254
MSP266779 MESO_1621MESO_1621MESO_1702MESO_1620MESO_1611
MSP189918 MKMS_4825MKMS_4824MKMS_4331MKMS_4330
MSP164757 MJLS_5125MJLS_5124MJLS_4624MJLS_4623
MSP164756 MMCS_4739MMCS_4738MMCS_4245MMCS_4244
MSME246196 MSMEG_6076MSMEG_6075MSMEG_5423MSMEG_5422
MPET420662 MPE_A1570MPE_A1571MPE_A1569MPE_A0486
MMAR394221 MMAR10_1439MMAR10_1439MMAR10_1485MMAR10_1440MMAR10_1450
MMAG342108 AMB2363AMB2363AMB2465AMB2365AMB2392
MLOT266835 MLL0395MLL0395MLL0827MLR0396MLL0404
MFLA265072 MFLA_1116MFLA_1117MFLA_1748MFLA_0351
MEXT419610 MEXT_2817MEXT_2817MEXT_4163MEXT_2818MEXT_3913
MCAP243233 MCA_2517MCA_2518MCA_1864MCA_1745MCA_0046
MAQU351348 MAQU_0923MAQU_0924MAQU_1933MAQU_3448MAQU_2237
LXYL281090 LXX18250LXX18250LXX08490LXX17260
LSPH444177 BSPH_4646BSPH_4645BSPH_0075BSPH_0100BSPH_0078
LMON265669 LMOF2365_0247LMOF2365_0248LMOF2365_0225LMOF2365_0239
LMON169963 LMO0235LMO0236LMO0214LMO0227
LINN272626 LIN0267LIN0268LIN0246LIN0259
LCHO395495 LCHO_2295LCHO_2293LCHO_2006LCHO_0534
KRAD266940 KRAD_0899KRAD_0900KRAD_1067KRAD_1070
KPNE272620 GKPORF_B2440GKPORF_B2439GKPORF_B0027GKPORF_B3008GKPORF_B2459
JSP375286 MMA_1409MMA_1410MMA_1408MMA_0306
JSP290400 JANN_2235JANN_2235JANN_2322JANN_2236JANN_2344
ILOI283942 IL0752IL0751IL1520IL2288IL0803
HSOM228400 HSM_0505HSM_0503HSM_1578HSM_1609HSM_1055
HSOM205914 HS_1496HS_1498HS_1161HS_0565HS_1122
HNEP81032 HNE_2014HNE_2014HNE_1985HNE_2013HNE_2004
HMOD498761 HM1_1354HM1_1354HM1_0721HM1_0661HM1_0717
HINF71421 HI_0672HI_0671HI_1258HI_0979HI_0460
HINF374930 CGSHIEE_08815CGSHIEE_08820CGSHIEE_04040CGSHIEE_07070CGSHIEE_00690
HINF281310 NTHI0794NTHI0793NTHI1906NTHI1151NTHI0591
HHAL349124 HHAL_1435HHAL_1434HHAL_1257HHAL_0129
HDUC233412 HD_1329HD_1328HD_0975HD_0448HD_1468
HCHE349521 HCH_01869HCH_01870HCH_02683HCH_06009HCH_01808
HARS204773 HEAR1912HEAR1911HEAR1914HEAR0253
GVIO251221 GLR2791GLR3547GLL3837GLL1047GLL2594
GURA351605 GURA_4163GURA_4164GURA_0140GURA_0914GURA_3259
GTHE420246 GTNG_0081GTNG_0082GTNG_0048GTNG_0073GTNG_0051
GSUL243231 GSU_3368GSU_3367GSU_0017GSU_1005GSU_1174
GOXY290633 GOX1669GOX1669GOX0055GOX0469GOX1443
GMET269799 GMET_0060GMET_0059GMET_3547GMET_2561GMET_2399
GKAU235909 GK0081GK0082GK0048GK0073GK0051
GBET391165 GBCGDNIH1_1019GBCGDNIH1_1019GBCGDNIH1_0836GBCGDNIH1_1228GBCGDNIH1_1126
FTUL458234 FTA_1609FTA_0882FTA_0967FTA_1028
FTUL418136 FTW_1530FTW_1161FTW_1085FTW_1025
FTUL401614 FTN_0623FTN_1110FTN_1039FTN_0987
FTUL393115 FTF0711FTF1128FTF0644CFTF0519
FTUL393011 FTH_1475FTH_0823FTH_0897FTH_0954
FTUL351581 FTL_1525FTL_0833FTL_0917FTL_0975
FSP1855 FRANEAN1_0363FRANEAN1_0364FRANEAN1_0803FRANEAN1_0805
FSP106370 FRANCCI3_4254FRANCCI3_4253FRANCCI3_3926FRANCCI3_3928
FRANT ISPDISPFMFDFT.0520
FPHI484022 FPHI_0219FPHI_1496FPHI_1551FPHI_1896
FALN326424 FRAAL6524FRAAL6523FRAAL6237FRAAL6235
ESP42895 ENT638_3218ENT638_3217ENT638_1629ENT638_3699ENT638_3235
ELIT314225 ELI_06290ELI_05115ELI_06285ELI_06250
EFER585054 EFER_0321EFER_0322EFER_1278EFER_3239EFER_0283
ECOO157 YGBPYGBBMFDYHDGMAZG
ECOL83334 ECS3601ECS3600ECS1492ECS4132ECS3641
ECOL585397 ECED1_3203ECED1_3202ECED1_1257ECED1_3919ECED1_3234
ECOL585057 ECIAI39_2936ECIAI39_2935ECIAI39_2046ECIAI39_3760ECIAI39_3200
ECOL585056 ECUMN_3071ECUMN_3070ECUMN_1292ECUMN_3734ECUMN_3112
ECOL585055 EC55989_3019EC55989_3018EC55989_1226EC55989_3674EC55989_3056
ECOL585035 ECS88_3017ECS88_3016ECS88_1128ECS88_3645ECS88_3049
ECOL585034 ECIAI1_2848ECIAI1_2847ECIAI1_1151ECIAI1_3403ECIAI1_2889
ECOL481805 ECOLC_0965ECOLC_0966ECOLC_2487ECOLC_0446ECOLC_0931
ECOL469008 ECBD_0977ECBD_0978ECBD_2487ECBD_0485ECBD_0948
ECOL439855 ECSMS35_2872ECSMS35_2871ECSMS35_2012ECSMS35_3555ECSMS35_2919
ECOL413997 ECB_02597ECB_02596ECB_01110ECB_03118ECB_02626
ECOL409438 ECSE_2999ECSE_2998ECSE_1179ECSE_3541ECSE_3039
ECOL405955 APECO1_3776APECO1_3777APECO1_195APECO1_3178APECO1_3749
ECOL364106 UTI89_C3118UTI89_C3117UTI89_C1242UTI89_C3702UTI89_C3150
ECOL362663 ECP_2729ECP_2728ECP_1106ECP_3353ECP_2762
ECOL331111 ECE24377A_3048ECE24377A_3047ECE24377A_1236ECE24377A_3745ECE24377A_3085
ECOL316407 ECK2742:JW2717:B2747ECK2741:JW2716:B2746ECK1100:JW1100:B1114ECK3247:JW3228:B3260ECK2775:JW2752:B2781
ECOL199310 C3314C3313C1389C4026C3346
ECAR218491 ECA3535ECA3534ECA1821ECA0256ECA3568
DSP255470 CBDBA74CBDBA75CBDBA1211CBDBA1735
DSP216389 DEHABAV1_0053DEHABAV1_0054DEHABAV1_1092DEHABAV1_1381
DSHI398580 DSHI_1577DSHI_1577DSHI_1561DSHI_1576DSHI_1160
DRED349161 DRED_0187DRED_0188DRED_0111DRED_0172DRED_0114
DPSY177439 DP0257DP0257DP0282DP2594
DOLE96561 DOLE_2147DOLE_1666DOLE_1705DOLE_2866DOLE_0781
DHAF138119 DSY0443DSY0444DSY0189DSY0217DSY0192
DDES207559 DDE_1726DDE_1726DDE_2039DDE_2453
DARO159087 DARO_1973DARO_1974DARO_1965DARO_3665
CVIO243365 CV_1258CV_1259CV_1146CV_0544
CTET212717 CTC_02626CTC_00232CTC_00208CTC_00198
CTEP194439 CT_1317CT_1601CT_1929CT_2086
CSP78 CAUL_2603CAUL_2603CAUL_2619CAUL_2604CAUL_2613
CSP501479 CSE45_1378CSE45_1378CSE45_1943CSE45_1379CSE45_1940
CSAL290398 CSAL_2638CSAL_2637CSAL_1567CSAL_2287CSAL_1639
CPSY167879 CPS_1072CPS_1073CPS_2139CPS_0550CPS_4114
CPHY357809 CPHY_0353CPHY_3326CPHY_0425CPHY_0132
CPER289380 CPR_2426CPR_2302CPR_2493CPR_2469CPR_2489
CPER195103 CPF_2739CPF_2616CPF_2807CPF_2783CPF_2803
CPER195102 CPE2429CPE2316CPE2484CPE2467CPE2480
CNOV386415 NT01CX_1092NT01CX_0736NT01CX_1020NT01CX_1044NT01CX_1024
CMIC443906 CMM_2489CMM_2489CMM_1584CMM_2266
CMIC31964 CMS2745CMS2745CMS1555CMS2459
CKLU431943 CKL_0200CKL_3774CKL_0152CKL_0175CKL_0156
CJAP155077 CJA_2223CJA_2222CJA_1764CJA_2745CJA_2574
CHYD246194 CHY_2342CHY_2341CHY_0200CHY_2369CHY_0204
CHUT269798 CHU_3100CHU_3180CHU_0360CHU_3483
CGLU196627 CG2945CG1099CG2841CG1107
CEFF196164 CE2521CE1034CE2461CE1037
CDIF272563 CD0047CD0048CD3554CD3497
CDES477974 DAUD_0186DAUD_0186DAUD_0072DAUD_0127DAUD_0074
CCHL340177 CAG_0929CAG_1782CAG_0242CAG_1977
CBOT536232 CLM_3975CLM_0110CLM_4031CLM_4007CLM_4027
CBOT515621 CLJ_B3816CLJ_B0100CLJ_B3869CLJ_B3845CLJ_B3865
CBOT508765 CLL_A0216CLL_A0353CLL_A0152CLL_A0175CLL_A0156
CBOT498213 CLD_0997CLD_0719CLD_0944CLD_0969CLD_0948
CBOT441772 CLI_3691CLI_0123CLI_3759CLI_3730CLI_3755
CBOT441771 CLC_3453CLC_0114CLC_3517CLC_3485CLC_3513
CBOT441770 CLB_3564CLB_0102CLB_3620CLB_3596CLB_3616
CBOT36826 CBO3504CBO0066CBO3539CBO3521CBO3535
CBEI290402 CBEI_0129CBEI_0297CBEI_0086CBEI_0103CBEI_0090
CAULO CC1738CC1738CC1844CC1739CC1747
CACE272562 CAC3184CAC0434CAC3216CAC3199CAC3212
BWEI315730 BCERKBAB4_0080BCERKBAB4_0081BCERKBAB4_0048BCERKBAB4_0071BCERKBAB4_0051
BVIE269482 BCEP1808_1870BCEP1808_1869BCEP1808_1871BCEP1808_0658
BTRI382640 BT_0870BT_0870BT_1197BT_1331
BTHU412694 BALH_0085BALH_0086BALH_0048BALH_0074BALH_0053
BTHU281309 BT9727_0082BT9727_0083BT9727_0048BT9727_0071BT9727_0051
BTHE226186 BT_3923BT_3884BT_3073BT_4350
BTHA271848 BTH_I2089BTH_I2090BTH_I2088BTH_I1252
BSUI470137 BSUIS_A1169BSUIS_A1169BSUIS_B0575BSUIS_A1168
BSUI204722 BR_1120BR_1120BR_A0579BR_1119BR_1067
BSUB BSU00900BSU00910BSU00550BSU00810BSU00580
BSP376 BRADO3869BRADO3869BRADO3771BRADO3868BRADO3851
BSP36773 BCEP18194_A5254BCEP18194_A5253BCEP18194_A5255BCEP18194_A3779
BPUM315750 BPUM_0075BPUM_0076BPUM_0039BPUM_0065BPUM_0042
BPSE320373 BURPS668_2358BURPS668_2357BURPS668_2359BURPS668_3360
BPSE272560 BPSL2099BPSL2098BPSL2100BPSL2894
BPET94624 BPET1695BPET1696BPET1694BPET0908
BPER257313 BP0865BP0866BP0864BP3414
BPAR257311 BPP3366BPP3365BPP3367BPP3564
BOVI236 GBOORF1120GBOORF1120GBOORFA0597GBOORF1119GBOORF1067
BMEL359391 BAB1_1143BAB1_1143BAB2_0661BAB1_1142BAB1_1089
BMEL224914 BMEI0863BMEI0863BMEII0688BMEI0864BMEI0920
BMAL320389 BMA10247_1259BMA10247_1258BMA10247_1260BMA10247_2538
BMAL320388 BMASAVP1_A1987BMASAVP1_A1986BMASAVP1_A1988BMASAVP1_A0272
BMAL243160 BMA_1490BMA_1489BMA_1491BMA_2358
BLIC279010 BL03265BL03266BL00515BL03311BL00512
BJAP224911 BLL4485BLL4485BLL4601BLR4486BLL4494
BHEN283166 BH05820BH05820BH08750BH07410
BHAL272558 BH0107BH0108BH0069BH0097BH0072
BFRA295405 BF3962BF4006BF4566BF1048
BFRA272559 BF3735BF3780BF4353BF0964
BCLA66692 ABC0125ABC0126ABC0083ABC0116ABC0089
BCER572264 BCA_0114BCA_0115BCA_0063BCA_0088BCA_0066
BCER405917 BCE_0085BCE_0086BCE_0051BCE_0074BCE_0054
BCER315749 BCER98_0080BCER98_0081BCER98_0048BCER98_0071BCER98_0051
BCER288681 BCE33L0081BCE33L0082BCE33L0048BCE33L0071BCE33L0051
BCER226900 BC_0106BC_0107BC_0058BC_0083BC_0061
BCEN331272 BCEN2424_1943BCEN2424_1942BCEN2424_1944BCEN2424_0693
BCEN331271 BCEN_6136BCEN_6137BCEN_6135BCEN_0209
BCAN483179 BCAN_A1139BCAN_A1139BCAN_B0579BCAN_A1138BCAN_A1082
BBRO257310 BB3817BB3816BB3818BB3999
BANT592021 BAA_0101BAA_0102BAA_0063BAA_0088BAA_0066
BANT568206 BAMEG_0101BAMEG_0102BAMEG_0063BAMEG_0088BAMEG_0066
BANT261594 GBAA0084GBAA0085GBAA0052GBAA0075GBAA0055
BANT260799 BAS0085BAS0086BAS0052BAS0075BAS0055
BAMY326423 RBAM_001150RBAM_001160RBAM_000640RBAM_000910RBAM_000670
BAMB398577 BAMMC406_1858BAMMC406_1857BAMMC406_1859BAMMC406_0612
BAMB339670 BAMB_1931BAMB_1930BAMB_1932BAMB_0586
BABO262698 BRUAB1_1126BRUAB1_1126BRUAB2_0645BRUAB1_1125BRUAB1_1072
AVAR240292 AVA_2414AVA_1811AVA_0645AVA_2914
ASP76114 EBA6543EBA6542EBA6555EBA1152
ASP62977 ACIAD1999ACIAD1996ACIAD1395ACIAD2557ACIAD3065
ASP62928 AZO1682AZO1683AZO1673AZO2892
ASP232721 AJS_3156AJS_3155AJS_3157AJS_3586
ASP1667 ARTH_0728ARTH_1245ARTH_1336ARTH_1146
ASAL382245 ASA_3473ASA_3472ASA_1881ASA_0808ASA_3477
APLE434271 APJL_0807APJL_0808APJL_1357APJL_0190APJL_0624
APLE416269 APL_0802APL_0803APL_1339APL_0189APL_0630
AORE350688 CLOS_0463CLOS_0464CLOS_2642CLOS_0447CLOS_2638
AMET293826 AMET_4506AMET_4505AMET_0160AMET_4527AMET_0164
AMAR329726 AM1_3984AM1_2915AM1_4147AM1_1374AM1_4247
AHYD196024 AHA_0823AHA_0824AHA_2003AHA_3510AHA_0819
AEHR187272 MLG_1837MLG_1836MLG_1800MLG_1399MLG_1457
ADEH290397 ADEH_1272ADEH_1272ADEH_4332ADEH_3790ADEH_2724
ACRY349163 ACRY_0551ACRY_2031ACRY_1754ACRY_2032ACRY_1759
ACEL351607 ACEL_1533ACEL_0081ACEL_1913ACEL_1910
ACAU438753 AZC_3089AZC_3089AZC_1221AZC_3088AZC_1656
ABOR393595 ABO_1166ABO_1167ABO_1028ABO_2013ABO_1622
ABAU360910 BAV1060BAV1059BAV1061BAV2774
ABAC204669 ACID345_0188ACID345_0187ACID345_4549ACID345_0030ACID345_2185
AAVE397945 AAVE_1581AAVE_1582AAVE_1580AAVE_0894
AAUR290340 AAUR_0899AAUR_1356AAUR_1486AAUR_1262


Organism features enriched in list (features available for 321 out of the 347 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0002129217
Arrangment:Pairs 0.002763074112
Endospores:No 7.812e-2360211
Endospores:Yes 2.891e-125153
GC_Content_Range4:0-40 1.041e-2755213
GC_Content_Range4:40-60 8.221e-7151224
GC_Content_Range4:60-100 2.458e-12115145
GC_Content_Range7:0-30 0.00017021447
GC_Content_Range7:30-40 5.162e-2141166
GC_Content_Range7:50-60 3.019e-1087107
GC_Content_Range7:60-70 1.566e-10105134
Genome_Size_Range5:0-2 1.147e-4414155
Genome_Size_Range5:4-6 3.629e-31163184
Genome_Size_Range5:6-10 9.210e-74147
Genome_Size_Range9:1-2 5.799e-3214128
Genome_Size_Range9:2-3 0.000356350120
Genome_Size_Range9:3-4 0.00316635377
Genome_Size_Range9:4-5 9.746e-138396
Genome_Size_Range9:5-6 3.762e-158088
Genome_Size_Range9:6-8 2.544e-63438
Gram_Stain:Gram_Neg 1.289e-11223333
Gram_Stain:Gram_Pos 0.004345970150
Habitat:Host-associated 1.216e-1077206
Habitat:Multiple 2.112e-8128178
Habitat:Specialized 0.00348542053
Habitat:Terrestrial 0.00009232731
Motility:No 4.801e-855151
Motility:Yes 2.122e-9182267
Optimal_temp.:25-30 9.305e-61919
Optimal_temp.:30-37 0.0007201318
Optimal_temp.:35-37 0.00038241313
Optimal_temp.:37 0.007156448106
Oxygen_Req:Aerobic 0.0044950115185
Pathogenic_in:Plant 0.00846481315
Shape:Coccus 4.053e-111882
Shape:Irregular_coccus 0.0000205117
Shape:Rod 5.829e-29256347
Shape:Sphere 0.0003738319
Shape:Spiral 7.531e-8434
Temp._range:Hyperthermophilic 2.643e-6223
Temp._range:Psychrophilic 0.004419199



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 115
Effective number of orgs (counting one per cluster within 468 clusters): 98

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391296 ncbi Streptococcus suis 98HAH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SPNE170187 ncbi Streptococcus pneumoniae G541
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-401
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBLO203907 ncbi Candidatus Blochmannia floridanus0
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  G7423   EG11816   EG11619   EG11311   EG10572   
WSUC273121 WS1940
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TLET416591 TLET_0067
TKOD69014
TACI273075
STOK273063
SSUI391296 SSU98_1975
SSOL273057
SPNE170187 SPN01079
SMAR399550
SACI330779
RTYP257363 RT0010
RRIC452659 RRIOWA_0019
RRIC392021 A1G_00080
RPRO272947 RP011
RMAS416276
RFEL315456 RF_0012
RCON272944 RC0011
RCAN293613 A1E_00045
RBEL391896 A1I_01285
RBEL336407 RBE_1199
RAKA293614 A1C_00320
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244 OTBS_1639
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0068
MMOB267748
MMAZ192952 MM1343
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311 MFL029
MCAP340047 MCAP_0837
MBUR259564 MBUR_2154
MBAR269797 MBAR_A1003
MART243272
MAEO419665
MACE188937 MA0035
LPNE400673 LPC_2333
LPNE297246 LPP1016
LPNE297245 LPL0983
LPNE272624 LPG0954
LMES203120 LEUM_0399
LINT363253 LI0446
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0404
HPYL357544 HPAG1_0427
HPY HP1020
HMUK485914
HMAR272569
HHEP235279 HH_1582
HBUT415426
HACI382638 HAC_1124
CSUL444179
CPEL335992 SAR11_0945
CMET456442
CMAQ397948
CKOR374847
CHOM360107 CHAB381_0932
CFET360106 CFF8240_0409
CCUR360105 CCV52592_0202
CCON360104 CCC13826_1467
CBUR434922 COXBU7E912_1246
CBUR360115 COXBURSA331_A1299
CBUR227377 CBU_1148
CBLO203907
BXEN266265
BTUR314724
BPSE320372 BURPS1710B_A3677
BHER314723
BGAR290434
BBUR224326
BAPH372461
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
ALAI441768 ACL_1378
AFUL224325
ABUT367737 ABU_0126


Organism features enriched in list (features available for 111 out of the 115 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0018583892
Arrangment:Pairs 0.00024839112
Arrangment:Singles 0.000186471286
Disease:Legionnaire's_disease 0.001257144
Disease:Rocky_Mountain_Spotted_Fever 0.006751133
Endospores:No 5.358e-865211
GC_Content_Range4:0-40 2.371e-968213
GC_Content_Range4:60-100 6.277e-79145
GC_Content_Range7:0-30 4.932e-92647
GC_Content_Range7:30-40 0.005231242166
GC_Content_Range7:50-60 0.001450710107
GC_Content_Range7:60-70 5.335e-69134
Genome_Size_Range5:0-2 7.625e-2171155
Genome_Size_Range5:4-6 1.562e-154184
Genome_Size_Range5:6-10 0.0022290247
Genome_Size_Range9:0-1 2.261e-102027
Genome_Size_Range9:1-2 1.408e-1051128
Genome_Size_Range9:4-5 6.742e-7396
Genome_Size_Range9:5-6 3.766e-8188
Genome_Size_Range9:6-8 0.0023529138
Gram_Stain:Gram_Pos 1.598e-105150
Habitat:Host-associated 0.001798752206
Habitat:Multiple 4.486e-109178
Habitat:Specialized 0.00001152353
Optimal_temp.:100 0.006751133
Optimal_temp.:35-40 0.006751133
Optimal_temp.:85 0.001257144
Oxygen_Req:Anaerobic 0.000164933102
Oxygen_Req:Facultative 0.003653227201
Pathogenic_in:Swine 0.005123945
Salinity:Extreme_halophilic 0.003252057
Shape:Irregular_coccus 6.551e-101517
Shape:Pleomorphic 0.007076258
Shape:Rod 2.700e-1332347
Shape:Sphere 6.585e-101619
Shape:Spiral 0.00036081534
Temp._range:Hyperthermophilic 4.477e-101823
Temp._range:Mesophilic 0.000057675473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4223160.5596
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652850.5360
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4583270.5265
GLYCOCAT-PWY (glycogen degradation I)2462160.5221
PWY-5340 (sulfate activation for sulfonation)3852920.5158
PWY-6317 (galactose degradation I (Leloir pathway))4643280.5156
PWY-4041 (γ-glutamyl cycle)2792340.5108
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3002450.5038
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292600.4968
PROSYN-PWY (proline biosynthesis I)4753300.4968
FAO-PWY (fatty acid β-oxidation I)4573220.4931
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951790.4905
PWY-5938 ((R)-acetoin biosynthesis I)3762830.4860
ARO-PWY (chorismate biosynthesis I)5103420.4859
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491470.4849
NONMEVIPP-PWY (methylerythritol phosphate pathway)4843320.4845
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112480.4833
PANTO-PWY (pantothenate biosynthesis I)4723260.4758
GLUTAMINDEG-PWY (glutamine degradation I)1911740.4739
PWY-5148 (acyl-CoA hydrolysis)2271970.4738
ILEUSYN-PWY (isoleucine biosynthesis I (from threonine))5053380.4678
PWY-6389 ((S)-acetoin biosynthesis)3682760.4668
PWY-5386 (methylglyoxal degradation I)3052420.4662
METSYN-PWY (homoserine and methionine biosynthesis)3972890.4562
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392590.4553
PWY-6268 (adenosylcobalamin salvage from cobalamin)3172470.4553
PWY-5918 (heme biosynthesis I)2722210.4528
THISYN-PWY (thiamin biosynthesis I)5023350.4525
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2892300.4473
P344-PWY (acrylonitrile degradation)2101820.4446
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2492060.4440
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2492060.4440
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162960.4411
PWY-5194 (siroheme biosynthesis)3122420.4409
MET-SAM-PWY (superpathway of S-adenosyl-L-methionine biosynthesis)3922840.4393
CYSTSYN-PWY (cysteine biosynthesis I)5043340.4380
HISTSYN-PWY (histidine biosynthesis)4993320.4376
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2702170.4344
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862260.4325
HOMOSER-METSYN-PWY (methionine biosynthesis I)4192960.4312
VALDEG-PWY (valine degradation I)2902280.4306
GLYSYN-THR-PWY (glycine biosynthesis IV)2151830.4299
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3832780.4294
TYRFUMCAT-PWY (tyrosine degradation I)1841630.4286
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742730.4267
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982850.4260
GLUCONSUPER-PWY (D-gluconate degradation)2291910.4252
PWY-6164 (3-dehydroquinate biosynthesis I)5163370.4249
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3712710.4237
PWY-6087 (4-chlorocatechol degradation)2231870.4232
PWY0-501 (lipoate biosynthesis and incorporation I)3852780.4227
RIBOSYN2-PWY (flavin biosynthesis I (bacteria and plants))5233390.4199
PWY-5028 (histidine degradation II)1301250.4182
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181830.4172
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002310.4133
FERMENTATION-PWY (mixed acid fermentation)5123340.4123
VALSYN-PWY (valine biosynthesis)5153350.4110
GLUCARDEG-PWY (D-glucarate degradation I)1521390.4088
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2552040.4072
PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)5193360.4066
SERSYN-PWY (serine biosynthesis)5193360.4066
PWY-6385 (peptidoglycan biosynthesis III (mycobacteria))4142900.4066
CENTFERM-PWY (acetyl-CoA fermentation to butyrate I)2081750.4053
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482560.4046
P163-PWY (lysine fermentation to acetate and butyrate)3672660.4045
CRNFORCAT-PWY (creatinine degradation I)1911640.4038
PWY-5703 (urea degradation I)1851600.4028
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251850.4015
PWY-5686 (uridine-5'-phosphate biosynthesis)5263380.4013
PWY-841 (purine nucleotides de novo biosynthesis II)4983270.4004
FASYN-ELONG-PWY (fatty acid elongation -- saturated)5213360.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11816   EG11619   EG11311   EG10572   
G74230.9999890.9992990.9993480.999243
EG118160.9992260.9993210.999235
EG116190.9985680.999488
EG113110.998663
EG10572



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PAIRWISE BLAST SCORES:

  G7423   EG11816   EG11619   EG11311   EG10572   
G74230.0f0----
EG11816-0.0f0---
EG11619--0.0f0--
EG11311---0.0f0-
EG10572----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- NONMEVIPP-PWY (methylerythritol phosphate pathway) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.400, average score: 0.646)
  Genes in pathway or complex:
             0.0318 0.0017 G6237 (dxs) DXS-MONOMER (Dxs)
             0.7920 0.2893 EG12715 (dxr) DXPREDISOM-MONOMER (Dxr)
             0.2694 0.0018 EG10370 (ispG) EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
             0.2736 0.0688 EG11081 (ispH) EG11081-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase)
   *in cand* 0.9996 0.9992 G7423 (ispD) G7423-MONOMER (4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer)
             0.9731 0.9371 EG11294 (ispE) EG11294-MONOMER (IspE)
   *in cand* 0.9996 0.9992 EG11816 (ispF) EG11816-MONOMER (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer)
             0.7260 0.1006 G7508 (idi) IPPISOM-MONOMER (isopentenyl diphosphate isomerase)
             0.8165 0.2605 EG11328 (fdx) OX-FERREDOXIN (oxidized ferredoxin)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9987 EG10572 (mazG) EG10572-MONOMER (nucleoside triphosphate pyrophosphohydrolase)
   *in cand* 0.9992 0.9986 EG11311 (dusB) EG11311-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9993 0.9986 EG11619 (mfd) EG11619-MONOMER (transcription-repair coupling factor)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11816 G7423 (centered at G7423)
EG10572 (centered at EG10572)
EG11311 (centered at EG11311)
EG11619 (centered at EG11619)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7423   EG11816   EG11619   EG11311   EG10572   
418/623415/623413/623414/623376/623
AAEO224324:0:Tyes688431--0
AAUR290340:2:Tyes-0450577358
AAVE397945:0:Tyes6786796770-
ABAC204669:0:Tyes158157456102174
ABAU360910:0:Tyes1021719-
ABOR393595:0:Tyes13813901002607
ABUT367737:0:Tyes-0---
ACAU438753:0:Tyes1889188901888442
ACEL351607:0:Tyes144801828-1825
ACRY349163:8:Tyes01487120414881208
ADEH290397:0:Tyes00308825461469
AEHR187272:0:Tyes433432396058
AFER243159:0:Tyes102--
AHYD196024:0:Tyes45116226130
ALAI441768:0:Tyes---0-
AMAR234826:0:Tyes637636-0-
AMAR329726:9:Tyes25881527275102850
AMET293826:0:Tyes42974296043214
ANAE240017:0:Tyes-128211730-
AORE350688:0:Tyes1920226302259
APHA212042:0:Tyes-653-0-
APLE416269:0:Tyes61361411600442
APLE434271:0:Tno58658711530408
ASAL382245:5:Tyes25522551103102556
ASP1667:3:Tyes-0523614422
ASP232721:2:Tyes102421-
ASP62928:0:Tyes91001229-
ASP62977:0:Tyes568565010711533
ASP76114:2:Tyes3184318331910-
AVAR240292:3:Tyes17781175-02280
BABO262698:0:Tno--0--
BABO262698:1:Tno5353-520
BAMB339670:3:Tno1375137413760-
BAMB398577:3:Tno1257125612580-
BAMY326423:0:Tyes51520273
BANT260799:0:Tno37380253
BANT261594:2:Tno32330233
BANT568206:2:Tyes32330233
BANT592021:2:Tno33340233
BAPH198804:0:Tyes10---
BBAC264462:0:Tyes--2240-0
BBAC360095:0:Tyes00235--
BBRO257310:0:Tyes102188-
BCAN483179:0:Tno--0--
BCAN483179:1:Tno5757-560
BCEN331271:0:Tno120--
BCEN331271:2:Tno---0-
BCEN331272:3:Tyes1248124712490-
BCER226900:1:Tyes48490253
BCER288681:0:Tno37380253
BCER315749:1:Tyes32330233
BCER405917:1:Tyes34350233
BCER572264:1:Tno32330233
BCIC186490:0:Tyes10---
BCLA66692:0:Tyes58590346
BFRA272559:1:Tyes27122762-33300
BFRA295405:0:Tno29502999-35840
BHAL272558:0:Tyes56570293
BHEN283166:0:Tyes00273-144
BJAP224911:0:Fyes0011719
BLIC279010:0:Tyes40410283
BLON206672:0:Tyes0-688-518
BMAL243160:1:Tno102775-
BMAL320388:1:Tno1681168016820-
BMAL320389:1:Tyes1021251-
BMEL224914:0:Tno--0--
BMEL224914:1:Tno00-159
BMEL359391:0:Tno--0--
BMEL359391:1:Tno5050-490
BOVI236:0:Tyes--0--
BOVI236:1:Tyes4242-410
BPAR257311:0:Tno102199-
BPER257313:0:Tyes1202307-
BPET94624:0:Tyes7927937910-
BPSE272560:1:Tyes102809-
BPSE320372:1:Tno---0-
BPSE320373:1:Tno102956-
BPUM315750:0:Tyes41420283
BQUI283165:0:Tyes0070--
BSP107806:2:Tyes1231220--
BSP36773:2:Tyes1499149815000-
BSP376:0:Tyes929209174
BSUB:0:Tyes52530283
BSUI204722:0:Tyes--0--
BSUI204722:1:Tyes5353-520
BSUI470137:0:Tno--0--
BSUI470137:1:Tno11-0-
BTHA271848:1:Tno8158168140-
BTHE226186:0:Tyes862823-01293
BTHU281309:1:Tno32330233
BTHU412694:1:Tno43440253
BTRI382640:1:Tyes00293-421
BVIE269482:7:Tyes1203120212040-
BWEI315730:4:Tyes49500253
CABO218497:0:Tyes0---209
CACE272562:1:Tyes27510279227722788
CAULO:0:Tyes0010619
CBEI290402:0:Tyes432090174
CBLO291272:0:Tno01---
CBOT36826:1:Tno34010343434173430
CBOT441770:0:Tyes33610339433773390
CBOT441771:0:Tno32260325932423255
CBOT441772:1:Tno34360347034533466
CBOT498213:1:Tno34550348834713484
CBOT508765:1:Tyes461820164
CBOT515621:2:Tyes36060363936223635
CBOT536232:0:Tno37060374337263739
CBUR227377:1:Tyes--0--
CBUR360115:1:Tno--0--
CBUR434922:2:Tno--0--
CCAV227941:1:Tyes0---228
CCHL340177:0:Tyes6921553-01746
CCON360104:2:Tyes-0---
CCUR360105:0:Tyes-0---
CDES477974:0:Tyes1141140552
CDIF272563:1:Tyes01-35703511
CDIP257309:0:Tyes1064--9990
CEFF196164:0:Fyes1529-014683
CFEL264202:1:Tyes234---0
CFET360106:0:Tyes-0---
CGLU196627:0:Tyes1681-015907
CHOM360107:1:Tyes-0---
CHUT269798:0:Tyes26922773-03069
CHYD246194:0:Tyes20792078020984
CJAP155077:0:Tyes4464450966796
CJEI306537:0:Tyes---01166
CJEJ192222:0:Tyes-1435-0-
CJEJ195099:0:Tno-1609-0-
CJEJ354242:2:Tyes-1389-0-
CJEJ360109:0:Tyes-1714-0-
CJEJ407148:0:Tno-1426-0-
CKLU431943:1:Tyes3435600174
CMIC31964:2:Tyes11171117-0846
CMIC443906:2:Tyes926926-0700
CMUR243161:1:Tyes217---0
CNOV386415:0:Tyes6020860184
CPEL335992:0:Tyes-0---
CPER195102:1:Tyes1230194170190
CPER195103:0:Tno1120166149162
CPER289380:3:Tyes1130167150163
CPHY357809:0:Tyes2203165-2920
CPNE115711:1:Tyes0---182
CPNE115713:0:Tno177---0
CPNE138677:0:Tno180---0
CPNE182082:0:Tno190---0
CPRO264201:0:Fyes0-1220-401
CPSY167879:0:Tyes508509155703462
CRUT413404:0:Tyes0-258--
CSAL290398:0:Tyes10861085073472
CSP501479:8:Fyes005541551
CSP78:2:Tyes0016110
CTEP194439:0:Tyes0281-605760
CTET212717:0:Tyes222933-90
CTRA471472:0:Tyes216---0
CTRA471473:0:Tno216---0
CVES412965:0:Tyes0-212--
CVIO243365:0:Tyes7357366210-
DARO159087:0:Tyes8901702-
DDES207559:0:Tyes00323-745
DETH243164:0:Tyes01--1517
DGEO319795:1:Tyes0---634
DHAF138119:0:Tyes2632640283
DNOD246195:0:Tyes--2640-
DOLE96561:0:Tyes137088392321030
DPSY177439:2:Tyes0025-2408
DRAD243230:3:Tyes23300--940
DRED349161:0:Tyes83840603
DSHI398580:5:Tyes4214214054200
DSP216389:0:Tyes011061-1361
DSP255470:0:Tno01987-1447
DVUL882:1:Tyes268268--0
ECAN269484:0:Tyes10-218-
ECAR218491:0:Tyes33163315157303349
ECHA205920:0:Tyes10-573-
ECOL199310:0:Tno18951894025941926
ECOL316407:0:Tno16391638021451672
ECOL331111:6:Tno17361735024101771
ECOL362663:0:Tno16251624022481658
ECOL364106:1:Tno18721871024561904
ECOL405955:2:Tyes17191718022941747
ECOL409438:6:Tyes18501849024001890
ECOL413997:0:Tno14871486020121516
ECOL439855:4:Tno83583401490882
ECOL469008:0:Tno49549619900466
ECOL481805:0:Tno52152220410487
ECOL585034:0:Tno16701669022221708
ECOL585035:0:Tno18161815024281845
ECOL585055:0:Tno17731772024151808
ECOL585056:2:Tno17821781024391820
ECOL585057:0:Tno893892017311172
ECOL585397:0:Tno18741873025761904
ECOL83334:0:Tno21582157027002198
ECOLI:0:Tno16831682022011717
ECOO157:0:Tno21032102026472143
EFAE226185:3:Tyes-0199209-
EFER585054:1:Tyes333498329450
ELIT314225:0:Tyes-2410240233
ERUM254945:0:Tyes-0-253-
ERUM302409:0:Tno-0-253-
ESP42895:1:Tyes16001599020821617
FALN326424:0:Tyes2802792-0
FJOH376686:0:Tyes---01488
FMAG334413:1:Tyes7877860--
FNOD381764:0:Tyes0---846
FNUC190304:0:Tyes0208---
FPHI484022:1:Tyes0133013861731-
FRANT:0:Tno1765611110-
FSP106370:0:Tyes3303290-2
FSP1855:0:Tyes01436-438
FSUC59374:0:Tyes01928--200
FTUL351581:0:Tno613075128-
FTUL393011:0:Tno529056104-
FTUL393115:0:Tyes1765591110-
FTUL401614:0:Tyes0483413362-
FTUL418136:0:Tno398118500-
FTUL458234:0:Tno543065112-
GBET391165:0:Tyes1831830392290
GFOR411154:0:Tyes---25680
GKAU235909:1:Tyes47480273
GMET269799:1:Tyes10349225072351
GOXY290633:5:Tyes1600160004091377
GSUL243231:0:Tyes3333333209821149
GTHE420246:1:Tyes33340253
GURA351605:0:Tyes4001400207713109
GVIO251221:0:Tyes17682535282901568
HACI382638:1:Tyes-0---
HARS204773:0:Tyes1563156215650-
HAUR316274:2:Tyes--18176210
HCHE349521:0:Tyes606183740560
HDUC233412:0:Tyes7617604620882
HHAL349124:0:Tyes131613151144-0
HHEP235279:0:Tyes-0---
HINF281310:0:Tyes19819711775220
HINF374930:0:Tyes1426142758811090
HINF71421:0:Tno2102097855150
HMOD498761:0:Tyes1011010604
HNEP81032:0:Tyes282802718
HPY:0:Tno-0---
HPYL357544:1:Tyes-0---
HPYL85963:0:Tno-0---
HSOM205914:1:Tyes9309325970558
HSOM228400:0:Tno2010901121567
ILOI283942:0:Tyes10790158051
JSP290400:1:Tyes00891111
JSP375286:0:Tyes1125112611240-
KPNE272620:2:Tyes23862385029462405
KRAD266940:2:Fyes1731723-0
LACI272621:0:Tyes--07-
LBIF355278:2:Tyes-0--311
LBIF456481:2:Tno-0--327
LBOR355276:1:Tyes410--98
LBOR355277:1:Tno5795--0
LBRE387344:2:Tyes--09-
LCAS321967:1:Tyes0-14111397-
LCHO395495:0:Tyes1782178014920-
LDEL321956:0:Tyes--09-
LDEL390333:0:Tyes--09-
LGAS324831:0:Tyes--08-
LHEL405566:0:Tyes--07-
LINN272626:1:Tno3637013-
LINT189518:1:Tyes02565--3044
LINT267671:1:Tno19700--2584
LINT363253:3:Tyes-0---
LJOH257314:0:Tyes--09-
LLAC272622:5:Tyes--02084-
LLAC272623:0:Tyes--01948-
LMES203120:1:Tyes--0--
LMON169963:0:Tno3637013-
LMON265669:0:Tyes2223014-
LPLA220668:0:Tyes--09-
LPNE272624:0:Tno--0--
LPNE297245:1:Fno--0--
LPNE297246:1:Fyes--0--
LPNE400673:0:Tno--0--
LREU557436:0:Tyes--08-
LSAK314315:0:Tyes--90-
LSPH444177:1:Tyes447744760283
LWEL386043:0:Tyes23-015-
LXYL281090:0:Tyes841841-0758
MABS561007:1:Tyes0-586-587
MACE188937:0:Tyes---0-
MAER449447:0:Tyes14020--1724
MAQU351348:2:Tyes0199525001297
MAVI243243:0:Tyes01--580
MBAR269797:1:Tyes---0-
MBOV233413:0:Tno2589---0
MBOV410289:0:Tno2580---0
MBUR259564:0:Tyes---0-
MCAP243233:0:Tyes23442345171716000
MCAP340047:0:Tyes---0-
MEXT419610:0:Tyes00133511086
MFLA265072:0:Tyes76276313940-
MFLO265311:0:Tyes---0-
MGIL350054:3:Tyes870--0287
MLEP272631:0:Tyes01---
MLOT266835:2:Tyes0035319
MMAG342108:0:Tyes00102229
MMAR394221:0:Tyes0046111
MMAZ192952:0:Tyes---0-
MMYC272632:0:Tyes---0-
MPET420662:1:Tyes1084108510830-
MSME246196:0:Tyes6466451-0
MSP164756:1:Tno5035021-0
MSP164757:0:Tno5095081-0
MSP189918:2:Tyes5025011-0
MSP266779:3:Tyes10109190
MSP400668:0:Tyes474845717650
MSP409:2:Tyes00374119
MSUC221988:0:Tyes212421230335137
MTBCDC:0:Tno2771---0
MTBRV:0:Tno2582---0
MTHE264732:0:Tyes234923480653
MTUB336982:0:Tno2558---0
MTUB419947:0:Tyes2670---0
MVAN350058:0:Tyes0-650-649
MXAN246197:0:Tyes--051123595
NARO279238:0:Tyes006218
NEUR228410:0:Tyes143214220886-
NEUT335283:2:Tyes1379115901067-
NFAR247156:2:Tyes0-44941744493
NGON242231:0:Tyes7497484420-
NHAM323097:2:Tyes00204111
NMEN122586:0:Tno2212200133-
NMEN122587:0:Tyes2172160136-
NMEN272831:0:Tno1871860115-
NMEN374833:0:Tno2212200131-
NMUL323848:3:Tyes198019795060-
NOCE323261:1:Tyes01757-15
NSEN222891:0:Tyes390-228-
NSP103690:6:Tyes47023400-7180
NSP35761:1:Tyes31203106010152
NSP387092:0:Tyes-0-605-
NWIN323098:0:Tyes0072110
OANT439375:4:Tyes--0--
OANT439375:5:Tyes00-183
OCAR504832:0:Tyes0011719
OIHE221109:0:Tyes--0-3
OTSU357244:0:Fyes---0-
PACN267747:0:Tyes01190-192
PAER208963:0:Tyes0664938372835
PAER208964:0:Tno27272721208439670
PARC259536:0:Tyes15341134137711910
PATL342610:0:Tyes36143615146103465
PCAR338963:0:Tyes1211019221353
PCRY335284:1:Tyes1740102515369540
PDIS435591:0:Tyes-0-6131216
PENT384676:0:Tyes26692665220733030
PFLU205922:0:Tyes513517328403642
PFLU216595:1:Tyes66266692503751
PFLU220664:0:Tyes518522126003718
PGIN242619:0:Tyes12346-01466
PHAL326442:1:Tyes33733815160392
PING357804:0:Tyes78143123880
PINT246198:1:Tyes310-2401611
PLUM243265:0:Fyes0121443419198
PLUT319225:0:Tyes10101288-01705
PMAR146891:0:Tyes0966--1381
PMAR167539:0:Tyes0913--1421
PMAR167540:0:Tyes0840-5631257
PMAR167542:0:Tyes0944--1385
PMAR167546:0:Tyes0990--1404
PMAR167555:0:Tyes01200--1671
PMAR59920:0:Tno9620--451
PMAR74546:0:Tyes0935--1353
PMAR74547:0:Tyes9810--1886
PMAR93060:0:Tyes0981--1446
PMEN399739:0:Tyes2364235989701043
PMOB403833:0:Tyes154---0
PMUL272843:1:Tyes567568046244
PNAP365044:8:Tyes102817-
PPEN278197:0:Tyes--90-
PPRO298386:2:Tyes68268101012686
PPUT160488:0:Tno04540319843
PPUT351746:0:Tyes59158701128489
PPUT76869:0:Tno04538374189
PRUM264731:0:Tyes5211250--0
PSP117:0:Tyes32300-4063-
PSP296591:2:Tyes1576157515770-
PSP312153:0:Tyes120959-
PSP56811:2:Tyes140069513726860
PSTU379731:0:Tyes07108817061099
PSYR205918:0:Tyes0453930602347
PSYR223283:2:Tyes045443264139
PTHE370438:0:Tyes175176-1390
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