CANDIDATE ID: 682

CANDIDATE ID: 682

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9918620e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7693 (yhdT) (b3257)
   Products of gene:
     - G7693-MONOMER (conserved inner membrane protein)

- EG11497 (prmA) (b3259)
   Products of gene:
     - EG11497-MONOMER (methyltransferase for 50S ribosomal subunit protein L11)
       Reactions:
        a non-methylated ribosomal protein L11 + S-adenosyl-L-methionine  ->  a methylated ribosomal protein L11 + S-adenosyl-L-homocysteine

- EG11311 (dusB) (b3260)
   Products of gene:
     - EG11311-MONOMER (tRNA dihydrouridine synthase)
       Reactions:
        a tRNA  ->  tRNA containing 5,6-dihydrouridine

- EG10276 (accC) (b3256)
   Products of gene:
     - BIOTIN-CARBOXYL-MONOMER (AccC)
     - BIOTIN-CARBOXYL-CPLX (biotin carboxylase)
       Reactions:
        a biotinylated BCCP (dimer) + bicarbonate + ATP  =  a carboxylated-biotinylated-BCCP + phosphate + ADP
         In pathways
         PWY0-1264 (biotin-carboxyl carrier protein assembly)
     - ACETYL-COA-CARBOXYLMULTI-CPLX (acetyl-CoA carboxylase)
       Reactions:
        ATP + acetyl-CoA + bicarbonate  ->  malonyl-CoA + phosphate + ADP + 2 H+
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5156 (PWY-5156)
         PWY-6113 (PWY-6113)
         PWY-6285 (PWY-6285)
         PWY-5744 (PWY-5744)
         PWY-5743 (PWY-5743)
         PWY-5789 (PWY-5789)
         PWY-4381 (fatty acid biosynthesis initiation I)

- EG10275 (accB) (b3255)
   Products of gene:
     - BCCP-BIOTIN-CO2 (carboxybiotin-carboxyl-carrier protein)
     - BCCP-MONOMER (biotin carboxyl carrier protein)
     - BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
     - BCCP-CPLX (biotin carboxyl carrier protein (dimer))
       Regulatees:
        TU00231 (accBC)
     - ACETYL-COA-CARBOXYLMULTI-CPLX (acetyl-CoA carboxylase)
       Reactions:
        ATP + acetyl-CoA + bicarbonate  ->  malonyl-CoA + phosphate + ADP + 2 H+
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5156 (PWY-5156)
         PWY-6113 (PWY-6113)
         PWY-6285 (PWY-6285)
         PWY-5744 (PWY-5744)
         PWY-5743 (PWY-5743)
         PWY-5789 (PWY-5789)
         PWY-4381 (fatty acid biosynthesis initiation I)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 274
Effective number of orgs (counting one per cluster within 468 clusters): 187

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TERY203124 ncbi Trichodesmium erythraeum IMS1014
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE322159 ncbi Streptococcus thermophilus LMD-94
STHE299768 ncbi Streptococcus thermophilus CNRZ10664
STHE264199 ncbi Streptococcus thermophilus LMG 183114
SSUI391296 ncbi Streptococcus suis 98HAH334
SSP64471 ncbi Synechococcus sp. CC93114
SSP644076 Silicibacter sp. TrichCH4B4
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSP292414 ncbi Ruegeria sp. TM10404
SSP1148 ncbi Synechocystis sp. PCC 68034
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705854
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-64
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-144
SPNE171101 ncbi Streptococcus pneumoniae R64
SPNE1313 Streptococcus pneumoniae4
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SGOR29390 Streptococcus gordonii Challis4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SELO269084 ncbi Synechococcus elongatus PCC 63014
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2275
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RALB246199 Ruminococcus albus 84
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp4
PMAR167540 Prochlorococcus marinus pastoris MED4ax4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NSP103690 ncbi Nostoc sp. PCC 71204
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MXAN246197 ncbi Myxococcus xanthus DK 16224
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS104
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LINN272626 ncbi Listeria innocua Clip112624
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-14
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E884
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT4
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  G7693   EG11497   EG11311   EG10276   EG10275   
ZMOB264203 ZMO0570ZMO1127ZMO0735ZMO0736
YPSE349747 YPSIP31758_0390YPSIP31758_0388YPSIP31758_0386YPSIP31758_0391YPSIP31758_0392
YPSE273123 YPTB3573YPTB3575YPTB3576YPTB3572YPTB3571
YPES386656 YPDSF_0264YPDSF_0262YPDSF_0261YPDSF_0265YPDSF_0266
YPES377628 YPN_3514YPN_3516YPN_3517YPN_3513YPN_3512
YPES360102 YPA_3670YPA_3668YPA_3667YPA_3671YPA_3672
YPES349746 YPANGOLA_A1208YPANGOLA_A1210YPANGOLA_A1211YPANGOLA_A1205YPANGOLA_A1204
YPES214092 YPO3657AYPO3656YPO3655YPO3658YPO3659
YPES187410 Y0210Y0212Y0213Y0209Y0208
YENT393305 YE3813YE3815YE3816YE3812YE3811
XORY360094 XOOORF_4794XOOORF_1119XOOORF_4790XOOORF_4788
XORY342109 XOO0516XOO3567XOO0520XOO0522
XORY291331 XOO0552XOO3787XOO0556XOO0558
XCAM487884 XCC-B100_0542XCC-B100_3590XCC-B100_0545XCC-B100_0547
XCAM316273 XCAORF_3994XCAORF_0941XCAORF_3988XCAORF_3986
XCAM314565 XC_0524XC_3469XC_0527XC_0529
XCAM190485 XCC0512XCC0763XCC0515XCC0517
XAXO190486 XAC0526XAC0816XAC0530XAC0532
VVUL216895 VV1_1233VV1_1232VV1_1234VV1_1235
VVUL196600 VV3137VV3138VV3136VV3135
VPAR223926 VP2883VP2884VP2881VP2880
VFIS312309 VF2388VF2390VF2387VF2386
VEIS391735 VEIS_1491VEIS_3027VEIS_1490VEIS_1489
VCHO345073 VC0395_A2687VC0395_A2686VC0395_A2688VC0395_A2689
VCHO VC0293VC0291VC0295VC0296
TTUR377629 TERTU_3081TERTU_3084TERTU_3080TERTU_3079
TERY203124 TERY_4195TERY_1325TERY_3707TERY_1314
TELO197221 TLR0326TLL0991TLR1808TLR1295
TDEN292415 TBD_0180TBD_2456TBD_0181TBD_0182
TCRU317025 TCR_0442TCR_0441TCR_0443TCR_0444
SWOL335541 SWOL_1576SWOL_0110SWOL_0559SWOL_0558
STYP99287 STM3381STM3383STM3384STM3380STM3379
STHE322159 STER_0196STER_0231STER_0437STER_0435
STHE299768 STR0137STR0181STR0391STR0389
STHE264199 STU0137STU0181STU0391STU0389
SSUI391296 SSU98_2114SSU98_1975SSU98_1803SSU98_1805
SSP64471 GSYN2391GSYN0623GSYN2606GSYN0034
SSP644076 SCH4B_2541SCH4B_2280SCH4B_2119SCH4B_2120
SSP321332 CYB_0696CYB_1632CYB_1391CYB_0436
SSP321327 CYA_2493CYA_1650CYA_0852CYA_1271
SSP292414 TM1040_2376TM1040_1363TM1040_1518TM1040_1517
SSP1148 SLL1909SLR0644SLL0053SLR0435
SSON300269 SSO_3398SSO_3400SSO_3401SSO_3397SSO_3396
SSED425104 SSED_4117SSED_4118SSED_4090SSED_4089
SPRO399741 SPRO_4419SPRO_4421SPRO_4423SPRO_4418SPRO_4417
SPNE488221 SP70585_1828SP70585_2315SP70585_0496SP70585_0494
SPNE487214 SPH_1899SPH_2384SPH_0534SPH_0532
SPNE487213 SPT_1705SPT_2204SPT_0462SPT_0460
SPNE171101 SPR1608SPR1994SPR0385SPR0383
SPNE1313 SPJ_1681SPJ_2216SPJ_0411SPJ_0409
SMEL266834 SMC01472SMC01041SMC01345SMC01344
SMED366394 SMED_2054SMED_1088SMED_0952SMED_0953
SLOI323850 SHEW_0331SHEW_0330SHEW_3365SHEW_3364
SLAC55218 SL1157_0215SL1157_2682SL1157_2123SL1157_2124
SHIGELLA YHDTPRMAYHDGACCCACCB
SGOR29390 SGO_1824SGO_1993SGO_1689SGO_1691
SFLE373384 SFV_3282SFV_3284SFV_3285SFV_3281SFV_3280
SFLE198214 AAN44759.1AAN44761.1AAN44762.1AAN44758.1AAN44757.1
SENT454169 SEHA_C3679SEHA_C3681SEHA_C3682SEHA_C3678SEHA_C3677
SENT321314 SCH_3319SCH_3321SCH_3322SCH_3318SCH_3317
SENT295319 SPA3248SPA3250SPA3251SPA3247SPA3246
SENT220341 STY3561STY3563STY3564STY3560STY3559
SENT209261 T3296T3298T3299T3295T3294
SELO269084 SYC2485_CSYC1229_DSYC0177_CSYC1546_D
SDYS300267 SDY_3434SDY_3436SDY_3437SDY_3433SDY_3432
SDEG203122 SDE_0810SDE_0808SDE_0811SDE_0812
SBOY300268 SBO_3251SBO_3253SBO_3254SBO_3132SBO_3133
RSPH349102 RSPH17025_1227RSPH17025_1486RSPH17025_1454RSPH17025_1455
RSPH349101 RSPH17029_2210RSPH17029_1458RSPH17029_1824RSPH17029_1823
RSPH272943 RSP_0558RSP_2836RSP_0191RSP_0190
RSOL267608 RSC2788RSC0506RSP0940RSC2786
RPOM246200 SPO_3120SPO_2089SPO_1010SPO_1011
RPAL316058 RPB_2012RPB_2884RPB_3020RPB_3019
RPAL316057 RPD_3377RPD_2588RPD_2431RPD_2432
RPAL316056 RPC_3290RPC_2576RPC_2869RPC_2868
RPAL316055 RPE_2125RPE_2756RPE_2988RPE_2987
RPAL258594 RPA3514RPA2591RPA2435RPA2436
RMET266264 RMET_3066RMET_0429RMET_3065RMET_3064
RFER338969 RFER_3351RFER_1580RFER_3352RFER_3353
REUT381666 H16_A3173H16_A0503H16_A3172H16_A3171
REUT264198 REUT_A2867REUT_A0489REUT_A2866REUT_A2865
RDEN375451 RD1_2084RD1_2765RD1_2851RD1_2850
RALB246199 GRAORF_3831GRAORF_1921GRAORF_1091GRAORF_1084
PTHE370438 PTH_0880PTH_0259PTH_1175PTH_1174
PSYR223283 PSPTO_4862PSPTO_4864PSPTO_2921PSPTO_4860
PSYR205918 PSYR_4402PSYR_4404PSYR_4401PSYR_4400
PSTU379731 PST_3275PST_3277PST_3274PST_3273
PSP56811 PSYCPRWF_1622PSYCPRWF_0953PSYCPRWF_2223PSYCPRWF_1657
PSP312153 PNUC_0208PNUC_1875PNUC_0209PNUC_0210
PSP296591 BPRO_1101BPRO_1130BPRO_1100BPRO_1099
PPUT76869 PPUTGB1_4871PPUTGB1_4873PPUTGB1_0603PPUTGB1_0604
PPUT351746 PPUT_4693PPUT_4695PPUT_0597PPUT_0598
PPUT160488 PP_4818PP_4820PP_0558PP_0559
PPRO298386 PBPRA3407PBPRA3409PBPRA3410PBPRA3406PBPRA3405
PNAP365044 PNAP_3390PNAP_3360PNAP_3391PNAP_3392
PMUL272843 PM1090PM1088PM1087PM1091PM1092
PMEN399739 PMEN_0712PMEN_0710PMEN_0713PMEN_0714
PMAR167540 PMM1353PMM1009PMM0060PMM0027
PLUM243265 PLU4085PLU4087PLU4088PLU4075PLU4074
PHAL326442 PSHAA0348PSHAA0347PSHAA0266PSHAA0265
PFLU220664 PFL_0670PFL_0668PFL_0671PFL_0672
PFLU216595 PFLU0616PFLU0614PFLU4024PFLU0618
PFLU205922 PFL_0617PFL_0615PFL_0618PFL_0619
PENT384676 PSEEN4859PSEEN4861PSEEN4857PSEEN4856
PCRY335284 PCRYO_1648PCRYO_1078PCRYO_1164PCRYO_1165
PCAR338963 PCAR_3080PCAR_1992PCAR_2127PCAR_2128
PATL342610 PATL_0092PATL_0270PATL_0090PATL_0089
PARC259536 PSYC_1470PSYC_1300PSYC_1227PSYC_1226
PAER208964 PA4850PA4852PA4848PA4847
PAER208963 PA14_64140PA14_64180PA14_64110PA14_64100
OCAR504832 OCAR_5257OCAR_6094OCAR_5979OCAR_5980
OANT439375 OANT_1759OANT_2070OANT_2274OANT_2273
NSP103690 ALR1891ALL1227ALR0939ALL5057
NMUL323848 NMUL_A2751NMUL_A0131NMUL_A2752NMUL_A2753
NMEN374833 NMCC_0359NMCC_1327NMCC_0360NMCC_0361
NMEN272831 NMC0356NMC1354NMC0357NMC0358
NMEN122587 NMA0595NMA1633NMA0596NMA0597
NMEN122586 NMB_1862NMB_1421NMB_1861NMB_1860
NGON242231 NGO0043NGO0151NGO0044NGO0045
NEUT335283 NEUT_1898NEUT_1208NEUT_1899NEUT_1900
NEUR228410 NE0654NE0874NE0653NE0652
MXAN246197 MXAN_1139MXAN_6304MXAN_5767MXAN_5768
MTHE264732 MOTH_0573MOTH_0147MOTH_1524MOTH_1525
MSUC221988 MS1787MS0533MS0532MS1788MS1789
MSP400668 MMWYL1_2983MMWYL1_2985MMWYL1_2982MMWYL1_2981
MPET420662 MPE_A3208MPE_A0486MPE_A3207MPE_A3206
MMAR394221 MMAR10_2060MMAR10_1440MMAR10_1265MMAR10_1266
MMAG342108 AMB0726AMB2365AMB2708AMB2707
MLOT266835 MLR1533MLR0396MLL0203MLL0206
MFLA265072 MFLA_0023MFLA_0351MFLA_0024MFLA_0025
MCAP243233 MCA_1047MCA_1745MCA_1046MCA_1045
MAQU351348 MAQU_3446MAQU_3448MAQU_3445MAQU_3444
LWEL386043 LWE1486LWE0191LWE1372LWE1371
LMON265669 LMOF2365_1490LMOF2365_0239LMOF2365_1374LMOF2365_1373
LMON169963 LMO1471LMO0227LMO1357LMO1356
LLAC272623 L104221L19272L0189L0187
LINN272626 LIN1508LIN0259LIN1394LIN1393
LCHO395495 LCHO_3987LCHO_0534LCHO_3986LCHO_3985
KPNE272620 GKPORF_B3005GKPORF_B3007GKPORF_B3008GKPORF_B3004GKPORF_B3003
JSP375286 MMA_2973MMA_0306MMA_2972MMA_2971
JSP290400 JANN_0961JANN_2236JANN_2715JANN_2714
ILOI283942 IL2287IL2288IL2286IL2285
HSOM228400 HSM_1608HSM_1609HSM_1606HSM_1605
HSOM205914 HS_0566HS_0565HS_0568HS_0569
HMOD498761 HM1_2439HM1_0661HM1_0283HM1_0282
HINF71421 HI_0974.1HI_0978HI_0979HI_0972HI_0971
HINF374930 CGSHIEE_07095CGSHIEE_07075CGSHIEE_07070CGSHIEE_07100CGSHIEE_07105
HINF281310 NTHI1146NTHI1149NTHI1151NTHI1145NTHI1144
HDUC233412 HD_0673HD_0016HD_0448HD_0635HD_0634
HCHE349521 HCH_06007HCH_06009HCH_06006HCH_06005
HAUR316274 HAUR_3109HAUR_1464HAUR_0749HAUR_4727
HARS204773 HEAR2764HEAR0253HEAR2763HEAR2762
GVIO251221 GLR2136GLL1047GLL2012GLR1286
GURA351605 GURA_4290GURA_0914GURA_1826GURA_1825
GTHE420246 GTNG_2438GTNG_0073GTNG_2330GTNG_2331
GSUL243231 GSU_0447GSU_1005GSU_2019GSU_2020
GOXY290633 GOX2389GOX0469GOX0435GOX0436
GMET269799 GMET_3386GMET_2561GMET_0984GMET_0983
GKAU235909 GK2502GK0073GK2399GK2400
FTUL458234 FTA_1027FTA_1028FTA_1677FTA_1678
FTUL418136 FTW_1026FTW_1025FTW_1597FTW_1598
FTUL401614 FTN_0988FTN_0987FTN_0564FTN_0563
FTUL393115 FTF0518FTF0519FTF0473FTF0472
FTUL393011 FTH_0953FTH_0954FTH_1537FTH_1538
FTUL351581 FTL_0974FTL_0975FTL_1591FTL_1592
FRANT PRMAFT.0520ACCCACCB
FPHI484022 FPHI_1897FPHI_1896FPHI_0273FPHI_0274
ESP42895 ENT638_3695ENT638_3697ENT638_3699ENT638_3694ENT638_3693
EFER585054 EFER_3236EFER_3238EFER_3239EFER_3235EFER_3234
ECOO157 YHDTPRMAYHDGACCCACCB
ECOL83334 ECS4129ECS4131ECS4132ECS4128ECS4127
ECOL585397 ECED1_3916ECED1_3918ECED1_3919ECED1_3907ECED1_3906
ECOL585057 ECIAI39_3757ECIAI39_3759ECIAI39_3760ECIAI39_3748ECIAI39_3747
ECOL585056 ECUMN_3731ECUMN_3733ECUMN_3734ECUMN_3730ECUMN_3729
ECOL585055 EC55989_3671EC55989_3673EC55989_3674EC55989_3670EC55989_3669
ECOL585035 ECS88_3642ECS88_3644ECS88_3645ECS88_3632ECS88_3631
ECOL585034 ECIAI1_3400ECIAI1_3402ECIAI1_3403ECIAI1_3399ECIAI1_3398
ECOL481805 ECOLC_0449ECOLC_0447ECOLC_0446ECOLC_0450ECOLC_0451
ECOL469008 ECBD_0488ECBD_0486ECBD_0485ECBD_0489ECBD_0490
ECOL439855 ECSMS35_3552ECSMS35_3554ECSMS35_3555ECSMS35_3551ECSMS35_3550
ECOL413997 ECB_03115ECB_03117ECB_03118ECB_03114ECB_03113
ECOL409438 ECSE_3538ECSE_3540ECSE_3541ECSE_3537ECSE_3536
ECOL405955 APECO1_3181APECO1_3179APECO1_3178APECO1_3190APECO1_3191
ECOL364106 UTI89_C3699UTI89_C3701UTI89_C3702UTI89_C3689UTI89_C3688
ECOL362663 ECP_3350ECP_3352ECP_3353ECP_3341ECP_3340
ECOL331111 ECE24377A_3741ECE24377A_3743ECE24377A_3745ECE24377A_3740ECE24377A_3739
ECOL316407 ECK3244:JW3225:B3257ECK3246:JW3227:B3259ECK3247:JW3228:B3260ECK3243:JW3224:B3256ECK3242:JW3223:B3255
ECOL199310 C4022C4024C4026C4012C4011
ECAR218491 ECA0258ECA0256ECA0260ECA0261
DSHI398580 DSHI_1100DSHI_1576DSHI_1395DSHI_1396
DRED349161 DRED_2494DRED_0172DRED_1065DRED_1064
DNOD246195 DNO_0422DNO_0423DNO_0421DNO_0420
DHAF138119 DSY3128DSY0217DSY2366DSY2367
DARO159087 DARO_3937DARO_3665DARO_3938DARO_3939
CVIO243365 CV_0984CV_0544CV_0985CV_0986
CTET212717 CTC_02029CTC_00208CTC_00134CTC_00132
CSP501479 CSE45_0163CSE45_1379CSE45_0360CSE45_0361
CSAL290398 CSAL_2286CSAL_2287CSAL_2285CSAL_2284
CPSY167879 CPS_0540CPS_0550CPS_0946CPS_0947
CPER289380 CPR_1999CPR_2469CPR_1142CPR_1140
CPER195103 CPF_2284CPF_2783CPF_1330CPF_1328
CPER195102 CPE2027CPE2467CPE1074CPE1072
CNOV386415 NT01CX_0055NT01CX_1044NT01CX_0929NT01CX_0927
CKLU431943 CKL_0904CKL_0175CKL_0110CKL_0108
CJAP155077 CJA_2742CJA_2745CJA_2741CJA_2740
CHYD246194 CHY_0417CHY_2369CHY_1998CHY_1999
CDES477974 DAUD_2055DAUD_0127DAUD_1016DAUD_1015
CBOT536232 CLM_3352CLM_4007CLM_4088CLM_4090
CBOT515621 CLJ_B3214CLJ_B3845CLJ_B3925CLJ_B3927
CBOT498213 CLD_1588CLD_0969CLD_0890CLD_0888
CBOT441772 CLI_3010CLI_3730CLI_3821CLI_3823
CBOT441771 CLC_2853CLC_3485CLC_3574CLC_3576
CBOT441770 CLB_2921CLB_3596CLB_3676CLB_3678
CBOT36826 CBO2957CBO3521CBO3596CBO3598
CBEI290402 CBEI_0834CBEI_0103CBEI_2754CBEI_1073
CACE272562 CAC1284CAC3199CAC3570CAC3572
BWEI315730 BCERKBAB4_4163BCERKBAB4_0071BCERKBAB4_4036BCERKBAB4_4037
BVIE269482 BCEP1808_0578BCEP1808_0658BCEP1808_0579BCEP1808_0580
BTHU412694 BALH_3902BALH_0074BALH_3792BALH_3793
BTHU281309 BT9727_4049BT9727_0071BT9727_3926BT9727_3927
BTHA271848 BTH_I1161BTH_I1252BTH_I1162BTH_I1163
BSUI470137 BSUIS_A1468BSUIS_A1168BSUIS_A0945BSUIS_A0946
BSUI204722 BR_1417BR_1119BR_0906BR_0907
BSUB BSU25450BSU00810BSU24340BSU24350
BSP36773 BCEP18194_A3686BCEP18194_A3779BCEP18194_A3687BCEP18194_A3688
BPUM315750 BPUM_2278BPUM_0065BPUM_2166BPUM_2167
BPSE320373 BURPS668_3467BURPS668_3360BURPS668_3466BURPS668_3465
BPSE320372 BURPS1710B_A3781BURPS1710B_A3677BURPS1710B_A3780BURPS1710B_A3779
BPSE272560 BPSL2985BPSL2894BPSL2984BPSL2983
BPET94624 BPET0576BPET0908BPET0575BPET0574
BPER257313 BP2995BP3414BP2996BP2997
BPAR257311 BPP3915BPP3564BPP3916BPP3917
BMEL359391 BAB1_1436BAB1_1142BAB1_0924BAB1_0925
BMEL224914 BMEI0592BMEI0864BMEI1063BMEI1062
BMAL320389 BMA10247_3281BMA10247_2538BMA10247_3282BMA10247_3283
BMAL320388 BMASAVP1_A0424BMASAVP1_A0272BMASAVP1_A0423BMASAVP1_A0422
BMAL243160 BMA_2503BMA_2358BMA_2502BMA_2501
BLIC279010 BL02099BL03311BL01530BL01531
BHAL272558 BH1349BH0097BH2787BH2788
BCLA66692 ABC1661ABC0116ABC2468ABC2469
BCER572264 BCA_4423BCA_0088BCA_4293BCA_4294
BCER405917 BCE_4393BCE_0074BCE_4257BCE_4258
BCER315749 BCER98_3038BCER98_0071BCER98_2877BCER98_2878
BCER288681 BCE33L4059BCE33L0071BCE33L3937BCE33L3938
BCER226900 BC_4310BC_0083BC_4183BC_4184
BCEN331272 BCEN2424_0603BCEN2424_0693BCEN2424_0604BCEN2424_0605
BCEN331271 BCEN_0120BCEN_0209BCEN_0121BCEN_0122
BCAN483179 BCAN_A1450BCAN_A1138BCAN_A0919BCAN_A0920
BBRO257310 BB4388BB3999BB4735BB4390
BANT592021 BAA_4556BAA_0088BAA_4425BAA_4426
BANT568206 BAMEG_4574BAMEG_0088BAMEG_4443BAMEG_4444
BANT261594 GBAA4537GBAA0075GBAA4408GBAA4409
BANT260799 BAS4211BAS0075BAS4088BAS4089
BAMY326423 RBAM_023750RBAM_000910RBAM_022670RBAM_022680
BAMB398577 BAMMC406_0529BAMMC406_0612BAMMC406_0530BAMMC406_0531
BAMB339670 BAMB_0505BAMB_0586BAMB_0506BAMB_0507
BABO262698 BRUAB1_1412BRUAB1_1125BRUAB1_0917BRUAB1_0918
AVAR240292 AVA_3760AVA_0645AVA_0516AVA_2314
ASP76114 EBA1475EBA1152EBA1474EBA1472
ASP62977 ACIAD2443ACIAD2557ACIAD1736ACIAD1737
ASP62928 AZO0861AZO2892AZO0862AZO0864
ASP232721 AJS_3637AJS_3586AJS_3638AJS_3639
ASAL382245 ASA_0958ASA_0808ASA_0964ASA_0965
APLE434271 APJL_1564APJL_0190APJL_1908APJL_1907
APLE416269 APL_1537APL_0189APL_1865APL_1864
AORE350688 CLOS_1235CLOS_0447CLOS_0395CLOS_0394
AMAR329726 AM1_1275AM1_1374AM1_2122AM1_3932
AHYD196024 AHA_3353AHA_3510AHA_3347AHA_3346
AEHR187272 MLG_0608MLG_1399MLG_0026MLG_0025
ADEH290397 ADEH_0246ADEH_3790ADEH_0650ADEH_0649
ACAU438753 AZC_4478AZC_3088AZC_3075AZC_3074
ABOR393595 ABO_2011ABO_2013ABO_2010ABO_2009
ABAU360910 BAV2995BAV2774BAV2996BAV2997
AAVE397945 AAVE_0859AAVE_0894AAVE_0858AAVE_0857


Organism features enriched in list (features available for 256 out of the 274 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00148235392
Arrangment:Pairs 0.000323965112
Disease:Bubonic_plague 0.006934466
Disease:Dysentery 0.006934466
Endospores:No 4.236e-1844211
Endospores:Yes 3.439e-63953
GC_Content_Range4:0-40 2.247e-1254213
GC_Content_Range4:40-60 4.414e-6124224
GC_Content_Range4:60-100 0.001721378145
GC_Content_Range7:0-30 0.00342011247
GC_Content_Range7:30-40 3.522e-942166
GC_Content_Range7:50-60 1.327e-873107
GC_Content_Range7:60-70 0.000127077134
Genome_Size_Range5:0-2 1.954e-2516155
Genome_Size_Range5:2-4 0.008981575197
Genome_Size_Range5:4-6 3.305e-21133184
Genome_Size_Range5:6-10 0.00030153247
Genome_Size_Range9:1-2 1.184e-1716128
Genome_Size_Range9:2-3 0.004412441120
Genome_Size_Range9:4-5 1.027e-96996
Genome_Size_Range9:5-6 2.270e-96488
Genome_Size_Range9:6-8 0.00002282938
Gram_Stain:Gram_Neg 2.232e-10183333
Gram_Stain:Gram_Pos 0.000404449150
Habitat:Host-associated 2.500e-762206
Habitat:Multiple 4.505e-9110178
Habitat:Specialized 0.00627381553
Habitat:Terrestrial 0.00359572131
Motility:No 2.268e-936151
Motility:Yes 1.348e-11157267
Optimal_temp.:- 0.0083714125257
Optimal_temp.:25-30 0.00145091519
Optimal_temp.:35-37 0.00001891313
Oxygen_Req:Anaerobic 0.000833131102
Oxygen_Req:Facultative 0.0000251111201
Shape:Coccus 0.00066012382
Shape:Rod 6.720e-18202347
Shape:Sphere 0.0015574219
Shape:Spiral 5.050e-6334
Temp._range:Hyperthermophilic 0.0000227123
Temp._range:Mesophilic 0.0026462220473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 177
Effective number of orgs (counting one per cluster within 468 clusters): 148

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PMOB403833 ncbi Petrotoga mobilis SJ950
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7693   EG11497   EG11311   EG10276   EG10275   
WPIP955 WD_0025
WPIP80849 WB_0699
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX750
TWHI218496
TWHI203267
TVOL273116
TSP28240 TRQ2_1738
TPET390874 TPET_1665
TPEN368408
TPAL243276
TMAR243274 TM_1079
TLET416591
TKOD69014
TFUS269800
TDEN243275 TDE_0592
TACI273075
STRO369723 STROP_2504
STOK273063
SSOL273057
SMAR399550
SCO SCO2497
SAVE227882 SAV5649
SACI330779
RTYP257363 RT0010
RSP101510
RSAL288705 RSAL33209_2908
RRIC452659 RRIOWA_0019
RRIC392021 A1G_00080
RPRO272947 RP011
RMAS416276
RFEL315456 RF_0012
RCON272944 RC0011
RCAN293613 A1E_00045
RBEL391896 A1I_01285
RBEL336407 RBE_1199
RAKA293614 A1C_00320
PTOR263820
PSP117 RB10683
PRUM264731 GFRORF1028
PMOB403833
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244 OTBS_1639
NSP35761 NOCA_1942
NSEN222891 NSE_0373
NPHA348780
NFAR247156 NFA6060
MVAN350058
MTUB419947
MTUB336982
MTHE349307 MTHE_0794
MTHE187420 MTH1917
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0068
MMOB267748
MMAR444158 MMARC6_0611
MMAR426368 MMARC7_1342
MMAR402880 MMARC5_1333
MMAR368407
MMAR267377 MMP0341
MLEP272631
MLAB410358
MKAN190192
MJAN243232 MJ_1229
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_3190
MGIL350054 MFLV_1667
MGEN243273
MFLO265311 MFL029
MCAP340047 MCAP_0837
MBOV410289
MBOV233413
MAVI243243
MART243272
MAEO419665 MAEO_1006
MABS561007
LXYL281090 LXX08490
LINT363253
LINT267671 LIC_12347
LINT189518 LA1391
LBOR355277 LBJ_2231
LBOR355276 LBL_2224
LBIF456481
LBIF355278
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0357
HPYL357544 HPAG1_0379
HPY HP1068
HMUK485914
HMAR272569
HBUT415426
HACI382638 HAC_1179
FSUC59374 FSU1561
FSP1855
FSP106370
FNUC190304 FN1608
FNOD381764 FNOD_1657
FMAG334413 FMG_0778
FALN326424
ERUM302409 ERGA_CDS_03360
ERUM254945 ERWE_CDS_03400
ECHA205920 ECH_0758
ECAN269484 ECAJ_0316
DVUL882 DVU_2339
DSP255470 CBDBA141
DSP216389 DEHABAV1_0249
DPSY177439 DP0693
DETH243164 DET_0120
DDES207559 DDE_1432
CTRA471473 CTLON_0374
CTRA471472 CTL0378
CSUL444179
CPRO264201 PC0771
CPNE182082 CPB0186
CPNE138677 CPJ0183
CPNE115713 CPN0183
CPNE115711 CP_0585
CMUR243161 TC_0399
CMIC443906 CMM_1584
CMIC31964 CMS1555
CMET456442
CMAQ397948
CKOR374847
CJEI306537 JK0383
CGLU196627 CG2841
CFEL264202
CEFF196164 CE2461
CDIP257309 DIP1903
CCAV227941 CCA_00553
CABO218497
BXEN266265
BTUR314724
BSP107806
BLON206672
BHER314723
BGAR290434
BBUR224326
BBAC264462 BD3270
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1336
APHA212042 APH_0575
APER272557
ANAE240017 ANA_0570
AMAR234826 AM492
AFUL224325 AF_0220
ACEL351607
AAUR290340 AAUR_1486


Organism features enriched in list (features available for 165 out of the 177 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.900e-9592
Arrangment:Pairs 2.272e-613112
Arrangment:Singles 0.006310893286
Disease:Leptospirosis 0.006249444
Disease:Pharyngitis 0.000036488
Disease:bronchitis_and_pneumonitis 0.000036488
Endospores:No 8.420e-1499211
Endospores:Yes 0.0013561653
GC_Content_Range4:0-40 0.006364972213
GC_Content_Range4:40-60 0.007357052224
GC_Content_Range7:0-30 4.918e-72947
GC_Content_Range7:50-60 0.001089518107
GC_Content_Range7:70-100 0.0023003811
Genome_Size_Range5:0-2 2.129e-2191155
Genome_Size_Range5:4-6 6.779e-1318184
Genome_Size_Range9:0-1 2.371e-112427
Genome_Size_Range9:1-2 3.284e-1167128
Genome_Size_Range9:4-5 3.435e-61096
Genome_Size_Range9:5-6 1.908e-6888
Gram_Stain:Gram_Neg 3.167e-670333
Habitat:Host-associated 1.266e-683206
Habitat:Multiple 2.519e-726178
Habitat:Specialized 0.00256082453
Habitat:Terrestrial 0.0080428331
Motility:No 0.003260555151
Motility:Yes 0.000372058267
Optimal_temp.:- 0.002875359257
Optimal_temp.:37 0.000217045106
Optimal_temp.:85 0.006249444
Oxygen_Req:Anaerobic 0.000029646102
Oxygen_Req:Facultative 2.083e-1124201
Shape:Coccus 0.00951151582
Shape:Irregular_coccus 3.778e-61417
Shape:Rod 2.035e-771347
Shape:Sphere 3.813e-71619
Shape:Spiral 0.00319851734
Temp._range:Hyperthermophilic 3.295e-92023
Temp._range:Mesophilic 0.0000228116473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5386 (methylglyoxal degradation I)3052130.5101
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491290.4811
GLYCOCAT-PWY (glycogen degradation I)2461800.4750
PWY-5918 (heme biosynthesis I)2721900.4588
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951510.4549
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181620.4483
PWY-4041 (γ-glutamyl cycle)2791910.4441
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392170.4409
PWY-6317 (galactose degradation I (Leloir pathway))4642630.4371
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861930.4362
PWY-6196 (serine racemization)102930.4207
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222460.4178
FAO-PWY (fatty acid β-oxidation I)4572580.4170
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001960.4146
GLUTAMINDEG-PWY (glutamine degradation I)1911430.4138
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001950.4081
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4582570.4072
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491710.4059
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491710.4059
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251590.4042



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11497   EG11311   EG10276   EG10275   
G76930.998670.9985640.9988530.998711
EG114970.9993690.9996550.999635
EG113110.99920.999213
EG102760.999992
EG10275



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PAIRWISE BLAST SCORES:

  G7693   EG11497   EG11311   EG10276   EG10275   
G76930.0f0----
EG11497-0.0f0---
EG11311--0.0f0--
EG10276---0.0f0-
EG10275----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ACETYL-COA-CARBOXYLMULTI-CPLX (acetyl-CoA carboxylase) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.400, average score: 0.971)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9987 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
   *in cand* 0.9995 0.9989 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.4442 0.0015 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.4994 0.1170 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG11311 (dusB) EG11311-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9995 0.9987 EG11497 (prmA) EG11497-MONOMER (methyltransferase for 50S ribosomal subunit protein L11)
   *in cand* 0.9990 0.9986 G7693 (yhdT) G7693-MONOMER (conserved inner membrane protein)

- PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli)) (degree of match pw to cand: 0.154, degree of match cand to pw: 0.400, average score: 0.874)
  Genes in pathway or complex:
             0.5508 0.0014 EG10277 (fabH) FABH-MONOMER (FabH)
   *in cand* 0.9995 0.9987 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
   *in cand* 0.9995 0.9989 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.4442 0.0015 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.4994 0.1170 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
             0.4597 0.0032 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
             0.4890 0.0017 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
             0.0981 0.0005 EG10274 (fabB) FABB-MONOMER (FabB)
             0.4165 0.0020 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
             0.1873 0.0009 EG11528 (fabI) ENOYL-ACP-REDUCT-NADH-MONOMER (enoyl-[acyl-carrier-protein] reductase)
             0.7993 0.3618 EG11284 (fabZ) FABZ-MONOMER (FabZ)
             0.2888 0.0042 EG10273 (fabA) FABA-MONOMER (FabA)
             0.2703 0.0022 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG11311 (dusB) EG11311-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9995 0.9987 EG11497 (prmA) EG11497-MONOMER (methyltransferase for 50S ribosomal subunit protein L11)
   *in cand* 0.9990 0.9986 G7693 (yhdT) G7693-MONOMER (conserved inner membrane protein)

- FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli)) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.400, average score: 0.877)
  Genes in pathway or complex:
             0.4597 0.0032 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9995 0.9987 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
   *in cand* 0.9995 0.9989 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.4442 0.0015 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.4994 0.1170 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
             0.5508 0.0014 EG10277 (fabH) FABH-MONOMER (FabH)
             0.0981 0.0005 EG10274 (fabB) FABB-MONOMER (FabB)
             0.4890 0.0017 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
             0.2703 0.0022 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG11311 (dusB) EG11311-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9995 0.9987 EG11497 (prmA) EG11497-MONOMER (methyltransferase for 50S ribosomal subunit protein L11)
   *in cand* 0.9990 0.9986 G7693 (yhdT) G7693-MONOMER (conserved inner membrane protein)

- PWY-4381 (fatty acid biosynthesis initiation I) (degree of match pw to cand: 0.286, degree of match cand to pw: 0.400, average score: 0.905)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9987 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
   *in cand* 0.9995 0.9989 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.4442 0.0015 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.4994 0.1170 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
             0.4597 0.0032 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
             0.5508 0.0014 EG10277 (fabH) FABH-MONOMER (FabH)
             0.2703 0.0022 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG11311 (dusB) EG11311-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9995 0.9987 EG11497 (prmA) EG11497-MONOMER (methyltransferase for 50S ribosomal subunit protein L11)
   *in cand* 0.9990 0.9986 G7693 (yhdT) G7693-MONOMER (conserved inner membrane protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10275 EG10276 EG11311 EG11497 G7693 (centered at G7693)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7693   EG11497   EG11311   EG10276   EG10275   
53/623409/623414/623401/623409/623
AAEO224324:0:Tyes-522-2120
AAUR290340:2:Tyes--0--
AAVE397945:0:Tyes-23710
ABAC204669:0:Tyes--032813282
ABAU360910:0:Tyes-2240225226
ABOR393595:0:Tyes-2410
ABUT367737:0:Tyes-409--0
ACAU438753:0:Tyes-14301410
ACRY349163:8:Tyes--0350349
ADEH290397:0:Tyes-03581408407
AEHR187272:0:Tyes-578136410
AFER243159:0:Tyes-2-10
AFUL224325:0:Tyes---0-
AHYD196024:0:Tyes-714910
ALAI441768:0:Tyes--9130-
AMAR234826:0:Tyes--0--
AMAR329726:9:Tyes-0958372632
AMET293826:0:Tyes-01500--
ANAE240017:0:Tyes--0--
AORE350688:0:Tyes-8405310
APHA212042:0:Tyes--0--
APLE416269:0:Tyes-1371017231722
APLE434271:0:Tno-1369017391738
ASAL382245:5:Tyes-1430149150
ASP1667:3:Tyes--0--
ASP232721:2:Tyes-5205354
ASP62928:0:Tyes-0207013
ASP62977:0:Tyes-64274901
ASP76114:2:Tyes-2130212211
AVAR240292:3:Tyes-325612901807
BABO262698:1:Tno-47419101
BAMB339670:3:Tno-08212
BAMB398577:3:Tno-08312
BAMY326423:0:Tyes-2279021712172
BANT260799:0:Tno-4179040574058
BANT261594:2:Tno-4106039833984
BANT568206:2:Tyes-4338042104211
BANT592021:2:Tno-4327041994200
BBAC264462:0:Tyes-0---
BBAC360095:0:Tyes---01
BBRO257310:0:Tyes-3990746401
BCAN483179:1:Tno-51421401
BCEN331271:2:Tno-09012
BCEN331272:3:Tyes-09012
BCER226900:1:Tyes-4142040164017
BCER288681:0:Tno-4040039183919
BCER315749:1:Tyes-2818026642665
BCER405917:1:Tyes-4090039583959
BCER572264:1:Tno-4164040374038
BCIC186490:0:Tyes---10
BCLA66692:0:Tyes-1593024072408
BFRA272559:1:Tyes-02704--
BFRA295405:0:Tno-03005--
BHAL272558:0:Tyes-1322027662767
BHEN283166:0:Tyes---01
BJAP224911:0:Fyes--20101
BLIC279010:0:Tyes-2563024362437
BMAL243160:1:Tno-1310130129
BMAL320388:1:Tno-1500149148
BMAL320389:1:Tyes-7300731732
BMEL224914:1:Tno-0277483482
BMEL359391:1:Tno-45918501
BOVI236:1:Tyes--16001
BPAR257311:0:Tno-3510352353
BPER257313:0:Tyes--38001
BPET94624:0:Tyes-234310
BPSE272560:1:Tyes-9109089
BPSE320372:1:Tno-1040103102
BPSE320373:1:Tno-1070106105
BPUM315750:0:Tyes-2239021262127
BQUI283165:0:Tyes---10
BSP36773:2:Tyes-09412
BSP376:0:Tyes--35401
BSUB:0:Tyes-2632025162517
BSUI204722:1:Tyes-49720701
BSUI470137:1:Tno-50821701
BTHA271848:1:Tno-09112
BTHE226186:0:Tyes-02822--
BTHU281309:1:Tno-3938038163817
BTHU412694:1:Tno-3702035963597
BTRI382640:1:Tyes---01
BVIE269482:7:Tyes-08012
BWEI315730:4:Tyes-4089039623963
CACE272562:1:Tyes-0192322872289
CAULO:0:Tyes--0145144
CBEI290402:0:Tyes-72502613964
CBLO203907:0:Tyes---01
CBLO291272:0:Tno---01
CBOT36826:1:Tno-0556628630
CBOT441770:0:Tyes-0621692694
CBOT441771:0:Tno-0563635637
CBOT441772:1:Tno-0642717719
CBOT498213:1:Tno-0572642644
CBOT508765:1:Tyes-6710927-
CBOT515621:2:Tyes-0574646648
CBOT536232:0:Tno-0597669671
CBUR227377:1:Tyes---10
CBUR360115:1:Tno---10
CBUR434922:2:Tno---01
CCAV227941:1:Tyes----0
CCHL340177:0:Tyes--0120121
CCON360104:2:Tyes-0--317
CCUR360105:0:Tyes-0--1304
CDES477974:0:Tyes-18960848847
CDIF272563:1:Tyes-5191634-0
CDIP257309:0:Tyes--0--
CEFF196164:0:Fyes--0--
CFET360106:0:Tyes-0-212213
CGLU196627:0:Tyes--0--
CHOM360107:1:Tyes-0-10441043
CHUT269798:0:Tyes--012411242
CHYD246194:0:Tyes-0189215431544
CJAP155077:0:Tyes-2510
CJEI306537:0:Tyes--0--
CJEJ192222:0:Tyes--0-1135
CJEJ195099:0:Tno--0-1327
CJEJ354242:2:Tyes--0-1109
CJEJ360109:0:Tyes--0-274
CJEJ407148:0:Tno--0-1152
CKLU431943:1:Tyes-7776120
CMIC31964:2:Tyes--0--
CMIC443906:2:Tyes--0--
CMUR243161:1:Tyes----0
CNOV386415:0:Tyes-154011020
CPEL335992:0:Tyes---01
CPER195102:1:Tyes-962145920
CPER195103:0:Tno-934138220
CPER289380:3:Tyes-845126520
CPHY357809:0:Tyes-1863096-
CPNE115711:1:Tyes----0
CPNE115713:0:Tno----0
CPNE138677:0:Tno----0
CPNE182082:0:Tno----0
CPRO264201:0:Fyes----0
CPSY167879:0:Tyes-010397398
CRUT413404:0:Tyes---10
CSAL290398:0:Tyes-2310
CSP501479:8:Fyes-01201194195
CSP78:2:Tyes--4001
CTEP194439:0:Tyes--174601
CTET212717:0:Tyes-17487220
CTRA471472:0:Tyes----0
CTRA471473:0:Tno----0
CVES412965:0:Tyes---10
CVIO243365:0:Tyes-4470448449
DARO159087:0:Tyes-2730274275
DDES207559:0:Tyes-0---
DETH243164:0:Tyes---0-
DGEO319795:1:Tyes-371--0
DHAF138119:0:Tyes-2957021912192
DNOD246195:0:Tyes-2310
DOLE96561:0:Tyes-0419--
DPSY177439:2:Tyes-0---
DRAD243230:3:Tyes-1380--0
DRED349161:0:Tyes-23450910909
DSHI398580:5:Tyes-0480296297
DSP216389:0:Tyes---0-
DSP255470:0:Tno---0-
DVUL882:1:Tyes-0---
ECAN269484:0:Tyes--0--
ECAR218491:0:Tyes-2045
ECHA205920:0:Tyes--0--
ECOL199310:0:Tno11131510
ECOL316407:0:Tno24510
ECOL331111:6:Tno24610
ECOL362663:0:Tno10121310
ECOL364106:1:Tno11131410
ECOL405955:2:Tyes11131410
ECOL409438:6:Tyes24510
ECOL413997:0:Tno24510
ECOL439855:4:Tno24510
ECOL469008:0:Tno31045
ECOL481805:0:Tno31045
ECOL585034:0:Tno24510
ECOL585035:0:Tno9111210
ECOL585055:0:Tno24510
ECOL585056:2:Tno24510
ECOL585057:0:Tno10121310
ECOL585397:0:Tno10121310
ECOL83334:0:Tno24510
ECOLI:0:Tno24510
ECOO157:0:Tno24510
EFAE226185:3:Tyes-160202447-
EFER585054:1:Tyes24510
ELIT314225:0:Tyes--65101
ERUM254945:0:Tyes--0--
ERUM302409:0:Tno--0--
ESP42895:1:Tyes24610
FJOH376686:0:Tyes--43001
FMAG334413:1:Tyes-0---
FNOD381764:0:Tyes-0---
FNUC190304:0:Tyes-0---
FPHI484022:1:Tyes-1677167601
FRANT:0:Tno-414210
FSUC59374:0:Tyes-0---
FTUL351581:0:Tno-01544545
FTUL393011:0:Tno-01478479
FTUL393115:0:Tyes-404110
FTUL401614:0:Tyes-42242110
FTUL418136:0:Tno-10452453
FTUL458234:0:Tno-01485486
GBET391165:0:Tyes--0729730
GFOR411154:0:Tyes--01312
GKAU235909:1:Tyes-2513024102411
GMET269799:1:Tyes-2405158110
GOXY290633:5:Tyes-19433201
GSUL243231:0:Tyes-055515631564
GTHE420246:1:Tyes-2323022172218
GURA351605:0:Tyes-33580907906
GVIO251221:0:Tyes-11050978242
HACI382638:1:Tyes-0---
HARS204773:0:Tyes-2366023652364
HAUR316274:2:Tyes-237472304011
HCHE349521:0:Tyes-2410
HDUC233412:0:Tyes5750386540539
HHAL349124:0:Tyes-0-335336
HHEP235279:0:Tyes-649--0
HINF281310:0:Tyes25610
HINF374930:0:Tyes51067
HINF71421:0:Tno47810
HMOD498761:0:Tyes-195080601
HNEP81032:0:Tyes--0233232
HPY:0:Tno-0---
HPYL357544:1:Tyes-0---
HPYL85963:0:Tno-0---
HSOM205914:1:Tyes-1045
HSOM228400:0:Tno-3410
ILOI283942:0:Tyes-2310
JSP290400:1:Tyes-0128517741773
JSP375286:0:Tyes-2704027032702
KPNE272620:2:Tyes24510
LACI272621:0:Tyes-6600--
LBOR355276:1:Tyes-0---
LBOR355277:1:Tno-0---
LBRE387344:2:Tyes-1850-383
LCAS321967:1:Tyes-0966-559
LCHO395495:0:Tyes-3482034813480
LDEL321956:0:Tyes-4260-440
LDEL390333:0:Tyes-4260-442
LGAS324831:0:Tyes-5570--
LHEL405566:0:Tyes-6100--
LINN272626:1:Tno-1261011471146
LINT189518:1:Tyes-0---
LINT267671:1:Tno-0---
LJOH257314:0:Tyes-9100--
LLAC272622:5:Tyes-02007695-
LLAC272623:0:Tyes-01858675673
LMES203120:1:Tyes-846--0
LMON169963:0:Tno-1260011461145
LMON265669:0:Tyes-1240011241123
LPLA220668:0:Tyes-12420-977
LPNE272624:0:Tno-0-12
LPNE297245:1:Fno-0-12
LPNE297246:1:Fyes-0-12
LPNE400673:0:Tno-2-10
LREU557436:0:Tyes-4840--
LSAK314315:0:Tyes-0873-83
LSPH444177:1:Tyes--0-3344
LWEL386043:0:Tyes-1295011811180
LXYL281090:0:Tyes--0--
MACE188937:0:Tyes--0623-
MAEO419665:0:Tyes---0-
MAER449447:0:Tyes-3432-04062
MAQU351348:2:Tyes-2410
MBAR269797:1:Tyes--0577-
MBUR259564:0:Tyes--0264-
MCAP243233:0:Tyes-266310
MCAP340047:0:Tyes--0--
MEXT419610:0:Tyes--172810
MFLA265072:0:Tyes-032812
MFLO265311:0:Tyes--0--
MGIL350054:3:Tyes--0--
MHUN323259:0:Tyes---0-
MJAN243232:2:Tyes---0-
MLOT266835:2:Tyes-106015101
MMAG342108:0:Tyes-0163919821981
MMAR267377:0:Tyes---0-
MMAR394221:0:Tyes-79517501
MMAR402880:1:Tyes---0-
MMAR426368:0:Tyes---0-
MMAR444158:0:Tyes---0-
MMAZ192952:0:Tyes--0495-
MMYC272632:0:Tyes--0--
MPET420662:1:Tyes-2715027142713
MSP266779:3:Tyes--09695
MSP400668:0:Tyes-2410
MSP409:2:Tyes--47201
MSUC221988:0:Tyes12941012951296
MTHE187420:0:Tyes---0-
MTHE264732:0:Tyes-418013481349
MTHE349307:0:Tyes---0-
MXAN246197:0:Tyes-0499044684469
NARO279238:0:Tyes--0160159
NEUR228410:0:Tyes-222410
NEUT335283:2:Tyes-6840685686
NFAR247156:2:Tyes--0--
NGON242231:0:Tyes-09912
NHAM323097:2:Tyes--0339338
NMEN122586:0:Tno-4250424423
NMEN122587:0:Tyes-096012
NMEN272831:0:Tno-087712
NMEN374833:0:Tno-095412
NMUL323848:3:Tyes-2598025992600
NOCE323261:1:Tyes-0-12
NSEN222891:0:Tyes--0--
NSP103690:6:Tyes-95528804161
NSP35761:1:Tyes--0--
NSP387092:0:Tyes-2210-455
NWIN323098:0:Tyes--0318317
OANT439375:5:Tyes-0317527526
OCAR504832:0:Tyes-0835720721
OIHE221109:0:Tyes-87-01
OTSU357244:0:Fyes--0--
PAER208963:0:Tyes-3510
PAER208964:0:Tno-3510
PARC259536:0:Tyes-2467410
PATL342610:0:Tyes-318110
PCAR338963:0:Tyes-10930135136
PCRY335284:1:Tyes-56608687
PDIS435591:0:Tyes-02884--
PENT384676:0:Tyes-2410
PFLU205922:0:Tyes-2034
PFLU216595:1:Tyes-2032924
PFLU220664:0:Tyes-2034
PGIN242619:0:Tyes-5480--
PHAL326442:1:Tyes-848310
PING357804:0:Tyes-01--
PINT246198:1:Tyes-10640--
PLUM243265:0:Fyes11131410
PLUT319225:0:Tyes--0-1637
PMAR146891:0:Tyes-1525-460
PMAR167539:0:Tyes-1441-490
PMAR167540:0:Tyes-13571003350
PMAR167542:0:Tyes-1530-440
PMAR167546:0:Tyes-1515-460
PMAR167555:0:Tyes-1780-990
PMAR59920:0:Tno-0-507437
PMAR74546:0:Tyes-1455-370
PMAR74547:0:Tyes-1422-15840
PMAR93060:0:Tyes-1583-480
PMEN399739:0:Tyes-2034
PMUL272843:1:Tyes31045
PNAP365044:8:Tyes-3103233
PPEN278197:0:Tyes-0386--
PPRO298386:2:Tyes24510
PPUT160488:0:Tno-4248425001
PPUT351746:0:Tyes-4126412801
PPUT76869:0:Tno-4316431801
PRUM264731:0:Tyes-0---
PSP117:0:Tyes--0--
PSP296591:2:Tyes-23210
PSP312153:0:Tyes-0168712
PSP56811:2:Tyes-67201297707
PSTU379731:0:Tyes-2410
PSYR205918:0:Tyes-2410
PSYR223283:2:Tyes-1913191501911
PTHE370438:0:Tyes-6400952951
RAKA293614:0:Fyes--0--
RALB246199:0:Tyes-273983470
RBEL336407:0:Tyes--0--
RBEL391896:0:Fno--0--
RCAN293613:0:Fyes--0--
RCAS383372:0:Tyes-0-2126749
RCON272944:0:Tno--0--
RDEN375451:4:Tyes-0621705704
RETL347834:5:Tyes--7701
REUT264198:3:Tyes-2398023972396
REUT381666:2:Tyes-2595025942593
RFEL315456:2:Tyes--0--
RFER338969:1:Tyes-1771017721773
RLEG216596:6:Tyes--16801
RMET266264:2:Tyes-2623026222621
RPAL258594:0:Tyes-109516101
RPAL316055:0:Tyes-0624856855
RPAL316056:0:Tyes-7160295294
RPAL316057:0:Tyes-96216101
RPAL316058:0:Tyes-088010211020
RPOM246200:1:Tyes-2063105701
RPRO272947:0:Tyes--0--
RRIC392021:0:Fno--0--
RRIC452659:0:Tyes--0--
RRUB269796:1:Tyes--0759758
RSAL288705:0:Tyes--0--
RSOL267608:0:Tyes---0-
RSOL267608:1:Tyes-23270-2325
RSP357808:0:Tyes-0-166135
RSPH272943:4:Tyes-7720399398
RSPH349101:2:Tno-7580372371
RSPH349102:5:Tyes-0252220221
RTYP257363:0:Tno--0--
RXYL266117:0:Tyes---10
SACI56780:0:Tyes-0163--
SAGA205921:0:Tno-145513730-
SAGA208435:0:Tno-158514420-
SAGA211110:0:Tyes-160115110-
SALA317655:1:Tyes--0167166
SARE391037:0:Tyes--1085-0
SAUR158878:1:Tno-52-01
SAUR158879:1:Tno-51-01
SAUR196620:0:Tno-51-01
SAUR273036:0:Tno-50-01
SAUR282458:0:Tno-50-01
SAUR282459:0:Tno-50-01
SAUR359786:1:Tno-51-01
SAUR359787:1:Tno-52-01
SAUR367830:3:Tno-62-01
SAUR418127:0:Tyes-51-01
SAUR426430:0:Tno-50-01
SAUR93061:0:Fno-54-01
SAUR93062:1:Tno-63-01
SAVE227882:1:Fyes--0--
SBAL399599:3:Tyes-102103-0
SBAL402882:1:Tno-109110-0
SBOY300268:1:Tyes11511711801
SCO:2:Fyes--0--
SDEG203122:0:Tyes-2034
SDEN318161:0:Tyes-10--
SDYS300267:1:Tyes24510
SELO269084:0:Tyes-2359107401403
SENT209261:0:Tno24510
SENT220341:0:Tno24510
SENT295319:0:Tno24510
SENT321314:2:Tno24510
SENT454169:2:Tno24510
SEPI176279:1:Tyes-57--0
SEPI176280:0:Tno-57--0
SERY405948:0:Tyes--6928-0
SFLE198214:0:Tyes24510
SFLE373384:0:Tno24510
SFUM335543:0:Tyes-20680--
SGLO343509:3:Tyes-0-12
SGOR29390:0:Tyes-12727902
SHAE279808:0:Tyes-0--50
SHAL458817:0:Tyes-33893390-0
SHIGELLA:0:Tno24510
SLAC55218:1:Fyes-0242118721873
SLOI323850:0:Tyes-1031183117
SMED366394:3:Tyes-108113301
SMEL266834:2:Tyes-85514301
SMUT210007:0:Tyes-17400-1432
SONE211586:1:Tyes-10-115
SPEA398579:0:Tno-10-154
SPNE1313:0:Tyes-1217168820
SPNE170187:0:Tyes-755-20
SPNE171101:0:Tno-1231167020
SPNE487213:0:Tno-1169159220
SPNE487214:0:Tno-1320174920
SPNE488221:0:Tno-1265168620
SPRO399741:1:Tyes24610
SPYO160490:0:Tno-146701277-
SPYO186103:0:Tno-159901408-
SPYO193567:0:Tno-16400256-
SPYO198466:0:Tno-161501424-
SPYO286636:0:Tno-157701350-
SPYO293653:0:Tno-160401391-
SPYO319701:0:Tyes-159101382-
SPYO370551:0:Tno-161001399-
SPYO370552:0:Tno-16750--
SPYO370553:0:Tno-162901422-
SPYO370554:0:Tyes-169501450-
SRUB309807:1:Tyes--1552-0
SSAP342451:2:Tyes-0-4948
SSED425104:0:Tyes-282910
SSON300269:1:Tyes24510
SSP1131:0:Tyes-2115-22260
SSP1148:0:Tyes-0111710491002
SSP292414:2:Tyes-10280159158
SSP321327:0:Tyes-15627510396
SSP321332:0:Tyes-25211699340
SSP387093:0:Tyes-6390--
SSP644076:6:Fyes-0---
SSP644076:7:Fyes--15801
SSP64471:0:Tyes-218053923800
SSP84588:0:Tyes-511-3100
SSP94122:1:Tyes-10-108
SSUI391295:0:Tyes-3111710-
SSUI391296:0:Tyes-31317202
STHE264199:0:Tyes-044247245
STHE292459:0:Tyes-02730717-
STHE299768:0:Tno-043241239
STHE322159:2:Tyes-030207205
STRO369723:0:Tyes----0
STYP99287:1:Tyes24510
SWOL335541:0:Tyes-14130427426
TCRU317025:0:Tyes-1023
TDEN243275:0:Tyes----0
TDEN292415:0:Tyes-0231712
TDEN326298:0:Tyes-5090--
TELO197221:0:Tyes-06751504983
TERY203124:0:Tyes-2560721270
TMAR243274:0:Tyes-0---
TPET390874:0:Tno-0---
TPSE340099:0:Tyes-0526--
TROS309801:1:Tyes-0-12301307
TSP1755:0:Tyes-17590--
TSP28240:0:Tyes-0---
TTEN273068:0:Tyes-5940--
TTHE262724:1:Tyes---01
TTHE300852:2:Tyes---01
TTUR377629:0:Tyes-2410
UMET351160:0:Tyes---0-
VCHO:0:Tyes-2045
VCHO345073:1:Tno-1023
VEIS391735:1:Tyes-2153210
VFIS312309:2:Tyes-2410
VPAR223926:1:Tyes-3410
VVUL196600:2:Tyes-2310
VVUL216895:1:Tno-1023
WPIP80849:0:Tyes--0--
WPIP955:0:Tyes--0--
WSUC273121:0:Tyes-0-419418
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