CANDIDATE ID: 680

CANDIDATE ID: 680

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9885230e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11485 (hemG) (b3850)
   Products of gene:
     - PROTOPORGENOXI-MONOMER (HemG)
     - CPLX0-7811 (protoporphyrinogen oxidase)
       Reactions:
        protoporphyrinogen IX + 3 oxygen  ->  protoporphyrin IX + 3 hydrogen peroxide
         In pathways
         PWY-5918 (PWY-5918)
         PWY-5920 (PWY-5920)
         PWY-5529 (PWY-5529)
         HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)
         CHLOROPHYLL-SYN (CHLOROPHYLL-SYN)
         PWY-5531 (PWY-5531)
         PWY0-1415 (superpathway of heme biosynthesis from uroporphyrinogen-III)
        protoporphyrinogen IX + 3 a menaquinone  ->  protoporphyrin IX + 3 a menaquinol
         In pathways
         PWY0-1415 (superpathway of heme biosynthesis from uroporphyrinogen-III)
         HEMESYN2-PWY (heme biosynthesis from uroporphyrinogen-III II)

- EG11484 (yigZ) (b3848)
   Products of gene:
     - EG11484-MONOMER (predicted elongation factor)

- EG11021 (trkH) (b3849)
   Products of gene:
     - TRKH-MONOMER (TrkH potassium ion Trk Transporter)
       Reactions:
        K+[periplasmic space] + H+[periplasmic space]  ->  K+[cytosol] + H+[cytosol]

- EG10698 (pepQ) (b3847)
   Products of gene:
     - EG10698-MONOMER (proline dipeptidase)
       Reactions:
        EC# 3.4.13.9

- EG10278 (fadA) (b3845)
   Products of gene:
     - FADA-MONOMER (3-ketoacyl-CoA thiolase)
     - FADA-CPLX (fatty acid oxidation complex, β component)
       Reactions:
        a 2,3,4-saturated fatty acyl CoA + acetyl-CoA  =  3-oxoacyl-CoA + coenzyme A
         In pathways
         PWY-561 (PWY-561)
         FAO-PWY (fatty acid β-oxidation I)
         PWY-5136 (PWY-5136)
     - FAO-CPLX (fatty acid oxidation complex)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 119
Effective number of orgs (counting one per cluster within 468 clusters): 72

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79015
TTHE300852 ncbi Thermus thermophilus HB84
TTHE262724 ncbi Thermus thermophilus HB274
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL15
MAQU351348 ncbi Marinobacter aquaeolei VT84
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
CTET212717 ncbi Clostridium tetani E884
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BBRO257310 ncbi Bordetella bronchiseptica RB504
ASP232721 ncbi Acidovorax sp. JS424
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABOR393595 ncbi Alcanivorax borkumensis SK24
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG11485   EG11484   EG11021   EG10698   EG10278   
YPSE349747 YPSIP31758_0287YPSIP31758_0285YPSIP31758_0286YPSIP31758_0284YPSIP31758_0282
YPSE273123 YPTB0271YPTB0269YPTB0270YPTB0268YPTB0266
YPES386656 YPDSF_3382YPDSF_3384YPDSF_3383YPDSF_3385YPDSF_3387
YPES377628 YPN_0204YPN_0202YPN_0203YPN_0199YPN_0197
YPES360102 YPA_3430YPA_3432YPA_3431YPA_3435YPA_3437
YPES349746 YPANGOLA_A1916YPANGOLA_A1914YPANGOLA_A1915YPANGOLA_A1913YPANGOLA_A1911
YPES214092 YPO3761YPO3762YPO3765YPO3767
YPES187410 Y0469Y0467Y0468Y0465Y0463
YENT393305 YE0273YE0272YE0269YE0267
VVUL216895 VV1_0978VV1_0980VV1_0979VV1_0982
VVUL196600 VV0033VV0030VV0031VV0028
VPAR223926 VP0033VP0031VP0032VP0029
VFIS312309 VF0028VF0026VF0027VF0024
VCHO345073 VC0395_A2537VC0395_A2535VC0395_A2536VC0395_A2533
VCHO VC2755VC2757VC2756VC2759
TTUR377629 TERTU_0857TERTU_2779TERTU_0033TERTU_0402TERTU_1621
TTHE300852 TTHA1053TTHA1173TTHA1068TTHA0987
TTHE262724 TT_C0689TT_C0809TT_C0703TT_C0623
STYP99287 STM3987STM3985STM3986STM3984STM3982
SSP94122 SHEWANA3_0871SHEWANA3_0026SHEWANA3_0027SHEWANA3_0025SHEWANA3_0023
SSON300269 SSO_4023SSO_4021SSO_4022SSO_4020SSO_4018
SSED425104 SSED_0029SSED_0025SSED_0026SSED_0024SSED_0022
SRUB309807 SRU_1184SRU_2271SRU_1805SRU_1211
SPRO399741 SPRO_0266SPRO_0264SPRO_0265SPRO_0263SPRO_0260
SPEA398579 SPEA_0026SPEA_0020SPEA_0021SPEA_0019SPEA_0017
SONE211586 SO_0027SO_0023SO_0024SO_0022SO_0020
SLOI323850 SHEW_0025SHEW_0021SHEW_0022SHEW_0020SHEW_0018
SHIGELLA HEMGYIGZTRKHPEPQFADA
SHAL458817 SHAL_0022SHAL_0018SHAL_0019SHAL_0017SHAL_0015
SGLO343509 SG0121SG0119SG0120SG0118
SFLE373384 SFV_3650SFV_3652SFV_3651SFV_3653SFV_3655
SFLE198214 AAN45361.1AAN45359.1AAN45360.1AAN45358.1AAN45356.1
SENT454169 SEHA_C4313SEHA_C4311SEHA_C4312SEHA_C4310SEHA_C4308
SENT321314 SCH_3883SCH_3882SCH_3881SCH_3879
SENT295319 SPA3827SPA3825SPA3826SPA3824SPA3822
SENT220341 STY3573STY3575STY3574STY3576STY3578
SENT209261 T3311T3313T3312T3314T3316
SDYS300267 SDY_3895SDY_3897SDY_3896SDY_3898SDY_3900
SDEN318161 SDEN_0019SDEN_0017SDEN_0018SDEN_0016SDEN_0014
SDEG203122 SDE_3126SDE_0017SDE_3513SDE_1606
SBOY300268 SBO_3862SBO_3860SBO_3861SBO_3859SBO_3857
SBAL402882 SHEW185_0022SHEW185_0018SHEW185_0019SHEW185_0017SHEW185_0015
SBAL399599 SBAL195_0026SBAL195_0022SBAL195_0023SBAL195_0021SBAL195_0019
PSYR223283 PSPTO_0770PSPTO_1801PSPTO_5223PSPTO_3516
PSYR205918 PSYR_0674PSYR_3593PSYR_0321PSYR_3289
PSTU379731 PST_3607PST_2457PST_4070PST_1727
PPUT76869 PPUTGB1_0638PPUTGB1_4013PPUTGB1_5260PPUTGB1_1677
PPUT351746 PPUT_0633PPUT_1404PPUT_5107PPUT_3605
PPUT160488 PP_0593PP_4507PP_5200PP_2137
PPRO298386 PBPRA0067PBPRA0065PBPRA0066PBPRA0063
PMUL272843 PM1499PM1497PM1498PM1724
PMEN399739 PMEN_3700PMEN_1826PMEN_0325PMEN_1581
PLUM243265 PLU4398PLU4400PLU4399PLU4401PLU4403
PING357804 PING_0198PING_0196PING_0197PING_0606PING_0659
PHAL326442 PSHAA0014PSHAA0015PSHAA0013PSHAA0010
PFLU220664 PFL_0729PFL_1589PFL_5968PFL_1941
PFLU216595 PFLU0671PFLU4861PFLU5880PFLU1554
PFLU205922 PFL_0682PFL_1479PFL_5434PFL_3878
PENT384676 PSEEN0678PSEEN3912PSEEN5315PSEEN3727
PATL342610 PATL_0605PATL_0016PATL_0199PATL_0202
PAER208964 PA0168PA3210PA5224PA3013
PAER208963 PA14_02100PA14_22690PA14_69000PA14_25090
MTHE264732 MOTH_0733MOTH_1755MOTH_1539MOTH_1260
MSUC221988 MS0176MS0174MS0175MS0479
MSP400668 MMWYL1_1487MMWYL1_2891MMWYL1_0013MMWYL1_3908MMWYL1_1579
MAQU351348 MAQU_2867MAQU_0037MAQU_0455MAQU_1145
KPNE272620 GKPORF_B3697GKPORF_B3695GKPORF_B3696GKPORF_B3694GKPORF_B3692
ILOI283942 IL0014IL1658IL0013IL0010
HSOM228400 HSM_0443HSM_0441HSM_0442HSM_1093HSM_0810
HSOM205914 HS_1569HS_1571HS_1570HS_0682
HINF71421 HI_0722HI_0723HI_0816HI_0771
HINF281310 NTHI0854NTHI0855NTHI0980NTHI0932
HCHE349521 HCH_06880HCH_00025HCH_07017HCH_04754
ESP42895 ENT638_3945ENT638_3947ENT638_3946ENT638_3948ENT638_3950
EFER585054 EFER_3631EFER_3633EFER_3632EFER_3634EFER_3636
ECOO157 HEMGYIGZTRKHPEPQFADA
ECOL83334 ECS4778ECS4776ECS4777ECS4775ECS4773
ECOL585397 ECED1_4552ECED1_4550ECED1_4551ECED1_4549ECED1_4547
ECOL585057 ECIAI39_3145ECIAI39_3147ECIAI39_3146ECIAI39_3148ECIAI39_3150
ECOL585056 ECUMN_4374ECUMN_4372ECUMN_4373ECUMN_4371ECUMN_4369
ECOL585055 EC55989_4325EC55989_4323EC55989_4324EC55989_4322EC55989_4320
ECOL585035 ECS88_4298ECS88_4296ECS88_4297ECS88_4295ECS88_4293
ECOL585034 ECIAI1_4043ECIAI1_4041ECIAI1_4042ECIAI1_4040ECIAI1_4038
ECOL481805 ECOLC_4160ECOLC_4162ECOLC_4161ECOLC_4163ECOLC_4165
ECOL469008 ECBD_4175ECBD_4177ECBD_4176ECBD_4178ECBD_4180
ECOL439855 ECSMS35_4231ECSMS35_4229ECSMS35_4230ECSMS35_4228ECSMS35_4226
ECOL413997 ECB_03741ECB_03739ECB_03740ECB_03738ECB_03736
ECOL409438 ECSE_4136ECSE_4134ECSE_4135ECSE_4133ECSE_4131
ECOL405955 APECO1_2607APECO1_2609APECO1_2608APECO1_2610APECO1_2612
ECOL364106 UTI89_C4435UTI89_C4433UTI89_C4434UTI89_C4432UTI89_C4430
ECOL362663 ECP_4063ECP_4061ECP_4062ECP_4060ECP_4058
ECOL331111 ECE24377A_4369ECE24377A_4367ECE24377A_4368ECE24377A_4366ECE24377A_4364
ECOL316407 ECK3842:JW3827:B3850ECK3840:JW5577:B3848ECK3841:JW5576:B3849ECK3839:JW3823:B3847ECK3837:JW5578:B3845
ECOL199310 C4797C4795C4796C4794C4792
ECAR218491 ECA0212ECA0210ECA0211ECA0209ECA0207
CTET212717 CTC_02216CTC_00235CTC_01592CTC_00312
CSAL290398 CSAL_0695CSAL_2873CSAL_0024CSAL_2392
CPSY167879 CPS_0014CPS_0015CPS_0013CPS_0392
CBOT536232 CLM_3479CLM_1494CLM_0643CLM_3612
CBOT515621 CLJ_B3339CLJ_B1432CLJ_B0619CLJ_B3472
CBOT498213 CLD_1466CLD_3240CLD_0207CLD_1331
CBOT441772 CLI_3133CLI_1412CLI_0620CLI_3339
CBOT441771 CLC_2976CLC_1356CLC_0465CLC_3110
CBOT441770 CLB_3103CLB_1346CLB_0581CLB_3236
CBOT36826 CBO3074CBO1319CBO0542CBO3200
BTHU281309 BT9727_4876BT9727_0695BT9727_3940BT9727_4718
BPET94624 BPET2555BPET4706BPET0911BPET2191
BPER257313 BP1712BP0574BP3411BP2759
BPAR257311 BPP3063BPP0264BPP3561BPP2569
BBRO257310 BB3026BB0267BB3996BB2014
ASP232721 AJS_3042AJS_3911AJS_3957AJS_0595
ASP1667 ARTH_3601ARTH_2068ARTH_2788ARTH_3268
ASAL382245 ASA_4245ASA_4247ASA_4246ASA_4248ASA_4251
APLE434271 APJL_1624APJL_1622APJL_1623APJL_0091
APLE416269 APL_1591APL_1589APL_1590APL_0091
AHYD196024 AHA_0144AHA_0142AHA_0143AHA_0141AHA_0138
AEHR187272 MLG_2174MLG_0654MLG_2542MLG_2125
ABOR393595 ABO_1619ABO_0127ABO_2600ABO_1653
AAVE397945 AAVE_2434AAVE_4543AAVE_4582AAVE_4085


Organism features enriched in list (features available for 113 out of the 119 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 7.355e-639112
Arrangment:Singles 0.000790570286
Disease:Botulism 0.000254455
Disease:Bubonic_plague 0.000047566
Disease:Dysentery 0.000047566
Disease:Gastroenteritis 8.462e-61013
Endospores:No 0.000770727211
GC_Content_Range4:0-40 2.228e-1014213
GC_Content_Range4:40-60 1.487e-1378224
GC_Content_Range7:30-40 9.513e-117166
GC_Content_Range7:40-50 0.000790135117
GC_Content_Range7:50-60 1.310e-843107
Genome_Size_Range5:0-2 9.761e-152155
Genome_Size_Range5:2-4 1.752e-618197
Genome_Size_Range5:4-6 5.780e-2482184
Genome_Size_Range9:1-2 1.641e-112128
Genome_Size_Range9:2-3 0.000416811120
Genome_Size_Range9:3-4 0.0049208777
Genome_Size_Range9:4-5 8.261e-104296
Genome_Size_Range9:5-6 5.882e-104088
Gram_Stain:Gram_Neg 1.089e-1499333
Gram_Stain:Gram_Pos 2.612e-88150
Habitat:Multiple 0.000480149178
Habitat:Terrestrial 0.0081961131
Motility:No 6.514e-115151
Motility:Yes 5.997e-1284267
Optimal_temp.:35-37 0.0044388713
Oxygen_Req:Anaerobic 0.002242610102
Oxygen_Req:Facultative 1.967e-1373201
Pathogenic_in:Human 0.000290257213
Pathogenic_in:No 0.000041526226
Shape:Rod 1.658e-15102347
Temp._range:Mesophilic 0.0082375100473
Temp._range:Psychrophilic 0.002155769



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 234
Effective number of orgs (counting one per cluster within 468 clusters): 196

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
STOK273063 ncbi Sulfolobus tokodaii 70
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP644076 Silicibacter sp. TrichCH4B1
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F11
SLAC55218 Ruegeria lacuscaerulensis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT31
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
NFAR247156 ncbi Nocardia farcinica IFM 101521
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAR394221 ncbi Maricaulis maris MCS101
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1041
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HNEP81032 Hyphomonas neptunium1
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GURA351605 ncbi Geobacter uraniireducens Rf41
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H1
GMET269799 ncbi Geobacter metallireducens GS-151
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FMAG334413 ncbi Finegoldia magna ATCC 293281
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE451
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH1
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi1
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B311
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
AMAR234826 ncbi Anaplasma marginale St. Maries1
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ACRY349163 ncbi Acidiphilium cryptum JF-51
ABUT367737 ncbi Arcobacter butzleri RM40181
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG11485   EG11484   EG11021   EG10698   EG10278   
ZMOB264203
XFAS405440 XFASM12_0966
XFAS183190 PD_0803
XFAS160492 XF2009
WSUC273121 WS1215
WPIP955
WPIP80849
UURE95667 UU262
UURE95664 UUR10_0258
UPAR505682 UPA3_0270
TWHI218496 TW0223
TWHI203267 TW522
TVOL273116 TVN0558
TPEN368408
TPAL243276
TERY203124 TERY_3411
TDEN326298 TMDEN_1524
STOK273063
SSP84588 SYNW0506OR1470
SSP64471 GSYN2427
SSP644076 SCH4B_1806
SSP321332
SSP321327
SSP292414 TM1040_1935
SSP1148 SLL0136
SSP1131 SYNCC9605_2176
SSOL273057
SMAR399550 SMAR_1098
SLAC55218 SL1157_2367
SFUM335543
SALA317655
SACI56780 SYN_02617
SACI330779
RTYP257363
RSPH349102 RSPH17025_0640
RSPH349101 RSPH17029_0503
RSPH272943 RSP_1854
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_1353
RPAL316058 RPB_0525
RPAL316057 RPD_0320
RPAL316056
RPAL316055 RPE_0248
RPAL258594
RMAS416276
RLEG216596
RFEL315456
RETL347834
RDEN375451 RD1_1942
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_2682
RAKA293614
PTOR263820 PTO0981
PTHE370438 PTH_1161
PSP312153 PNUC_1873
PPEN278197 PEPE_0424
PMAR74547 PMT1456
PMAR74546 PMT9312_1535
PMAR59920 PMN2A_0973
PMAR167555 NATL1_18411
PMAR167546 P9301ORF_1664
PMAR167540 PMM1442
PMAR167539 PRO_1595
PMAR146891 A9601_16441
PLUT319225
PISL384616
PHOR70601 PH1813
PCAR338963 PCAR_2481
PAST100379 PAM245
PARS340102
PAER178306
OTSU357244
OCAR504832
NWIN323098
NSP387092 NIS_1741
NSEN222891
NHAM323097
NGON242231 NGO0230
NFAR247156 NFA21570
NARO279238 SARO_0152
MVAN350058 MVAN_4589
MTUB419947 MRA_1084
MTUB336982 TBFG_11092
MTHE349307 MTHE_0518
MTHE187420 MTH1264
MTBRV RV1074C
MTBCDC MT1104
MSYN262723 MS53_0490
MSTA339860 MSP_0830
MSP409
MSP266779 MESO_1567
MSP189918 MKMS_4156
MSP164757 MJLS_4310
MSP164756 MMCS_4080
MSED399549 MSED_1610
MPUL272635 MYPU_2760
MPNE272634
MPEN272633
MMYC272632 MSC_0090
MMOB267748 MMOB5500
MMAR394221 MMAR10_0490
MMAG342108 AMB4108
MLOT266835 MLR4722
MLEP272631
MLAB410358 MLAB_0172
MKAN190192 MK1010
MJAN243232 MJ_1485
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_2116
MGEN243273
MFLO265311 MFL056
MEXT419610
MCAP340047
MBOV410289 BCG_1132C
MBOV233413 MB1103C
MAVI243243 MAV_4185
MAER449447 MAE_13250
MAEO419665 MAEO_1375
MABS561007 MAB_3455C
LWEL386043 LWE2464
LSAK314315 LSA0491
LPLA220668 LP_0734
LMON265669 LMOF2365_2489
LMON169963 LMO2516
LJOH257314 LJ_0842
LINT267671 LIC_11313
LINT189518 LA2687
LINN272626 LIN2660
LGAS324831 LGAS_1335
LCAS321967 LSEI_0925
LBRE387344 LVIS_0623
LBOR355277 LBJ_1022
LBOR355276 LBL_2012
LBIF456481 LEPBI_I1788
LBIF355278 LBF_1735
IHOS453591 IGNI_0192
HPYL85963 JHP1378
HPYL357544 HPAG1_1428
HPY HP1485
HNEP81032 HNE_2733
HMOD498761 HM1_0072
HHEP235279
HHAL349124 HHAL_1185
HBUT415426 HBUT_0514
HACI382638 HAC_1745
GVIO251221 GLR0093
GURA351605 GURA_1592
GSUL243231
GOXY290633 GOX0941
GMET269799 GMET_2953
GBET391165
FSUC59374
FMAG334413 FMG_0895
ERUM302409 ERGA_CDS_08830
ERUM254945 ERWE_CDS_08920
ELIT314225
ECHA205920 ECH_1093
ECAN269484 ECAJ_0877
DVUL882 DVU_2315
DSP255470 CBDBA35
DSP216389 DEHABAV1_0028
DSHI398580 DSHI_2406
DETH243164 DET_0029
CTRA471473 CTLON_0831
CTRA471472 CTL0837
CTEP194439
CSUL444179
CSP78 CAUL_5088
CSP501479 CSE45_2696
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_0211
CMUR243161
CMIC31964 CMS1903
CMET456442 MBOO_2084
CMAQ397948
CKOR374847
CJEJ407148 C8J_0404
CJEJ360109 JJD26997_0720
CJEJ354242 CJJ81176_0449
CJEJ195099
CJEJ192222 CJ0429C
CJEI306537 JK0774
CHOM360107 CHAB381_0524
CGLU196627 CG2332
CFET360106 CFF8240_0077
CFEL264202
CDIP257309 DIP1578
CCUR360105 CCV52592_2202
CCON360104 CCC13826_0428
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CACE272562 CAC2296
CABO218497
BTRI382640 BT_0747
BSP376
BSP107806
BQUI283165 BQ09290
BJAP224911 BLR0925
BHER314723 BH0430
BHEN283166 BH11670
BGAR290434 BG0438
BCIC186490
BBUR224326 BB_0430
BBAC360095 BARBAKC583_0982
BAPH372461
BAPH198804
BAFZ390236 BAPKO_0452
AYEL322098
AVAR240292 AVA_4366
AURANTIMONAS
APHA212042 APH_1182
AMAR234826 AM1116
AFER243159 AFE_0293
ACRY349163 ACRY_0005
ABUT367737 ABU_1834
AAEO224324 AQ_1535


Organism features enriched in list (features available for 217 out of the 234 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00004151892
Arrangment:Pairs 8.555e-1410112
Disease:Pharyngitis 0.000339388
Disease:bronchitis_and_pneumonitis 0.000339388
Endospores:Yes 2.678e-7453
GC_Content_Range4:0-40 0.002355294213
GC_Content_Range4:40-60 0.009440872224
GC_Content_Range7:0-30 0.00002203147
Genome_Size_Range5:0-2 5.459e-19104155
Genome_Size_Range5:4-6 4.626e-1036184
Genome_Size_Range5:6-10 0.0030111947
Genome_Size_Range9:0-1 1.766e-82427
Genome_Size_Range9:1-2 2.936e-1180128
Genome_Size_Range9:4-5 0.00214582496
Genome_Size_Range9:5-6 1.061e-71288
Gram_Stain:Gram_Pos 0.000031936150
Habitat:Host-associated 0.002711491206
Habitat:Terrestrial 0.0017200431
Motility:Yes 0.000780482267
Oxygen_Req:Facultative 2.293e-845201
Oxygen_Req:Microaerophilic 0.00038911418
Shape:Coccus 0.00028981782
Shape:Oval 0.006938655
Shape:Rod 0.0021409114347
Shape:Sphere 0.00017711519
Shape:Spiral 3.548e-92934



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120780.5703
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181030.5253
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.5178
GALACTITOLCAT-PWY (galactitol degradation)73520.4832
PWY-5148 (acyl-CoA hydrolysis)227970.4551
SORBDEG-PWY (sorbitol degradation II)53410.4519
GLYCOCAT-PWY (glycogen degradation I)2461010.4512
ECASYN-PWY (enterobacterial common antigen biosynthesis)191870.4474
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176820.4388
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195870.4381
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4323
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121630.4117
PWY-46 (putrescine biosynthesis III)138680.4095
LYXMET-PWY (L-lyxose degradation)87510.4050
GLUTAMINDEG-PWY (glutamine degradation I)191820.4031



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11484   EG11021   EG10698   EG10278   
EG114850.9991850.9993120.9988050.998946
EG114840.9990590.9985820.998748
EG110210.9986160.998721
EG106980.998549
EG10278



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PAIRWISE BLAST SCORES:

  EG11485   EG11484   EG11021   EG10698   EG10278   
EG114850.0f0----
EG11484-0.0f0---
EG11021--0.0f0--
EG10698---0.0f0-
EG10278----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10278 EG10698 EG11021 EG11484 EG11485 (centered at EG11484)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11485   EG11484   EG11021   EG10698   EG10278   
92/623376/623274/623320/623274/623
AAEO224324:0:Tyes---0-
AAUR290340:2:Tyes-0-683-
AAVE397945:0:Tyes-0207121101617
ABAC204669:0:Tyes---8230
ABAU360910:0:Tyes-175202544-
ABOR393595:0:Tyes-1526025151560
ABUT367737:0:Tyes-0---
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