CANDIDATE ID: 684

CANDIDATE ID: 684

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9927150e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7352 (bamD) (bamD)
   Products of gene:
     - G7352-MONOMER (BamD)
     - CPLX0-3933 (Outer Membrane Protein Assembly Complex)

- EG10831 (recN) (b2616)
   Products of gene:
     - EG10831-MONOMER (protein used in recombination and DNA repair)

- EG10347 (ftsZ) (b0095)
   Products of gene:
     - EG10347-MONOMER (essential cell division protein FtsZ)

- EG10339 (ftsA) (b0094)
   Products of gene:
     - EG10339-MONOMER (essential cell division protein FtsA)

- EG10265 (lpxC) (b0096)
   Products of gene:
     - UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
       Reactions:
        UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetylglucosamine + H2O  ->  UDP-3-O-(3-hydroxymyristoyl)glucosamine + acetate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         NAGLIPASYN-PWY (lipid IVA biosynthesis)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 269
Effective number of orgs (counting one per cluster within 468 clusters): 188

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSP644076 Silicibacter sp. TrichCH4B5
SSP292414 ncbi Ruegeria sp. TM10405
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SALA317655 ncbi Sphingopyxis alaskensis RB22564
SACI56780 ncbi Syntrophus aciditrophicus SB5
RTYP257363 ncbi Rickettsia typhi Wilmington4
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RRIC452659 ncbi Rickettsia rickettsii Iowa5
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith5
RPRO272947 ncbi Rickettsia prowazekii Madrid E4
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH345
RMAS416276 ncbi Rickettsia massiliae MTU55
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1185
RFEL315456 ncbi Rickettsia felis URRWXCal24
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RCON272944 ncbi Rickettsia conorii Malish 75
RCAN293613 ncbi Rickettsia canadensis McKiel4
RBEL391896 ncbi Rickettsia bellii OSU 85-3895
RBEL336407 ncbi Rickettsia bellii RML369-C5
RAKA293614 ncbi Rickettsia akari Hartford5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2555
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NHAM323097 ncbi Nitrobacter hamburgensis X145
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL15
MSP266779 ncbi Chelativorans sp. BNC15
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS105
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA15
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-004
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
JSP290400 ncbi Jannaschia sp. CCS15
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HNEP81032 Hyphomonas neptunium5
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf45
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-155
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd35
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus5
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN4
CBLO203907 ncbi Candidatus Blochmannia floridanus4
CAULO ncbi Caulobacter crescentus CB155
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTRI382640 ncbi Bartonella tribocorum CIP 1054765
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.5
BQUI283165 ncbi Bartonella quintana Toulouse5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHEN283166 ncbi Bartonella henselae Houston-15
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC360095 ncbi Bartonella bacilliformis KC5835
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-55
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  G7352   EG10831   EG10347   EG10339   EG10265   
ZMOB264203 ZMO1758ZMO1956ZMO0837ZMO0836
YPSE349747 YPSIP31758_3215YPSIP31758_2889YPSIP31758_3382YPSIP31758_3383YPSIP31758_3381
YPSE273123 YPTB0845YPTB1139YPTB0693YPTB0692YPTB0694
YPES386656 YPDSF_2914YPDSF_2592YPDSF_3082YPDSF_3083YPDSF_3081
YPES377628 YPN_0818YPN_2893YPN_0426YPN_0425YPN_0427
YPES360102 YPA_2769YPA_0583YPA_3541YPA_3542YPA_3540
YPES349746 YPANGOLA_A3478YPANGOLA_A1376YPANGOLA_A2913YPANGOLA_A2914YPANGOLA_A2912
YPES214092 YPO3278YPO1105YPO0560YPO0559YPO0561
YPES187410 Y0911Y3075Y3621Y3622Y3620
YENT393305 YE0890YE0998YE0677YE0676YE0678
XORY360094 XOOORF_1542XOOORF_2974XOOORF_1084XOOORF_1083XOOORF_1085
XORY342109 XOO1480XOO1910XOO3599XOO3600XOO3598
XORY291331 XOO1596XOO2028XOO3822XOO3823XOO3821
XFAS405440 XFASM12_1919XFASM12_1515XFASM12_2043XFASM12_2044XFASM12_2042
XFAS183190 PD_1756PD_1373PD_1861PD_1862PD_1860
XFAS160492 XF0938XF2343XF0802XF0801XF0803
XCAM487884 XCC-B100_1102XCC-B100_2802XCC-B100_3626XCC-B100_3627XCC-B100_3625
XCAM316273 XCAORF_3431XCAORF_1734XCAORF_0898XCAORF_0896XCAORF_0899
XCAM314565 XC_1069XC_2766XC_3505XC_3506XC_3504
XCAM190485 XCC3089XCC1471XCC0730XCC0729XCC0731
XAXO190486 XAC3218XAC1519XAC0784XAC0783XAC0785
XAUT78245 XAUT_0330XAUT_0331XAUT_0328XAUT_0327XAUT_0329
VVUL216895 VV1_0485VV1_0367VV1_0572VV1_0574VV1_0571
VVUL196600 VV0712VV0822VV0618VV0617VV0619
VPAR223926 VP0558VP0648VP0464VP0463VP0465
VFIS312309 VF0563VF1998VF2196VF2197VF2195
VEIS391735 VEIS_4485VEIS_1052VEIS_4575VEIS_4574VEIS_1529
VCHO345073 VC0395_A0237VC0395_A0378VC0395_A1975VC0395_A1976VC0395_A1974
VCHO VC0708VC0852VC2397VC2398VC2396
TTUR377629 TERTU_1052TERTU_3298TERTU_3044TERTU_3045TERTU_3043
TDEN292415 TBD_0809TBD_2030TBD_0125TBD_0124TBD_0126
TCRU317025 TCR_1371TCR_0866TCR_0560TCR_0587TCR_0588
STYP99287 STM2663STM2684STM0133STM0132STM0134
SSP94122 SHEWANA3_3172SHEWANA3_1104SHEWANA3_3739SHEWANA3_3740SHEWANA3_3738
SSP644076 SCH4B_4012SCH4B_4013SCH4B_4010SCH4B_4009SCH4B_4011
SSP292414 TM1040_0691TM1040_0692TM1040_0689TM1040_0688TM1040_0690
SSON300269 SSO_2721SSO_2772SSO_0103SSO_0102SSO_0104
SSED425104 SSED_3500SSED_1281SSED_0414SSED_0413SSED_0415
SRUB309807 SRU_2073SRU_0800SRU_0564SRU_0563
SPRO399741 SPRO_0883SPRO_3686SPRO_0766SPRO_0765SPRO_0767
SPEA398579 SPEA_3167SPEA_1169SPEA_3807SPEA_3808SPEA_3806
SONE211586 SO_3580SO_3462SO_4215SO_4216SO_4214
SMEL266834 SMC01876SMC01877SMC01873SMC01875
SMED366394 SMED_2072SMED_2071SMED_2075SMED_2073
SLOI323850 SHEW_2951SHEW_1196SHEW_3449SHEW_3450SHEW_3448
SLAC55218 SL1157_3402SL1157_3401SL1157_3404SL1157_3407SL1157_3403
SHIGELLA S2828RECNFTSZFTSALPXC
SHAL458817 SHAL_3249SHAL_1212SHAL_0459SHAL_0458SHAL_0460
SGLO343509 SG0582SG1800SG0453SG0452SG0454
SFUM335543 SFUM_1710SFUM_3096SFUM_3474SFUM_3473SFUM_1931
SFLE373384 SFV_2657SFV_2855SFV_0088SFV_0087SFV_0089
SFLE198214 AAN44148.1AAN44170.1AAN41757.1AAN41756.1AAN41758.1
SENT454169 SEHA_C2880SEHA_C2899SEHA_C0145SEHA_C0144SEHA_C0146
SENT321314 SCH_2666SCH_2684SCH_0130SCH_0129SCH_0131
SENT295319 SPA2524SPA2543SPA0135SPA0134SPA0136
SENT220341 STY2852STY2870STY0153STY0152STY0154
SENT209261 T2619T2638T0137T0136T0138
SDYS300267 SDY_2838SDY_2789SDY_0125SDY_0124SDY_0126
SDEN318161 SDEN_2864SDEN_1151SDEN_0359SDEN_0358SDEN_0360
SDEG203122 SDE_2552SDE_2735SDE_0853SDE_0852SDE_0854
SBOY300268 SBO_2630SBO_2751SBO_0082SBO_0083
SBAL402882 SHEW185_1085SHEW185_3151SHEW185_0405SHEW185_0404SHEW185_0406
SBAL399599 SBAL195_1118SBAL195_3296SBAL195_0417SBAL195_0416SBAL195_0418
SALA317655 SALA_0545SALA_0546SALA_1875SALA_1876
SACI56780 SYN_00044SYN_02862SYN_00437SYN_03127SYN_00756
RTYP257363 RT0174RT0658RT0243RT0246
RSPH349102 RSPH17025_0702RSPH17025_0703RSPH17025_0700RSPH17025_0699RSPH17025_0701
RSPH349101 RSPH17029_0792RSPH17029_0793RSPH17029_0790RSPH17029_0789RSPH17029_0791
RSPH272943 RSP_2117RSP_2118RSP_2114RSP_2113RSP_2115
RSOL267608 RSC1627RSC2651RSC2839RSC2840RSC2837
RRUB269796 RRU_A0941RRU_A0940RRU_A0944RRU_A0945RRU_A0943
RRIC452659 RRIOWA_0285RRIOWA_0284RRIOWA_1207RRIOWA_0405RRIOWA_0409
RRIC392021 A1G_01315A1G_01310A1G_05600A1G_01920A1G_01940
RPRO272947 RP183RP666RP251RP254
RPOM246200 SPO_1206SPO_1207SPO_1204SPO_1203SPO_1205
RPAL316058 RPB_2006RPB_2007RPB_2003RPB_2005
RPAL316057 RPD_3384RPD_3383RPD_3386RPD_3387RPD_3385
RPAL316056 RPC_3296RPC_3295RPC_3298RPC_3299RPC_3297
RPAL316055 RPE_2118RPE_2119RPE_2116RPE_2115RPE_2117
RPAL258594 RPA3520RPA3519RPA3522RPA3523RPA3521
RMET266264 RMET_1352RMET_0998RMET_3123RMET_3124RMET_3121
RMAS416276 RMA_0243RMA_0242RMA_1048RMA_0343RMA_0347
RLEG216596 RL3296RL3295RL3299RL3297
RFER338969 RFER_2315RFER_1652RFER_3420RFER_3421RFER_3414
RFEL315456 RF_1088RF_0270RF_1033RF_1028
REUT381666 H16_A1433H16_A1131H16_A3268H16_A3269H16_A3266
REUT264198 REUT_A1343REUT_A1034REUT_A2974REUT_A2975REUT_A2972
RETL347834 RHE_CH02838RHE_CH02837RHE_CH02841RHE_CH02839
RDEN375451 RD1_3345RD1_3344RD1_3349RD1_3346
RCON272944 RC0230RC0229RC1015RC0335RC0339
RCAN293613 A1E_00915A1E_04405A1E_01440A1E_01465
RBEL391896 A1I_01815A1I_01820A1I_01985A1I_03870A1I_03890
RBEL336407 RBE_1102RBE_1101RBE_1071RBE_0958RBE_0954
RAKA293614 A1C_01315A1C_01310A1C_05145A1C_01820A1C_01850
PSYR223283 PSPTO_0826PSPTO_4507PSPTO_4403PSPTO_4404PSPTO_4402
PSYR205918 PSYR_0725PSYR_4197PSYR_4097PSYR_4098PSYR_4096
PSTU379731 PST_3643PST_3329PST_1087PST_1086PST_1088
PSP56811 PSYCPRWF_1573PSYCPRWF_0145PSYCPRWF_0529PSYCPRWF_0530
PSP312153 PNUC_0920PNUC_1774PNUC_0172PNUC_0171PNUC_0174
PSP296591 BPRO_2616BPRO_1301BPRO_1080BPRO_1079BPRO_1081
PPUT76869 PPUTGB1_0668PPUTGB1_4730PPUTGB1_4507PPUTGB1_4508PPUTGB1_4506
PPUT351746 PPUT_0662PPUT_4595PPUT_4382PPUT_4383PPUT_4381
PPUT160488 PP_0622PP_4729PP_1342PP_1341PP_1343
PPRO298386 PBPRA3022PBPRA0694PBPRA3211PBPRA3212PBPRA3210
PNAP365044 PNAP_1864PNAP_0907PNAP_3412PNAP_3413PNAP_3411
PMUL272843 PM1720PM0332PM0147PM0146PM0148
PMEN399739 PMEN_0968PMEN_3626PMEN_0927PMEN_0926PMEN_0928
PLUM243265 PLU1267PLU3374PLU3649PLU3650PLU3648
PING357804 PING_3266PING_0914PING_1152PING_1151PING_1153
PHAL326442 PSHAA0932PSHAA1218PSHAA2499PSHAA2500PSHAA2498
PFLU220664 PFL_5307PFL_0825PFL_5056PFL_5057PFL_5055
PFLU216595 PFLU0779PFLU5271PFLU0952PFLU0951PFLU0953
PFLU205922 PFL_4837PFL_0761PFL_4668PFL_4669PFL_4667
PENT384676 PSEEN4681PSEEN0776PSEEN4480PSEEN4481PSEEN4479
PCRY335284 PCRYO_1126PCRYO_0063PCRYO_2027PCRYO_2026
PCAR338963 PCAR_2383PCAR_2326PCAR_2196PCAR_2197PCAR_2343
PATL342610 PATL_1334PATL_1714PATL_3514PATL_3515PATL_3513
PARC259536 PSYC_1258PSYC_0058PSYC_1745PSYC_1744
PAER208964 PA4545PA4763PA4407PA4408PA4406
PAER208963 PA14_60230PA14_63010PA14_57275PA14_57290PA14_57260
OCAR504832 OCAR_5252OCAR_5253OCAR_5249OCAR_5251
OANT439375 OANT_1752OANT_1753OANT_1750OANT_1749OANT_1751
NWIN323098 NWI_1060NWI_1061NWI_1058NWI_1057NWI_1059
NOCE323261 NOC_0716NOC_1191NOC_2855NOC_2856NOC_2854
NMUL323848 NMUL_A1975NMUL_A2421NMUL_A2488NMUL_A2489
NMEN374833 NMCC_0662NMCC_0701NMCC_1717NMCC_1718NMCC_0020
NMEN272831 NMC0653NMC0694NMC1737NMC1738NMC0001
NMEN122587 NMA0907NMA0952NMA2057NMA2058NMA0263
NMEN122586 NMB_0703NMB_0740NMB_0427NMB_0426NMB_0017
NHAM323097 NHAM_1288NHAM_1289NHAM_1286NHAM_1285NHAM_1287
NGON242231 NGO0277NGO0318NGO1528NGO1529NGO2065
NEUT335283 NEUT_1229NEUT_0767NEUT_0240NEUT_0241
NEUR228410 NE0506NE1479NE0997NE0996
NARO279238 SARO_1732SARO_1736SARO_1139SARO_1138
MXAN246197 MXAN_1998MXAN_5350MXAN_5597MXAN_5599MXAN_4967
MSUC221988 MS1820MS0741MS1661MS1662MS1659
MSP409 M446_6695M446_6694M446_6697M446_6698M446_6696
MSP400668 MMWYL1_3612MMWYL1_3966MMWYL1_2609MMWYL1_2610MMWYL1_2608
MSP266779 MESO_1999MESO_1998MESO_2001MESO_2002MESO_2000
MPET420662 MPE_A2004MPE_A3335MPE_A0467MPE_A0466MPE_A0468
MMAR394221 MMAR10_2068MMAR10_2067MMAR10_2070MMAR10_2072MMAR10_2069
MMAG342108 AMB3856AMB3857AMB3854AMB3853AMB3855
MLOT266835 MLL1543MLL1541MLL1546MLL1549MLL1545
MFLA265072 MFLA_1613MFLA_0775MFLA_2263MFLA_2264MFLA_2262
MEXT419610 MEXT_2951MEXT_2954MEXT_2949MEXT_2948MEXT_2950
MCAP243233 MCA_0971MCA_1860MCA_2423MCA_2424MCA_2422
MAQU351348 MAQU_0877MAQU_3364MAQU_2447MAQU_2448MAQU_2446
LPNE400673 LPC_0653LPC_3111LPC_0532LPC_0531LPC_0533
LPNE297246 LPP1188LPP2877LPP2662LPP2663LPP2661
LPNE297245 LPL1194LPL2739LPL2532LPL2533LPL2531
LPNE272624 LPG1186LPG2824LPG2609LPG2610LPG2608
LINT363253 LI0365LI1109LI1108LI0627
LCHO395495 LCHO_2876LCHO_3489LCHO_0527LCHO_0526LCHO_0528
KPNE272620 GKPORF_B2250GKPORF_B2271GKPORF_B4378GKPORF_B4377GKPORF_B4380
JSP375286 MMA_1392MMA_2886MMA_3010MMA_3011MMA_3008
JSP290400 JANN_2748JANN_2747JANN_2750JANN_2751JANN_2749
ILOI283942 IL1184IL0989IL0441IL0440IL0442
HSOM228400 HSM_0636HSM_0991HSM_0633HSM_0632HSM_0634
HSOM205914 HS_0366HS_0651HS_0363HS_0362HS_0364
HNEP81032 HNE_0387HNE_0385HNE_0390HNE_0391HNE_0389
HINF71421 HI_0177HI_0070HI_1143HI_1142HI_1144
HINF374930 CGSHIEE_02415CGSHIEE_02940CGSHIEE_06330CGSHIEE_06325
HINF281310 NTHI0266NTHI0083NTHI1311NTHI1310NTHI1312
HHAL349124 HHAL_2236HHAL_1480HHAL_2085HHAL_2086HHAL_2084
HDUC233412 HD_0470HD_0815HD_0817HD_0818HD_0816
HCHE349521 HCH_05922HCH_01222HCH_05877HCH_05879HCH_05876
HARS204773 HEAR1927HEAR2651HEAR2806HEAR2807HEAR2803
GURA351605 GURA_4007GURA_1707GURA_3968GURA_3969GURA_1387
GSUL243231 GSU_2064GSU_3063GSU_3064GSU_0731
GOXY290633 GOX0166GOX0164GOX0163GOX0165
GMET269799 GMET_3014GMET_0942GMET_0417GMET_0416GMET_2607
GBET391165 GBCGDNIH1_0421GBCGDNIH1_0420GBCGDNIH1_0423GBCGDNIH1_0424GBCGDNIH1_0422
FTUL458234 FTA_0739FTA_0412FTA_2014FTA_2015FTA_2013
FTUL418136 FTW_0700FTW_1293FTW_1903FTW_1904FTW_1902
FTUL401614 FTN_1263FTN_0412FTN_0164FTN_0163FTN_0165
FTUL393115 FTF1244CFTF0886FTF0188FTF0187FTF0189
FTUL393011 FTH_0702FTH_0380FTH_1830FTH_1831FTH_1829
FTUL351581 FTL_0700FTL_0389FTL_1907FTL_1908FTL_1906
FRANT YFIOFT.0887FTSZFTSALPXC
FPHI484022 FPHI_1421FPHI_0425FPHI_0660FPHI_0661FPHI_0658
ESP42895 ENT638_3075ENT638_3096ENT638_0641ENT638_0640ENT638_0642
EFER585054 EFER_0472EFER_0457EFER_0117EFER_0116EFER_0118
ECOO157 Z3889RECNFTSZFTSALPXC
ECOL83334 ECS3458ECS3478ECS0099ECS0098ECS0100
ECOL585397 ECED1_3036ECED1_3054ECED1_0096ECED1_0095ECED1_0097
ECOL585057 ECIAI39_2800ECIAI39_2819ECIAI39_0098ECIAI39_0097ECIAI39_0099
ECOL585056 ECUMN_2922ECUMN_2940ECUMN_0095ECUMN_0094ECUMN_0096
ECOL585055 EC55989_2886EC55989_2904EC55989_0091EC55989_0090EC55989_0092
ECOL585035 ECS88_2783ECS88_2802ECS88_0099ECS88_0097ECS88_0100
ECOL585034 ECIAI1_2718ECIAI1_2737ECIAI1_0095ECIAI1_0093ECIAI1_0096
ECOL481805 ECOLC_1086ECOLC_1068ECOLC_3562ECOLC_3563ECOLC_3561
ECOL469008 ECBD_1089ECBD_1071ECBD_3522ECBD_3523ECBD_3521
ECOL439855 ECSMS35_2749ECSMS35_2768ECSMS35_0100ECSMS35_0099ECSMS35_0101
ECOL413997 ECB_02485ECB_02504ECB_00096ECB_00095ECB_00097
ECOL409438 ECSE_2881ECSE_2899ECSE_0097ECSE_0096ECSE_0098
ECOL405955 APECO1_3935APECO1_3918APECO1_1891APECO1_1892APECO1_1890
ECOL364106 UTI89_C2928UTI89_C2950UTI89_C0104UTI89_C0103UTI89_C0105
ECOL362663 ECP_2598ECP_2616ECP_0097ECP_0096ECP_0098
ECOL331111 ECE24377A_2881ECE24377A_2900ECE24377A_0097ECE24377A_0096ECE24377A_0098
ECOL316407 ECK2593:JW2577:B2595ECK2612:JW5416:B2616ECK0096:JW0093:B0095ECK0095:JW0092:B0094ECK0097:JW0094:B0096
ECOL199310 C3117C3138C0113C0112C0114
ECAR218491 ECA3348ECA0840ECA3810ECA3811ECA3809
DVUL882 DVU_1837DVU_2499DVU_2500DVU_2917
DSHI398580 DSHI_2414DSHI_2413DSHI_2416DSHI_2417DSHI_2415
DPSY177439 DP0808DP2893DP2894DP1939
DOLE96561 DOLE_2055DOLE_2516DOLE_2782DOLE_2783DOLE_2736
DNOD246195 DNO_1310DNO_1063DNO_0976DNO_0977DNO_0975
DDES207559 DDE_2065DDE_1047DDE_1046DDE_2986
DARO159087 DARO_1603DARO_0932DARO_3493DARO_3494DARO_3492
CVIO243365 CV_2193CV_2321CV_4338CV_4339CV_4337
CSP78 CAUL_3100CAUL_3099CAUL_3657CAUL_3658CAUL_3101
CSP501479 CSE45_2529CSE45_2528CSE45_2531CSE45_2533CSE45_2530
CSAL290398 CSAL_0496CSAL_3096CSAL_2185CSAL_2186CSAL_2184
CPSY167879 CPS_3916CPS_3825CPS_4459CPS_4461CPS_4457
CJAP155077 CJA_3206CJA_3351CJA_2923CJA_2925CJA_2921
CBUR434922 COXBU7E912_0772COXBU7E912_1385COXBU7E912_1966COXBU7E912_1967COXBU7E912_1965
CBUR360115 COXBURSA331_A1193COXBURSA331_A1446COXBURSA331_A0230COXBURSA331_A0229COXBURSA331_A0231
CBUR227377 CBU_0758CBU_1297CBU_0141CBU_0140CBU_0142
CBLO291272 BPEN_186BPEN_150BPEN_149BPEN_151
CBLO203907 BFL180BFL146BFL145BFL147
CAULO CC1984CC1983CC2540CC2541CC1985
BVIE269482 BCEP1808_1721BCEP1808_0704BCEP1808_0540BCEP1808_0539BCEP1808_0542
BTRI382640 BT_1583BT_1582BT_1585BT_1586BT_1584
BTHA271848 BTH_I2252BTH_I1300BTH_I1123BTH_I1122BTH_I1125
BSUI470137 BSUIS_A1473BSUIS_A1472BSUIS_A1477BSUIS_A1478BSUIS_A1475
BSUI204722 BR_1422BR_1421BR_1425BR_1426BR_1424
BSP376 BRADO5651BRADO5650BRADO5653BRADO5654BRADO5652
BSP36773 BCEP18194_A5095BCEP18194_A3831BCEP18194_A3650BCEP18194_A3649BCEP18194_A3652
BQUI283165 BQ08780BQ08770BQ08800BQ08810BQ08790
BPSE320373 BURPS668_2169BURPS668_3286BURPS668_3520BURPS668_3521BURPS668_3517
BPSE320372 BURPS1710B_A2535BURPS1710B_A3605BURPS1710B_A3823BURPS1710B_A3824BURPS1710B_A3821
BPSE272560 BPSL1531BPSL2834BPSL3020BPSL3021BPSL3018
BPET94624 BPET1846BPET1550BPET0702BPET0701BPET0703
BPER257313 BP1146BP2506BP3018BP3019BP3017
BPAR257311 BPP3199BPP3492BPP3747BPP3748BPP3746
BOVI236 GBOORF1437GBOORF1436GBOORF1441GBOORF1442GBOORF1438
BMEL359391 BAB1_1441BAB1_1440BAB1_1444BAB1_1445BAB1_1443
BMEL224914 BMEI0587BMEI0588BMEI0584BMEI0586
BMAL320389 BMA10247_1085BMA10247_2214BMA10247_3238BMA10247_3237BMA10247_3240
BMAL320388 BMASAVP1_A1814BMASAVP1_A0492BMASAVP1_A0466BMASAVP1_A0467BMASAVP1_A0464
BMAL243160 BMA_1325BMA_2333BMA_2545BMA_2547BMA_2543
BJAP224911 BLL6594BLL6593BLL6596BLL6597BLL6595
BHEN283166 BH11160BH11150BH11180BH11190BH11170
BCEN331272 BCEN2424_1794BCEN2424_0743BCEN2424_0564BCEN2424_0563BCEN2424_0566
BCEN331271 BCEN_6285BCEN_0259BCEN_0082BCEN_0081BCEN_0084
BCAN483179 BCAN_A1455BCAN_A1454BCAN_A1458BCAN_A1459BCAN_A1457
BBRO257310 BB3599BB3941BB4193BB4194BB4192
BBAC360095 BARBAKC583_0939BARBAKC583_0938BARBAKC583_0941BARBAKC583_0942BARBAKC583_0940
BBAC264462 BD0125BD3173BD3189BD3190BD2484
BAMB398577 BAMMC406_1705BAMMC406_0661BAMMC406_0493BAMMC406_0492BAMMC406_0495
BAMB339670 BAMB_1732BAMB_0637BAMB_0468BAMB_0467BAMB_0470
BABO262698 BRUAB1_1417BRUAB1_1416BRUAB1_1420BRUAB1_1421BRUAB1_1419
ASP76114 EBA4724EBA4808EBA1438EBA1439EBA1436
ASP62977 ACIAD2898ACIAD0354ACIAD3511ACIAD3512ACIAD3510
ASP62928 AZO1017AZO2579AZO0889AZO0888AZO0890
ASP232721 AJS_1829AJS_0903AJS_3665AJS_3666AJS_3663
ASAL382245 ASA_0243ASA_2999ASA_0402ASA_0401ASA_0403
APLE434271 APJL_1140APJL_0026APJL_0024APJL_0023APJL_0025
APLE416269 APL_1121APL_0025APL_0023APL_0022APL_0024
AHYD196024 AHA_4074AHA_2986AHA_3880AHA_3881AHA_3879
AFER243159 AFE_2607AFE_2587AFE_2826AFE_2825AFE_2805
AEHR187272 MLG_2551MLG_1904MLG_2187MLG_2188MLG_2186
ADEH290397 ADEH_3366ADEH_3778ADEH_3777ADEH_0955
ACRY349163 ACRY_0755ACRY_0756ACRY_0069ACRY_0068ACRY_0552
ACAU438753 AZC_4567AZC_4568AZC_4564AZC_4563AZC_4565
ABOR393595 ABO_0475ABO_0310ABO_0603ABO_0602ABO_0604
ABAU360910 BAV1218BAV2723BAV2874BAV2875BAV2873
ABAC204669 ACID345_0073ACID345_0596ACID345_3451ACID345_3452ACID345_0085
AAVE397945 AAVE_3241AAVE_3602AAVE_0826AAVE_0825AAVE_0827


Organism features enriched in list (features available for 252 out of the 269 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 5.670e-71992
Disease:Bubonic_plague 0.006303266
Disease:Dysentery 0.006303266
Disease:None 0.00861561758
Endospores:No 3.352e-1744211
Endospores:Yes 1.461e-11253
GC_Content_Range4:0-40 5.741e-2337213
GC_Content_Range4:40-60 1.296e-6124224
GC_Content_Range4:60-100 2.607e-891145
GC_Content_Range7:0-30 6.328e-8447
GC_Content_Range7:30-40 1.106e-1333166
GC_Content_Range7:50-60 2.243e-1177107
GC_Content_Range7:60-70 1.286e-1090134
Genome_Size_Range5:0-2 8.504e-1429155
Genome_Size_Range5:2-4 0.000396567197
Genome_Size_Range5:4-6 4.091e-17126184
Genome_Size_Range5:6-10 0.00157013047
Genome_Size_Range9:0-1 0.0000340227
Genome_Size_Range9:1-2 2.586e-927128
Genome_Size_Range9:2-3 5.500e-631120
Genome_Size_Range9:4-5 7.927e-86596
Genome_Size_Range9:5-6 5.738e-86188
Genome_Size_Range9:6-8 0.00023772738
Gram_Stain:Gram_Neg 3.926e-60235333
Habitat:Multiple 0.001762792178
Habitat:Specialized 0.00006571053
Motility:No 6.195e-1526151
Motility:Yes 5.131e-8147267
Optimal_temp.:- 0.0028922126257
Optimal_temp.:25-30 8.044e-81919
Optimal_temp.:35-37 0.00001541313
Optimal_temp.:37 0.003159434106
Oxygen_Req:Aerobic 0.0000596101185
Oxygen_Req:Anaerobic 1.531e-1115102
Oxygen_Req:Facultative 0.0004488105201
Pathogenic_in:Animal 0.00887883766
Pathogenic_in:No 0.009178086226
Salinity:Non-halophilic 0.003159434106
Shape:Coccobacillus 0.00008671111
Shape:Coccus 1.249e-81382
Shape:Rod 2.362e-20203347
Shape:Sphere 0.0018651219
Shape:Spiral 0.0000458434
Temp._range:Mesophilic 0.0003070220473
Temp._range:Psychrophilic 0.000485099
Temp._range:Thermophilic 3.245e-8135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 170
Effective number of orgs (counting one per cluster within 468 clusters): 138

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSP64471 ncbi Synechococcus sp. CC93111
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BLON206672 ncbi Bifidobacterium longum NCC27050
BGAR290434 ncbi Borrelia garinii PBi1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  G7352   EG10831   EG10347   EG10339   EG10265   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0231
TWHI203267 TW515
TVOL273116
TTHE300852 TTHA1088
TTHE262724 TT_C0723
TSP28240
TROS309801 TRD_0460
TPET390874
TPEN368408
TMAR243274
TLET416591
TKOD69014
TERY203124 TERY_3318
TACI273075
STRO369723 STROP_3210
STOK273063
SSP64471 GSYN2350
SSP1131 SYNCC9605_2118
SSOL273057
SSAP342451 SSP1235
SMAR399550
SHAE279808 SH1396
SERY405948 SACE_5835
SEPI176280 SE_1200
SEPI176279 SERP1080
SCO SCO2082
SAUR93062 SACOL1564
SAUR93061 SAOUHSC_01615
SAUR426430 NWMN_1425
SAUR418127 SAHV_1507
SAUR367830 SAUSA300_1468
SAUR359787 SAURJH1_1611
SAUR359786 SAURJH9_1578
SAUR282459 SAS1458
SAUR282458 SAR1597
SAUR273036 SAB1392C
SAUR196620 MW1472
SAUR158879 SA1350
SAUR158878 SAV1519
SARE391037 SARE_3436
SACI330779
RSP101510 RHA1_RO01085
RSAL288705 RSAL33209_0813
RALB246199 GRAORF_2454
PTOR263820
PSP117 RB4934
PMOB403833
PMAR74547 PMT1412
PMAR59920 PMN2A_0908
PMAR167555 NATL1_17641
PMAR167546 P9301ORF_1552
PMAR167539 PRO_1418
PMAR146891 A9601_15371
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747 PPA0761
PABY272844
OTSU357244 OTBS_1109
NSP35761 NOCA_3060
NSEN222891 NSE_0923
NPHA348780
NFAR247156
MVAN350058
MTUB419947 MRA_2165
MTUB336982 TBFG_12180
MTHE349307
MTHE187420
MTBRV RV2150C
MTBCDC MT2209
MSYN262723
MSTA339860
MSP189918 MKMS_3315
MSP164757 MJLS_3264
MSP164756 MMCS_3253
MSME246196 MSMEG_4222
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_2167C
MBOV233413 MB2174C
MBAR269797
MAVI243243 MAV_2340
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090
LJOH257314 LJ_1545
LHEL405566 LHV_1410
LGAS324831 LGAS_0756
LDEL390333 LDB1420
LDEL321956 LBUL_1315
LACI272621 LBA1327
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
HAUR316274 HAUR_3503
FSP1855 FRANEAN1_5094
FSP106370 FRANCCI3_1418
FNOD381764
FMAG334413
FALN326424 FRAAL2200
DSP255470 CBDBA283
DSP216389 DEHABAV1_0321
DRAD243230 DR_0630
DGEO319795 DGEO_1634
DETH243164 DET_0342
CTRA471473 CTLON_0790
CTRA471472 CTL0795
CSUL444179
CPNE182082 CPB0678
CPNE138677 CPJ0652
CPNE115713 CPN0652
CPNE115711 CP_0095
CPHY357809 CPHY_2499
CMUR243161 TC_0820
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CGLU196627
CFEL264202 CF0918
CEFF196164 CE2050
CDIP257309 DIP1182
CCAV227941 CCA_00088
CABO218497 CAB088
BXEN266265
BLON206672
BGAR290434 BG0304
AYEL322098
AURANTIMONAS
APER272557
ANAE240017
ALAI441768 ACL_0479
AFUL224325
ABUT367737 ABU_2039


Organism features enriched in list (features available for 158 out of the 170 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.982e-6892
Arrangment:Clusters 6.054e-91617
Disease:Pharyngitis 0.000025588
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 4.461e-71111
Disease:bronchitis_and_pneumonitis 0.000025588
Endospores:No 4.166e-17101211
Endospores:Yes 0.0023796653
GC_Content_Range7:50-60 0.002507218107
Genome_Size_Range5:0-2 5.390e-1072155
Genome_Size_Range5:4-6 4.625e-1119184
Genome_Size_Range9:0-1 1.668e-61927
Genome_Size_Range9:1-2 0.000028353128
Genome_Size_Range9:2-3 0.000888246120
Genome_Size_Range9:3-4 0.00087201077
Genome_Size_Range9:4-5 0.00001081096
Genome_Size_Range9:5-6 0.0000225988
Gram_Stain:Gram_Neg 1.040e-2041333
Gram_Stain:Gram_Pos 0.000024760150
Habitat:Multiple 1.938e-724178
Habitat:Specialized 0.00006392753
Motility:No 2.801e-1173151
Motility:Yes 1.414e-843267
Optimal_temp.:- 1.322e-645257
Optimal_temp.:30-37 6.440e-71518
Optimal_temp.:37 0.008271338106
Optimal_temp.:85 0.005245944
Oxygen_Req:Anaerobic 0.000121743102
Oxygen_Req:Facultative 0.009431344201
Shape:Coccus 0.00394243282
Shape:Irregular_coccus 1.190e-101717
Shape:Rod 2.466e-1159347
Shape:Sphere 1.935e-71619
Shape:Spiral 0.0013351234
Temp._range:Hyperthermophilic 1.377e-92023
Temp._range:Mesophilic 0.0004112114473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 7
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
RAKA293614 ncbi Rickettsia akari Hartford 0.00208294165
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith 0.00208294165
RRIC452659 ncbi Rickettsia rickettsii Iowa 0.00229214245
RCON272944 ncbi Rickettsia conorii Malish 7 0.00248864315
RMAS416276 ncbi Rickettsia massiliae MTU5 0.00279254415
RBEL391896 ncbi Rickettsia bellii OSU 85-389 0.00356594635
RBEL336407 ncbi Rickettsia bellii RML369-C 0.00445564845


Names of the homologs of the genes in the group in each of these orgs
  G7352   EG10831   EG10347   EG10339   EG10265   
RAKA293614 A1C_01315A1C_01310A1C_05145A1C_01820A1C_01850
RRIC392021 A1G_01315A1G_01310A1G_05600A1G_01920A1G_01940
RRIC452659 RRIOWA_0285RRIOWA_0284RRIOWA_1207RRIOWA_0405RRIOWA_0409
RCON272944 RC0230RC0229RC1015RC0335RC0339
RMAS416276 RMA_0243RMA_0242RMA_1048RMA_0343RMA_0347
RBEL391896 A1I_01815A1I_01820A1I_01985A1I_03870A1I_03890
RBEL336407 RBE_1102RBE_1101RBE_1071RBE_0958RBE_0954


Organism features enriched in list (features available for 7 out of the 7 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Rocky_Mountain_Spotted_Fever 1.065e-633
GC_Content_Range4:0-40 0.00081557213
GC_Content_Range7:30-40 0.00013847166
Genome_Size_Range5:0-2 0.00008497155
Genome_Size_Range9:1-2 0.00002167128
Habitat:Host-associated 0.00848706206



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002580.8332
GLYCOCAT-PWY (glycogen degradation I)2462260.7941
PWY-1269 (CMP-KDO biosynthesis I)3252610.7828
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912460.7817
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962470.7735
PWY-5918 (heme biosynthesis I)2722320.7485
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902400.7457
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2252060.7344
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862360.7317
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482620.7292
PWY-5913 (TCA cycle variation IV)3012390.7071
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181980.7058
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951830.6905
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831730.6687
TYRFUMCAT-PWY (tyrosine degradation I)1841710.6503
PWY-4041 (γ-glutamyl cycle)2792200.6486
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911740.6433
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911730.6363
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491480.6356
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2552030.6122
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392400.6092
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761590.5975
PWY-5028 (histidine degradation II)1301280.5731
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982560.5677
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292280.5579
REDCITCYC (TCA cycle variation II)1741520.5552
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262260.5530
KDOSYN-PWY (KDO transfer to lipid IVA I)1801550.5525
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791540.5494
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162590.5461
DAPLYSINESYN-PWY (lysine biosynthesis I)3422300.5362
AST-PWY (arginine degradation II (AST pathway))1201160.5274
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561360.5134
P344-PWY (acrylonitrile degradation)2101630.4958
PWY-5188 (tetrapyrrole biosynthesis I)4392590.4933
PWY0-501 (lipoate biosynthesis and incorporation I)3852400.4920
PWY-5148 (acyl-CoA hydrolysis)2271700.4847
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222520.4838
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96950.4806
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491800.4796
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491800.4796
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)1121040.4696
P601-PWY (D-camphor degradation)95930.4686
PWY-3162 (tryptophan degradation V (side chain pathway))94920.4655
PWY-46 (putrescine biosynthesis III)1381190.4637
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351170.4618
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381180.4558
PWY-5386 (methylglyoxal degradation I)3052020.4558
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742300.4533
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001990.4505
GLUCONSUPER-PWY (D-gluconate degradation)2291650.4444
PWY1-3 (polyhydroxybutyrate biosynthesis)1151020.4372
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))1161020.4322
PWY-5783 (octaprenyl diphosphate biosynthesis)1651300.4315
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891910.4303
GALACTCAT-PWY (D-galactonate degradation)104940.4266
PWY-6087 (4-chlorocatechol degradation)2231580.4172
PWY-5340 (sulfate activation for sulfonation)3852280.4119
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781340.4099
LIPASYN-PWY (phospholipases)2121510.4067
GLUT-REDOX-PWY (glutathione redox reactions II)2461670.4029
PWY-6193 (3-chlorocatechol degradation II (ortho))1941410.4005
PWY-5497 (purine nucleotides degradation IV (anaerobic))1223-.4057
P122-PWY (heterolactic fermentation)1192-.4071



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10831   EG10347   EG10339   EG10265   
G73520.999420.9985590.998850.999246
EG108310.9988130.9988760.999124
EG103470.9999950.999926
EG103390.999906
EG10265



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PAIRWISE BLAST SCORES:

  G7352   EG10831   EG10347   EG10339   EG10265   
G73520.0f0----
EG10831-0.0f0---
EG10347--0.0f0--
EG10339---0.0f0-
EG10265----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10265 EG10339 EG10347 (centered at EG10347)
G7352 (centered at G7352)
EG10831 (centered at EG10831)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7352   EG10831   EG10347   EG10339   EG10265   
287/623414/623416/623410/623342/623
AAEO224324:0:Tyes---0876
AAUR290340:2:Tyes-057--
AAVE397945:0:Tyes23802730102
ABAC204669:0:Tyes05293403340412
ABAU360910:0:Tyes01507166116621660
ABOR393595:0:Tyes1740304303305
ABUT367737:0:Tyes----0
ACAU438753:0:Tyes45102
ACEL351607:0:Tyes-2320--
ACRY349163:8:Tyes68868910484
ADEH290397:0:Tyes2438-285528540
AEHR187272:0:Tyes6430281282280
AFER243159:0:Tyes200238237217
AHYD196024:0:Tyes10090829830828
ALAI441768:0:Tyes-0---
AMAR234826:0:Tyes0-17774-
AMAR329726:9:Tyes-2155217-0
AMET293826:0:Tyes-0361--
AORE350688:0:Tyes-2180--
APHA212042:0:Tyes0-18689-
APLE416269:0:Tyes11023102
APLE434271:0:Tno10893102
ASAL382245:5:Tyes02650156155157
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