CANDIDATE ID: 670

CANDIDATE ID: 670

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9945140e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11967 (flgK) (b1082)
   Products of gene:
     - EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)
     - CPLX0-7452 (Flagellum)

- EG11545 (flgL) (b1083)
   Products of gene:
     - EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
     - CPLX0-7452 (Flagellum)

- EG11447 (csrA) (b2696)
   Products of gene:
     - EG11447-MONOMER (carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism)
       Regulatees:
        TU00470 (glgCAP)
        TU00122 (glgCAP)
        TU00469 (glgCAP)
        TU0-13308 (ydeH)
        TU0-8682 (ycdT)
        TU0-8471 (pgaABCD)
     - CPLX0-1041 (CsrA complex with CsrB RNA)

- EG11388 (fliS) (b1925)
   Products of gene:
     - EG11388-MONOMER (flagellar biosynthesis protein FliS)

- EG10321 (fliC) (b1923)
   Products of gene:
     - EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
     - CPLX0-7452 (Flagellum)



Back to top


ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 224
Effective number of orgs (counting one per cluster within 468 clusters): 158

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
WSUC273121 ncbi Wolinella succinogenes DSM 17405
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP28240 Thermotoga sp.5
TSP1755 Thermoanaerobacter sp.5
TROS309801 ncbi Thermomicrobium roseum DSM 51595
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TPET390874 ncbi Thermotoga petrophila RKU-15
TPAL243276 ncbi Treponema pallidum pallidum Nichols5
TMAR243274 ncbi Thermotoga maritima MSB85
TLET416591 ncbi Thermotoga lettingae TMO5
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12514
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TDEN243275 ncbi Treponema denticola ATCC 354055
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-45
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB5
RMET266264 ncbi Ralstonia metallidurans CH344
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP117 Pirellula sp.4
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PMOB403833 ncbi Petrotoga mobilis SJ955
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
NSP387092 ncbi Nitratiruptor sp. SB155-24
NSP35761 Nocardioides sp.5
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSP400668 ncbi Marinomonas sp. MWYL15
MPET420662 ncbi Methylibium petroleiphilum PM14
MFLA265072 ncbi Methylobacillus flagellatus KT4
MAQU351348 ncbi Marinobacter aquaeolei VT85
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-005
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1305
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566015
LCHO395495 ncbi Leptothrix cholodnii SP-64
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1975
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5505
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)4
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)4
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HPYL85963 ncbi Helicobacter pylori J994
HPYL357544 ncbi Helicobacter pylori HPAG14
HPY ncbi Helicobacter pylori 266954
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HHEP235279 ncbi Helicobacter hepaticus ATCC 514494
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans4
HACI382638 ncbi Helicobacter acinonychis Sheeba4
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B15
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DRED349161 ncbi Desulfotomaculum reducens MI-15
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E884
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPHY357809 ncbi Clostridium phytofermentans ISDg5
CNOV386415 ncbi Clostridium novyi NT5
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CJEJ407148 ncbi Campylobacter jejuni jejuni 811164
CJEJ360109 ncbi Campylobacter jejuni doylei 269.974
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1764
CJEJ195099 ncbi Campylobacter jejuni RM12214
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111684
CJAP155077 Cellvibrio japonicus5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CFET360106 ncbi Campylobacter fetus fetus 82-404
CDIF272563 ncbi Clostridium difficile 6305
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CCUR360105 ncbi Campylobacter curvus 525.925
CCON360104 ncbi Campylobacter concisus 138264
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1685
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BHAL272558 ncbi Bacillus halodurans C-1255
BGAR290434 ncbi Borrelia garinii PBi4
BCLA66692 ncbi Bacillus clausii KSM-K165
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBUR224326 ncbi Borrelia burgdorferi B314
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BAFZ390236 ncbi Borrelia afzelii PKo4
ASP62928 ncbi Azoarcus sp. BH724
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG11967   EG11545   EG11447   EG11388   EG10321   
YPSE349747 YPSIP31758_2314YPSIP31758_2313YPSIP31758_3237YPSIP31758_2284YPSIP31758_2281
YPSE273123 YPTB1681YPTB1682YPTB0826YPTB1712YPTB1714
YPES386656 YPDSF_1316YPDSF_1315YPDSF_3057YPDSF_1286YPDSF_1284
YPES377628 YPN_2316YPN_2315YPN_0790YPN_2283YPN_2281
YPES360102 YPA_1183YPA_1184YPA_1216YPA_1218
YPES349746 YPANGOLA_A2007YPANGOLA_A2009YPANGOLA_A2021YPANGOLA_A2023
YPES214092 YPO1808YPO1809YPO3304YPO1840YPO1842
YPES187410 Y2501Y2499Y0884Y2467Y2465
YENT393305 YE2551YE2550YE0835YE2525YE2522
XORY360094 XOOORF_2811XOOORF_2812XOOORF_1730XOOORF_2815XOOORF_2813
XORY342109 XOO2437XOO2438XOO2790XOO2441XOO2439
XORY291331 XOO2579XOO2580XOO2938XOO2583XOO2581
XCAM487884 XCC-B100_2241XCC-B100_2240XCC-B100_2534XCC-B100_2236XCC-B100_2239
XCAM316273 XCAORF_2222XCAORF_2221XCAORF_1963XCAORF_2217XCAORF_2219
XCAM314565 XC_2243XC_2244XC_2506XC_2247XC_2245
XCAM190485 XCC1943XCC1942XCC1725XCC1939XCC1941
XAXO190486 XAC1977XAC1976XAC1743XAC1973XAC1975
WSUC273121 WS0259WS0498WS0879WS0151WS2198
VVUL216895 VV1_0217VV1_0216VV1_1595VV1_1930VV1_1926
VVUL196600 VV0969VV0970VV2801VV2487VV2491
VPAR223926 VP0785VPA0274VP2546VP2254VP2259
VFIS312309 VF1868VF1867VF0538VF1858VF1866
VEIS391735 VEIS_0560VEIS_0559VEIS_1110VEIS_4397
VCHO345073 VC0395_A1783VC0395_A1782VC0395_A0075VC0395_A1722VC0395_A1727
VCHO VC2191VC2190VC0548VC2138VC2143
TTUR377629 TERTU_1234TERTU_1235TERTU_2809TERTU_1319TERTU_1237
TTEN273068 TTE0494TTE0495TTE0498TTE0506TTE0499
TSP28240 TRQ2_0864TRQ2_0865TRQ2_0697TRQ2_1640TRQ2_0168
TSP1755 TETH514_0451TETH514_0452TETH514_0455TETH514_0465TETH514_0456
TROS309801 TRD_A0048TRD_A0049TRD_A0051TRD_A0221TRD_A0208
TPSE340099 TETH39_1784TETH39_1783TETH39_1780TETH39_1770TETH39_1779
TPET390874 TPET_0841TPET_0842TPET_0673TPET_1574TPET_0170
TPAL243276 TP_0660TP_0659TP_0657TP_0943TP_0792
TMAR243274 TM_0083TM_0082TM_0251TM_1179TM_0758
TLET416591 TLET_0672TLET_0671TLET_0669TLET_1994TLET_0257
TDEN326298 TMDEN_0566TMDEN_1037TMDEN_0439TMDEN_0203
TDEN292415 TBD_1628TBD_1627TBD_1593TBD_1590
TDEN243275 TDE_2352TDE_2353TDE_2355TDE_0119TDE_1004
TCRU317025 TCR_1465TCR_1464TCR_1588TCR_1448TCR_1453
SWOL335541 SWOL_0192SWOL_0193SWOL_0196SWOL_0232
STYP99287 STM1183STM1184STM2826STM1961STM2771
STHE292459 STH2980STH2979STH121STH2976
SSP94122 SHEWANA3_1330SHEWANA3_1331SHEWANA3_1130SHEWANA3_1337SHEWANA3_1333
SSON300269 SSO_1102SSO_1103SSO_2840SSO_1981SSO_1193
SSED425104 SSED_3078SSED_3077SSED_1319SSED_3071SSED_3076
SPRO399741 SPRO_2961SPRO_2960SPRO_0844SPRO_2942SPRO_2940
SPEA398579 SPEA_0066SPEA_1350SPEA_1197SPEA_1356SPEA_1352
SONE211586 SO_3239SO_3426SO_3233SO_3237
SLOI323850 SHEW_1354SHEW_1355SHEW_1218SHEW_1361SHEW_1356
SHAL458817 SHAL_4256SHAL_1437SHAL_1234SHAL_1443SHAL_1439
SGLO343509 SG0039SG0040SG0539SG0056SG0058
SFLE373384 SFV_1105SFV_2809SFV_1969SFV_1967
SENT454169 SEHA_C1295SEHA_C1296SEHA_C3012SEHA_C2176SEHA_C2947
SENT321314 SCH_1130SCH_1131SCH_2759SCH_1965SCH_1962
SENT295319 SPA1668SPA1667SPA2684SPA0909SPA0911
SENT220341 STY1222STY1223STY2947STY2169STY2165
SENT209261 T1737T1736T2727T0916T0918
SDEN318161 SDEN_1312SDEN_1313SDEN_1214SDEN_1319SDEN_1315
SDEG203122 SDE_2204SDE_2203SDE_1301SDE_2197SDE_2200
SBOY300268 SBO_1982SBO_1981SBO_2822SBO_1081SBO_1083
SBAL402882 SHEW185_2953SHEW185_2952SHEW185_3122SHEW185_2941SHEW185_2948
SBAL399599 SBAL195_3091SBAL195_3090SBAL195_3265SBAL195_3073SBAL195_3084
SACI56780 SYN_02812SYN_02811SYN_02810SYN_02806SYN_02804
RMET266264 RMET_3743RMET_3744RMET_5255RMET_5252
RFER338969 RFER_3723RFER_3724RFER_0633RFER_0631
REUT381666 H16_B0270H16_B0271H16_B2363H16_B2360
REUT264198 REUT_B5634REUT_B5635REUT_B5092REUT_B5089
PTHE370438 PTH_2112PTH_2111PTH_2098PTH_2095PTH_2102
PSYR223283 PSPTO_1944PSPTO_1945PSPTO_1844PSPTO_1952PSPTO_1949
PSYR205918 PSYR_3471PSYR_3470PSYR_3554PSYR_3463PSYR_3466
PSTU379731 PST_1397PST_1398PST_1371PST_1866PST_1404
PSP117 RB10644RB5711RB8149RB6996
PPUT76869 PPUTGB1_3942PPUTGB1_3941PPUTGB1_3977PPUTGB1_3936PPUTGB1_3939
PPUT351746 PPUT_1474PPUT_1475PPUT_1443PPUT_1492PPUT_1489
PPUT160488 PP_4381PP_4380PP_4472PP_4375PP_4378
PPRO298386 PBPRA0910PBPRA0039PBPRA3065PBPRA0043PBPRA0913
PMOB403833 PMOB_0393PMOB_0392PMOB_0390PMOB_1487PMOB_1811
PMEN399739 PMEN_2841PMEN_2840PMEN_2901PMEN_2831PMEN_2835
PLUM243265 PLU1924PLU1925PLU1251PLU1952PLU1954
PING357804 PING_3569PING_3568PING_3378PING_3585
PHAL326442 PSHAA0778PSHAA0779PSHAA0534PSHAA0786PSHAA0781
PFLU220664 PFL_1618PFL_1619PFL_4504PFL_1632PFL_1629
PFLU216595 PFLU4451PFLU4450PFLU4746PFLU4445PFLU4448
PFLU205922 PFL_1506PFL_1507PFL_4273PFL_1530PFL_1527
PENT384676 PSEEN3832PSEEN3831PSEEN3873PSEEN3823PSEEN3826
PCAR338963 PCAR_1149PCAR_1148PCAR_1147PCAR_1111PCAR_1115
PATL342610 PATL_3091PATL_3090PATL_3014PATL_3082PATL_3085
PAER208964 PA1086PA1087PA0905PA1095PA1092
PAER208963 PA14_50360PA14_50340PA14_52570PA14_50250PA14_50290
OIHE221109 OB2507OB2506OB2503OB2500OB2727
NSP387092 NIS_0645NIS_0644NIS_0643NIS_0640
NSP35761 NOCA_0769NOCA_0770NOCA_0772NOCA_0764NOCA_0766
NOCE323261 NOC_2369NOC_2368NOC_0928NOC_2364NOC_2367
NMUL323848 NMUL_A1330NMUL_A1331NMUL_A1340NMUL_A1337
NEUT335283 NEUT_0344NEUT_0345NEUT_0949NEUT_1824
NEUR228410 NE0311NE0312NE1596NE1593
MTHE264732 MOTH_0746MOTH_0747MOTH_0750MOTH_0766MOTH_0760
MSP400668 MMWYL1_3574MMWYL1_3573MMWYL1_3626MMWYL1_3567MMWYL1_3570
MPET420662 MPE_A3064MPE_A3063MPE_A2864MPE_A2866
MFLA265072 MFLA_1963MFLA_1964MFLA_1983MFLA_1986
MAQU351348 MAQU_1111MAQU_1112MAQU_0967MAQU_2589MAQU_2592
LXYL281090 LXX06190LXX06470LXX06280LXX06240
LSPH444177 BSPH_1151BSPH_1152BSPH_1155BSPH_1174BSPH_1035
LPNE400673 LPC_0694LPC_0695LPC_2513LPC_0753LPC_0756
LPNE297246 LPP1233LPP1234LPP0845LPP1291LPP1294
LPNE297245 LPL1233LPL1234LPL0820LPL1290LPL1293
LPNE272624 LPG1225LPG1226LPG0781LPG1337LPG1340
LINT363253 LI0747LI0748LI0749LI0210LI0710
LINT267671 LIC_13451LIC_13450LIC_13448LIC_11657LIC_11890
LINT189518 LA4308LA4307LA4305LA2280LA2017
LCHO395495 LCHO_2725LCHO_2724LCHO_1012LCHO_1010
LBOR355277 LBJ_2967LBJ_2966LBJ_2964LBJ_1331LBJ_1961
LBOR355276 LBL_0097LBL_0098LBL_0100LBL_1556LBL_1323
LBIF456481 LEPBI_I3213LEPBI_I3210LEPBI_I1471LEPBI_I2133
LBIF355278 LBF_3101LBF_3098LBF_1418LBF_1538
KRAD266940 KRAD_1622KRAD_1621KRAD_1677KRAD_1628
JSP375286 MMA_1427MMA_1428MMA_1447MMA_1450
ILOI283942 IL1138IL1137IL1737IL1133IL1136
HPYL85963 JHP1047JHP0280JHP0690JHP0107
HPYL357544 HPAG1_1057HPAG1_0297HPAG1_0738HPAG1_0115
HPY HP1119HP0295HP0753HP0115
HMOD498761 HM1_1205HM1_1206HM1_1209HM1_1251HM1_1250
HHEP235279 HH_0876HH_1695HH_0791HH_1653
HHAL349124 HHAL_0511HHAL_0510HHAL_1651HHAL_0503HHAL_0506
HCHE349521 HCH_04473HCH_04472HCH_05205HCH_04817HCH_04822
HARS204773 HEAR1891HEAR1890HEAR1869HEAR1866
HACI382638 HAC_0597HAC_0555HAC_0665HAC_1474
GURA351605 GURA_4099GURA_4098GURA_4097GURA_4093GURA_4095
GTHE420246 GTNG_3062GTNG_3061GTNG_3058GTNG_3068GTNG_3067
GSUL243231 GSU_3043GSU_3042GSU_3041GSU_3036GSU_3038
GMET269799 GMET_0438GMET_0439GMET_0440GMET_0445GMET_0442
GKAU235909 GK3137GK3136GK3133GK3113GK3131
FNOD381764 FNOD_1651FNOD_1650FNOD_1511FNOD_0821FNOD_1476
ESP42895 ENT638_1596ENT638_1597ENT638_3171ENT638_2524ENT638_2522
EFER585054 EFER_1846EFER_1845EFER_0378EFER_1168EFER_1170
ECOO157 FLGKFLGLCSRAFLISFLIC
ECOL83334 ECS1460ECS1461ECS3553ECS2664ECS2662
ECOL585397 ECED1_1226ECED1_1227ECED1_3145ECED1_2190ECED1_2188
ECOL585057 ECIAI39_2080ECIAI39_2079ECIAI39_2881ECIAI39_1130ECIAI39_1132
ECOL585056 ECUMN_1256ECUMN_1257ECUMN_3017ECUMN_2217ECUMN_2215
ECOL585055 EC55989_1195EC55989_1196EC55989_2958EC55989_2146EC55989_2144
ECOL585035 ECS88_1096ECS88_1097ECS88_2959ECS88_1979ECS88_1977
ECOL585034 ECIAI1_1118ECIAI1_1119ECIAI1_2787ECIAI1_2011ECIAI1_2009
ECOL481805 ECOLC_2518ECOLC_2517ECOLC_1016ECOLC_1714ECOLC_1716
ECOL469008 ECBD_2518ECBD_2517ECBD_1029ECBD_1717ECBD_1719
ECOL439855 ECSMS35_2046ECSMS35_2045ECSMS35_2818ECSMS35_1256ECSMS35_1258
ECOL409438 ECSE_1145ECSE_1146ECSE_2944ECSE_2156ECSE_2154
ECOL405955 APECO1_164APECO1_165APECO1_966APECO1_964
ECOL364106 UTI89_C1207UTI89_C1208UTI89_C3057UTI89_C2126UTI89_C2124
ECOL362663 ECP_1074ECP_1075ECP_2656ECP_1859ECP_1857
ECOL331111 ECE24377A_1205ECE24377A_1206ECE24377A_2979ECE24377A_2160ECE24377A_2158
ECOL316407 ECK1067:JW1069:B1082ECK1068:JW1070:B1083ECK2691:JW2666:B2696ECK1924:JW1910:B1925ECK1922:JW1908:B1923
ECOL199310 C1351C1352C3249C2340C2338
ECAR218491 ECA1711ECA1712ECA3366ECA1729ECA1731
DVUL882 DVU_0519DVU_0520DVU_0521DVU_0862
DRED349161 DRED_2436DRED_2435DRED_2417DRED_2415DRED_2433
DPSY177439 DP2689DP1661DP2691DP1658DP2693
DHAF138119 DSY3028DSY3027DSY3024DSY3000DSY3022
DDES207559 DDE_3152DDE_3151DDE_3150DDE_1119DDE_1501
DARO159087 DARO_0758DARO_0759DARO_0781DARO_0784
CVIO243365 CV_2879CV_2878CV_2993CV_3879
CTET212717 CTC_01724CTC_01722CTC_01719CTC_01715
CSAL290398 CSAL_1969CSAL_1968CSAL_0627CSAL_2032CSAL_1985
CPSY167879 CPS_1486CPS_1487CPS_1043CPS_1496CPS_1488
CPHY357809 CPHY_0305CPHY_0307CPHY_0309CPHY_0313CPHY_3850
CNOV386415 NT01CX_1872NT01CX_1873NT01CX_1875NT01CX_1878NT01CX_1881
CKLU431943 CKL_2121CKL_2117CKL_2114CKL_1149
CJEJ407148 C8J_1372C8J_0824C8J_0510C8J_1256
CJEJ360109 JJD26997_1814JJD26997_1031JJD26997_1381JJD26997_0372
CJEJ354242 CJJ81176_1459CJJ81176_0894CJJ81176_0574CJJ81176_1339
CJEJ195099 CJE_1640CJE_0966CJE_0653CJE_1528
CJEJ192222 CJ1466CJ0887CCJ0549CJ1339C
CJAP155077 CJA_1922CJA_1921CJA_1361CJA_1701CJA_1917
CHYD246194 CHY_0971CHY_0972CHY_0975CHY_0986CHY_0981
CFET360106 CFF8240_0100CFF8240_0683CFF8240_0091CFF8240_1635
CDIF272563 CD0231CD0232CD0234CD0235CD0239
CDES477974 DAUD_1788DAUD_1787DAUD_1784DAUD_1781
CCUR360105 CCV52592_0786CCV52592_1295CCV52592_0697CCV52592_0777CCV52592_0568
CCON360104 CCC13826_0708CCC13826_1300CCC13826_1036CCC13826_2297
CBOT536232 CLM_3106CLM_3105CLM_3103CLM_3100CLM_3060
CBOT515621 CLJ_B2967CLJ_B2966CLJ_B2964CLJ_B2961CLJ_B2958
CBOT508765 CLL_A0809CLL_A0811CLL_A0814CLL_A0820
CBOT498213 CLD_1834CLD_1835CLD_1837CLD_1840CLD_0531
CBOT441772 CLI_2790CLI_2789CLI_2787CLI_2784CLI_2760
CBOT441771 CLC_2614CLC_2613CLC_2611CLC_2608CLC_0300
CBOT441770 CLB_2681CLB_2680CLB_2678CLB_2675CLB_0285
CBOT36826 CBO2740CBO2739CBO2737CBO2734CBO0242
CBEI290402 CBEI_4298CBEI_4295CBEI_4292CBEI_4289
CACE272562 CAC2212CAC2211CAC2209CAC2206CAC2203
BVIE269482 BCEP1808_3100BCEP1808_3099BCEP1808_3147BCEP1808_0199
BTHA271848 BTH_I0250BTH_I0251BTH_I0202BTH_I3196
BSUB BSU35410BSU35400BSU35370BSU35330BSU35360
BSP36773 BCEP18194_A6361BCEP18194_A6360BCEP18194_A6411BCEP18194_A3343
BPUM315750 BPUM_3190BPUM_3189BPUM_3186BPUM_3183BPUM_0150
BPSE320373 BURPS668_0276BURPS668_0277BURPS668_0224BURPS668_3870
BPSE320372 BURPS1710B_A0492BURPS1710B_A0493BURPS1710B_A0442BURPS1710B_A0097
BPSE272560 BPSL0280BPSL0281BPSL0232BPSL3319
BPET94624 BPET2130BPET2131BPET1351BPET2153BPET2095
BPER257313 BP1382BP1383BP1409BP0996
BPAR257311 BPP1494BPP1495BPP1516BPP1465
BMAL320389 BMA10247_3344BMA10247_3343BMA10247_3398BMA10247_3102
BMAL320388 BMASAVP1_A3004BMASAVP1_A3005BMASAVP1_A2948BMASAVP1_A3448
BMAL243160 BMA_3335BMA_3336BMA_3283BMA_2873
BLIC279010 BL03369BL03370BL03373BL03377BL03374
BHAL272558 BH3621BH3620BH3617BH3613BH3616
BGAR290434 BG0180BG0147BG0183BG0147
BCLA66692 ABC3079ABC3078ABC3076ABC3073ABC3699
BCEN331272 BCEN2424_3015BCEN2424_3014BCEN2424_3062BCEN2424_0241
BCEN331271 BCEN_2401BCEN_2400BCEN_2448BCEN_2866
BBUR224326 BB_0181BB_0147BB_0184BB_0147
BBRO257310 BB2568BB2569BB2594BB2539
BBAC264462 BD0540BD0542BD0611BD0408
BAMY326423 RBAM_032560RBAM_032550RBAM_032520RBAM_032490RBAM_032510
BAMB398577 BAMMC406_2925BAMMC406_2924BAMMC406_2973BAMMC406_0169
BAMB339670 BAMB_3060BAMB_3059BAMB_3107BAMB_0156
BAFZ390236 BAPKO_0183BAPKO_0149BAPKO_0186BAPKO_0149
ASP62928 AZO2731AZO2730AZO2707AZO2704
ASAL382245 ASA_0372ASA_0373ASA_3813ASA_0380ASA_2662
AORE350688 CLOS_2521CLOS_2520CLOS_2494CLOS_2489CLOS_2518
AMET293826 AMET_0727AMET_0728AMET_0731AMET_0786AMET_0732
AHYD196024 AHA_2833AHA_2832AHA_3712AHA_1702AHA_1699
AEHR187272 MLG_0902MLG_0903MLG_1479MLG_0704MLG_0698
ABAU360910 BAV1697BAV1698BAV1722BAV1668
AAVE397945 AAVE_4430AAVE_4431AAVE_4398AAVE_4400


Organism features enriched in list (features available for 212 out of the 224 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0040758117
Arrangment:Singles 0.0009495121286
Disease:Botulism 0.006168455
Disease:Bubonic_plague 0.002209166
Disease:Gastroenteritis 0.00003691213
Endospores:No 0.000436359211
Endospores:Yes 0.00083343053
GC_Content_Range4:0-40 1.770e-652213
GC_Content_Range4:40-60 6.157e-6106224
GC_Content_Range7:30-40 6.119e-638166
GC_Content_Range7:50-60 0.000175355107
Genome_Size_Range5:0-2 3.362e-1321155
Genome_Size_Range5:2-4 0.003276158197
Genome_Size_Range5:4-6 1.953e-15110184
Genome_Size_Range9:0-1 0.0000581127
Genome_Size_Range9:1-2 5.122e-920128
Genome_Size_Range9:2-3 8.305e-624120
Genome_Size_Range9:4-5 7.825e-96096
Genome_Size_Range9:5-6 0.00001165088
Genome_Size_Range9:6-8 0.00277872238
Gram_Stain:Gram_Neg 2.889e-13162333
Gram_Stain:Gram_Pos 9.817e-731150
Habitat:Host-associated 0.003064561206
Habitat:Multiple 0.005477277178
Motility:No 7.090e-1913151
Motility:Yes 6.836e-37169267
Optimal_temp.:- 0.0018532109257
Optimal_temp.:28-30 0.000788777
Oxygen_Req:Microaerophilic 4.214e-61618
Pathogenic_in:No 0.003015768226
Shape:Coccus 3.460e-15282
Shape:Rod 3.109e-10161347
Shape:Sphere 0.0096029219
Shape:Spiral 1.841e-92934



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 357
Effective number of orgs (counting one per cluster within 468 clusters): 282

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B1
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785781
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP376 Bradyrhizobium sp.1
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola1
BCAN483179 ncbi Brucella canis ATCC 233651
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP11
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABOR393595 ncbi Alcanivorax borkumensis SK21
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  EG11967   EG11545   EG11447   EG11388   EG10321   
XFAS405440 XFASM12_0102
XFAS183190 PD_0095
XFAS160492 XF0125
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TPEN368408
TKOD69014
TFUS269800
TERY203124
TELO197221
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076 SCH4B_3273
SSP387093
SSP321332
SSP321327
SSP292414 TM1040_2940
SSP1148
SSP1131
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC03048
SMED366394 SMED_0277
SMAR399550
SLAC55218 SL1157_0863
SHAE279808
SGOR29390
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSP357808
RSP101510
RSAL288705
RRUB269796 RRU_A2529
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_0193
RPAL316057 RPD_1668
RPAL316055 RPE_1504
RPAL258594 RPA3931
RMAS416276
RLEG216596 PRL120063
RFEL315456
RETL347834 RHE_CH00680
RDEN375451 RD1_0580
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP56811 PSYCPRWF_1613
PSP312153
PSP296591
PRUM264731
PPEN278197
PNAP365044
PMUL272843 PM1288
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284 PCRYO_1640
PAST100379
PARS340102
PARC259536 PSYC_1462
PAER178306
PACN267747
PABY272844
OTSU357244
OCAR504832 OCAR_5370
OANT439375 OANT_4192
NWIN323098 NWI_1100
NSP103690
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_1332
NGON242231
NFAR247156
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988 MS0347
MSTA339860
MSP409 M446_4185
MSP266779 MESO_0278
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_0691
MMAR368407
MMAR267377
MMAG342108 AMB3827
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MEXT419610 MEXT_0951
MCAP340047
MCAP243233 MCA_0391
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_0060
LBRE387344
LACI272621
KPNE272620 GKPORF_B2355
JSP290400 JANN_4174
IHOS453591
HWAL362976
HSP64091
HSOM228400 HSM_1061
HSOM205914
HSAL478009
HNEP81032 HNE_0249
HMUK485914
HMAR272569
HINF71421 HI_0813
HINF374930 CGSHIEE_07995
HINF281310 NTHI0977
HDUC233412 HD_1430
HBUT415426
HAUR316274
GVIO251221
GOXY290633 GOX1026
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580 DSHI_3378
DRAD243230
DOLE96561
DNOD246195 DNO_0284
DGEO319795
DETH243164
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78 CAUL_1007
CSP501479 CSE45_3443
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_0992
CBUR360115 COXBURSA331_A0885
CBUR227377 CBU_1050
CBLO291272 BPEN_175
CBLO203907 BFL169
CAULO CC0899
CABO218497
BXEN266265
BTRI382640
BTHE226186
BSUI470137 BSUIS_B1365
BSUI204722 BR_A1138
BSP376 BRADO5064
BQUI283165
BOVI236 GBOORFA1129
BMEL359391 BAB2_1097
BMEL224914 BMEII0160
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490 BCI_0204
BCAN483179 BCAN_B1167
BBAC360095 BARBAKC583_1121
BAPH372461 BCC_255
BABO262698 BRUAB2_1075
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114 EBA4527
ASP62977 ACIAD1251
ASP1667
APLE434271 APJL_0643
APLE416269 APL_0653
APHA212042
APER272557
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ACRY349163 ACRY_0109
ACAU438753 AZC_0648
ABOR393595 ABO_1796
AAUR290340


Organism features enriched in list (features available for 330 out of the 357 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.005685599
Arrangment:Clusters 0.00071661617
Arrangment:Filaments 0.00317951010
Arrangment:Singles 0.0045269148286
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00177561111
Disease:Wide_range_of_infections 0.00177561111
Disease:gastroenteritis 0.0002882113
Endospores:No 6.819e-6144211
Endospores:Yes 2.269e-81153
GC_Content_Range4:0-40 0.0001233141213
GC_Content_Range4:40-60 0.0010851110224
GC_Content_Range7:30-40 0.0001372113166
GC_Content_Range7:50-60 0.000645746107
Genome_Size_Range5:0-2 4.507e-16129155
Genome_Size_Range5:2-4 0.0003275130197
Genome_Size_Range5:4-6 2.314e-2448184
Genome_Size_Range9:0-1 0.00392932227
Genome_Size_Range9:1-2 3.044e-13107128
Genome_Size_Range9:2-3 1.706e-690120
Genome_Size_Range9:4-5 5.458e-122496
Genome_Size_Range9:5-6 1.197e-92488
Gram_Stain:Gram_Neg 9.834e-12149333
Gram_Stain:Gram_Pos 0.0001773103150
Habitat:Host-associated 0.0002139136206
Habitat:Multiple 0.000229782178
Habitat:Terrestrial 0.00799181131
Motility:No 1.270e-24136151
Motility:Yes 2.542e-4569267
Optimal_temp.:- 0.0005403127257
Optimal_temp.:37 0.004967771106
Oxygen_Req:Microaerophilic 0.0000621218
Shape:Coccus 3.208e-187982
Shape:Irregular_coccus 0.00005231717
Shape:Rod 5.856e-13155347
Shape:Sphere 0.00178351719
Shape:Spiral 1.545e-10234



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TPAL243276 ncbi Treponema pallidum pallidum Nichols 0.00015742495
BGAR290434 ncbi Borrelia garinii PBi 0.00913552244
BAFZ390236 ncbi Borrelia afzelii PKo 0.00997792294


Names of the homologs of the genes in the group in each of these orgs
  EG11967   EG11545   EG11447   EG11388   EG10321   
TPAL243276 TP_0660TP_0659TP_0657TP_0943TP_0792
BGAR290434 BG0180BG0147BG0183BG0147
BAFZ390236 BAPKO_0183BAPKO_0149BAPKO_0186BAPKO_0149


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Acrodermatitis_chronica_atrophicans 0.005145811
Disease:Syphilis 0.005145811
Shape:Spiral 0.0001821334



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201040.5162
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181460.4742
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301480.4526
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761180.4065



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11545   EG11447   EG11388   EG10321   
EG119670.9999420.9993720.9995450.999574
EG115450.9993580.9995640.999622
EG114470.9989060.998915
EG113880.999716
EG10321



Back to top


PAIRWISE BLAST SCORES:

  EG11967   EG11545   EG11447   EG11388   EG10321   
EG119670.0f0----
EG11545-0.0f0---
EG11447--0.0f0--
EG11388---0.0f0-
EG10321----0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-7452 (Flagellum) (degree of match pw to cand: 0.111, degree of match cand to pw: 0.600, average score: 0.998)
  Genes in pathway or complex:
             0.9994 0.9982 EG10841 (fliD) EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
   *in cand* 0.9996 0.9989 EG10321 (fliC) EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
   *in cand* 0.9997 0.9994 EG11545 (flgL) EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
   *in cand* 0.9997 0.9994 EG11967 (flgK) EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)
             0.9972 0.9892 G361 (flgE) G361-MONOMER (flagellar hook protein FlgE)
             0.9983 0.9950 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
             0.9977 0.9917 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
             0.8745 0.4341 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
             0.9977 0.9915 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
             0.9923 0.9660 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
             0.9972 0.9890 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
             0.9941 0.9740 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
             0.9980 0.9927 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
             0.9827 0.9171 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
             0.9986 0.9957 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
             0.9985 0.9954 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
             0.9986 0.9954 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9985 0.9945 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
             0.9944 0.9791 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9937 0.9771 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9983 0.9944 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9988 0.9965 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9985 0.9949 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9989 0.9963 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9984 0.9940 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
             0.9984 0.9943 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
             0.9953 0.9795 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9989 EG11388 (fliS) EG11388-MONOMER (flagellar biosynthesis protein FliS)
   *in cand* 0.9993 0.9989 EG11447 (csrA) EG11447-MONOMER (carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11545 EG11967 (centered at EG11545)
EG10321 (centered at EG10321)
EG11388 (centered at EG11388)
EG11447 (centered at EG11447)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11967   EG11545   EG11447   EG11388   EG10321   
299/623251/623207/623227/623248/623
AAEO224324:0:Tyes01--243
AAVE397945:0:Tyes3233-02
ABAC204669:0:Tyes01--5
ABAU360910:0:Tyes2930-540
ABOR393595:0:Tyes--0--
ABUT367737:0:Tyes0--22039
ACAU438753:0:Tyes0----
ACEL351607:0:Tyes320--
ACRY349163:8:Tyes0----
ADEH290397:0:Tyes54--0
AEHR187272:0:Tyes20420577660
AHYD196024:0:Tyes11031102192630
AMET293826:0:Tyes014595
AORE350688:0:Tyes31305028
APLE416269:0:Tyes--0--
APLE434271:0:Tno--0--
ASAL382245:5:Tyes01331672205
ASP232721:2:Tyes27--02
ASP62928:0:Tyes2726-30
ASP62977:0:Tyes--0--
ASP76114:2:Tyes----0
BABO262698:0:Tno0----
BAFZ390236:2:Fyes33036-0
BAMB339670:3:Tno29792978-30260
BAMB398577:3:Tno27972796-28450
BAMY326423:0:Tyes76302
BANT260799:0:Tno01--31
BANT261594:2:Tno028--28
BANT568206:2:Tyes3836--0
BANT592021:2:Tno01--38
BAPH198804:0:Tyes0-56--
BAPH372461:0:Tyes--0--
BBAC264462:0:Tyes119120-1820
BBAC360095:0:Tyes0----
BBRO257310:0:Tyes2930-530
BBUR224326:21:Fno34037-0
BCAN483179:0:Tno0----
BCEN331271:2:Tno10-48476
BCEN331272:3:Tyes27682767-28150
BCER226900:1:Tyes019--19
BCER288681:0:Tno01--20
BCER315749:1:Tyes01--24
BCER405917:1:Tyes01--20
BCER572264:1:Tno01--21
BCIC186490:0:Tyes--0--
BCLA66692:0:Tyes6530625
BGAR290434:2:Fyes33036-0
BHAL272558:0:Tyes87403
BHER314723:0:Fyes30-33-0
BJAP224911:0:Fyes21700---
BLIC279010:0:Tyes87403
BMAL243160:1:Tno425426-3740
BMAL320388:1:Tno5657-0485
BMAL320389:1:Tyes240239-2940
BMEL224914:0:Tno0----
BMEL359391:0:Tno0----
BOVI236:0:Tyes0----
BPAR257311:0:Tno2526-430
BPER257313:0:Tyes345346-3670
BPET94624:0:Tyes7847850807751
BPSE272560:1:Tyes4849-03105
BPSE320372:1:Tno391392-3410
BPSE320373:1:Tno5253-03516
BPUM315750:0:Tyes30723071306830650
BSP107806:2:Tyes0-57--
BSP36773:2:Tyes30733072-31230
BSP376:0:Tyes0----
BSUB:0:Tyes87403
BSUI204722:0:Tyes0----
BSUI470137:0:Tno0----
BTHA271848:1:Tno4849-02932
BTHU281309:1:Tno020--20
BTHU412694:1:Tno01--20
BTUR314724:0:Fyes30-33-0
BVIE269482:7:Tyes28752874-29220
BWEI315730:4:Tyes01--25
CACE272562:1:Tyes98630
CAULO:0:Tyes0----
CBEI290402:0:Tyes9-630
CBLO203907:0:Tyes--0--
CBLO291272:0:Tno--0--
CBOT36826:1:Tno24732472247024670
CBOT441770:0:Tyes23472346234423410
CBOT441771:0:Tno22672266226422610
CBOT441772:1:Tno262523200
CBOT498213:1:Tno24722471246924660
CBOT508765:1:Tyes-02511
CBOT515621:2:Tyes98630
CBOT536232:0:Tno454442390
CBUR227377:1:Tyes--0--
CBUR360115:1:Tno--0--
CBUR434922:2:Tno--0--
CCON360104:2:Tyes989-0984
CCUR360105:0:Tyes2150390224851
CDES477974:0:Tyes76-30
CDIF272563:1:Tyes01348
CFET360106:0:Tyes9567-01504
CHYD246194:0:Tyes0141510
CJAP155077:0:Tyes5455440329540
CJEJ192222:0:Tyes896315-0773
CJEJ195099:0:Tno953296-0845
CJEJ354242:2:Tyes856309-0740
CJEJ360109:0:Tyes1353624-9500
CJEJ407148:0:Tno884322-0768
CKLU431943:1:Tyes965-9619580
CNOV386415:0:Tyes01369
CPHY357809:0:Tyes02483514
CPSY167879:0:Tyes4374380447439
CSAL290398:0:Tyes13721371014341388
CSP501479:7:Fyes0----
CSP78:2:Tyes0----
CTET212717:0:Tyes76-30
CVIO243365:0:Tyes10-1201038
DARO159087:0:Tyes01-2326
DDES207559:0:Tyes2070206920680387
DHAF138119:0:Tyes282724022
DNOD246195:0:Tyes--0--
DPSY177439:2:Tyes10563105801060
DRED349161:0:Tyes21202018
DSHI398580:5:Tyes0----
DVUL882:1:Tyes012341-
ECAR218491:0:Tyes0116781719
ECOL199310:0:Tno011869970968
ECOL316407:0:Tno011621861859
ECOL331111:6:Tno011700923921
ECOL362663:0:Tno011584780778
ECOL364106:1:Tno011846918916
ECOL405955:2:Tyes01-810808
ECOL409438:6:Tyes01182910191017
ECOL413997:0:Tno011468--
ECOL439855:4:Tno781780152802
ECOL469008:0:Tno147414730695697
ECOL481805:0:Tno150014990702704
ECOL585034:0:Tno011647875873
ECOL585035:0:Tno011792847845
ECOL585055:0:Tno011747948946
ECOL585056:2:Tno011767955953
ECOL585057:0:Tno935934174202
ECOL585397:0:Tno011850910908
ECOL83334:0:Tno01214212241222
ECOLI:0:Tno011664883881
ECOO157:0:Tno01208111941192
EFER585054:1:Tyes145214510783785
ESP42895:1:Tyes011586925923
FNOD381764:0:Tyes8478467110676
GKAU235909:1:Tyes242320018
GMET269799:1:Tyes01274
GOXY290633:5:Tyes0----
GSUL243231:0:Tyes76502
GTHE420246:1:Tyes430109
GURA351605:0:Tyes65402
HACI382638:1:Tyes360-94835
HARS204773:0:Tyes2322-30
HCHE349521:0:Tyes10725344349
HDUC233412:0:Tyes--0--
HHAL349124:0:Tyes87115703
HHEP235279:0:Tyes85920-0878
HINF281310:0:Tyes--0--
HINF374930:0:Tyes--0--
HINF71421:0:Tno--0--
HMOD498761:0:Tyes44434001
HNEP81032:0:Tyes0----
HPY:0:Tno1012180-6400
HPYL357544:1:Tyes962184-6290
HPYL85963:0:Tno930171-5740
HSOM228400:0:Tno--0--
ILOI283942:0:Tyes5461203
JSP290400:1:Tyes0----
JSP375286:0:Tyes01-2023
KPNE272620:2:Tyes--0--
KRAD266940:2:Fyes5556049-
LBIF355278:2:Tyes1655-16520119
LBIF456481:2:Tno1720-17170668
LBOR355276:1:Tyes01313221113
LBOR355277:1:Tno1469146814660570
LCAS321967:1:Tyes0----
LCHO395495:0:Tyes17421741-20
LINN272626:1:Tno01---
LINT189518:1:Tyes2312231123092650
LINT267671:1:Tno1759175817560228
LINT363253:3:Tyes5355365370498
LMON169963:0:Tno01---
LMON265669:0:Tyes01---
LPNE272624:0:Tno4434440555558
LPNE297245:1:Fno4094100467470
LPNE297246:1:Fyes3873880447450
LPNE400673:0:Tno0117815962
LSPH444177:1:Tyes1141151181350
LWEL386043:0:Tyes01---
LXYL281090:0:Tyes-01843
MAQU351348:2:Tyes140141016011604
MCAP243233:0:Tyes--0--
MEXT419610:0:Tyes0----
MFLA265072:0:Tyes01-2023
MMAG342108:0:Tyes0----
MMAR394221:0:Tyes0----
MPET420662:1:Tyes199198-02
MSP266779:3:Tyes0----
MSP400668:0:Tyes767103
MSP409:2:Tyes0----
MSUC221988:0:Tyes--0--
MTHE264732:0:Tyes0142014
NARO279238:0:Tyes-0--0
NEUR228410:0:Tyes01-13061303
NEUT335283:2:Tyes01-5951463
NHAM323097:2:Tyes0----
NMUL323848:3:Tyes01-107
NOCE323261:1:Tyes14141413014091412
NSP35761:1:Tyes56802
NSP387092:0:Tyes54-30
NWIN323098:0:Tyes0----
OANT439375:4:Tyes0----
OCAR504832:0:Tyes0----
OIHE221109:0:Tyes7630227
PAER208963:0:Tyes9820303
PAER208964:0:Tno1871880196193
PARC259536:0:Tyes--0--
PATL342610:0:Tyes757406669
PCAR338963:0:Tyes38373604
PCRY335284:1:Tyes--0--
PENT384676:0:Tyes985003
PFLU205922:0:Tyes0128042421
PFLU216595:1:Tyes6528603
PFLU220664:0:Tyes0128411411
PHAL326442:1:Tyes2442450251246
PING357804:0:Tyes1881870204-
PLUM243265:0:Fyes7097100737739
PMEN399739:0:Tyes1097504
PMOB403833:0:Tyes32010861403
PMUL272843:1:Tyes--0--
PPRO298386:2:Tyes871030184874
PPUT160488:0:Tno659603
PPUT351746:0:Tyes363705451
PPUT76869:0:Tno654703
PSP117:0:Tyes270301374-729
PSP56811:2:Tyes--0--
PSTU379731:0:Tyes2627048933
PSYR205918:0:Tyes879503
PSYR223283:2:Tyes991000107104
PTHE370438:0:Tyes1716307
RDEN375451:4:Tyes0----
RETL347834:5:Tyes0----
REUT264198:2:Tyes544545-30
REUT381666:1:Tyes01-20742071
RFER338969:1:Tyes30923093-20
RLEG216596:5:Tyes0----
RMET266264:1:Tyes01-14991496
RPAL258594:0:Tyes0----
RPAL316055:0:Tyes0----
RPAL316056:0:Tyes11340---
RPAL316057:0:Tyes0----
RPAL316058:0:Tyes30620---
RPOM246200:1:Tyes0----
RRUB269796:1:Tyes0----
RSOL267608:0:Tyes01-33-
RSPH272943:4:Tyes5---0
RSPH349101:2:Tno5---0
RSPH349102:5:Tyes54--0
SACI56780:0:Tyes01268
SALA317655:1:Tyes01--22
SBAL399599:3:Tyes1514202010
SBAL402882:1:Tno9819105
SBOY300268:1:Tyes859858164902
SDEG203122:0:Tyes9209190913916
SDEN318161:0:Tyes1061070113109
SDYS300267:1:Tyes-92316970-
SENT209261:0:Tno774773171802
SENT220341:0:Tno011571849847
SENT295319:0:Tno723722170102
SENT321314:2:Tno011655844841
SENT454169:2:Tno0116498501590
SFLE198214:0:Tyes--72520
SFLE373384:0:Tno-01615815813
SGLO343509:3:Tyes015171719
SHAL458817:0:Tyes31222110217213
SHIGELLA:0:Tno--72220
SLAC55218:1:Fyes0----
SLOI323850:0:Tyes1421430149144
SMED366394:3:Tyes0----
SMEL266834:2:Tyes0----
SONE211586:1:Tyes-619204
SPEA398579:0:Tno01334117013401336
SPRO399741:1:Tyes21472146021282126
SRUB309807:1:Tyes76--0
SSED425104:0:Tyes18421841018351840
SSON300269:1:Tyes01165683487
SSP292414:2:Tyes0----
SSP644076:6:Fyes0----
SSP94122:1:Tyes2122130219215
STHE292459:0:Tyes2958295702954-
STYP99287:1:Tyes0116307701576
SWOL335541:0:Tyes01440-
TCRU317025:0:Tyes171614305
TDEN243275:0:Tyes2216221722190877
TDEN292415:0:Tyes3837-30
TDEN326298:0:Tyes3748592480-
TLET416591:0:Tyes42041941717690
TMAR243274:0:Tyes101661075661
TPAL243276:0:Tyes320284135
TPET390874:0:Tno68868950814280
TPSE340099:0:Tyes14131009
TROS309801:0:Tyes013173160
TSP1755:0:Tyes014145
TSP28240:0:Tyes71371453414920
TTEN273068:0:Tyes014115
TTUR377629:0:Tyes011396712
VCHO:0:Tyes16661665015971602
VCHO345073:1:Tno16601659016131618
VEIS391735:1:Tyes10-5513810
VFIS312309:2:Tyes13811380013711379
VPAR223926:0:Tyes-0---
VPAR223926:1:Tyes0-178814851490
VVUL196600:2:Tyes01185515311535
VVUL216895:1:Tno10133916611657
WSUC273121:0:Tyes10032267201873
XAXO190486:0:Tyes2342330230232
XCAM190485:0:Tyes2182170214216
XCAM314565:0:Tno0126342
XCAM316273:0:Tno2522510247249
XCAM487884:0:Tno5430503
XFAS160492:2:Tno--0--
XFAS183190:1:Tyes--0--
XFAS405440:0:Tno--0--
XORY291331:0:Tno0136842
XORY342109:0:Tyes0136242
XORY360094:0:Tno20932095021012097
YENT393305:1:Tyes16421641016191616
YPES187410:5:Tno16241622015901588
YPES214092:3:Tno0114293133
YPES349746:2:Tno01-1416
YPES360102:3:Tyes01-3335
YPES377628:2:Tno15531552015201518
YPES386656:2:Tno3231178220
YPSE273123:2:Tno8768770906908
YPSE349747:2:Tno333294430
ZMOB264203:0:Tyes0---24



Back to top