CANDIDATE ID: 678

CANDIDATE ID: 678

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9920760e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11859 (fdhD) (b3895)
   Products of gene:
     - EG11859-MONOMER (affects formate dehydrogenase-N)

- EG11857 (fdoH) (b3893)
   Products of gene:
     - FDOH-MONOMER (formate dehydrogenase-O, β subunit)
     - FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11856 (fdoI) (b3892)
   Products of gene:
     - FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
     - FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11229 (fdnI) (b1476)
   Products of gene:
     - FDNI-MONOMER (formate dehydrogenase N, γ subunit)
     - ALPHA-SUBUNIT-CPLX (trimer complex of formate dehydrogenase-N α, β and γ subunits)
     - FORMATEDEHYDROGN-CPLX (formate dehydrogenase-N)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG10284 (fdhE) (b3891)
   Products of gene:
     - EG10284-MONOMER (formate dehydrogenase formation protein)
     - CPLX0-7724 (formate dehydrogenase formation protein)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 124
Effective number of orgs (counting one per cluster within 468 clusters): 76

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XAUT78245 ncbi Xanthobacter autotrophicus Py25
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10215
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB5
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H165
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OCAR504832 ncbi Oligotropha carboxidovorans OM55
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.4
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MCAP243233 ncbi Methylococcus capsulatus Bath4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf45
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP501479 Citreicella sp. SE454
CJEJ407148 ncbi Campylobacter jejuni jejuni 811164
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1764
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
BXEN266265 ncbi Burkholderia xenovorans LB4004
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP232721 ncbi Acidovorax sp. JS424
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis4
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  EG11859   EG11857   EG11856   EG11229   EG10284   
YPSE349747 YPSIP31758_4120YPSIP31758_4118YPSIP31758_4117YPSIP31758_4117YPSIP31758_4116
YPSE273123 YPTB3926YPTB3928YPTB3929YPTB3929YPTB3930
YPES386656 YPDSF_0033YPDSF_0036YPDSF_0037YPDSF_0037YPDSF_0038
YPES377628 YPN_3707YPN_3704YPN_3703YPN_3703YPN_3702
YPES360102 YPA_3025YPA_3028YPA_3029YPA_3029YPA_3030
YPES349746 YPANGOLA_A3771YPANGOLA_A3769YPANGOLA_A3768YPANGOLA_A3768YPANGOLA_A3767
YPES214092 YPO4060YPO4057YPO4056YPO4056YPO4055
YPES187410 Y4079Y4077Y4076Y4076Y4075
YENT393305 YE4137YE4134YE4133YE4133YE4132
XAUT78245 XAUT_3478XAUT_0661XAUT_0660XAUT_0660XAUT_0659
WSUC273121 WS1149WS0936WS1148WS1148
VVUL216895 VV1_2584VV1_3033VV1_2592VV1_2592
VVUL196600 VV1706VV1252VV1698VV1698
VPAR223926 VPA0962VP1927VP1515VP1515
SWOL335541 SWOL_1030SWOL_0798SWOL_1823SWOL_0797SWOL_0796
STYP99287 STM4038STM4036STM4035STM1568STM4034
STHE292459 STH3094STH3100STH112STH112STH3102
SSP94122 SHEWANA3_0108SHEWANA3_2090SHEWANA3_2091SHEWANA3_2091SHEWANA3_2092
SSON300269 SSO_4064SSO_4062SSO_4061SSO_1648SSO_4060
SSED425104 SSED_4427SSED_2922SSED_4415SSED_4415
SPRO399741 SPRO_0082SPRO_0085SPRO_0086SPRO_0086SPRO_0087
SPEA398579 SPEA_0444SPEA_0439SPEA_0440SPEA_0440SPEA_0441
SONE211586 SO_0107SO_0102SO_0103SO_0103SO_0104
SMEL266834 SMC03085SMA0005SMA0007SMA0007SMA0009
SLOI323850 SHEW_0053SHEW_3157SHEW_0065SHEW_0065
SLAC55218 SL1157_0685SL1157_1489SL1157_3196SL1157_3196
SHIGELLA FDHDFDOHFDOIFDNIFDHE
SHAL458817 SHAL_0499SHAL_0494SHAL_0495SHAL_0495SHAL_0496
SFLE373384 SFV_3600SFV_3602SFV_3603SFV_1745SFV_3604
SFLE198214 AAN45406.1AAN45404.1AAN45403.1AAN43321.1AAN45402.1
SENT454169 SEHA_C4365SEHA_C4362SEHA_C4361SEHA_C1745SEHA_C4360
SENT321314 SCH_3927SCH_3926SCH_3925SCH_1569SCH_3924
SENT295319 SPA3880SPA3878SPA3877SPA1300SPA3876
SENT220341 STY3838STY3841STY3842STY3842STY3843
SENT209261 T3582T3584T3585T3585T3586
SDYS300267 SDY_3848SDY_3850SDY_3851SDY_1606SDY_3852
SBOY300268 SBO_3909SBO_3907SBO_3906SBO_1581SBO_3905
SBAL402882 SHEW185_0106SHEW185_0101SHEW185_0102SHEW185_0102SHEW185_0103
SBAL399599 SBAL195_0111SBAL195_0106SBAL195_0107SBAL195_0107SBAL195_0108
SACI56780 SYN_01250SYN_00604SYN_00632SYN_00632SYN_00288
RPOM246200 SPO_0306SPO_3558SPO_1794SPO_1794
RFER338969 RFER_3256RFER_4089RFER_3258RFER_3258
REUT381666 H16_A0643H16_B1453H16_B1454H16_B1454H16_B1455
RDEN375451 RD1_3410RD1_0974RD1_2895RD1_2895
PTHE370438 PTH_2610PTH_1713PTH_2705PTH_2705PTH_1693
PSTU379731 PST_0315PST_0165PST_0164PST_0164PST_2156
PPUT76869 PPUTGB1_0282PPUTGB1_0533PPUTGB1_0534PPUTGB1_0534PPUTGB1_0535
PPUT351746 PPUT_0272PPUT_0524PPUT_0525PPUT_0525PPUT_0526
PPUT160488 PP_0257PP_0490PP_0491PP_0491PP_0492
PMUL272843 PM0410PM0407PM0406PM0406PM0405
PLUM243265 PLU4885PLU4888PLU4889PLU4889PLU4896
PFLU205922 PFL_0280PFL_2699PFL_2700PFL_2700PFL_2701
PENT384676 PSEEN0241PSEEN0565PSEEN0566PSEEN0566PSEEN0567
PAER208964 PA5180PA4811PA4810PA4810PA4809
PAER208963 PA14_68430PA14_63580PA14_63570PA14_63570PA14_63550
OCAR504832 OCAR_6676OCAR_6767OCAR_5161OCAR_5161OCAR_5162
OANT439375 OANT_3819OANT_2864OANT_2865OANT_2865OANT_2866
MSUC221988 MS0893MS1029MS0889MS1028MS0843
MSP409 M446_2355M446_5827M446_3089M446_3089
MPET420662 MPE_A3711MPE_A0859MPE_A1173MPE_A1173
MMAG342108 AMB2017AMB1649AMB2674AMB2674
MCAP243233 MCA_1390MCA_1209MCA_1208MCA_1208
KPNE272620 GKPORF_B3533GKPORF_B3530GKPORF_B3529GKPORF_B0954GKPORF_B3528
HINF71421 HI_0005HI_0007HI_0008HI_0008HI_0009
HINF374930 CGSHIEE_03295CGSHIEE_03280CGSHIEE_03275CGSHIEE_03275CGSHIEE_03270
HINF281310 NTHI0006NTHI0010NTHI0011NTHI0011NTHI0012
HDUC233412 HD_1113HD_0349HD_1111HD_1111HD_1110
HARS204773 HEAR3431HEAR3343HEAR1415HEAR1415
GURA351605 GURA_3370GURA_3373GURA_3372GURA_3372GURA_3371
ESP42895 ENT638_4083ENT638_4086ENT638_4087ENT638_2052ENT638_4088
EFER585054 EFER_3881EFER_3884EFER_3885EFER_1492EFER_3886
ECOO157 FDHDFDOHFDOIFDNIFDHE
ECOL83334 ECS4821ECS4819ECS4818ECS2080ECS4817
ECOL585397 ECED1_4599ECED1_4596ECED1_4595ECED1_1627ECED1_4594
ECOL585057 ECIAI39_3103ECIAI39_3106ECIAI39_3107ECIAI39_1739ECIAI39_3108
ECOL585056 ECUMN_4426ECUMN_4423ECUMN_4422ECUMN_1730ECUMN_4421
ECOL585055 EC55989_4373EC55989_4370EC55989_4369EC55989_1608EC55989_4368
ECOL585035 ECS88_4344ECS88_4341ECS88_4340ECS88_1569ECS88_4339
ECOL585034 ECIAI1_4100ECIAI1_4097ECIAI1_4096ECIAI1_1480ECIAI1_4095
ECOL481805 ECOLC_4122ECOLC_4125ECOLC_4126ECOLC_2181ECOLC_4127
ECOL469008 ECBD_4130ECBD_4132ECBD_4133ECBD_2163ECBD_4134
ECOL439855 ECSMS35_4282ECSMS35_4279ECSMS35_4278ECSMS35_1698ECSMS35_4277
ECOL413997 ECB_03780ECB_03778ECB_03777ECB_01434ECB_03776
ECOL409438 ECSE_4182ECSE_4179ECSE_4178ECSE_1565ECSE_4177
ECOL405955 APECO1_2570APECO1_2572APECO1_2573APECO1_611APECO1_2574
ECOL364106 UTI89_C4482UTI89_C4480UTI89_C4479UTI89_C1692UTI89_C4478
ECOL362663 ECP_4108ECP_4105ECP_4104ECP_1477ECP_4103
ECOL331111 ECE24377A_4425ECE24377A_4422ECE24377A_4421ECE24377A_1658ECE24377A_4420
ECOL316407 ECK3888:JW3866:B3895ECK3886:JW3864:B3893ECK3885:JW3863:B3892ECK1470:JW1472:B1476ECK3884:JW3862:B3891
ECOL199310 C4847C4843C4842C1907C4841
ECAR218491 ECA0093ECA1407ECA1406ECA1406ECA3002
DSHI398580 DSHI_3282DSHI_1237DSHI_0506DSHI_0506
DHAF138119 DSY4290DSY3100DSY3099DSY3099
DDES207559 DDE_3516DDE_0718DDE_0680DDE_0706
DARO159087 DARO_1817DARO_1816DARO_1816DARO_1815
CVIO243365 CV_1624CV_3840CV_3841CV_3841CV_3842
CSP501479 CSE45_0204CSE45_3304CSE45_5342CSE45_5342
CJEJ407148 C8J_1411C8J_1484C8J_1412C8J_1412
CJEJ354242 CJJ81176_1500CJJ81176_1571CJJ81176_1501CJJ81176_1501
CHYD246194 CHY_0800CHY_0794CHY_0795CHY_0795CHY_0796
BXEN266265 BXE_B2552BXE_B2551BXE_B2551BXE_B2550
BVIE269482 BCEP1808_2818BCEP1808_4487BCEP1808_4488BCEP1808_4488BCEP1808_4489
BTHA271848 BTH_I0569BTH_II0708BTH_II0709BTH_II0709BTH_II0710
BSP36773 BCEP18194_C6967BCEP18194_B2099BCEP18194_B2098BCEP18194_B2098BCEP18194_B2097
BPSE320373 BURPS668_0684BURPS668_A2395BURPS668_A2394BURPS668_A2394BURPS668_A2393
BPSE320372 BURPS1710B_A0910BURPS1710B_B0860BURPS1710B_B0859BURPS1710B_B0859BURPS1710B_B0858
BPSE272560 BPSL0652BPSS1666BPSS1665BPSS1665BPSS1664
BMAL320389 BMA10247_2414BMA10247_A0572BMA10247_A0573BMA10247_A0573BMA10247_A0574
BMAL320388 BMASAVP1_A2744BMASAVP1_1693BMASAVP1_1694BMASAVP1_1694BMASAVP1_1695
BMAL243160 BMA_0201BMA_A1682BMA_A1681BMA_A1681BMA_A1680
BCEN331272 BCEN2424_6406BCEN2424_3985BCEN2424_3986BCEN2424_3986BCEN2424_3987
BCEN331271 BCEN_1423BCEN_4381BCEN_4380BCEN_4380BCEN_4379
BAMB398577 BAMMC406_6444BAMMC406_3880BAMMC406_3881BAMMC406_3881BAMMC406_3882
BAMB339670 BAMB_5686BAMB_3378BAMB_3379BAMB_3379BAMB_3380
ASP76114 EBA5392EBA3055EBA2933EBA2933
ASP232721 AJS_3459AJS_2422AJS_3461AJS_3461
APLE434271 APJL_0903APJL_0906APJL_0907APJL_0907APJL_0908
APLE416269 APL_0891APL_0894APL_0895APL_0895APL_0896
AHYD196024 AHA_2492AHA_2525AHA_3061AHA_3061
ADEH290397 ADEH_0826ADEH_3755ADEH_3756ADEH_3756ADEH_3757
ACAU438753 AZC_3455AZC_1158AZC_1157AZC_1157AZC_1156
ABAU360910 BAV0815BAV3144BAV3145BAV3145BAV3146
ABAC204669 ACID345_0869ACID345_0870ACID345_0870ACID345_0456
AAEO224324 AQ_1046AQ_1049AQ_1049AQ_1051


Organism features enriched in list (features available for 117 out of the 124 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.005185132112
Disease:Bubonic_plague 0.000058866
Disease:Dysentery 0.000058866
Disease:Gastroenteritis 0.00001181013
Disease:Glanders_and_pneumonia 0.007917233
Disease:Melioidosis 0.007917233
Disease:Opportunistic_infections 0.000303755
Disease:chronic_bronchitis 0.007917233
Endospores:No 0.000304127211
Endospores:Yes 0.0018894353
GC_Content_Range4:0-40 2.199e-186213
GC_Content_Range4:40-60 7.360e-1074224
GC_Content_Range7:30-40 2.815e-126166
GC_Content_Range7:50-60 1.253e-844107
GC_Content_Range7:60-70 0.008491836134
Genome_Size_Range5:0-2 3.919e-107155
Genome_Size_Range5:2-4 9.435e-915197
Genome_Size_Range5:4-6 9.439e-1978184
Genome_Size_Range5:6-10 0.00350921747
Genome_Size_Range9:1-2 2.268e-77128
Genome_Size_Range9:2-3 5.592e-68120
Genome_Size_Range9:3-4 0.0033077777
Genome_Size_Range9:4-5 1.842e-73996
Genome_Size_Range9:5-6 9.149e-93988
Genome_Size_Range9:6-8 0.00239041538
Gram_Stain:Gram_Neg 1.809e-19107333
Gram_Stain:Gram_Pos 9.514e-152150
Habitat:Multiple 0.000625650178
Motility:No 1.058e-97151
Motility:Yes 2.321e-880267
Optimal_temp.:- 0.007979662257
Oxygen_Req:Aerobic 0.000039520185
Oxygen_Req:Anaerobic 0.00050049102
Oxygen_Req:Facultative 5.168e-1171201
Pathogenic_in:Human 0.000873457213
Pathogenic_in:No 0.000361330226
Shape:Coccus 5.111e-6382
Shape:Rod 3.163e-1098347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 432
Effective number of orgs (counting one per cluster within 468 clusters): 332

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP56811 Psychrobacter sp.1
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp1
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-51
PFLU216595 ncbi Pseudomonas fluorescens SBW251
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MXAN246197 ncbi Myxococcus xanthus DK 16221
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL11
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.921
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1681
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP11
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG11859   EG11857   EG11856   EG11229   EG10284   
ZMOB264203
XORY360094 XOOORF_1913
XORY342109 XOO2631
XORY291331 XOO2790
XFAS405440
XFAS183190
XFAS160492
XCAM487884 XCC-B100_1817
XCAM316273 XCAORF_2634
XCAM314565 XC_1761
XCAM190485 XCC2355
XAXO190486 XAC2487
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1644
TWHI218496
TWHI203267
TVOL273116 TVN0245
TTUR377629
TTHE300852 TTHB196
TTHE262724 TT_P0138
TTEN273068
TSP28240
TSP1755
TROS309801 TRD_1973
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TKOD69014 TK2075
TFUS269800 TFU_1624
TERY203124 TERY_0406
TELO197221
TDEN326298 TMDEN_0817
TDEN292415 TBD_1739
TDEN243275
TCRU317025
TACI273075 TA0423
STRO369723
STOK273063 ST0084
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057 SSO2821
SSAP342451 SSP0627
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808 SH0772
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO SCO6558
SAUR93062 SACOL2273
SAUR93061 SAOUHSC_02550
SAUR426430 NWMN_2180
SAUR418127 SAHV_2264
SAUR367830 SAUSA300_2231
SAUR359787 SAURJH1_2347
SAUR359786 SAURJH9_2305
SAUR282459 SAS2170
SAUR282458 SAR2364
SAUR273036 SAB2152
SAUR196620 MW2198
SAUR158879 SA2075
SAUR158878 SAV2280
SARE391037
SALA317655 SALA_0188
SAGA211110
SAGA208435
SAGA205921
SACI330779 SACI_0318
RTYP257363
RSPH349102 RSPH17025_2852
RSPH349101 RSPH17029_2742
RSPH272943 RSP_1081
RSP101510 RHA1_RO02584
RSAL288705 RSAL33209_0509
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_0723
RPAL316057 RPD_0622
RPAL316056 RPC_4562
RPAL316055 RPE_4646
RPAL258594 RPA0735
RMAS416276
RLEG216596 RL4390
RFEL315456
RETL347834 RHE_CH03856
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO1037
PSP56811 PSYCPRWF_0335
PSP117
PRUM264731
PPEN278197
PMOB403833
PMEN399739 PMEN_0391
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616 PISL_1995
PINT246198
PING357804 PING_2123
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664 PFL_3724
PFLU216595 PFLU0279
PDIS435591
PCRY335284 PCRYO_1603
PCAR338963 PCAR_1840
PATL342610 PATL_2845
PAST100379
PARS340102 PARS_0953
PARC259536 PSYC_1443
PAER178306 PAE2661
PACN267747 PPA0516
PABY272844
OTSU357244
OIHE221109
NWIN323098
NSP387092 NIS_1818
NSP35761 NOCA_2698
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156 NFA13390
NEUT335283
NEUR228410
NARO279238 SARO_0737
MXAN246197 MXAN_7414
MVAN350058 MVAN_4033
MTUB419947 MRA_2924
MTUB336982 TBFG_12913
MTHE349307 MTHE_0035
MTHE187420 MTH1547
MTBRV RV2899C
MTBCDC MT2967
MSYN262723
MSTA339860
MSP400668 MMWYL1_3012
MSED399549 MSED_1320
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1506
MMAR444158 MMARC6_1440
MMAR426368 MMARC7_0479
MMAR402880 MMARC5_0358
MMAR394221 MMAR10_2685
MMAR368407 MEMAR_1042
MMAR267377 MMP1233
MLEP272631
MLAB410358 MLAB_0990
MKAN190192
MJAN243232 MJ_0295
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2019
MGIL350054 MFLV_2593
MGEN243273
MFLO265311
MFLA265072 MFLA_0719
MCAP340047
MBUR259564 MBUR_0280
MBOV410289 BCG_2920C
MBOV233413 MB2923C
MBAR269797 MBAR_A1386
MAVI243243 MAV_3753
MART243272
MAQU351348
MAER449447
MAEO419665 MAEO_1248
MACE188937 MA0220
MABS561007 MAB_1592C
LXYL281090
LWEL386043 LWE2534
LSPH444177 BSPH_3322
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669 LMOF2365_2556
LMON169963 LMO2584
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626 LIN2729
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400 HSM_1377
HSOM205914 HS_0899
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761 HM1_2003
HMAR272569
HCHE349521
HAUR316274
HACI382638
GVIO251221
GTHE420246 GTNG_0466
GOXY290633
GKAU235909 GK0461
GFOR411154
GBET391165 GBCGDNIH1_1935
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413 FMG_0290
FJOH376686
FALN326424 FRAAL2446
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DRAD243230
DNOD246195
DGEO319795 DGEO_2744
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78 CAUL_1609
CRUT413404
CPSY167879 CPS_2059
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992 SAR11_0681
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442 MBOO_2122
CMAQ397948
CKOR374847 KCR_0761
CKLU431943
CJEI306537
CJAP155077
CHUT269798
CGLU196627 CG0616
CFEL264202
CEFF196164 CE0538
CDIP257309
CDIF272563 CD3316
CCUR360105 CCV52592_1778
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402 CBEI_3798
CAULO CC1242
CACE272562
CABO218497
BWEI315730 BCERKBAB4_0501
BTUR314724
BTRI382640
BTHU412694 BALH_0528
BTHU281309 BT9727_0498
BTHE226186
BSUI470137 BSUIS_B0681
BSUI204722
BSUB BSU36710
BSP376 BRADO4978
BSP107806
BQUI283165 BQ11020
BPUM315750 BPUM_3315
BOVI236
BMEL359391 BAB2_0544
BMEL224914 BMEII0588
BLON206672
BLIC279010 BL04008
BHER314723
BHEN283166
BHAL272558 BH2527
BGAR290434
BFRA295405
BFRA272559
BCLA66692 ABC0902
BCIC186490
BCER572264 BCA_0620
BCER405917 BCE_0654
BCER315749 BCER98_0504
BCER288681 BCE33L0500
BCER226900 BC_3570
BCAN483179 BCAN_B0696
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021 BAA_0671
BANT568206 BAMEG_3998
BANT261594 GBAA0588
BANT260799 BAS0556
BAMY326423 RBAM_033880
BAFZ390236
BABO262698 BRUAB2_0534
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977 ACIAD1916
ASP1667 ARTH_0802
APHA212042
APER272557
AORE350688 CLOS_0569
ANAE240017
AMET293826 AMET_1000
AMAR329726
AMAR234826
ALAI441768
AFUL224325 AF_0372
AFER243159 AFE_2350
ACEL351607 ACEL_0667
ABUT367737 ABU_1495
ABOR393595
AAVE397945 AAVE_3826
AAUR290340 AAUR_1024


Organism features enriched in list (features available for 402 out of the 432 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00583017392
Disease:Gastroenteritis 0.0000802213
Endospores:No 0.0001735164211
Endospores:Yes 0.00112344653
GC_Content_Range4:0-40 2.030e-25199213
GC_Content_Range4:40-60 3.398e-6130224
GC_Content_Range4:60-100 9.148e-972145
GC_Content_Range7:0-30 1.057e-84747
GC_Content_Range7:30-40 1.038e-15152166
GC_Content_Range7:50-60 5.852e-752107
GC_Content_Range7:60-70 2.620e-866134
Genome_Size_Range5:0-2 7.674e-11137155
Genome_Size_Range5:2-4 1.807e-10168197
Genome_Size_Range5:4-6 1.106e-1979184
Genome_Size_Range5:6-10 4.490e-61847
Genome_Size_Range9:0-1 0.00003302727
Genome_Size_Range9:1-2 4.875e-7110128
Genome_Size_Range9:2-3 6.986e-9107120
Genome_Size_Range9:4-5 3.198e-94196
Genome_Size_Range9:5-6 3.184e-83888
Genome_Size_Range9:6-8 0.00001891438
Gram_Stain:Gram_Neg 1.260e-17184333
Gram_Stain:Gram_Pos 3.893e-12135150
Habitat:Host-associated 0.0008056158206
Habitat:Multiple 0.0000590103178
Motility:No 1.924e-8130151
Motility:Yes 4.164e-9152267
Optimal_temp.:- 0.0093901166257
Optimal_temp.:30-37 0.00110011818
Oxygen_Req:Aerobic 0.0026123141185
Oxygen_Req:Facultative 0.0000467118201
Oxygen_Req:Microaerophilic 0.0013841618
Shape:Coccus 1.821e-77582
Shape:Rod 1.012e-8209347
Shape:Sphere 0.00669591819



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301100.5350
AST-PWY (arginine degradation II (AST pathway))120740.5109
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181040.5109
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176920.5087
GALACTITOLCAT-PWY (galactitol degradation)73550.5058
ECASYN-PWY (enterobacterial common antigen biosynthesis)191920.4707
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195930.4698
GLYCOCAT-PWY (glycogen degradation I)2461050.4609
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)225990.4538
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149770.4462
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001150.4448
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50400.4446
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45370.4355
PWY-46 (putrescine biosynthesis III)138720.4311
PWY0-1182 (trehalose degradation II (trehalase))70470.4209
PWY-1269 (CMP-KDO biosynthesis I)3251160.4130
GLUCARDEG-PWY (D-glucarate degradation I)152740.4095
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212900.4056
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112610.4052
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911080.4035
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961090.4032
PWY-5913 (TCA cycle variation IV)3011100.4030
GLUTDEG-PWY (glutamate degradation II)194850.4027



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11857   EG11856   EG11229   EG10284   
EG118590.998720.9991020.9985210.998757
EG118570.9995350.9993340.999481
EG118560.9998040.999518
EG112290.999304
EG10284



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PAIRWISE BLAST SCORES:

  EG11859   EG11857   EG11856   EG11229   EG10284   
EG118590.0f0----
EG11857-0.0f0---
EG11856--0.0f02.4e-56-
EG11229--4.4e-480.0f0-
EG10284----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.400, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9991 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9994 0.9987 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10284 (fdhE) EG10284-MONOMER (formate dehydrogenase formation protein)
   *in cand* 0.9994 0.9985 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9990 0.9985 EG11859 (fdhD) EG11859-MONOMER (affects formate dehydrogenase-N)

- PWY0-1355 (formate to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.300, degree of match cand to pw: 0.600, average score: 0.730)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9985 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
             0.9991 0.9973 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9996 0.9991 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9994 0.9987 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.4235 0.1666 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
             0.4968 0.2764 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
             0.4805 0.2001 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.5370 0.4273 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10284 (fdhE) EG10284-MONOMER (formate dehydrogenase formation protein)
   *in cand* 0.9990 0.9985 EG11859 (fdhD) EG11859-MONOMER (affects formate dehydrogenase-N)

- PWY0-1321 (formate to nitrate electron transfer) (degree of match pw to cand: 0.250, degree of match cand to pw: 0.600, average score: 0.844)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9985 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
             0.9991 0.9973 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9996 0.9991 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9994 0.9987 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.5714 0.3036 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
             0.6499 0.3157 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
             0.4906 0.2699 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
             0.4910 0.2341 EG10644 (narV) NARV-MONOMER (nitrate reductase Z, γ subunit)
             0.5107 0.2352 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
             0.6525 0.1611 EG10647 (narY) NARY-MONOMER (nitrate reductase Z, β subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10284 (fdhE) EG10284-MONOMER (formate dehydrogenase formation protein)
   *in cand* 0.9990 0.9985 EG11859 (fdhD) EG11859-MONOMER (affects formate dehydrogenase-N)

- PWY0-1356 (formate to dimethyl sulfoxide electron transfer) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.600, average score: 0.903)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9985 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
             0.9991 0.9973 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9996 0.9991 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9994 0.9987 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.5642 0.2491 EG10234 (dmsC) DMSC-MONOMER (dimethyl sulfoxide reductase, chain C)
             0.9896 0.9590 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
             0.4569 0.1142 EG10232 (dmsA) DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10284 (fdhE) EG10284-MONOMER (formate dehydrogenase formation protein)
   *in cand* 0.9990 0.9985 EG11859 (fdhD) EG11859-MONOMER (affects formate dehydrogenase-N)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10284 EG11856 EG11857 EG11859 (centered at EG11857)
EG11229 (centered at EG11229)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11859   EG11857   EG11856   EG11229   EG10284   
323/623166/623167/623157/623113/623
AAEO224324:0:Tyes-0113
AAUR290340:2:Tyes0----
AAVE397945:0:Tyes0----
ABAC204669:0:Tyes-4164174170
ABAU360910:0:Tyes02341234223422343
ABUT367737:0:Tyes0----
ACAU438753:0:Tyes23222110
ACEL351607:0:Tyes0----
ACRY349163:8:Tyes01816---
ADEH290397:0:Tyes02962296329632964
AEHR187272:0:Tyes-38400-
AFER243159:0:Tyes0----
AFUL224325:0:Tyes0----
AHYD196024:0:Tyes032557557-
AMET293826:0:Tyes0----
AORE350688:0:Tyes0----
APLE416269:0:Tyes03445
APLE434271:0:Tno03445
ASAL382245:5:Tyes340---
ASP1667:3:Tyes0----
ASP232721:2:Tyes1002010041004-
ASP62928:0:Tyes9-00-
ASP62977:0:Tyes0----
ASP76114:2:Tyes14417600-
BABO262698:0:Tno0----
BAMB339670:1:Tno0----
BAMB339670:2:Tno-0112
BAMB398577:1:Tno0----
BAMB398577:2:Tno-0112
BAMY326423:0:Tyes0----
BANT260799:0:Tno0----
BANT261594:2:Tno0----
BANT568206:2:Tyes0----
BANT592021:2:Tno0----
BBRO257310:0:Tyes0-826826-
BCAN483179:0:Tno0----
BCEN331271:1:Tno-2110
BCEN331271:2:Tno0----
BCEN331272:1:Tyes0----
BCEN331272:2:Tyes-0112
BCER226900:1:Tyes0----
BCER288681:0:Tno0----
BCER315749:1:Tyes0----
BCER405917:1:Tyes0----
BCER572264:1:Tno0----
BCLA66692:0:Tyes0----
BHAL272558:0:Tyes0----
BJAP224911:0:Fyes0-23552355-
BLIC279010:0:Tyes0----
BMAL243160:0:Tno-2110
BMAL243160:1:Tno0----
BMAL320388:0:Tno-0112
BMAL320388:1:Tno0----
BMAL320389:0:Tyes-0112
BMAL320389:1:Tyes0----
BMEL224914:0:Tno0----
BMEL359391:0:Tno0----
BPAR257311:0:Tno0-790790-
BPER257313:0:Tyes--00-
BPET94624:0:Tyes0-975975-
BPSE272560:0:Tyes-2110
BPSE272560:1:Tyes0----
BPSE320372:0:Tno-2110
BPSE320372:1:Tno0----
BPSE320373:0:Tno-2110
BPSE320373:1:Tno0----
BPUM315750:0:Tyes0----
BQUI283165:0:Tyes----0
BSP36773:0:Tyes0----
BSP36773:1:Tyes-2110
BSP376:0:Tyes0----
BSUB:0:Tyes0----
BSUI470137:0:Tno0----
BTHA271848:0:Tno-0112
BTHA271848:1:Tno0----
BTHU281309:1:Tno0----
BTHU412694:1:Tno0----
BVIE269482:6:Tyes-0112
BVIE269482:7:Tyes0----
BWEI315730:4:Tyes0----
BXEN266265:1:Tyes-0112
CAULO:0:Tyes0----
CBEI290402:0:Tyes0----
CCON360104:2:Tyes0-110110-
CCUR360105:0:Tyes--0--
CDES477974:0:Tyes4322--0
CDIF272563:1:Tyes0----
CEFF196164:0:Fyes0----
CFET360106:0:Tyes--00-
CGLU196627:0:Tyes0----
CHOM360107:1:Tyes--00-
CHYD246194:0:Tyes60112
CJEJ192222:0:Tyes0-11-
CJEJ195099:0:Tno0-11-
CJEJ354242:2:Tyes07111-
CJEJ360109:0:Tyes0-11-
CJEJ407148:0:Tno07311-
CKOR374847:0:Tyes-0---
CMET456442:0:Tyes0----
CPEL335992:0:Tyes0----
CPSY167879:0:Tyes0----
CSAL290398:0:Tyes824-00-
CSP501479:2:Fyes--00-
CSP501479:7:Fyes-0---
CSP501479:8:Fyes0----
CSP78:2:Tyes0----
CVIO243365:0:Tyes02263226422642265
DARO159087:0:Tyes-2110
DDES207559:0:Tyes2883390-27
DETH243164:0:Tyes-0--70
DGEO319795:0:Tyes0----
DHAF138119:0:Tyes1197100-
DOLE96561:0:Tyes2081--0
DPSY177439:2:Tyes0-12351235-
DRED349161:0:Tyes24240--654
DSHI398580:5:Tyes280874200-
DSP216389:0:Tyes-87--0
DSP255470:0:Tno-0--53
DVUL882:1:Tyes11893--0
ECAR218491:0:Tyes01339133813382936
ECOL199310:0:Tno28972894289302892
ECOL316407:0:Tno18911893189401895
ECOL331111:6:Tno26602658265702656
ECOL362663:0:Tno26252624262302622
ECOL364106:1:Tno27742772277102770
ECOL405955:2:Tyes25042501250002499
ECOL409438:6:Tyes26752672267102670
ECOL413997:0:Tno23702368236702366
ECOL439855:4:Tno24982495249402493
ECOL469008:0:Tno19631965196601967
ECOL481805:0:Tno19561958195901960
ECOL585034:0:Tno25702568256702566
ECOL585035:0:Tno26832681268002679
ECOL585055:0:Tno27182716271502714
ECOL585056:2:Tno26872685268402683
ECOL585057:0:Tno13541356135701358
ECOL585397:0:Tno28982896289502894
ECOL83334:0:Tno28202819281802817
ECOLI:0:Tno24642462246102460
ECOO157:0:Tno29332931293002929
EFER585054:1:Tyes23732375237602377
ESP42895:1:Tyes20542057205802059
FALN326424:0:Tyes0----
FMAG334413:1:Tyes0----
FSP1855:0:Tyes0-4138--
GBET391165:0:Tyes0----
GKAU235909:1:Tyes0----
GMET269799:1:Tyes5654--0
GSUL243231:0:Tyes20---
GTHE420246:1:Tyes0----
GURA351605:0:Tyes03221
HARS204773:0:Tyes1908182600-
HBUT415426:0:Tyes-01--
HDUC233412:0:Tyes6790677677676
HHAL349124:0:Tyes-7710--
HHEP235279:0:Tyes0-11-
HINF281310:0:Tyes01223
HINF374930:0:Tyes52110
HINF71421:0:Tno02334
HMOD498761:0:Tyes0----
HSOM205914:1:Tyes-0---
HSOM228400:0:Tno-0---
JSP290400:1:Tyes11310---
JSP375286:0:Tyes1701-00-
KPNE272620:2:Tyes25322529252802527
KRAD266940:2:Fyes28170---
LCHO395495:0:Tyes0-974974-
LINN272626:1:Tno0----
LMON169963:0:Tno0----
LMON265669:0:Tyes0----
LSPH444177:1:Tyes0----
LWEL386043:0:Tyes0----
MABS561007:1:Tyes0----
MACE188937:0:Tyes0----
MAEO419665:0:Tyes0----
MAVI243243:0:Tyes0----
MBAR269797:1:Tyes0----
MBOV233413:0:Tno0----
MBOV410289:0:Tno0----
MBUR259564:0:Tyes0----
MCAP243233:0:Tyes175100-
MEXT419610:0:Tyes2888-00-
MFLA265072:0:Tyes0----
MGIL350054:3:Tyes0----
MHUN323259:0:Tyes0----
MJAN243232:2:Tyes0----
MLAB410358:0:Tyes0----
MLOT266835:2:Tyes0177---
MMAG342108:0:Tyes368010251025-
MMAR267377:0:Tyes0----
MMAR368407:0:Tyes0----
MMAR394221:0:Tyes0----
MMAR402880:1:Tyes0----
MMAR426368:0:Tyes0----
MMAR444158:0:Tyes0----
MMAZ192952:0:Tyes0----
MPET420662:1:Tyes28450313313-
MSED399549:0:Tyes0----
MSME246196:0:Tyes28010---
MSP164756:1:Tno01670---
MSP164757:0:Tno02038---
MSP189918:2:Tyes01686---
MSP266779:3:Tyes0-2020-
MSP400668:0:Tyes0----
MSP409:2:Tyes03355701701-
MSUC221988:0:Tyes51189471880
MTBCDC:0:Tno0----
MTBRV:0:Tno0----
MTHE187420:0:Tyes0----
MTHE264732:0:Tyes168201--
MTHE349307:0:Tyes0----
MTUB336982:0:Tno0----
MTUB419947:0:Tyes0----
MVAN350058:0:Tyes0----
MXAN246197:0:Tyes0----
NARO279238:0:Tyes0----
NFAR247156:2:Tyes0----
NHAM323097:2:Tyes4-00-
NSP35761:1:Tyes0----
NSP387092:0:Tyes-0---
OANT439375:4:Tyes9530112
OCAR504832:0:Tyes15131604001
PACN267747:0:Tyes-0---
PAER178306:0:Tyes-0---
PAER208963:0:Tyes3812110
PAER208964:0:Tno3742110
PARC259536:0:Tyes0----
PARS340102:0:Tyes-0---
PATL342610:0:Tyes0----
PCAR338963:0:Tyes0----
PCRY335284:1:Tyes0----
PENT384676:0:Tyes0306307307308
PFLU205922:0:Tyes02451245224522453
PFLU216595:1:Tyes0----
PFLU220664:0:Tyes0----
PING357804:0:Tyes0----
PISL384616:0:Tyes-0---
PLUM243265:0:Fyes034411
PMEN399739:0:Tyes0----
PMUL272843:1:Tyes52110
PNAP365044:8:Tyes2-00-
PPRO298386:2:Tyes8-00-
PPUT160488:0:Tno0232233233234
PPUT351746:0:Tyes0260261261262
PPUT76869:0:Tno0259260260261
PSP296591:2:Tyes--00-
PSP312153:0:Tyes0-765765-
PSP56811:2:Tyes0----
PSTU379731:0:Tyes1511001983
PSYR205918:0:Tyes1590-0--
PSYR223283:2:Tyes1784-0--
PTHE370438:0:Tyes92320101810180
PTOR263820:0:Tyes0----
RCAS383372:0:Tyes21790---
RDEN375451:4:Tyes2290018031803-
RETL347834:5:Tyes0----
REUT264198:3:Tyes0-6565-
REUT381666:1:Tyes-0112
REUT381666:2:Tyes0----
RFER338969:1:Tyes083322-
RLEG216596:6:Tyes0----
RMET266264:2:Tyes0-21892189-
RPAL258594:0:Tyes0----
RPAL316055:0:Tyes0----
RPAL316056:0:Tyes0----
RPAL316057:0:Tyes0----
RPAL316058:0:Tyes0----
RPOM246200:1:Tyes0318614621462-
RSAL288705:0:Tyes0----
RSOL267608:0:Tyes0----
RSOL267608:1:Tyes--00-
RSP101510:3:Fyes0----
RSP357808:0:Tyes22070---
RSPH272943:4:Tyes0----
RSPH349101:2:Tno0----
RSPH349102:5:Tyes0----
RXYL266117:0:Tyes02569---
SACI330779:0:Tyes0----
SACI56780:0:Tyes23802266002622
SALA317655:1:Tyes0----
SAUR158878:1:Tno0----
SAUR158879:1:Tno0----
SAUR196620:0:Tno0----
SAUR273036:0:Tno0----
SAUR282458:0:Tno0----
SAUR282459:0:Tno0----
SAUR359786:1:Tno0----
SAUR359787:1:Tno0----
SAUR367830:3:Tno0----
SAUR418127:0:Tyes0----
SAUR426430:0:Tno0----
SAUR93061:0:Fno0----
SAUR93062:1:Tno0----
SAVE227882:1:Fyes0-4859--
SBAL399599:3:Tyes60112
SBAL402882:1:Tno60112
SBOY300268:1:Tyes22112210220902208
SCO:2:Fyes0----
SDYS300267:1:Tyes20922093209402095
SENT209261:0:Tno01223
SENT220341:0:Tno01223
SENT295319:0:Tno24792478247702476
SENT321314:2:Tno24012400239902398
SENT454169:2:Tno25112508250702506
SERY405948:0:Tyes9400---
SFLE198214:0:Tyes21542153215202151
SFLE373384:0:Tno17621764176501766
SFUM335543:0:Tyes03--4
SHAE279808:0:Tyes0----
SHAL458817:0:Tyes60112
SHIGELLA:0:Tno16531655165601657
SLAC55218:1:Fyes078524602460-
SLOI323850:0:Tyes032011212-
SMED366394:1:Tyes--00-
SMED366394:3:Tyes0----
SMEL266834:0:Tyes-0112
SMEL266834:2:Tyes0----
SONE211586:1:Tyes50112
SPEA398579:0:Tno60112
SPRO399741:1:Tyes03445
SSAP342451:2:Tyes0----
SSED425104:0:Tyes1535015231523-
SSOL273057:0:Tyes0----
SSON300269:1:Tyes22902289228802287
SSP292414:1:Tyes0----
SSP292414:2:Tyes--00-
SSP644076:4:Fyes0----
SSP644076:7:Fyes--00-
SSP94122:1:Tyes02047204820482049
STHE292459:0:Tyes30833088003090
STOK273063:0:Tyes0----
STYP99287:1:Tyes24552454245302452
SWOL335541:0:Tyes2272100410
TACI273075:0:Tyes0----
TDEN292415:0:Tyes-0---
TDEN326298:0:Tyes0----
TERY203124:0:Tyes0----
TFUS269800:0:Tyes0----
TKOD69014:0:Tyes-0---
TPEN368408:1:Tyes12011351--0
TROS309801:1:Tyes-0---
TTHE262724:0:Tyes0----
TTHE300852:1:Tyes0----
TVOL273116:0:Tyes0----
UMET351160:0:Tyes0----
VCHO:0:Tyes7-00-
VCHO345073:1:Tno8-00-
VEIS391735:1:Tyes01595---
VFIS312309:1:Tyes-0---
VFIS312309:2:Tyes9-0--
VPAR223926:0:Tyes0----
VPAR223926:1:Tyes-41200-
VVUL196600:2:Tyes4560448448-
VVUL216895:1:Tno042488-
WSUC273121:0:Tyes1960195195-
XAUT78245:1:Tyes28312110
XAXO190486:0:Tyes0----
XCAM190485:0:Tyes0----
XCAM314565:0:Tno0----
XCAM316273:0:Tno0----
XCAM487884:0:Tno0----
XORY291331:0:Tno0----
XORY342109:0:Tyes0----
XORY360094:0:Tno0----
YENT393305:1:Tyes42110
YPES187410:5:Tno32110
YPES214092:3:Tno32110
YPES349746:2:Tno42110
YPES360102:3:Tyes03445
YPES377628:2:Tno52110
YPES386656:2:Tno03445
YPSE273123:2:Tno01223
YPSE349747:2:Tno42110



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