CANDIDATE ID: 621

CANDIDATE ID: 621

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9942160e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   3.8000000e-13

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11710 (glvC) (b3683)
   Products of gene:
     - GLVC-MONOMER (GlvC)
     - CPLX0-232 (EIIBCGlv)

- EG11709 (glvB) (b3682)
   Products of gene:
     - GLVB-MONOMER (GlvB)
     - CPLX0-232 (EIIBCGlv)

- EG10787 (ptsG) (b1101)
   Products of gene:
     - PTSG-MONOMER (PtsG)
     - CPLX-157 (enzyme II glc)
       Reactions:
        phosphoenolpyruvate + beta-D-glucose[periplasmic space]  ->  beta-D-glucose-6-phosphate[cytosol] + pyruvate

- EG10635 (nagE) (b0679)
   Products of gene:
     - NAGE-MONOMER (NagE)
     - CPLX-167 (N-acetylglucosamine PTS permease)
       Reactions:
        phosphoenolpyruvate + N-acetyl-beta-D-glucosamine[periplasmic space]  ->  N-acetyl-D-glucosamine-6-phosphate[cytosol] + pyruvate

- EG10563 (malX) (b1621)
   Products of gene:
     - MALX-MONOMER (MalX)
     - CPLX-164 (EIIBCMalX)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 163
Effective number of orgs (counting one per cluster within 468 clusters): 91

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSUI391296 ncbi Streptococcus suis 98HAH335
SSUI391295 ncbi Streptococcus suis 05ZYH335
SSON300269 ncbi Shigella sonnei Ss0465
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153055
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705855
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-145
SPNE171101 ncbi Streptococcus pneumoniae R65
SPNE170187 ncbi Streptococcus pneumoniae G545
SPNE1313 Streptococcus pneumoniae5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14355
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122285
SEPI176279 ncbi Staphylococcus epidermidis RP62A5
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2275
SAUR93062 ncbi Staphylococcus aureus aureus COL5
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83255
SAUR426430 ncbi Staphylococcus aureus aureus Newman5
SAUR418127 ncbi Staphylococcus aureus aureus Mu35
SAUR367830 Staphylococcus aureus aureus USA3005
SAUR359787 ncbi Staphylococcus aureus aureus JH15
SAUR359786 ncbi Staphylococcus aureus aureus JH95
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4765
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2525
SAUR273036 ncbi Staphylococcus aureus RF1225
SAUR196620 ncbi Staphylococcus aureus aureus MW25
SAUR158879 ncbi Staphylococcus aureus aureus N3155
SAUR158878 ncbi Staphylococcus aureus aureus Mu505
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
REUT381666 ncbi Ralstonia eutropha H165
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L485
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
PACN267747 ncbi Propionibacterium acnes KPA1712024
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273434
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LJOH257314 ncbi Lactobacillus johnsonii NCC 5335
LGAS324831 ncbi Lactobacillus gasseri ATCC 333235
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255865
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
EFAE226185 ncbi Enterococcus faecalis V5835
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DRED349161 ncbi Desulfotomaculum reducens MI-14
DGEO319795 ncbi Deinococcus geothermalis DSM 113005
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CTET212717 ncbi Clostridium tetani E885
CSP78 Caulobacter sp.4
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CDIF272563 ncbi Clostridium difficile 6305
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CAULO ncbi Caulobacter crescentus CB154
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTUR314724 ncbi Borrelia turicatae 91E1355
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1685
BSP36773 Burkholderia sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BHER314723 ncbi Borrelia hermsii DAH5
BHAL272558 ncbi Bacillus halodurans C-1255
BGAR290434 ncbi Borrelia garinii PBi5
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBUR224326 ncbi Borrelia burgdorferi B315
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BAFZ390236 ncbi Borrelia afzelii PKo5
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AHYD196024 Aeromonas hydrophila dhakensis5


Names of the homologs of the genes in the group in each of these orgs
  EG11710   EG11709   EG10787   EG10635   EG10563   
YPSE349747 YPSIP31758_2908YPSIP31758_2908YPSIP31758_1586YPSIP31758_2908YPSIP31758_1586
YPSE273123 YPTB1120YPTB1120YPTB2463YPTB1120YPTB2463
YPES386656 YPDSF_2625YPDSF_2625YPDSF_1839YPDSF_2625YPDSF_1839
YPES377628 YPN_1114YPN_1114YPN_2021YPN_1114YPN_2021
YPES360102 YPA_2469YPA_2469YPA_1917YPA_2469YPA_1917
YPES349746 YPANGOLA_A0339YPANGOLA_A0339YPANGOLA_A3490YPANGOLA_A0339YPANGOLA_A3490
YPES214092 YPO2628YPO2628YPO1608YPO2628YPO1608
YPES187410 Y1203Y1203Y1767Y1203Y1767
YENT393305 YE3199YE3199YE1643YE2978YE2011
VVUL216895 VV1_0179VV1_2999VV1_0179VV1_0179
VVUL196600 VV1012VV1283VV1012VV1012
VPAR223926 VP0831VP2046VP0831VP0831
VFIS312309 VF1719VFA0786VF1732VF0808VF1719
VCHO345073 VC0395_A0516VC0395_A1599VC0395_A0516VC0395_A0516
VCHO VC0995VC2013VC0995VC0995
TTEN273068 TTE0468TTE0468TTE0468TTE0468TTE0468
TSP1755 TETH514_0412TETH514_0412TETH514_0412TETH514_0412TETH514_0412
TPSE340099 TETH39_1823TETH39_1823TETH39_1823TETH39_1823TETH39_1823
STYP99287 STM2758STM0685STM1203STM0685STM2758
STHE292459 STH350STH2448STH350STH350STH350
SSUI391296 SSU98_1414SSU98_1414SSU98_1414SSU98_0384SSU98_1414
SSUI391295 SSU05_1401SSU05_1401SSU05_1401SSU05_0398SSU05_1401
SSON300269 SSO_3634SSO_3634SSO_1121SSO_0633SSO_1537
SSAP342451 SSP0583SSP0583SSP0336SSP0336SSP0234
SPRO399741 SPRO_2008SPRO_2008SPRO_1914SPRO_1228SPRO_2263
SPNE488221 SP70585_1723SP70585_1723SP70585_1723SP70585_0803SP70585_1723
SPNE487213 SPT_1622SPT_1622SPT_1622SPT_0772SPT_1622
SPNE171101 SPR1528SPR1528SPR1528SPR0668SPR1528
SPNE170187 SPN13095SPN13095SPN13095SPN13095SPN13095
SPNE1313 SPJ_1578SPJ_1578SPJ_1578SPJ_0696SPJ_1578
SHIGELLA MALXGLVBPTSGNAGEMALX
SHAE279808 SH0732SH0732SH0521SH0521SH0358
SGLO343509 SG0859SG0859SG0859SG0859SG1913
SFLE373384 SFV_3828SFV_3828SFV_1121SFV_0652SFV_1638
SFLE198214 AAN45222.1AAN45222.1AAN42724.1AAN42252.1AAN43228.1
SEPI176280 SE_1897SE_1897SE_2102SE_2102SE_2102
SEPI176279 SERP1909SERP1909SERP2114SERP2114SERP2114
SENT454169 SEHA_C2932SEHA_C0804SEHA_C1317SEHA_C0804SEHA_C2932
SENT321314 SCH_1153SCH_0706SCH_1153SCH_0706SCH_0706
SENT295319 SPA1648SPA2056SPA1648SPA2056SPA2056
SENT220341 STY1242STY0723STY1242STY0723STY0723
SENT209261 T1717T2190T1717T2190T2190
SDYS300267 SDY_1842SDY_0613SDY_2049SDY_0613SDY_1842
SCO SCO0434SCO0434SCO2907SCO2907SCO0434
SBOY300268 SBO_3688SBO_3688SBO_1962SBO_0541SBO_1513
SAUR93062 SACOL2316SACOL2316SACOL0175SACOL2552SACOL0224
SAUR93061 SAOUHSC_02597SAOUHSC_02597SAOUHSC_00155SAOUHSC_02848SAOUHSC_00209
SAUR426430 NWMN_2224NWMN_2224NWMN_0133NWMN_2437NWMN_0177
SAUR418127 SAHV_2307SAHV_2307SAHV_0188SAHV_2522SAHV_0241
SAUR367830 SAUSA300_2270SAUSA300_2270SAUSA300_0191SAUSA300_2476SAUSA300_0236
SAUR359787 SAURJH1_2390SAURJH1_2390SAURJH1_0179SAURJH1_2614SAURJH1_0233
SAUR359786 SAURJH9_2347SAURJH9_2347SAURJH9_0174SAURJH9_2561SAURJH9_0227
SAUR282459 SAS2216SAS2216SAS0164SAS2424SAS0218
SAUR282458 SAR2408SAR2408SAR0190SAR2618SAR0235
SAUR273036 SAB2200CSAB2200CSAB0129CSAB2412CSAB0181C
SAUR196620 MW2244MW2244MW0163MW2459MW0218
SAUR158879 SA2114SA2114SA0183SA2326SA0233
SAUR158878 SAV2323SAV2323SAV0189SAV2538SAV0242
RXYL266117 RXYL_1733RXYL_1733RXYL_1733RXYL_1733
REUT381666 H16_A0312H16_A0312H16_A0312H16_A0312H16_A0312
PPRO298386 PBPRA1760PBPRA1032PBPRA1760PBPRB0263PBPRA1203
PMUL272843 PM0876PM0876PM0876PM0876PM1752
PLUM243265 PLU1989PLU1989PLU1318PLU1318PLU1989
PING357804 PING_2725PING_2725PING_2725PING_0491PING_0491
PFLU220664 PFL_1078PFL_1078PFL_1078PFL_1078PFL_1078
PFLU216595 PFLU5028PFLU5028PFLU5028PFLU5028
PFLU205922 PFL_1003PFL_1003PFL_1003PFL_1003
PENT384676 PSEEN4383PSEEN4383PSEEN4383PSEEN4383PSEEN4383
PAER208964 PA3761PA3761PA3761PA3761PA3761
PAER208963 PA14_15780PA14_15780PA14_15780PA14_15780PA14_15780
PACN267747 PPA0294PPA0675PPA0675PPA0294
OIHE221109 OB1882OB1882OB1882OB1882OB1882
MSME246196 MSMEG_2116MSMEG_2116MSMEG_2116MSMEG_2116MSMEG_2116
MCAP340047 MCAP_0094MCAP_0129MCAP_0129MCAP_0783
LSPH444177 BSPH_2347BSPH_2347BSPH_2347BSPH_2347BSPH_2347
LJOH257314 LJ_0636LJ_0636LJ_0610LJ_0610LJ_0610
LGAS324831 LGAS_1688LGAS_1688LGAS_1688LGAS_1688LGAS_1688
KPNE272620 GKPORF_B3442GKPORF_B3442GKPORF_B0012GKPORF_B5125GKPORF_B0505
GTHE420246 GTNG_2202GTNG_2202GTNG_0878GTNG_2202GTNG_0878
GKAU235909 GK0991GK0991GK0991GK0991GK0991
FNUC190304 FN1547FN1547FN1547FN1547FN1547
ESP42895 ENT638_0017ENT638_0017ENT638_1616ENT638_1194ENT638_1827
EFER585054 EFER_3978EFER_3978EFER_1826EFER_2430EFER_2430
EFAE226185 EF_0028EF_0028EF_1516EF_1516EF_0028
ECOO157 Z5178Z5178PTSGNAGEMALX
ECOL83334 ECS4623ECS4623ECS1479ECS0709ECS2329
ECOL585397 ECED1_5002ECED1_3271ECED1_1244ECED1_0660ECED1_1821
ECOL585057 ECIAI39_4285ECIAI39_4285ECIAI39_2060ECIAI39_0636ECIAI39_1436
ECOL585056 ECUMN_4214ECUMN_4214ECUMN_1279ECUMN_0764ECUMN_1911
ECOL585055 EC55989_4152EC55989_4152EC55989_1213EC55989_0665EC55989_1788
ECOL585035 ECS88_1668ECS88_3110ECS88_1115ECS88_0704ECS88_1668
ECOL585034 ECIAI1_3861ECIAI1_3861ECIAI1_1137ECIAI1_0657ECIAI1_1672
ECOL481805 ECOLC_0020ECOLC_0020ECOLC_2500ECOLC_2977ECOLC_2977
ECOL469008 ECBD_0020ECBD_0020ECBD_2500ECBD_2983ECBD_2024
ECOL439855 ECSMS35_4047ECSMS35_4047ECSMS35_2026ECSMS35_0701ECSMS35_1578
ECOL413997 ECB_03566ECB_03566ECB_01097ECB_00636ECB_01590
ECOL409438 ECSE_3969ECSE_3969ECSE_1165ECSE_0740ECSE_1742
ECOL405955 APECO1_704APECO1_3690APECO1_182APECO1_1393APECO1_704
ECOL364106 UTI89_C1809UTI89_C3215UTI89_C1228UTI89_C0674UTI89_C1809
ECOL362663 ECP_1565ECP_2827ECP_1093ECP_0691ECP_1565
ECOL331111 ECE24377A_4190ECE24377A_4190ECE24377A_1222ECE24377A_0705ECE24377A_1829
ECOL316407 ECK3675:JW3660:B3683ECK3674:JW3659:B3682ECK1087:JW1087:B1101ECK0667:JW0665:B0679ECK1616:JW1613:B1621
ECOL199310 C2013C3408C1373C0755C2013
ECAR218491 ECA1848ECA1848ECA1805ECA1327ECA3225
DRED349161 DRED_0332DRED_0332DRED_0332DRED_0332
DGEO319795 DGEO_2620DGEO_2620DGEO_2620DGEO_2620DGEO_2620
CVIO243365 CV_0559CV_0979CV_0979CV_0559CV_0559
CTET212717 CTC_00278CTC_00278CTC_00278CTC_00278CTC_00278
CSP78 CAUL_0295CAUL_0295CAUL_0295CAUL_0295
CPHY357809 CPHY_1768CPHY_1768CPHY_1768CPHY_1768
CPER289380 CPR_2124CPR_2124CPR_2124CPR_0093CPR_2124
CPER195103 CPF_2412CPF_2412CPF_2412CPF_0071CPF_2412
CPER195102 CPE0196CPE0196CPE2157CPE0076CPE2157
CDIF272563 CD3061CD3061CD2667CD2667CD1336
CBOT536232 CLM_0335CLM_0335CLM_1502CLM_3202CLM_0327
CBOT515621 CLJ_B0331CLJ_B0331CLJ_B1441CLJ_B3065CLJ_B0322
CBOT508765 CLL_A3423CLL_A3423CLL_A0718CLL_A0718CLL_A3423
CBOT498213 CLD_0475CLD_0475CLD_3231CLD_1820CLD_0484
CBOT441772 CLI_0350CLI_0350CLI_1421CLI_2891CLI_0341
CBOT441771 CLC_0336CLC_0336CLC_1364CLC_1364CLC_0327
CBOT441770 CLB_0321CLB_0321CLB_1354CLB_1354CLB_0312
CBOT36826 CBO0277CBO0277CBO1327CBO1327CBO0268
CBEI290402 CBEI_4705CBEI_4705CBEI_4532CBEI_4532CBEI_4983
CAULO CC0538CC0538CC0538CC0538
CACE272562 CAC0532CAC0532CAC1353CAC1353CAC3425
BWEI315730 BCERKBAB4_3879BCERKBAB4_0418BCERKBAB4_3879BCERKBAB4_3879BCERKBAB4_3879
BVIE269482 BCEP1808_2925BCEP1808_2925BCEP1808_2925BCEP1808_2925BCEP1808_2925
BTUR314724 BT0645BT0826ABT0826ABT0826ABT0645
BTHU412694 BALH_3666BALH_0438BALH_3666BALH_0438BALH_3666
BTHU281309 BT9727_3791BT9727_0415BT9727_3791BT9727_3791BT9727_3791
BTHA271848 BTH_I0450BTH_I0450BTH_I0450BTH_I0450BTH_I0450
BSUB BSU08200BSU08200BSU02350BSU07700BSU13890
BSP36773 BCEP18194_A6151BCEP18194_A6151BCEP18194_A6151BCEP18194_A6151BCEP18194_A6151
BPUM315750 BPUM_0660BPUM_0660BPUM_1279BPUM_0720BPUM_1279
BPSE320373 BURPS668_0538BURPS668_0538BURPS668_0538BURPS668_0538BURPS668_0538
BPSE320372 BURPS1710B_A0764BURPS1710B_A0764BURPS1710B_A0764BURPS1710B_A0764BURPS1710B_A0764
BPSE272560 BPSL0499BPSL0499BPSL0499BPSL0499BPSL0499
BMAL320389 BMA10247_2874BMA10247_2874BMA10247_2874BMA10247_2874BMA10247_2874
BMAL320388 BMASAVP1_A0142BMASAVP1_A0142BMASAVP1_A0142BMASAVP1_A0142BMASAVP1_A0142
BMAL243160 BMA_3172BMA_3172BMA_3172BMA_3172BMA_3172
BLIC279010 BL03019BL03019BL03565BL00088BL03565
BHER314723 BH0645BH0826ABH0826ABH0826ABH0645
BHAL272558 BH0844BH0422BH0844BH0422BH0844
BGAR290434 BG0668BGB26BGB26BGB26BG0668
BCLA66692 ABC3580ABC3580ABC0194ABC0194ABC0713
BCER572264 BCA_4162BCA_0520BCA_4162BCA_0520BCA_4162
BCER405917 BCE_4117BCE_0554BCE_4117BCE_0554BCE_4117
BCER315749 BCER98_2749BCER98_0427BCER98_2749BCER98_0427BCER98_2749
BCER288681 BCE33L3806BCE33L0411BCE33L3806BCE33L0411BCE33L3806
BCER226900 BC_4050BC_0482BC_4050BC_4050BC_4050
BCEN331272 BCEN2424_2821BCEN2424_2821BCEN2424_2821BCEN2424_2821BCEN2424_2821
BCEN331271 BCEN_2207BCEN_2207BCEN_2207BCEN_2207BCEN_2207
BBUR224326 BB_0645BB_B29BB_0645BB_0645BB_0645
BANT592021 BAA_4292BAA_0561BAA_4292BAA_0561BAA_4292
BANT568206 BAMEG_4310BAMEG_4107BAMEG_4310BAMEG_4107BAMEG_4310
BANT261594 GBAA4269GBAA0501GBAA4269GBAA0501GBAA4269
BANT260799 BAS3960BAS0472BAS3960BAS0472BAS3960
BAMY326423 RBAM_008380RBAM_008380RBAM_013660RBAM_007900RBAM_013660
BAMB398577 BAMMC406_2739BAMMC406_2739BAMMC406_2739BAMMC406_2739BAMMC406_2739
BAMB339670 BAMB_2881BAMB_2881BAMB_2881BAMB_2881BAMB_2881
BAFZ390236 BAPKO_0689BAPKO_5027BAPKO_5027BAPKO_0689BAPKO_0689
ASAL382245 ASA_4276ASA_4276ASA_3166ASA_2827ASA_2951
AHYD196024 AHA_0116AHA_0116AHA_1168AHA_1527AHA_1427


Organism features enriched in list (features available for 153 out of the 163 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00808163392
Arrangment:Clusters 8.868e-81517
Arrangment:Pairs 2.250e-1463112
Disease:Anthrax 0.004606944
Disease:Botulism 0.001185555
Disease:Bubonic_plague 0.000303666
Disease:Dysentery 0.000303666
Disease:Gastroenteritis 0.00014961013
Disease:None 0.0085167858
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 3.095e-71111
Disease:Urinary_tract_infection 0.004606944
Disease:endocarditis 0.004606944
Endospores:Yes 2.720e-123753
GC_Content_Range4:60-100 0.002518026145
GC_Content_Range7:0-30 0.00503922047
GC_Content_Range7:50-60 0.009670837107
GC_Content_Range7:60-70 0.003625124134
Genome_Size_Range5:0-2 1.154e-139155
Genome_Size_Range5:4-6 1.728e-1182184
Genome_Size_Range9:1-2 2.249e-126128
Genome_Size_Range9:4-5 9.307e-74596
Genome_Size_Range9:5-6 0.00020113788
Gram_Stain:Gram_Neg 0.007343576333
Gram_Stain:Gram_Pos 5.108e-967150
Habitat:Aquatic 0.00023001191
Habitat:Multiple 0.000697062178
Habitat:Specialized 0.0089931753
Habitat:Terrestrial 0.00371561531
Motility:Yes 0.000014592267
Optimal_temp.:30-37 4.635e-61418
Optimal_temp.:37 0.002686839106
Oxygen_Req:Aerobic 8.976e-628185
Oxygen_Req:Facultative 3.106e-1390201
Pathogenic_in:Animal 0.00017263066
Pathogenic_in:Human 3.673e-1698213
Pathogenic_in:No 6.575e-1127226
Shape:Rod 1.982e-7117347
Temp._range:Hyperthermophilic 0.0066987123
Temp._range:Mesophilic 2.774e-6142473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 433
Effective number of orgs (counting one per cluster within 468 clusters): 353

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSP94122 ncbi Shewanella sp. ANA-31
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB31
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEG203122 ncbi Saccharophagus degradans 2-400
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 531
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPET420662 ncbi Methylibium petroleiphilum PM10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE450
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG11710   EG11709   EG10787   EG10635   EG10563   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TSP28240
TROS309801
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSP94122 SHEWANA3_2822
SSP84588
SSP64471
SSP644076
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104 SSED_3167
SRUB309807
SPYO370554 MGAS10750_SPY1784
SPYO370553 MGAS2096_SPY1714
SPYO370552 MGAS10270_SPY1759
SPYO370551 MGAS9429_SPY1693
SPYO319701 M28_SPY1678
SPYO293653 M5005_SPY1692
SPYO286636 M6_SPY1698
SPYO198466 SPYM3_1708
SPYO193567 SPS1708
SPYO186103
SPYO160490 SPY1986
SPNE487214 SPH_0859
SPEA398579
SMEL266834
SMED366394
SMAR399550
SLAC55218
SHAL458817
SGOR29390 SGO_0505
SFUM335543
SELO269084
SDEG203122
SARE391037
SALA317655
SAGA211110 GBS1946
SAGA208435 SAG_1959
SAGA205921 SAK_1920
SACI56780
SACI330779
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSOL267608
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFER338969
RFEL315456
REUT264198
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSYR223283
PSYR205918
PSTU379731
PSP56811
PSP312153
PSP296591
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PNAP365044
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
OANT439375
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723 MS53_0147
MSUC221988
MSTA339860
MSP409
MSP400668
MSP266779
MSP189918
MSP164757
MSP164756
MSED399549
MPUL272635 MYPU_0170
MPET420662
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719 MHJ_0575
MHUN323259
MGIL350054
MFLO265311
MFLA265072
MEXT419610
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LDEL390333
LDEL321956
LCHO395495
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HCHE349521
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP501479
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CABO218497
BXEN266265
BTRI382640
BTHE226186
BSUI470137
BSUI204722
BSP376
BQUI283165
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BLON206672
BJAP224911
BHEN283166
BFRA295405
BFRA272559
BCIC186490
BCAN483179
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
APLE434271
APLE416269
APHA212042
APER272557
AORE350688
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAVE397945
AAUR290340
AAEO224324


Organism features enriched in list (features available for 405 out of the 433 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 8.436e-7217
Arrangment:Pairs 3.173e-1542112
Disease:Gastroenteritis 0.0005926313
Endospores:Yes 1.481e-121353
GC_Content_Range4:60-100 0.0016704114145
GC_Content_Range7:0-30 0.00041372247
GC_Content_Range7:60-70 0.0004322108134
Genome_Size_Range5:0-2 8.312e-10136155
Genome_Size_Range5:2-4 0.0079570148197
Genome_Size_Range5:4-6 2.641e-1095184
Genome_Size_Range9:1-2 1.892e-10116128
Genome_Size_Range9:4-5 2.172e-64796
Genome_Size_Range9:5-6 0.00055314888
Gram_Stain:Gram_Neg 0.0077220243333
Gram_Stain:Gram_Pos 7.136e-1172150
Habitat:Aquatic 0.00018647791
Habitat:Multiple 0.0004390107178
Habitat:Specialized 0.00391484553
Habitat:Terrestrial 0.00073291331
Motility:Yes 0.0000795165267
Optimal_temp.:25-35 0.0069414514
Optimal_temp.:30-37 0.0000331418
Optimal_temp.:35-37 0.00826481313
Optimal_temp.:37 0.001397161106
Oxygen_Req:Aerobic 1.575e-6152185
Oxygen_Req:Anaerobic 0.004937681102
Oxygen_Req:Facultative 1.287e-1794201
Pathogenic_in:Animal 0.00124533566
Pathogenic_in:Human 1.518e-12110213
Pathogenic_in:No 8.299e-9187226
Salinity:Mesophilic 0.00826481313
Shape:Irregular_coccus 0.00183991717
Shape:Rod 1.476e-6216347
Temp._range:Hyperthermophilic 0.00201612223
Temp._range:Mesophilic 3.267e-7308473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BGAR290434 ncbi Borrelia garinii PBi 0.00009232245
BAFZ390236 ncbi Borrelia afzelii PKo 0.00010322295
BBUR224326 ncbi Borrelia burgdorferi B31 0.00011022325
BHER314723 ncbi Borrelia hermsii DAH 0.00013082405
BTUR314724 ncbi Borrelia turicatae 91E135 0.00014512455
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 27343 0.00302701704


Names of the homologs of the genes in the group in each of these orgs
  EG11710   EG11709   EG10787   EG10635   EG10563   
BGAR290434 BG0668BGB26BGB26BGB26BG0668
BAFZ390236 BAPKO_0689BAPKO_5027BAPKO_5027BAPKO_0689BAPKO_0689
BBUR224326 BB_0645BB_B29BB_0645BB_0645BB_0645
BHER314723 BH0645BH0826ABH0826ABH0826ABH0645
BTUR314724 BT0645BT0826ABT0826ABT0826ABT0645
MCAP340047 MCAP_0094MCAP_0129MCAP_0129MCAP_0783


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Lyme_disease 0.000088422
Disease:Tick-borne_relapsing_fever 0.000088422
Endospores:No 0.00214666211
GC_Content_Range4:0-40 0.00227316213
GC_Content_Range7:0-30 2.020e-7647
Genome_Size_Range5:0-2 0.00032866155
Genome_Size_Range9:0-1 0.0015681327
Habitat:Host-associated 0.00185566206
Shape:Spiral 2.874e-6534



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1314 (fructose degradation)2241350.5814
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121940.5755
MANNIDEG-PWY (mannitol degradation I)99750.4905
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561590.4860
IDNCAT-PWY (L-idonate degradation)2461270.4680
RIBOKIN-PWY (ribose degradation)2791360.4627
GALACTITOLCAT-PWY (galactitol degradation)73590.4531
GLUTAMINDEG-PWY (glutamine degradation I)1911030.4200
PWY-6196 (serine racemization)102690.4176
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134820.4172
PWY-3722 (glycine betaine biosynthesis II (Gram-positive bacteria))141840.4111
PWY-5480 (pyruvate fermentation to ethanol I)109710.4083
SUCUTIL-PWY (sucrose degradation I)124770.4075
SORBDEG-PWY (sorbitol degradation II)53450.4075
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135810.4049
TEICHOICACID-PWY (teichoic acid (poly-glycerol) biosynthesis)98660.4048
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391160.4016



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11709   EG10787   EG10635   EG10563   
EG117100.9996790.9993360.9991990.999463
EG117090.9994110.9995210.999251
EG107870.9996480.999442
EG106350.999266
EG10563



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PAIRWISE BLAST SCORES:

  EG11710   EG11709   EG10787   EG10635   EG10563   
EG117100.0f0-6.0e-338.2e-304.4e-41
EG11709-0.0f0-1.9e-122.8e-12
EG10787--0.0f02.2e-85-
EG10635--1.3e-780.0f0-
EG10563--3.4e-502.1e-580.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-232 (EIIBCGlv) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.400, average score: 0.990)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9992 EG11710 (glvC) GLVC-MONOMER (GlvC)
   *in cand* 0.9996 0.9993 EG11709 (glvB) GLVB-MONOMER (GlvB)
             0.9799 0.9637 EG10788 (ptsH) PTSH-MONOMER (HPr)
             0.9960 0.9934 EG10789 (ptsI) PTSI-MONOMER (PTS enzyme I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10563 (malX) MALX-MONOMER (MalX)
   *in cand* 0.9995 0.9992 EG10635 (nagE) NAGE-MONOMER (NagE)
   *in cand* 0.9996 0.9993 EG10787 (ptsG) PTSG-MONOMER (PtsG)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11709 EG11710 (centered at EG11710)
EG10563 (centered at EG10563)
EG10635 (centered at EG10635)
EG10787 (centered at EG10787)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11710   EG11709   EG10787   EG10635   EG10563   
157/623182/623187/623204/623163/623
AHYD196024:0:Tyes00102013761277
ANAE240017:0:Tyes-200-
ASAL382245:5:Tyes140014003210111
ASP1667:3:Tyes--00-
BAFZ390236:0:Tyes-00--
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