CANDIDATE ID: 657

CANDIDATE ID: 657

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9912270e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6402 (ybhK) (b0780)
   Products of gene:
     - G6402-MONOMER (predicted transferase with NAD(P)-binding Rossmann-fold domain)

- EG12146 (yhbJ) (b3205)
   Products of gene:
     - EG12146-MONOMER (predicted P-loop containing ATPase)

- EG11015 (tpiA) (b3919)
   Products of gene:
     - TPI-MONOMER (triose phosphate isomerase monomer)
     - TPI (triose phosphate isomerase)
       Reactions:
        D-glyceraldehyde-3-phosphate  =  dihydroxyacetone phosphate
         In pathways
         PWY-5464 (PWY-5464)
         PWY-6146 (PWY-6146)
         GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)
         PHOTOALL-PWY (PHOTOALL-PWY)
         ANAEROFRUCAT-PWY (ANAEROFRUCAT-PWY)
         P441-PWY (P441-PWY)
         PWY-3801 (PWY-3801)
         PWY-1042 (PWY-1042)
         P185-PWY (P185-PWY)
         P341-PWY (P341-PWY)
         PWY-6142 (PWY-6142)
         ANAGLYCOLYSIS-PWY (ANAGLYCOLYSIS-PWY)
         GLYCOLYSIS (glycolysis I)
         CALVIN-PWY (CALVIN-PWY)
         PWY-5484 (PWY-5484)
         PWY66-373 (PWY66-373)

- EG10368 (epd) (b2927)
   Products of gene:
     - ERYTH4PDEHYDROG-MONOMER (Epd)
     - ERYTH4PDEHYDROG-CPLX (erythrose 4-phosphate dehydrogenase)
       Reactions:
        D-erythrose-4-phosphate + NAD+ + H2O  ->  erythronate-4-phosphate + NADH + 2 H+
         In pathways
         PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)
         PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)

- EG10367 (gapA) (b1779)
   Products of gene:
     - GAPDH-A-MONOMER (glyceraldehyde 3-phosphate dehydrogenase-A monomer)
     - GAPDH-A-CPLX (glyceraldehyde 3-phosphate dehydrogenase-A complex)
       Reactions:
        D-glyceraldehyde-3-phosphate + phosphate + NAD+  =  1,3-diphosphateglycerate + NADH + H+
         In pathways
         PWY-5464 (PWY-5464)
         GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)
         ANAEROFRUCAT-PWY (ANAEROFRUCAT-PWY)
         P441-PWY (P441-PWY)
         PWY-3801 (PWY-3801)
         PWY-1042 (PWY-1042)
         P122-PWY (P122-PWY)
         GLUCONEO-PWY (gluconeogenesis I)
         P185-PWY (P185-PWY)
         ANAGLYCOLYSIS-PWY (ANAGLYCOLYSIS-PWY)
         GLYCOLYSIS (glycolysis I)
         P124-PWY (P124-PWY)
         PWY-5484 (PWY-5484)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 256
Effective number of orgs (counting one per cluster within 468 clusters): 164

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTHE300852 ncbi Thermus thermophilus HB85
TTHE262724 ncbi Thermus thermophilus HB275
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP28240 Thermotoga sp.5
TSP1755 Thermoanaerobacter sp.5
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TPET390874 ncbi Thermotoga petrophila RKU-15
TMAR243274 ncbi Thermotoga maritima MSB84
TFUS269800 ncbi Thermobifida fusca YX4
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STRO369723 ncbi Salinispora tropica CNB-4405
STHE322159 ncbi Streptococcus thermophilus LMD-94
STHE299768 ncbi Streptococcus thermophilus CNRZ10664
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
STHE264199 ncbi Streptococcus thermophilus LMG 183114
SSUI391296 ncbi Streptococcus suis 98HAH334
SSUI391295 ncbi Streptococcus suis 05ZYH334
SSP94122 ncbi Shewanella sp. ANA-34
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)5
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSP1148 ncbi Synechocystis sp. PCC 68034
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPYO370554 ncbi Streptococcus pyogenes MGAS107504
SPYO370553 ncbi Streptococcus pyogenes MGAS20964
SPYO370552 ncbi Streptococcus pyogenes MGAS102704
SPYO370551 ncbi Streptococcus pyogenes MGAS94294
SPYO319701 ncbi Streptococcus pyogenes MGAS61804
SPYO293653 ncbi Streptococcus pyogenes MGAS50054
SPYO286636 ncbi Streptococcus pyogenes MGAS103944
SPYO198466 ncbi Streptococcus pyogenes MGAS3154
SPYO193567 ncbi Streptococcus pyogenes SSI-14
SPYO186103 ncbi Streptococcus pyogenes MGAS82324
SPYO160490 ncbi Streptococcus pyogenes M1 GAS4
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705854
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-64
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-144
SPNE171101 ncbi Streptococcus pneumoniae R64
SPNE170187 ncbi Streptococcus pneumoniae G544
SPNE1313 Streptococcus pneumoniae4
SONE211586 ncbi Shewanella oneidensis MR-14
SMUT210007 ncbi Streptococcus mutans UA1594
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGOR29390 Streptococcus gordonii Challis4
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2174
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46805
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SARE391037 ncbi Salinispora arenicola CNS-2055
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
RSP101510 ncbi Rhodococcus jostii RHA14
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332094
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMOB403833 ncbi Petrotoga mobilis SJ954
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PACN267747 ncbi Propionibacterium acnes KPA1712025
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
NSP35761 Nocardioides sp.4
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NFAR247156 ncbi Nocardia farcinica IFM 101524
NEUT335283 ncbi Nitrosomonas eutropha C914
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-15
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra4
MTUB336982 ncbi Mycobacterium tuberculosis F114
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MTBRV ncbi Mycobacterium tuberculosis H37Rv4
MTBCDC ncbi Mycobacterium tuberculosis CDC15514
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP189918 ncbi Mycobacterium sp. KMS5
MSP164757 ncbi Mycobacterium sp. JLS5
MSP164756 ncbi Mycobacterium sp. MCS5
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MPET420662 ncbi Methylibium petroleiphilum PM14
MLEP272631 ncbi Mycobacterium leprae TN4
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK5
MCAP243233 ncbi Methylococcus capsulatus Bath4
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P24
MBOV233413 ncbi Mycobacterium bovis AF2122/974
MAVI243243 ncbi Mycobacterium avium 1045
MABS561007 ncbi Mycobacterium abscessus ATCC 199775
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LINN272626 ncbi Listeria innocua Clip112624
LCHO395495 ncbi Leptothrix cholodnii SP-64
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HHAL349124 ncbi Halorhodospira halophila SL14
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FSP1855 Frankia sp. EAN1pec5
FSP106370 ncbi Frankia sp. CcI34
FMAG334413 ncbi Finegoldia magna ATCC 293284
FALN326424 ncbi Frankia alni ACN14a4
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DRED349161 ncbi Desulfotomaculum reducens MI-15
DRAD243230 ncbi Deinococcus radiodurans R14
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
DARO159087 ncbi Dechloromonas aromatica RCB4
CTET212717 ncbi Clostridium tetani E885
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPER289380 ncbi Clostridium perfringens SM1014
CPER195102 ncbi Clostridium perfringens 134
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CKLU431943 ncbi Clostridium kluyveri DSM 5555
CJEI306537 ncbi Corynebacterium jeikeium K4114
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CEFF196164 ncbi Corynebacterium efficiens YS-3144
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131294
CDIF272563 ncbi Clostridium difficile 6305
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1685
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BHAL272558 ncbi Bacillus halodurans C-1255
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
ANAE240017 Actinomyces oris MG15
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAUR290340 ncbi Arthrobacter aurescens TC14
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  G6402   EG12146   EG11015   EG10368   EG10367   
YPSE349747 YPSIP31758_2837YPSIP31758_0438YPSIP31758_0096YPSIP31758_0848YPSIP31758_1987
YPSE273123 YPTB1189YPTB3529YPTB0081YPTB3197YPTB2083
YPES386656 YPDSF_2539YPDSF_0311YPDSF_3818YPDSF_0591YPDSF_0977
YPES377628 YPN_2843YPN_3468YPN_3763YPN_3121YPN_1623
YPES360102 YPA_1065YPA_3717YPA_3456YPA_0342YPA_1514
YPES349746 YPANGOLA_A1432YPANGOLA_A1156YPANGOLA_A0095YPANGOLA_A3815YPANGOLA_A2351
YPES214092 YPO1158YPO3586YPO0085YPO0922YPO2157
YPES187410 Y3024Y0158Y0052Y3309Y2165
YENT393305 YE2900YE3762YE0093YE3415YE2265
VVUL216895 VV1_3089VV1_0695VV1_1343VV1_1539VV1_3140
VVUL196600 VV1197VV0445VV3025VV2859VV1147
VPAR223926 VP2097VP2673VP0239VP2601VP2157
VFIS312309 VF0939VF0384VF0206VF0441VF0913
VCHO345073 VC0395_A0542VC0395_A2112VC0395_A2243VC0395_A0029VC0395_A1586
VCHO VC1023VC2532VC2670VC0476VC2000
TTHE300852 TTHA0318TTHA0319TTHA0947TTHA0905TTHA0905
TTHE262724 TT_C1665TT_C1664TT_C0581TT_C0549TT_C0549
TTEN273068 TTE1833TTE1834TTE1760TTE1762TTE1762
TSP28240 TRQ2_1125TRQ2_1124TRQ2_0239TRQ2_0241TRQ2_0241
TSP1755 TETH514_1179TETH514_1178TETH514_1308TETH514_1306TETH514_1306
TROS309801 TRD_0777TRD_0780TRD_0778TRD_0778
TPSE340099 TETH39_0667TETH39_0666TETH39_0733TETH39_0731TETH39_0731
TPET390874 TPET_1005TPET_1006TPET_0241TPET_0243TPET_0243
TMAR243274 TM_1709TM_0689TM_0688TM_0688
TFUS269800 TFU_2019TFU_2020TFU_2017TFU_2017
SWOL335541 SWOL_0263SWOL_0262SWOL_0272SWOL_0272
STYP99287 STM0801STM3323STM4081STM3070STM1290
STRO369723 STROP_3100STROP_3101STROP_3096STROP_3098STROP_3098
STHE322159 STER_0876STER_0875STER_0525STER_1761
STHE299768 STR0832STR0831STR0488STR1788
STHE292459 STH187STH186STH244STH2164STH1645
STHE264199 STU0832STU0831STU0488STU1788
SSUI391296 SSU98_0620SSU98_0619SSU98_0525SSU98_0158
SSUI391295 SSU05_0621SSU05_0620SSU05_0531SSU05_0155
SSP94122 SHEWANA3_2120SHEWANA3_0669SHEWANA3_1026SHEWANA3_3352
SSP321332 CYB_0993CYB_0992CYB_2157CYB_1704CYB_1429
SSP321327 CYA_0910CYA_0911CYA_0398CYA_0325CYA_0020
SSP1148 SLL0154SLR0783SLL1342SLR0884
SSON300269 SSO_0759SSO_3353SSO_4088SSO_3079SSO_1384
SSED425104 SSED_2224SSED_0723SSED_3393SSED_0875
SPYO370554 MGAS10750_SPY0558MGAS10750_SPY0557MGAS10750_SPY0528MGAS10750_SPY0228
SPYO370553 MGAS2096_SPY0551MGAS2096_SPY0550MGAS2096_SPY0521MGAS2096_SPY0252
SPYO370552 MGAS10270_SPY0534MGAS10270_SPY0533MGAS10270_SPY0503MGAS10270_SPY0233
SPYO370551 MGAS9429_SPY0530MGAS9429_SPY0529MGAS9429_SPY0499MGAS9429_SPY0235
SPYO319701 M28_SPY0518M28_SPY0517M28_SPY0488M28_SPY0227
SPYO293653 M5005_SPY0540M5005_SPY0539M5005_SPY0509M5005_SPY0233
SPYO286636 M6_SPY0560M6_SPY0559M6_SPY0530M6_SPY0265
SPYO198466 SPYM3_0463SPYM3_0462SPYM3_0433SPYM3_0201
SPYO193567 SPS1392SPS1393SPS1422SPS0207
SPYO186103 SPYM18_0714SPYM18_0713SPYM18_0680SPYM18_0261
SPYO160490 SPY0653SPY0652SPY0613SPY0274
SPRO399741 SPRO_1319SPRO_4370SPRO_4805SPRO_3946SPRO_2728
SPNE488221 SP70585_1606SP70585_1607SP70585_1615SP70585_2099
SPNE487214 SPH_1679SPH_1680SPH_1688SPH_2168
SPNE487213 SPT_1505SPT_1506SPT_1514SPT_2008
SPNE171101 SPR1423SPR1424SPR1432SPR1825
SPNE170187 SPN05356SPN05357SPN05370SPN25005
SPNE1313 SPJ_1471SPJ_1472SPJ_1480SPJ_2020
SONE211586 SO_2351SO_3964SO_1200SO_0931
SMUT210007 SMU_1305CSMU_1306CSMU_715SMU_360
SLOI323850 SHEW_1998SHEW_3314SHEW_2831SHEW_0753
SHIGELLA YBHKYHBJTPIAEPDGAPA
SHAL458817 SHAL_2210SHAL_3708SHAL_3151SHAL_0845
SGOR29390 SGO_0955SGO_0954SGO_0762SGO_0207
SGLO343509 SG0908SG0196SG2176SG1347
SFUM335543 SFUM_1024SFUM_2066SFUM_2059SFUM_2061
SFLE373384 SFV_0763SFV_3235SFV_3575SFV_2973SFV_1436
SFLE198214 AAN42365.1AAN44711.1AAN45431.1AAN44394.1AAN43042.1
SERY405948 SACE_2140SACE_2139SACE_2145SACE_2143
SENT454169 SEHA_C0927SEHA_C3620SEHA_C4412SEHA_C3307SEHA_C1417
SENT321314 SCH_0799SCH_3261SCH_3970SCH_3012SCH_1303
SENT295319 SPA1951SPA3190SPA3924SPA2941SPA1554
SENT220341 STY0835STY3502STY3789STY3228STY1825
SENT209261 T2086T3240T3537T2989T1169
SDYS300267 SDY_0826SDY_3386SDY_3826SDY_3155SDY_1488
SDEN318161 SDEN_1960SDEN_0486SDEN_1003SDEN_1084
SCO SCO1951SCO1952SCO1945SCO1947SCO1947
SBOY300268 SBO_0667SBO_3177SBO_3936SBO_3066SBO_1316
SBAL402882 SHEW185_2157SHEW185_0683SHEW185_3284SHEW185_3539
SBAL399599 SBAL195_2207SBAL195_0713SBAL195_3421SBAL195_3658
SAVE227882 SAV6293SAV6292SAV6298SAV6296SAV6296
SAUR93062 SACOL0831SACOL0830SACOL0840SACOL1734
SAUR93061 SAOUHSC_00788SAOUHSC_00787SAOUHSC_00797SAOUHSC_01794
SAUR426430 NWMN_0734NWMN_0733NWMN_0743NWMN_1580
SAUR418127 SAHV_0763SAHV_0762SAHV_0771SAHV_1673
SAUR367830 SAUSA300_0749SAUSA300_0748SAUSA300_0758SAUSA300_1633
SAUR282459 SAS0731SAS0730SAS0740SAS1615
SAUR282458 SAR0821SAR0820SAR0830SAR1766
SAUR273036 SAB0720SAB0719SAB0730SAB1546C
SAUR196620 MW0728MW0727MW0736MW1630
SAUR158879 SA0721SA0720SA0729SA1510
SAUR158878 SAV0766SAV0765SAV0774SAV1687
SARE391037 SARE_3327SARE_3328SARE_3323SARE_3325SARE_3325
SAGA211110 GBS0577GBS0576GBS0783GBS1811
SAGA208435 SAG_0532SAG_0531SAG_0763SAG_1768
SAGA205921 SAK_0682SAK_0681SAK_0888SAK_1790
RSP101510 RHA1_RO07175RHA1_RO07174RHA1_RO07177RHA1_RO07177
RSAL288705 RSAL33209_2274RSAL33209_2275RSAL33209_2271RSAL33209_2271
RFER338969 RFER_1653RFER_1491RFER_0919RFER_4111
REUT381666 H16_A0381H16_A1047H16_B1386H16_A3146
PTHE370438 PTH_2728PTH_2729PTH_2721PTH_2723PTH_1007
PPRO298386 PBPRA1121PBPRA3258PBPRA0235PBPRA3132PBPRA2602
PMUL272843 PM0626PM0169PM1311PM0924
PMOB403833 PMOB_0155PMOB_0154PMOB_1444PMOB_1445
PLUM243265 PLU1498PLU4044PLU4772PLU0955PLU2558
PING357804 PING_1891PING_2894PING_2199PING_1771PING_2367
PCAR338963 PCAR_1935PCAR_1333PCAR_1331PCAR_1331
PATL342610 PATL_1672PATL_0571PATL_1574PATL_3329PATL_1634
PACN267747 PPA0814PPA0813PPA0818PPA0816PPA0816
OIHE221109 OB2467OB2468OB2436OB2438OB2438
NSP35761 NOCA_2528NOCA_2527NOCA_2532NOCA_2530
NOCE323261 NOC_2797NOC_2566NOC_2807NOC_2807
NFAR247156 NFA35920NFA35930NFA35870NFA35890
NEUT335283 NEUT_1559NEUT_0920NEUT_0333NEUT_1578
NARO279238 SARO_2904SARO_2019SARO_1967SARO_1967
MVAN350058 MVAN_2699MVAN_2698MVAN_2705MVAN_2703MVAN_2703
MTUB419947 MRA_1431MRA_1430MRA_1446MRA_1444
MTUB336982 TBFG_11451TBFG_11450TBFG_11466TBFG_11464
MTHE264732 MOTH_0259MOTH_0258MOTH_0264MOTH_0262MOTH_0262
MTBRV RV1422RV1421RV1438RV1436
MTBCDC MT1465MT1464MT1482MT1480
MSUC221988 MS1020MS1718MS0324MS1739
MSP189918 MKMS_2444MKMS_2443MKMS_2452MKMS_2450MKMS_2450
MSP164757 MJLS_2438MJLS_2437MJLS_2446MJLS_2444MJLS_2444
MSP164756 MMCS_2397MMCS_2396MMCS_2406MMCS_2404MMCS_2404
MSME246196 MSMEG_3080MSMEG_3079MSMEG_3086MSMEG_3084MSMEG_3084
MPET420662 MPE_A3336MPE_A1401MPE_A0260MPE_A0260
MLEP272631 ML0564ML0563ML0570ML0570
MGIL350054 MFLV_3713MFLV_3714MFLV_3708MFLV_3710MFLV_3710
MCAP243233 MCA_0739MCA_0674MCA_2598MCA_2598
MBOV410289 BCG_1483BCG_1482BCG_1499BCG_1497
MBOV233413 MB1457MB1456MB1473MB1471
MAVI243243 MAV_3358MAV_3359MAV_3339MAV_3341MAV_3341
MABS561007 MAB_2782CMAB_2783CMAB_2777CMAB_2779CMAB_2779C
LWEL386043 LWE2421LWE2422LWE2405LWE2408
LSPH444177 BSPH_0449BSPH_0448BSPH_0466BSPH_0464BSPH_0464
LMON265669 LMOF2365_2446LMOF2365_2447LMOF2365_2430LMOF2365_2432
LMON169963 LMO2473LMO2474LMO2457LMO2459
LLAC272623 L189428L188550L0006L0005
LLAC272622 LACR_1048LACR_1047LACR_1244LACR_2555
LINN272626 LIN2616LIN2617LIN2551LIN2553
LCHO395495 LCHO_4051LCHO_3490LCHO_1499LCHO_0221
KRAD266940 KRAD_2933KRAD_2934KRAD_2931KRAD_2931
KPNE272620 GKPORF_B5236GKPORF_B2950GKPORF_B3366GKPORF_B2711GKPORF_B0209
JSP375286 MMA_3120MMA_1460MMA_0833MMA_0833
ILOI283942 IL0708IL0393IL0972IL2213
HSOM228400 HSM_1374HSM_1595HSM_0420HSM_0540
HSOM205914 HS_0896HS_1178HS_1591HS_1466
HMOD498761 HM1_1307HM1_1306HM1_1604HM1_1602HM1_1311
HHAL349124 HHAL_2130HHAL_1767HHAL_0918HHAL_0918
HARS204773 HEAR2885HEAR1828HEAR0850HEAR0850
GVIO251221 GLR4164GLR4163GLR0530GLL3325
GURA351605 GURA_2968GURA_2059GURA_2061GURA_2061
GTHE420246 GTNG_3014GTNG_3015GTNG_3005GTNG_2651GTNG_3007
GSUL243231 GSU_1884GSU_1628GSU_1629GSU_1629
GMET269799 GMET_1286GMET_1948GMET_1946GMET_1946
GKAU235909 GK3065GK3066GK3056GK2726GK3058
FSP1855 FRANEAN1_2061FRANEAN1_2060FRANEAN1_2065FRANEAN1_2063FRANEAN1_2063
FSP106370 FRANCCI3_1635FRANCCI3_1634FRANCCI3_4022FRANCCI3_1637
FMAG334413 FMG_1083FMG_1084FMG_0791FMG_0793
FALN326424 FRAAL4591FRAAL4592FRAAL4588FRAAL4588
ESP42895 ENT638_1272ENT638_3641ENT638_4052ENT638_3340ENT638_1675
EFER585054 EFER_2331EFER_3182EFER_3854EFER_2859EFER_1293
ECOO157 YBHKYHBJTPIAEPDGAPA
ECOL83334 ECS0858ECS4084ECS4844ECS3798ECS2488
ECOL585397 ECED1_0744ECED1_3863ECED1_4621ECED1_3382ECED1_1984
ECOL585057 ECIAI39_0756ECIAI39_3700ECIAI39_3077ECIAI39_3341ECIAI39_1274
ECOL585056 ECUMN_0922ECUMN_3685ECUMN_4447ECUMN_3272ECUMN_2068
ECOL585055 EC55989_0823EC55989_3623EC55989_4397EC55989_3215EC55989_1948
ECOL585035 ECS88_0797ECS88_3588ECS88_4369ECS88_3203ECS88_1832
ECOL585034 ECIAI1_0815ECIAI1_3353ECIAI1_4124ECIAI1_3047ECIAI1_1843
ECOL481805 ECOLC_2863ECOLC_0495ECOLC_4099ECOLC_0783ECOLC_1853
ECOL469008 ECBD_2843ECBD_0537ECBD_4105ECBD_0811ECBD_1865
ECOL439855 ECSMS35_0803ECSMS35_3501ECSMS35_4359ECSMS35_3064ECSMS35_1412
ECOL413997 ECB_00747ECB_03070ECB_03804ECB_02758ECB_01748
ECOL409438 ECSE_0834ECSE_3489ECSE_4208ECSE_3191ECSE_1950
ECOL405955 APECO1_1309APECO1_3230APECO1_2550APECO1_3606APECO1_847
ECOL364106 UTI89_C0778UTI89_C3641UTI89_C4503UTI89_C3310UTI89_C1975
ECOL362663 ECP_0794ECP_3293ECP_4128ECP_2916ECP_1727
ECOL331111 ECE24377A_0843ECE24377A_3693ECE24377A_4453ECE24377A_3255ECE24377A_2003
ECOL316407 ECK0769:JW0763:B0780ECK3194:JW3172:B3205ECK3911:JW3890:B3919ECK2923:JW2894:B2927ECK1777:JW1768:B1779
ECOL199310 C0861C3965C4871C3505C2184
ECAR218491 ECA2818ECA0285ECA4272ECA3913ECA2344
DRED349161 DRED_3053DRED_3054DRED_0134DRED_0132DRED_2991
DRAD243230 DR_1435DR_1434DR_1343DR_1343
DOLE96561 DOLE_0503DOLE_0499DOLE_2195DOLE_0500
DHAF138119 DSY4844DSY4845DSY4840DSY1507DSY1507
DGEO319795 DGEO_0722DGEO_0723DGEO_1133DGEO_1133
DARO159087 DARO_0070DARO_0947DARO_3593DARO_3625
CTET212717 CTC_02494CTC_02495CTC_00380CTC_00378CTC_00378
CPSY167879 CPS_2836CPS_4546CPS_3448CPS_3873CPS_2340
CPER289380 CPR_0336CPR_0335CPR_1299CPR_1301
CPER195102 CPE0355CPE0354CPE1302CPE1304
CMIC443906 CMM_1747CMM_1742CMM_1744CMM_1744
CKLU431943 CKL_3563CKL_3564CKL_3380CKL_1457CKL_1457
CJEI306537 JK1003JK1004JK1001JK1001
CJAP155077 CJA_2809CJA_2671CJA_1353CJA_1353
CHYD246194 CHY_0273CHY_0272CHY_0282CHY_0280CHY_0280
CGLU196627 CG1793CG1794CG1789CG1791
CEFF196164 CE1709CE1710CE1704CE1706
CDIP257309 DIP1312DIP1313DIP1310DIP1310
CDIF272563 CD3399CD3400CD3172CD1767CD1767
CBOT536232 CLM_3838CLM_3839CLM_0278CLM_0276CLM_1253
CBOT515621 CLJ_B3679CLJ_B3680CLJ_B0276CLJ_B0274CLJ_B1144
CBOT498213 CLD_1132CLD_1131CLD_0547CLD_0549CLD_3465
CBOT441772 CLI_3560CLI_3561CLI_0293CLI_0291CLI_1184
CBOT441771 CLC_3319CLC_3320CLC_0284CLC_0282CLC_1147
CBOT441770 CLB_3432CLB_3433CLB_0269CLB_0267CLB_1135
CBOT36826 CBO3376CBO3377CBO0228CBO0226CBO1095
BWEI315730 BCERKBAB4_4947BCERKBAB4_4948BCERKBAB4_4929BCERKBAB4_4413BCERKBAB4_4931
BVIE269482 BCEP1808_2900BCEP1808_2336BCEP1808_0612BCEP1808_0612
BTHU412694 BALH_4645BALH_4646BALH_4629BALH_4166BALH_4631
BTHU281309 BT9727_4832BT9727_4833BT9727_4816BT9727_4313BT9727_4818
BTHA271848 BTH_I0482BTH_I1058BTH_I1196BTH_I1196
BSUB BSU34760BSU34770BSU33920BSU29020BSU33940
BSP36773 BCEP18194_A6125BCEP18194_A5579BCEP18194_A3723BCEP18194_A3723
BPUM315750 BPUM_3114BPUM_3115BPUM_3055BPUM_2547BPUM_3057
BPSE320373 BURPS668_0577BURPS668_1287BURPS668_3430BURPS668_3430
BPSE320372 BURPS1710B_A0803BURPS1710B_A1515BURPS1710B_A3743BURPS1710B_A3743
BPSE272560 BPSL0529BPSL1209BPSL2952BPSL2952
BPET94624 BPET0443BPET1625BPET3623BPET3623
BMAL320389 BMA10247_2938BMA10247_0410BMA10247_3318BMA10247_3318
BMAL320388 BMASAVP1_A0080BMASAVP1_A1127BMASAVP1_A0388BMASAVP1_A0388
BMAL243160 BMA_3112BMA_1832BMA_2468BMA_2468
BLIC279010 BL03419BL03417BL03466BL00390BL03464
BHAL272558 BH3568BH3569BH3558BH3149BH3560
BCLA66692 ABC3035ABC3036ABC3019ABC2705ABC3021
BCER572264 BCA_5282BCA_5283BCA_5248BCA_4693BCA_5250
BCER405917 BCE_5258BCE_5259BCE_5240BCE_4714BCE_5242
BCER315749 BCER98_3697BCER98_3698BCER98_3680BCER98_3268BCER98_3682
BCER288681 BCE33L4847BCE33L4848BCE33L4826BCE33L4324BCE33L4828
BCER226900 BC_5155BC_5156BC_4583BC_5140
BCEN331272 BCEN2424_2795BCEN2424_2251BCEN2424_0639BCEN2424_0639
BCEN331271 BCEN_2181BCEN_1639BCEN_0156BCEN_0156
BANT592021 BAA_5413BAA_5414BAA_5396BAA_4838BAA_5398
BANT568206 BAMEG_5436BAMEG_5437BAMEG_5419BAMEG_4858BAMEG_5421
BANT261594 GBAA5383GBAA5384GBAA5366GBAA4827GBAA5369
BANT260799 BAS5003BAS5004BAS4987BAS4478BAS4989
BAMY326423 RBAM_031980RBAM_031990RBAM_031280RBAM_026060RBAM_031300
BAMB398577 BAMMC406_2713BAMMC406_2168BAMMC406_0563BAMMC406_0563
BAMB339670 BAMB_2855BAMB_2289BAMB_0539BAMB_0539
ASP1667 ARTH_2084ARTH_2083ARTH_2087ARTH_2087
ASAL382245 ASA_2780ASA_0318ASA_2232ASA_3506ASA_0759
APLE434271 APJL_0766APJL_0350APJL_1972APJL_0460
APLE416269 APL_0764APL_0334APL_1925APL_0434
AORE350688 CLOS_0575CLOS_0574CLOS_0971CLOS_0969CLOS_0969
ANAE240017 ANA_0712ANA_0711ANA_0716ANA_0714ANA_0714
AMET293826 AMET_4091AMET_4092AMET_3578AMET_3580AMET_3580
AHYD196024 AHA_1577AHA_3920AHA_2382AHA_0780AHA_3618
AEHR187272 MLG_2233MLG_1972MLG_2840MLG_2840
ADEH290397 ADEH_2646ADEH_0147ADEH_1532ADEH_1530
ACEL351607 ACEL_1112ACEL_1111ACEL_1114ACEL_1114
ABAU360910 BAV3158BAV2659BAV0864BAV0864
ABAC204669 ACID345_2188ACID345_3782ACID345_2544ACID345_2541
AAUR290340 AAUR_2085AAUR_2084AAUR_2088AAUR_2088
AAEO224324 AQ_778AQ_360AQ_1065AQ_1065


Organism features enriched in list (features available for 239 out of the 256 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.934e-65892
Arrangment:Clusters 0.00925661217
Arrangment:Pairs 1.874e-770112
Arrangment:Singles 0.0037882103286
Disease:Bubonic_plague 0.004572166
Disease:Dysentery 0.004572166
Disease:Gastroenteritis 0.00738211013
Disease:Pneumonia 0.00034531112
Disease:Wide_range_of_infections 0.00004781111
Endospores:Yes 6.150e-134653
GC_Content_Range4:0-40 0.003009573213
GC_Content_Range4:40-60 0.0034487106224
GC_Content_Range7:0-30 0.00172521047
GC_Content_Range7:50-60 0.001546257107
GC_Content_Range7:70-100 0.0058946911
Genome_Size_Range5:0-2 2.202e-1820155
Genome_Size_Range5:4-6 1.019e-14118184
Genome_Size_Range9:1-2 3.837e-1220128
Genome_Size_Range9:4-5 6.397e-86396
Genome_Size_Range9:5-6 5.651e-65588
Gram_Stain:Gram_Neg 5.368e-7108333
Gram_Stain:Gram_Pos 4.206e-25115150
Habitat:Host-associated 0.001030868206
Habitat:Multiple 0.002778787178
Habitat:Terrestrial 0.00133472131
Motility:No 0.001185977151
Optimal_temp.:30-37 0.00514031318
Oxygen_Req:Aerobic 5.451e-652185
Oxygen_Req:Facultative 2.103e-15127201
Pathogenic_in:Human 1.404e-6114213
Pathogenic_in:No 0.000030170226
Pathogenic_in:Plant 0.0034973115
Salinity:Non-halophilic 0.002147056106
Shape:Coccus 0.00055484782
Shape:Rod 0.0001165163347
Shape:Sphere 0.0005009119
Shape:Spiral 2.636e-6234



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 159
Effective number of orgs (counting one per cluster within 468 clusters): 132

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CSP78 Caulobacter sp.1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC1
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP376 Bradyrhizobium sp.1
BQUI283165 ncbi Bartonella quintana Toulouse1
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BHEN283166 ncbi Bartonella henselae Houston-11
BCAN483179 ncbi Brucella canis ATCC 233651
BBAC360095 ncbi Bartonella bacilliformis KC5831
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  G6402   EG12146   EG11015   EG10368   EG10367   
XAUT78245 XAUT_3075
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0446
TWHI203267 TW300
TVOL273116
TPEN368408
TPAL243276 TP_0537
TKOD69014
TDEN326298 TMDEN_1754
TACI273075
STOK273063
SSP387093 SUN_2204
SSOL273057
SMAR399550
SACI330779
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_4467
RPAL316057 RPD_4313
RMAS416276
RLEG216596 RL4007
RFEL315456
RETL347834 RHE_CH03496
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PISL384616
PHOR70601
PFUR186497
PCRY335284 PCRYO_0127
PAST100379
PARS340102
PARC259536 PSYC_0118
PAER178306
PABY272844
OTSU357244
OANT439375 OANT_1189
NSP387092
NSEN222891 NSE_0434
NPHA348780
MTHE349307
MTHE187420 MTH1018
MSYN262723 MS53_0486
MSTA339860
MSED399549
MPUL272635 MYPU_4580
MPNE272634
MPEN272633
MMYC272632 MSC_0823
MMOB267748 MMOB4190
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLOT266835 MLR3750
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311 MFL504
MCAP340047 MCAP_0750
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LMES203120 LEUM_0394
LBIF456481 LEPBI_I2080
LBIF355278 LBF_2026
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032 HNE_3179
HMUK485914
HMAR272569
HHEP235279
HBUT415426
HACI382638
FTUL458234 FTA_1886
FTUL418136 FTW_0156
FTUL401614 FTN_1631
FTUL393115 FTF0080
FTUL393011 FTH_1716
FTUL351581 FTL_1780
FRANT TPIA
FPHI484022 FPHI_0977
ERUM302409
ERUM254945
ECHA205920 ECH_0011
ECAN269484
CSUL444179 SMGWSS_257
CSP78 CAUL_0767
CPNE182082 CPB0650
CPNE115713 CPN0624
CPNE115711 CP_0123
CPEL335992
CMUR243161 TC_0792
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHOM360107 CHAB381_0777
CFET360106
CFEL264202 CF0890
CCUR360105
CCON360104 CCC13826_0516
CCAV227941 CCA_00116
CAULO CC3248
CABO218497 CAB115
BXEN266265
BTUR314724 BT0057
BTRI382640 BT_2420
BSUI470137 BSUIS_B1203
BSUI204722 BR_1728
BSP376 BRADO1124
BQUI283165 BQ12000
BOVI236 GBOORF1737
BMEL359391 BAB1_1741
BMEL224914 BMEI0310
BLON206672 BL0705
BHER314723 BH0057
BHEN283166 BH15080
BCAN483179 BCAN_A1766
BBAC360095 BARBAKC583_0138
BABO262698 BRUAB1_1713
AYEL322098
AURANTIMONAS
APHA212042
APER272557
AMAR234826
ALAI441768
AFUL224325
ACAU438753 AZC_0503
ABUT367737 ABU_2132


Organism features enriched in list (features available for 148 out of the 159 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00911891592
Arrangment:Pairs 0.000131114112
Arrangment:Singles 0.001039288286
Disease:Brucellosis 0.001001855
Disease:None 0.0051318758
Disease:Pharyngitis 0.000368578
Disease:Tularemia 0.001001855
Disease:bronchitis_and_pneumonitis 0.000368578
Endospores:No 0.000026574211
GC_Content_Range4:0-40 9.865e-983213
GC_Content_Range4:60-100 2.612e-617145
GC_Content_Range7:0-30 0.00005092447
GC_Content_Range7:30-40 0.000187859166
GC_Content_Range7:50-60 0.007297518107
GC_Content_Range7:60-70 0.000029417134
Genome_Size_Range5:0-2 1.109e-3196155
Genome_Size_Range5:2-4 0.006771839197
Genome_Size_Range5:4-6 2.255e-179184
Genome_Size_Range5:6-10 0.0018984447
Genome_Size_Range9:0-1 3.720e-61827
Genome_Size_Range9:1-2 3.774e-2378128
Genome_Size_Range9:4-5 3.260e-9496
Genome_Size_Range9:5-6 2.519e-7588
Genome_Size_Range9:6-8 0.0040242338
Gram_Stain:Gram_Pos 3.084e-174150
Habitat:Host-associated 0.000182270206
Habitat:Multiple 1.031e-623178
Habitat:Specialized 0.00130672353
Habitat:Terrestrial 0.0052917231
Optimal_temp.:37 0.002681738106
Optimal_temp.:85 0.004028144
Oxygen_Req:Anaerobic 0.004511936102
Oxygen_Req:Facultative 3.654e-727201
Oxygen_Req:Microaerophilic 0.00098111118
Shape:Irregular_coccus 5.378e-81517
Shape:Pleomorphic 0.003942268
Shape:Rod 4.030e-1056347
Shape:Sphere 6.901e-81619
Shape:Spiral 3.246e-62134
Temp._range:Hyperthermophilic 7.589e-71723
Temp._range:Mesophilic 0.0000305103473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5493 (reductive monocarboxylic acid cycle)2431730.4893
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3562100.4200
PWY-5480 (pyruvate fermentation to ethanol I)109930.4140
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121990.4064



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12146   EG11015   EG10368   EG10367   
G64020.9998480.9990990.9985910.999169
EG121460.9990720.9985150.998945
EG110150.9989790.999278
EG103680.999731
EG10367



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PAIRWISE BLAST SCORES:

  G6402   EG12146   EG11015   EG10368   EG10367   
G64020.0f0----
EG12146-0.0f0---
EG11015--0.0f0--
EG10368---0.0f0-
EG10367----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff) (degree of match pw to cand: 0.087, degree of match cand to pw: 0.400, average score: 0.631)
  Genes in pathway or complex:
             0.4253 0.0006 EG10257 (edd) PGLUCONDEHYDRAT-MONOMER (phosphogluconate dehydratase)
             0.7130 0.2474 EG10256 (eda) KDPGALDOL-4OH2OXOGLUTARALDOL-MONOMER (Eda)
             0.5278 0.1035 EG11245 (yggF) EG11245-MONOMER (fructose-1,6-bisphosphatase)
             0.8797 0.6114 EG11239 (ybhA) EG11239-MONOMER (pyridoxal phosphatase / fructose 1,6-bisphosphatase)
             0.4411 0.0813 EG11517 (glpX) EG11517-MONOMER (fructose 1,6-bisphosphatase II)
             0.6379 0.0578 EG10283 (fbp) F16B-MONOMER (fructose-1,6-bisphosphatase monomer)
             0.3396 0.0034 EG10759 (ppsA) PEPSYNTH-MONOMER (phosphoenolpyruvate synthetase)
             0.6659 0.1298 EG10702 (pgi) PGLUCISOM (Pgi)
             0.9148 0.5953 EG10699 (pfkA) 6PFK-1-MONOMER (6-phosphofructokinase-1 monomer)
             0.4835 0.1386 EG10700 (pfkB) 6PFK-2-MONOMER (6-phosphofructokinase-2 monomer)
             0.4631 0.1757 G7129 (fbaB) FRUCBISALD-CLASSI-MONOMER (fructose bisphosphate aldolase monomer)
             0.3965 0.0474 EG10282 (fbaA) FRUCTBISALD-CLASSII-MONOMER (fructose bisphosphate aldolase monomer)
   *in cand* 0.9993 0.9990 EG11015 (tpiA) TPI-MONOMER (triose phosphate isomerase monomer)
   *in cand* 0.9994 0.9989 EG10367 (gapA) GAPDH-A-MONOMER (glyceraldehyde 3-phosphate dehydrogenase-A monomer)
             0.9992 0.9983 EG10703 (pgk) PGK (phosphoglycerate kinase)
             0.9962 0.9904 EG12296 (gpmM) PGMI-MONOMER (phosphoglycerate mutase, cofactor independent)
             0.4677 0.1261 EG12164 (ytjC) PGAM2-MONOMER (phosphoglycerate mutase 2)
             0.4141 0.0883 EG11699 (gpmA) GPMA-MONOMER (phosphoglyceromutase 1 monomer)
             0.9962 0.9920 EG10258 (eno) ENOLASE-MONOMER (Eno)
             0.9820 0.9251 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.9601 0.8117 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.9891 0.9791 EG11221 (zwf) GLU6PDEHYDROG-MONOMER (glucose 6-phosphate-1-dehydrogenase)
             0.6061 0.1364 G6397 (pgl) 6PGLUCONOLACT-MONOMER (6-phosphogluconolactonase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9985 EG10368 (epd) ERYTH4PDEHYDROG-MONOMER (Epd)
   *in cand* 0.9993 0.9985 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9993 0.9986 G6402 (ybhK) G6402-MONOMER (predicted transferase with NAD(P)-binding Rossmann-fold domain)

- GLYCOLYSIS (glycolysis I) (degree of match pw to cand: 0.105, degree of match cand to pw: 0.400, average score: 0.638)
  Genes in pathway or complex:
             0.9601 0.8117 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.9820 0.9251 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.9962 0.9920 EG10258 (eno) ENOLASE-MONOMER (Eno)
             0.4141 0.0883 EG11699 (gpmA) GPMA-MONOMER (phosphoglyceromutase 1 monomer)
             0.4677 0.1261 EG12164 (ytjC) PGAM2-MONOMER (phosphoglycerate mutase 2)
             0.9962 0.9904 EG12296 (gpmM) PGMI-MONOMER (phosphoglycerate mutase, cofactor independent)
             0.9992 0.9983 EG10703 (pgk) PGK (phosphoglycerate kinase)
   *in cand* 0.9994 0.9989 EG10367 (gapA) GAPDH-A-MONOMER (glyceraldehyde 3-phosphate dehydrogenase-A monomer)
   *in cand* 0.9993 0.9990 EG11015 (tpiA) TPI-MONOMER (triose phosphate isomerase monomer)
             0.3965 0.0474 EG10282 (fbaA) FRUCTBISALD-CLASSII-MONOMER (fructose bisphosphate aldolase monomer)
             0.4631 0.1757 G7129 (fbaB) FRUCBISALD-CLASSI-MONOMER (fructose bisphosphate aldolase monomer)
             0.4835 0.1386 EG10700 (pfkB) 6PFK-2-MONOMER (6-phosphofructokinase-2 monomer)
             0.9148 0.5953 EG10699 (pfkA) 6PFK-1-MONOMER (6-phosphofructokinase-1 monomer)
             0.6659 0.1298 EG10702 (pgi) PGLUCISOM (Pgi)
             0.3396 0.0034 EG10759 (ppsA) PEPSYNTH-MONOMER (phosphoenolpyruvate synthetase)
             0.6379 0.0578 EG10283 (fbp) F16B-MONOMER (fructose-1,6-bisphosphatase monomer)
             0.4411 0.0813 EG11517 (glpX) EG11517-MONOMER (fructose 1,6-bisphosphatase II)
             0.8797 0.6114 EG11239 (ybhA) EG11239-MONOMER (pyridoxal phosphatase / fructose 1,6-bisphosphatase)
             0.5278 0.1035 EG11245 (yggF) EG11245-MONOMER (fructose-1,6-bisphosphatase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9985 EG10368 (epd) ERYTH4PDEHYDROG-MONOMER (Epd)
   *in cand* 0.9993 0.9985 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9993 0.9986 G6402 (ybhK) G6402-MONOMER (predicted transferase with NAD(P)-binding Rossmann-fold domain)

- GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass) (degree of match pw to cand: 0.049, degree of match cand to pw: 0.400, average score: 0.600)
  Genes in pathway or complex:
             0.6773 0.2160 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.2021 0.0510 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.5923 0.0928 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.6261 0.1326 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.3955 0.0029 EG10981 (sucC) SUCCCOASYN-BETA (succinyl-CoA synthetase, β subunit)
             0.4639 0.0039 EG10982 (sucD) SUCCCOASYN-ALPHA (succinyl-CoA synthetase, α subunit)
             0.6272 0.2425 EG10980 (sucB) E2O-MONOMER (SucB)
             0.4257 0.0744 EG10979 (sucA) E1O-MONOMER (subunit of E1(0) component of 2-oxoglutarate dehydrogenase)
             0.6354 0.0513 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.6485 0.0770 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.9310 0.8105 EG11325 (acnA) ACONITASE-MONOMER (aconitate hydratase 1)
             0.5845 0.2056 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.5163 0.0362 EG10934 (sdhD) SDH-MEMB2 (succinate dehydrogenase membrane protein)
             0.5625 0.0458 EG10933 (sdhC) SDH-MEMB1 (succinate dehydrogenase membrane protein)
             0.5368 0.0811 EG10932 (sdhB) SDH-FE-S (succinate dehydrogenase iron-sulfur protein)
             0.5293 0.0759 EG10931 (sdhA) SDH-FLAVO (succinate dehydrogenase flavoprotein)
             0.5473 0.2183 EG12069 (mqo) EG12069-MONOMER (malate:quinone oxidoreductase)
             0.4642 0.0815 EG10023 (aceB) MALATE-SYNTHASE (malate synthase A)
             0.3283 0.0652 EG10022 (aceA) ISOCIT-LYASE-MONOMER (isocitrate lyase monomer)
             0.5278 0.1035 EG11245 (yggF) EG11245-MONOMER (fructose-1,6-bisphosphatase)
             0.8797 0.6114 EG11239 (ybhA) EG11239-MONOMER (pyridoxal phosphatase / fructose 1,6-bisphosphatase)
             0.4411 0.0813 EG11517 (glpX) EG11517-MONOMER (fructose 1,6-bisphosphatase II)
             0.6379 0.0578 EG10283 (fbp) F16B-MONOMER (fructose-1,6-bisphosphatase monomer)
             0.3396 0.0034 EG10759 (ppsA) PEPSYNTH-MONOMER (phosphoenolpyruvate synthetase)
             0.6659 0.1298 EG10702 (pgi) PGLUCISOM (Pgi)
             0.9148 0.5953 EG10699 (pfkA) 6PFK-1-MONOMER (6-phosphofructokinase-1 monomer)
             0.4835 0.1386 EG10700 (pfkB) 6PFK-2-MONOMER (6-phosphofructokinase-2 monomer)
             0.4631 0.1757 G7129 (fbaB) FRUCBISALD-CLASSI-MONOMER (fructose bisphosphate aldolase monomer)
             0.3965 0.0474 EG10282 (fbaA) FRUCTBISALD-CLASSII-MONOMER (fructose bisphosphate aldolase monomer)
   *in cand* 0.9993 0.9990 EG11015 (tpiA) TPI-MONOMER (triose phosphate isomerase monomer)
   *in cand* 0.9994 0.9989 EG10367 (gapA) GAPDH-A-MONOMER (glyceraldehyde 3-phosphate dehydrogenase-A monomer)
             0.9992 0.9983 EG10703 (pgk) PGK (phosphoglycerate kinase)
             0.9962 0.9904 EG12296 (gpmM) PGMI-MONOMER (phosphoglycerate mutase, cofactor independent)
             0.4677 0.1261 EG12164 (ytjC) PGAM2-MONOMER (phosphoglycerate mutase 2)
             0.4141 0.0883 EG11699 (gpmA) GPMA-MONOMER (phosphoglyceromutase 1 monomer)
             0.9962 0.9920 EG10258 (eno) ENOLASE-MONOMER (Eno)
             0.9820 0.9251 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.9601 0.8117 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4387 0.1847 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.6914 0.4055 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
             0.9035 0.7672 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9985 EG10368 (epd) ERYTH4PDEHYDROG-MONOMER (Epd)
   *in cand* 0.9993 0.9985 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9993 0.9986 G6402 (ybhK) G6402-MONOMER (predicted transferase with NAD(P)-binding Rossmann-fold domain)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6402 (centered at G6402)
EG12146 (centered at EG12146)
EG11015 (centered at EG11015)
EG10368 (centered at EG10368)
EG10367 (centered at EG10367)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6402   EG12146   EG11015   EG10368   EG10367   
280/623381/623408/623335/623349/623
AAEO224324:0:Tyes294-0490490
AAUR290340:2:Tyes10-44
AAVE397945:0:Tyes-23020-3273
ABAC204669:0:Tyes01602357-354
ABAU360910:0:Tyes-2298179200
ABOR393595:0:Tyes-23501485-
ABUT367737:0:Tyes----0
ACAU438753:0:Tyes---0-
ACEL351607:0:Tyes10-33
ACRY349163:8:Tyes-0-772-
ADEH290397:0:Tyes2522013931391-
AEHR187272:0:Tyes-2610866866
AFER243159:0:Tyes-03792952-
AHYD196024:0:Tyes7803027157302756
AMAR329726:9:Tyes3663---0
AMET293826:0:Tyes472473022
ANAE240017:0:Tyes10533
AORE350688:0:Tyes10382380380
APLE416269:0:Tyes42801634-101
APLE434271:0:Tno39201647-103
ASAL382245:5:Tyes2372018503064430
ASP1667:3:Tyes10-44
ASP232721:2:Tyes-052-2978
ASP62928:0:Tyes-010252485-
ASP62977:0:Tyes-1666-0-
ASP76114:2:Tyes-149821970-
AVAR240292:3:Tyes0--2212379
BABO262698:1:Tno---0-
BAFZ390236:2:Fyes--0-2
BAMB339670:3:Tno-2370179900
BAMB398577:3:Tno-2178163000
BAMY326423:0:Tyes5925935220524
BANT260799:0:Tno5435445260528
BANT261594:2:Tno5285295120514
BANT568206:2:Tyes5455465290531
BANT592021:2:Tno5435445270529
BAPH198804:0:Tyes--9-0
BAPH372461:0:Tyes--7-0
BBAC264462:0:Tyes---00
BBAC360095:0:Tyes---0-
BBRO257310:0:Tyes-316725180-
BBUR224326:21:Fno--0-2
BCAN483179:1:Tno---0-
BCEN331271:2:Tno-2051150700
BCEN331272:3:Tyes-2153161000
BCER226900:1:Tyes555556-0540
BCER288681:0:Tno5415425190521
BCER315749:1:Tyes4074083900392
BCER405917:1:Tyes5245255070509
BCER572264:1:Tno5565575230525
BCIC186490:0:Tyes-0118-372
BCLA66692:0:Tyes3293303130315
BFRA272559:1:Tyes--2781-0
BFRA295405:0:Tno--3025-0
BGAR290434:2:Fyes--0-2
BHAL272558:0:Tyes4204214100412
BHEN283166:0:Tyes---0-
BHER314723:0:Fyes----0
BJAP224911:0:Fyes--329700
BLIC279010:0:Tyes6396405780580
BLON206672:0:Tyes-0---
BMAL243160:1:Tno-11590576576
BMAL320388:1:Tno-01030303303
BMAL320389:1:Tyes-2472028462846
BMEL224914:1:Tno---0-
BMEL359391:1:Tno---0-
BOVI236:1:Tyes---0-
BPAR257311:0:Tno-274621360-
BPER257313:0:Tyes-093274-
BPET94624:0:Tyes-0119532223222
BPSE272560:1:Tyes-068024382438
BPSE320372:1:Tno-070928162816
BPSE320373:1:Tno-069027482748
BPUM315750:0:Tyes5875885270529
BQUI283165:0:Tyes---0-
BSP107806:2:Tyes--9-0
BSP36773:2:Tyes-2445189500
BSP376:0:Tyes---0-
BSUB:0:Tyes6176185310533
BSUI204722:1:Tyes---0-
BSUI470137:0:Tno---0-
BTHA271848:1:Tno-0574705705
BTHE226186:0:Tyes-02339-2677
BTHU281309:1:Tno5135144970499
BTHU412694:1:Tno4834844660468
BTRI382640:1:Tyes---0-
BTUR314724:0:Fyes----0
BVIE269482:7:Tyes-2267171100
BWEI315730:4:Tyes5495505300532
CABO218497:0:Tyes----0
CACE272562:1:Tyes10199--
CAULO:0:Tyes---0-
CBEI290402:0:Tyes417841790--
CBLO203907:0:Tyes--163-0
CBLO291272:0:Tno--168-0
CBOT36826:1:Tno3116311720863
CBOT441770:0:Tyes3075307620845
CBOT441771:0:Tno2935293620844
CBOT441772:1:Tno3151315220865
CBOT498213:1:Tno3159316020875
CBOT508765:1:Tyes2772780--
CBOT515621:2:Tyes3309331020847
CBOT536232:0:Tno3417341820937
CBUR227377:1:Tyes--0330330
CBUR360115:1:Tno--0351351
CBUR434922:2:Tno--3060-
CCAV227941:1:Tyes----0
CCHL340177:0:Tyes--0925925
CCON360104:2:Tyes----0
CDES477974:0:Tyes-04539-
CDIF272563:1:Tyes16481649141800
CDIP257309:0:Tyes23-00
CEFF196164:0:Fyes5602-
CFEL264202:1:Tyes----0
CGLU196627:0:Tyes4502-
CHOM360107:1:Tyes----0
CHUT269798:0:Tyes--297602687
CHYD246194:0:Tyes101088
CJAP155077:0:Tyes-1429129100
CJEI306537:0:Tyes23-00
CKLU431943:1:Tyes20782079190700
CMIC31964:2:Tyes-3-00
CMIC443906:2:Tyes-5022
CMUR243161:1:Tyes----0
CNOV386415:0:Tyes10127--
CPER195102:1:Tyes10953-955
CPER195103:0:Tno-01152-1154
CPER289380:3:Tyes10954-956
CPHY357809:0:Tyes-02520--
CPNE115711:1:Tyes----0
CPNE115713:0:Tno----0
CPNE138677:0:Tno--454-0
CPNE182082:0:Tno----0
CPRO264201:0:Fyes--376-0
CPSY167879:0:Tyes4812134106214750
CRUT413404:0:Tyes--953-0
CSAL290398:0:Tyes-191027620-
CSP501479:6:Fyes-0---
CSP501479:8:Fyes--080-
CSP78:2:Tyes---0-
CSUL444179:0:Tyes----0
CTEP194439:0:Tyes---00
CTET212717:0:Tyes19421943200
CTRA471472:0:Tyes--0-190
CTRA471473:0:Tno--0-190
CVES412965:0:Tyes--868-0
CVIO243365:0:Tyes-3229-0380
DARO159087:0:Tyes-089635543586
DDES207559:0:Tyes-0-1998-
DETH243164:0:Tyes--145-0
DGEO319795:1:Tyes01-406406
DHAF138119:0:Tyes33553356335100
DNOD246195:0:Tyes-0402--
DOLE96561:0:Tyes-4017161
DPSY177439:2:Tyes2171-01928-
DRAD243230:3:Tyes9291-00
DRED349161:0:Tyes29542955202893
DSHI398580:5:Tyes-0-1559-
DSP216389:0:Tyes--11200
DSP255470:0:Tno--13100
DVUL882:1:Tyes-1063-0-
ECAR218491:0:Tyes25410404536672067
ECHA205920:0:Tyes---0-
ECOL199310:0:Tno03040393425891287
ECOL316407:0:Tno02427257921561016
ECOL331111:6:Tno02741347423151121
ECOL362663:0:Tno0250133232122926
ECOL364106:1:Tno02859370825281196
ECOL405955:2:Tyes02585329522361002
ECOL409438:6:Tyes02696343723941123
ECOL413997:0:Tno0233030762017987
ECOL439855:4:Tno0262134482208591
ECOL469008:0:Tno2296035652761338
ECOL481805:0:Tno2369036212871367
ECOL585034:0:Tno02508325121981008
ECOL585035:0:Tno0269134352319988
ECOL585055:0:Tno02771352923651120
ECOL585056:2:Tno02764351523631144
ECOL585057:0:Tno0294923242595527
ECOL585397:0:Tno03032377225701184
ECOL83334:0:Tno03296408230051657
ECOLI:0:Tno02484320722071031
ECOO157:0:Tno03314411230231704
EFAE226185:3:Tyes10--1134
EFER585054:1:Tyes10231890254015610
ELIT314225:0:Tyes-0-631631
ESP42895:1:Tyes0238328042083405
FALN326424:0:Tyes34-00
FJOH376686:0:Tyes--0-1079
FMAG334413:1:Tyes2922930-2
FNOD381764:0:Tyes441442--0
FNUC190304:0:Tyes-0277--
FPHI484022:1:Tyes--0--
FRANT:0:Tno--0--
FSP106370:0:Tyes10-23763
FSP1855:0:Tyes10533
FSUC59374:0:Tyes--2349-0
FTUL351581:0:Tno--0--
FTUL393011:0:Tno--0--
FTUL393115:0:Tyes--0--
FTUL401614:0:Tyes--0--
FTUL418136:0:Tno--0--
FTUL458234:0:Tno--0--
GBET391165:0:Tyes-845150-
GFOR411154:0:Tyes--0-1698
GKAU235909:1:Tyes3573583470349
GMET269799:1:Tyes-0675673673
GOXY290633:5:Tyes-307-0-
GSUL243231:0:Tyes-254011
GTHE420246:1:Tyes3633643540356
GURA351605:0:Tyes-906022
GVIO251221:0:Tyes36793678-02832
HARS204773:0:Tyes-192893300
HAUR316274:2:Tyes0-1733-4528
HCHE349521:0:Tyes-39370289-
HDUC233412:0:Tyes-0159-619
HHAL349124:0:Tyes-121885000
HINF281310:0:Tyes-1188739-0
HINF374930:0:Tyes-521949-0
HINF71421:0:Tno-1116658-0
HMOD498761:0:Tyes459329300
HNEP81032:0:Tyes---0-
HSOM205914:1:Tyes0284690-570
HSOM228400:0:Tno96411900-118
ILOI283942:0:Tyes31805891861-
JSP290400:1:Tyes-012011163-
JSP375286:0:Tyes-231464000
KPNE272620:2:Tyes49242707311824720
KRAD266940:2:Fyes10-33
LACI272621:0:Tyes1010--
LBIF355278:2:Tyes----0
LBIF456481:2:Tno----0
LBOR355276:1:Tyes--0-2
LBOR355277:1:Tno--0-2
LBRE387344:2:Tyes10---
LCAS321967:1:Tyes1010--
LCHO395495:0:Tyes386432971288-0
LDEL321956:0:Tyes1010--
LDEL390333:0:Tyes1010--
LGAS324831:0:Tyes780--
LHEL405566:0:Tyes109--
LINN272626:1:Tno66670-2
LINT189518:1:Tyes--0-8
LINT267671:1:Tno--4-0
LINT363253:3:Tyes1870---
LJOH257314:0:Tyes109--
LLAC272622:5:Tyes10191-1425
LLAC272623:0:Tyes10173-1285
LMES203120:1:Tyes0----
LMON169963:0:Tno17180-2
LMON265669:0:Tyes15160-2
LPLA220668:0:Tyes1011--
LPNE272624:0:Tno--26460-
LPNE297245:1:Fno--25720-
LPNE297246:1:Fyes--26920-
LPNE400673:0:Tno--28580-
LREU557436:0:Tyes10---
LSAK314315:0:Tyes1084--
LSPH444177:1:Tyes10171515
LWEL386043:0:Tyes16170-3
LXYL281090:0:Tyes-0--3
MABS561007:1:Tyes56022
MAER449447:0:Tyes0--24033395
MAQU351348:2:Tyes-0630320-
MAVI243243:0:Tyes1920022
MBOV233413:0:Tno1017-15
MBOV410289:0:Tno1017-15
MCAP243233:0:Tyes-56018181818
MCAP340047:0:Tyes--0--
MEXT419610:0:Tyes--229500
MFLA265072:0:Tyes-01915-2099
MFLO265311:0:Tyes--0--
MGIL350054:3:Tyes56022
MLEP272631:0:Tyes10-55
MLOT266835:2:Tyes---0-
MMAG342108:0:Tyes-38841307-0
MMAR394221:0:Tyes--01186-
MMOB267748:0:Tyes--0--
MMYC272632:0:Tyes--0--
MPET420662:1:Tyes-3069114100
MPUL272635:0:Tyes--0--
MSME246196:0:Tyes10755
MSP164756:1:Tno101088
MSP164757:0:Tno10977
MSP189918:2:Tyes10866
MSP266779:3:Tyes---00
MSP400668:0:Tyes0-408471-
MSP409:2:Tyes--0566566
MSUC221988:0:Tyes72914440-1470
MSYN262723:0:Tyes--0--
MTBCDC:0:Tno1018-16
MTBRV:0:Tno1017-15
MTHE187420:0:Tyes0----
MTHE264732:0:Tyes10644
MTUB336982:0:Tno1016-14
MTUB419947:0:Tyes1017-15
MVAN350058:0:Tyes10755
MXAN246197:0:Tyes39036240--
NARO279238:0:Tyes-9575600
NEUR228410:0:Tyes-15481475-0
NEUT335283:2:Tyes-120957501229
NFAR247156:2:Tyes560-2
NGON242231:0:Tyes-0-1333-
NHAM323097:2:Tyes--01741-
NMEN122586:0:Tno-514-0-
NMEN122587:0:Tyes-842-0-
NMEN272831:0:Tno-452-0-
NMEN374833:0:Tno-0-1225-
NMUL323848:3:Tyes-01002-305
NOCE323261:1:Tyes-2280238238
NSEN222891:0:Tyes---0-
NSP103690:6:Tyes0--2794270
NSP35761:1:Tyes105-3
NWIN323098:0:Tyes--0908-
OANT439375:5:Tyes---0-
OCAR504832:0:Tyes---00
OIHE221109:0:Tyes3233022
PACN267747:0:Tyes10533
PAER208963:0:Tyes-285732730-
PAER208964:0:Tno-396442590-
PARC259536:0:Tyes-0---
PATL342610:0:Tyes11060100727881068
PCAR338963:0:Tyes-615200
PCRY335284:1:Tyes-0---
PDIS435591:0:Tyes-35052394-0
PENT384676:0:Tyes-28703986-
PFLU205922:0:Tyes-8204553-
PFLU216595:1:Tyes-042164655-
PFLU220664:0:Tyes-6804856-
PGIN242619:0:Tyes--0-1303
PHAL326442:1:Tyes-19972760-
PING357804:0:Tyes11310443860550
PINT246198:1:Tyes-7668-0
PLUM243265:0:Fyes5733132389501642
PLUT319225:0:Tyes--02121
PMAR146891:0:Tyes292--00
PMAR167539:0:Tyes305--0-
PMAR167540:0:Tyes271--0-
PMAR167542:0:Tyes309--0-
PMAR167546:0:Tyes292--0-
PMAR167555:0:Tyes354--0-
PMAR59920:0:Tno312--0-
PMAR74546:0:Tyes276--00
PMAR74547:0:Tyes1905--0-
PMAR93060:0:Tyes298--0-
PMEN399739:0:Tyes-41131940-
PMOB403833:0:Tyes101283-1284
PMUL272843:1:Tyes45701142-755
PNAP365044:8:Tyes-0521-3167
PPEN278197:0:Tyes1010--
PPRO298386:2:Tyes8863014028882359
PPUT160488:0:Tno-037554004-
PPUT351746:0:Tyes-036173875-
PPUT76869:0:Tno-037974094-
PRUM264731:0:Tyes-01580--
PSP117:0:Tyes--257600
PSP296591:2:Tyes-01953-3495
PSP312153:0:Tyes-17088400-
PSP56811:2:Tyes-20070--
PSTU379731:0:Tyes-022712874-
PSYR205918:0:Tyes-036648-
PSYR223283:2:Tyes-402540630-
PTHE370438:0:Tyes17361737172917310
RALB246199:0:Tyes-01368--
RCAS383372:0:Tyes1703-02265-
RDEN375451:4:Tyes-0-1405-
RETL347834:5:Tyes---0-
REUT264198:3:Tyes-0611-2511
REUT381666:1:Tyes---0-
REUT381666:2:Tyes-0658-2690
RFER338969:1:Tyes-73457203192
RLEG216596:6:Tyes---0-
RMET266264:2:Tyes-01220-2669
RPAL258594:0:Tyes--19480-
RPAL316055:0:Tyes--02116-
RPAL316056:0:Tyes--02306-
RPAL316057:0:Tyes---0-
RPAL316058:0:Tyes---0-
RPOM246200:1:Tyes-12-0-
RRUB269796:1:Tyes-321516620-
RSAL288705:0:Tyes34-00
RSOL267608:1:Tyes-01700-2391
RSP101510:3:Fyes10-33
RSP357808:0:Tyes0-1161--
RSPH272943:4:Tyes-02691304-
RSPH349101:1:Tno---0-
RSPH349101:2:Tno-0285--
RSPH349102:5:Tyes-220101035-
RXYL266117:0:Tyes460--
SACI56780:0:Tyes-0--1501
SAGA205921:0:Tno10198-1078
SAGA208435:0:Tno10225-1208
SAGA211110:0:Tyes10194-1211
SALA317655:1:Tyes-746-00
SARE391037:0:Tyes45022
SAUR158878:1:Tno1010925-
SAUR158879:1:Tno1010828-
SAUR196620:0:Tno1010908-
SAUR273036:0:Tno1012808-
SAUR282458:0:Tno1011924-
SAUR282459:0:Tno1010893-
SAUR359786:1:Tno1010--
SAUR359787:1:Tno109--
SAUR367830:3:Tno109877-
SAUR418127:0:Tyes1010916-
SAUR426430:0:Tno1011852-
SAUR93061:0:Fno1010958-
SAUR93062:1:Tno1010886-
SAVE227882:1:Fyes10644
SBAL399599:3:Tyes1522027793024-
SBAL402882:1:Tno1494026582921-
SBOY300268:1:Tyes0236930942263606
SCO:2:Fyes67022
SDEG203122:0:Tyes-182113590-
SDEN318161:0:Tyes15130523607-
SDYS300267:1:Tyes0240828112196632
SELO269084:0:Tyes0--1250141
SENT209261:0:Tno8721978227317380
SENT220341:0:Tno0239926942161881
SENT295319:0:Tno3811578227913350
SENT321314:2:Tno0249832212245509
SENT454169:2:Tno0259933572295478
SEPI176279:1:Tyes1011--
SEPI176280:0:Tno1012--
SERY405948:0:Tyes106-4
SFLE198214:0:Tyes0240031422078681
SFLE373384:0:Tno0234126642093641
SFUM335543:0:Tyes0103110241026-
SGLO343509:3:Tyes73402030-1182
SGOR29390:0:Tyes730729538-0
SHAE279808:0:Tyes13140--
SHAL458817:0:Tyes1423294123680-
SHIGELLA:0:Tno0233626002023700
SLAC55218:1:Fyes-0-1091-
SLOI323850:0:Tyes1280263921410-
SMED366394:3:Tyes--01561-
SMEL266834:2:Tyes---00
SMUT210007:0:Tyes869870327-0
SONE211586:1:Tyes139729852660-
SPEA398579:0:Tno1495-23700-
SPNE1313:0:Tyes019-497
SPNE170187:0:Tyes0110-490
SPNE171101:0:Tno019-440
SPNE487213:0:Tno019-443
SPNE487214:0:Tno019-445
SPNE488221:0:Tno019-447
SPRO399741:1:Tyes03080352626541418
SPYO160490:0:Tno273272244-0
SPYO186103:0:Tno346345316-0
SPYO193567:0:Tno120712081237-0
SPYO198466:0:Tno262261232-0
SPYO286636:0:Tno301300271-0
SPYO293653:0:Tno309308278-0
SPYO319701:0:Tyes294293264-0
SPYO370551:0:Tno298297267-0
SPYO370552:0:Tno303302272-0
SPYO370553:0:Tno301300271-0
SPYO370554:0:Tyes332331302-0
SRUB309807:1:Tyes---00
SSAP342451:2:Tyes38390--
SSED425104:0:Tyes156002765156-
SSON300269:1:Tyes0246731562204595
SSP1131:0:Tyes177--00
SSP1148:0:Tyes1091-115919190
SSP292414:2:Tyes22452055-0-
SSP321327:0:Tyes8528533622900
SSP321332:0:Tyes101136695427
SSP387093:0:Tyes----0
SSP644076:5:Fyes--0--
SSP644076:6:Fyes-0---
SSP644076:7:Fyes---0-
SSP64471:0:Tyes213--0817
SSP84588:0:Tyes184---0
SSP94122:1:Tyes150103632760-
SSUI391295:0:Tyes482481392-0
SSUI391296:0:Tyes480479385-0
STHE264199:0:Tyes3103090-1189
STHE292459:0:Tyes105820511521
STHE299768:0:Tno3363350-1218
STHE322159:2:Tyes3103090-1097
STRO369723:0:Tyes45022
STYP99287:1:Tyes0250332552251482
SWOL335541:0:Tyes10-1010
TCRU317025:0:Tyes--585-0
TDEN243275:0:Tyes--0-251
TDEN292415:0:Tyes-3771001-0
TDEN326298:0:Tyes----0
TELO197221:0:Tyes1939--14470
TERY203124:0:Tyes0--1652657
TFUS269800:0:Tyes23-00
TLET416591:0:Tyes01---
TMAR243274:0:Tyes1001-100
TPAL243276:0:Tyes--0--
TPET390874:0:Tno778779022
TPSE340099:0:Tyes10646262
TROS309801:1:Tyes0-311
TSP1755:0:Tyes10128126126
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