CANDIDATE ID: 685

CANDIDATE ID: 685

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9951040e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12362 (menF) (b2265)
   Products of gene:
     - MENF-MONOMER (MenF)
     - MENF-CPLX (isochorismate synthase 2)
       Reactions:
        chorismate  =  isochorismate
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-6374 (PWY-6374)
         PWY-5903 (PWY-5903)
         ENTBACSYN-PWY (enterobactin biosynthesis)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)
         PWY-5901 (2,3-dihydroxybenzoate biosynthesis)
         PWY-6406 (PWY-6406)

- EG11028 (trpE) (b1264)
   Products of gene:
     - ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
     - ANTHRANSYN-CPLX (anthranilate synthase)
       Reactions:
        chorismate + L-glutamine  ->  anthranilate + pyruvate + L-glutamate + H+
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PWY-5958 (PWY-5958)
         TRPSYN-PWY (tryptophan biosynthesis)

- EG11027 (trpD) (b1263)
   Products of gene:
     - ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
       Reactions:
        anthranilate + 5-phospho-alpha-D-ribose 1-diphosphate  ->  N-(5'-phosphoribosyl)-anthranilate + diphosphate
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         TRPSYN-PWY (tryptophan biosynthesis)
     - ANTHRANSYN-CPLX (anthranilate synthase)
       Reactions:
        chorismate + L-glutamine  ->  anthranilate + pyruvate + L-glutamate + H+
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PWY-5958 (PWY-5958)
         TRPSYN-PWY (tryptophan biosynthesis)

- EG10682 (pabA) (b3360)
   Products of gene:
     - PABASYN-COMPII-MONOMER (PabA)
     - PABASYN-CPLX (aminodeoxychorismate synthase)
       Reactions:
        L-glutamine + chorismate  =  4-amino-4-deoxychorismate + L-glutamate
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         FOLSYN-PWY (tetrahydrofolate biosynthesis)
         PWY-6543 (PWY-6543)
     - PABSYNMULTI-CPLX (para-aminobenzoate synthase multi-enzyme complex)

- EG10261 (entC) (b0593)
   Products of gene:
     - ENTC-MONOMER (isochorismate synthase 1)
       Reactions:
        chorismate  =  isochorismate
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-6374 (PWY-6374)
         PWY-5903 (PWY-5903)
         ENTBACSYN-PWY (enterobactin biosynthesis)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)
         PWY-5901 (2,3-dihydroxybenzoate biosynthesis)
         PWY-6406 (PWY-6406)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 246
Effective number of orgs (counting one per cluster within 468 clusters): 181

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
UMET351160 ncbi uncultured methanogenic archaeon RC-I4
TTUR377629 ncbi Teredinibacter turnerae T79015
TTHE300852 ncbi Thermus thermophilus HB84
TTHE262724 ncbi Thermus thermophilus HB274
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP28240 Thermotoga sp.4
TROS309801 ncbi Thermomicrobium roseum DSM 51595
TPET390874 ncbi Thermotoga petrophila RKU-14
TMAR243274 ncbi Thermotoga maritima MSB84
TERY203124 ncbi Trichodesmium erythraeum IMS1015
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-35
SSP84588 ncbi Synechococcus sp. WH 81025
SSP64471 ncbi Synechococcus sp. CC93115
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)5
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSP1148 ncbi Synechocystis sp. PCC 68035
SSP1131 Synechococcus sp. CC96055
SSON300269 ncbi Shigella sonnei Ss0465
SSOL273057 ncbi Sulfolobus solfataricus P24
SSED425104 ncbi Shewanella sediminis HAW-EB35
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SELO269084 ncbi Synechococcus elongatus PCC 63015
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEG203122 ncbi Saccharophagus degradans 2-405
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB5
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99415
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP357808 ncbi Roseiflexus sp. RS-15
RSP101510 ncbi Rhodococcus jostii RHA14
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332094
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMAR74547 ncbi Prochlorococcus marinus MIT 93135
PMAR59920 ncbi Prochlorococcus marinus NATL2A5
PMAR167555 ncbi Prochlorococcus marinus NATL1A5
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13755
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PISL384616 ncbi Pyrobaculum islandicum DSM 41844
PING357804 ncbi Psychromonas ingrahamii 375
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PENT384676 ncbi Pseudomonas entomophila L485
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
NSP103690 ncbi Nostoc sp. PCC 71205
NPHA348780 ncbi Natronomonas pharaonis DSM 21604
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16225
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H4
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MMAR394221 ncbi Maricaulis maris MCS104
MMAR368407 ncbi Methanoculleus marisnigri JR14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLAB410358 ncbi Methanocorpusculum labreanum Z5
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26615
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
MAER449447 ncbi Microcystis aeruginosa NIES-8434
MABS561007 ncbi Mycobacterium abscessus ATCC 199774
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53345
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LMON265669 ncbi Listeria monocytogenes 4b F23655
LMON169963 ncbi Listeria monocytogenes EGD-e5
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82934
LLAC272623 ncbi Lactococcus lactis lactis Il14035
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LINN272626 ncbi Listeria innocua Clip112625
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS14
HSOM228400 ncbi Haemophilus somnus 23364
HNEP81032 Hyphomonas neptunium4
HMUK485914 ncbi Halomicrobium mukohataei DSM 122865
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237795
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DRED349161 ncbi Desulfotomaculum reducens MI-15
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CTEP194439 ncbi Chlorobium tepidum TLS4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CMET456442 ncbi Candidatus Methanoregula boonei 6A85
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CEFF196164 ncbi Corynebacterium efficiens YS-3144
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131294
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
CCHL340177 ncbi Chlorobium chlorochromatii CaD34
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLON206672 ncbi Bifidobacterium longum NCC27054
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB339670 ncbi Burkholderia ambifaria AMMD5
AVAR240292 ncbi Anabaena variabilis ATCC 294135
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
ANAE240017 Actinomyces oris MG14
AMAR329726 ncbi Acaryochloris marina MBIC110175
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAUR290340 ncbi Arthrobacter aurescens TC14
AAEO224324 ncbi Aquifex aeolicus VF55


Names of the homologs of the genes in the group in each of these orgs
  EG12362   EG11028   EG11027   EG10682   EG10261   
ZMOB264203 ZMO0113ZMO0468ZMO0201ZMO0113
YPSE349747 YPSIP31758_1481YPSIP31758_1932YPSIP31758_1934YPSIP31758_3948
YPSE273123 YPTB2561YPTB2130YPTB2128YPTB3732
YPES386656 YPDSF_1938YPDSF_0925YPDSF_0927YPDSF_0097
YPES377628 YPN_2123YPN_1677YPN_1675YPN_3895
YPES360102 YPA_2020YPA_1568YPA_1566YPA_3300
YPES349746 YPANGOLA_A1786YPANGOLA_A2312YPANGOLA_A2314YPANGOLA_A3705
YPES214092 YPO2528YPO2208YPO2206YPO0169
YENT393305 YE1373YE2209YE2211YE3958YE1373
XORY360094 XOOORF_0825XOOORF_0825XOOORF_0642XOOORF_0639
XORY342109 XOO3824XOO3824XOO3936XOO3938
XORY291331 XOO4049XOO4049XOO4161XOO4163
XFAS405440 XFASM12_0179XFASM12_0179XFASM12_0181XFASM12_0180
XFAS183190 PD_0170PD_0170PD_0172PD_0171
XFAS160492 XF0210XF0210XF0212XF0211
XCAM487884 XCC-B100_0494XCC-B100_0494XCC-B100_0499XCC-B100_0497
XCAM316273 XCAORF_4048XCAORF_4048XCAORF_4043XCAORF_4045
XCAM314565 XC_0473XC_0473XC_0483XC_0481
XCAM190485 XCC0459XCC0459XCC0469XCC0467
VVUL216895 VV1_3173VV1_3064VV1_3066VV1_1311VV2_0835
VVUL196600 VV1115VV1221VV1219VV3055VVA1300
VPAR223926 VP0928VP1956VP1958VP2798VP0928
VFIS312309 VF1672VF1033VF1032VF2285VF1672
VCHO345073 VC0395_A1562VC0395_A0796VC0395_A0794VC0395_A2196VC0395_A0302
VCHO VC1976VC1174VC1172VC2619VC0773
UMET351160 RCIX797RCIX797RCIX796RCIX796
TTUR377629 TERTU_2729TERTU_3137TERTU_3128TERTU_3129TERTU_4059
TTHE300852 TTHA1844TTHA1844TTHA1842TTHA1843
TTHE262724 TT_C1493TT_C1493TT_C1491TT_C1492
TTEN273068 TTE1583TTE1583TTE1581TTE1582TTE1583
TSP28240 TRQ2_0806TRQ2_0806TRQ2_0807TRQ2_0807
TROS309801 TRD_A0262TRD_0102TRD_0104TRD_0103TRD_A0262
TPET390874 TPET_0783TPET_0783TPET_0784TPET_0784
TMAR243274 TM_0142TM_0142TM_0141TM_0141
TERY203124 TERY_4072TERY_3792TERY_2308TERY_5029TERY_4072
TELO197221 TLL1213TLL1672TLR1471TLL1213
TDEN292415 TBD_2228TBD_2223TBD_2224TBD_2228
TCRU317025 TCR_0266TCR_0268TCR_0267TCR_0266
STYP99287 STM2310STM1723STM1724STM3469STM0595
STHE292459 STH1407STH1407STH1409STH1408STH1407
SSP94122 SHEWANA3_4071SHEWANA3_1520SHEWANA3_1518SHEWANA3_0606SHEWANA3_4071
SSP84588 SYNW2308OR0956SYNW2045OR2765SYNW1025OR0047SYNW2315OR0962SYNW2308OR0956
SSP64471 GSYN2802GSYN0484GSYN1754GSYN2810GSYN2802
SSP321332 CYB_2299CYB_0535CYB_0050CYB_2417CYB_2299
SSP321327 CYA_2455CYA_2136CYA_0630CYA_2654CYA_2455
SSP1148 SLR0817SLR0738SLR1867SLR0055SLR0817
SSP1131 SYNCC9605_2439SYNCC9605_0398SYNCC9605_1151SYNCC9605_2446SYNCC9605_2439
SSON300269 SSO_2326SSO_1879SSO_1880SSO_3491SSO_0544
SSOL273057 SSO0893SSO0893SSO0894SSO0893
SSED425104 SSED_0130SSED_1686SSED_1684SSED_0806SSED_0130
SRUB309807 SRU_1350SRU_1662SRU_1665SRU_1350
SPRO399741 SPRO_3284SPRO_2667SPRO_2669SPRO_4583SPRO_3421
SPEA398579 SPEA_4089SPEA_1590SPEA_1588SPEA_3519SPEA_4089
SONE211586 SO_4713SO_3019SO_3021SO_0613SO_4713
SLOI323850 SHEW_3677SHEW_2251SHEW_2253SHEW_0575SHEW_3677
SHIGELLA MENFTRPETRPDPABAMENF
SHAL458817 SHAL_0155SHAL_1658SHAL_1656SHAL_3613SHAL_0155
SFUM335543 SFUM_1776SFUM_1776SFUM_1774SFUM_1775
SFLE373384 SFV_2336SFV_1278SFV_1277SFV_3366SFV_2336
SFLE198214 AAN43858.1AAN42880.1AAN42879.1AAN44842.1AAN43858.1
SERY405948 SACE_6911SACE_5753SACE_0040SACE_3854
SENT454169 SEHA_C2550SEHA_C1913SEHA_C1914SEHA_C3774SEHA_C0707
SENT321314 SCH_2310SCH_1719SCH_1720SCH_3403SCH_0626
SENT295319 SPA0553SPA1154SPA1153SPA3335SPA2139
SENT220341 STY2541STY1328STY1327STY4327STY0639
SENT209261 T0553T1635T1636T4036T2273
SELO269084 SYC1908_DSYC0542_CSYC1969_DSYC1115_DSYC1908_D
SDYS300267 SDY_2461SDY_1332SDY_1331SDY_3522SDY_0524
SDEG203122 SDE_3400SDE_0747SDE_0753SDE_0752SDE_3400
SCO SCO3214SCO2043SCO3212SCO3851SCO3214
SBOY300268 SBO_2302SBO_1802SBO_1803SBO_3342SBO_0454
SBAL402882 SHEW185_4311SHEW185_2722SHEW185_2724SHEW185_3758SHEW185_4311
SBAL399599 SBAL195_4451SBAL195_2801SBAL195_2803SBAL195_3884SBAL195_4451
SACI56780 SYN_02398SYN_01947SYN_01945SYN_01946SYN_02398
RXYL266117 RXYL_2897RXYL_2115RXYL_2095RXYL_2096RXYL_2897
RSPH349102 RSPH17025_3101RSPH17025_3101RSPH17025_3098RSPH17025_3099RSPH17025_0362
RSPH349101 RSPH17029_0714RSPH17029_0714RSPH17029_0711RSPH17029_0712RSPH17029_2474
RSPH272943 RSP_2004RSP_2004RSP_2001RSP_2002RSP_0817
RSP357808 ROSERS_0026ROSERS_1455ROSERS_1452ROSERS_1454ROSERS_0026
RSP101510 RHA1_RO05194RHA1_RO01016RHA1_RO03695RHA1_RO05194
RSAL288705 RSAL33209_2639RSAL33209_2337RSAL33209_2894RSAL33209_2639
RRUB269796 RRU_A1891RRU_A1891RRU_A1896RRU_A1895
RCAS383372 RCAS_4216RCAS_2156RCAS_2153RCAS_2155RCAS_4216
PTHE370438 PTH_1628PTH_1628PTH_1626PTH_1627
PSYR223283 PSPTO_2595PSPTO_0568PSPTO_0592PSPTO_2595
PSYR205918 PSYR_4609PSYR_4580PSYR_4581PSYR_4609
PSTU379731 PST_0744PST_0746PST_0745PST_0744
PPUT76869 PPUTGB1_0448PPUTGB1_0451PPUTGB1_0450PPUTGB1_0448
PPUT351746 PPUT_0451PPUT_0454PPUT_0453PPUT_0451
PPUT160488 PP_0417PP_0421PP_0420PP_0417
PPRO298386 PBPRA2625PBPRA2486PBPRA2488PBPRA0288PBPRB1824
PMUL272843 PM0053PM0584PM0581PM0053
PMAR74547 PMT2060PMT1711PMT0654PMT2067PMT2060
PMAR59920 PMN2A_1545PMN2A_1149PMN2A_0258PMN2A_1552PMN2A_1545
PMAR167555 NATL1_02521NATL1_20231NATL1_09271NATL1_02601NATL1_02521
PMAR167539 PRO_0202PRO_1732PRO_0744PRO_0209PRO_0202
PLUT319225 PLUT_0332PLUT_1468PLUT_0356PLUT_0332
PLUM243265 PLU3074PLU2462PLU2464PLU0393PLU3074
PISL384616 PISL_1914PISL_1915PISL_1913PISL_1914
PING357804 PING_0355PING_1060PING_1058PING_3615PING_0355
PFLU220664 PFL_3488PFL_5629PFL_5623PFL_3488
PENT384676 PSEEN2504PSEEN0444PSEEN0448PSEEN0447PSEEN2504
PCAR338963 PCAR_0730PCAR_0730PCAR_0732PCAR_0731PCAR_0730
PAER208964 PA4231PA1001PA0650PA0649PA4231
PAER208963 PA14_09210PA14_51360PA14_08350PA14_08340PA14_09210
OIHE221109 OB2326OB0527OB0525OB0701OB0955
NSP103690 ALL0032ALL0328ALR1153ALL0269ALL0032
NPHA348780 NP2724ANP3342ANP3344ANP2724A
NOCE323261 NOC_2494NOC_2494NOC_2496NOC_2495NOC_2494
NEUT335283 NEUT_2098NEUT_0134NEUT_0135NEUT_2098
NEUR228410 NE2150NE0013NE0014NE2150
NARO279238 SARO_2021SARO_2021SARO_2023SARO_2022
MXAN246197 MXAN_3527MXAN_6072MXAN_6062MXAN_1589MXAN_3646
MTHE264732 MOTH_1342MOTH_1342MOTH_1340MOTH_1341MOTH_1342
MTHE187420 MTH1655MTH1655MTH1661MTH1656
MSUC221988 MS1795MS1149MS1151MS1795
MSP409 M446_5398M446_5395M446_0052M446_0053
MSP400668 MMWYL1_1621MMWYL1_1062MMWYL1_1061MMWYL1_1621
MMAR394221 MMAR10_1403MMAR10_1400MMAR10_1401MMAR10_0411
MMAR368407 MEMAR_0071MEMAR_0071MEMAR_0073MEMAR_0072
MMAG342108 AMB1813AMB1813AMB2862AMB2861
MLAB410358 MLAB_1399MLAB_1399MLAB_1397MLAB_1398MLAB_1399
MJAN243232 MJ_1075MJ_1075MJ_0234MJ_0238MJ_1075
MGIL350054 MFLV_4680MFLV_3602MFLV_0813MFLV_4680
MFLA265072 MFLA_2471MFLA_2467MFLA_2468MFLA_2471
MCAP243233 MCA_2584MCA_2584MCA_2586MCA_2585MCA_2584
MAQU351348 MAQU_3517MAQU_3517MAQU_3519MAQU_3518MAQU_3517
MAER449447 MAE_01970MAE_23290MAE_23330MAE_01970
MABS561007 MAB_3535MAB_2647CMAB_0032MAB_3535
LWEL386043 LWE1694LWE1649LWE1647LWE2697LWE1694
LSPH444177 BSPH_4278BSPH_3628BSPH_0095BSPH_4278
LMON265669 LMOF2365_1700LMOF2365_1655LMOF2365_1653LMOF2365_2736LMOF2365_1700
LMON169963 LMO1676LMO1633LMO1631LMO2749LMO1676
LMES203120 LEUM_0751LEUM_1171LEUM_1175LEUM_0751
LLAC272623 L0168L0054L0052L0178L0168
LLAC272622 LACR_0774LACR_1560LACR_1558LACR_0774
LINN272626 LIN1784LIN1674LIN1672LIN2892LIN1784
KPNE272620 GKPORF_B1967GKPORF_B0277GKPORF_B0276GKPORF_B3086GKPORF_B5030
JSP375286 MMA_0235MMA_0235MMA_0233MMA_0234
JSP290400 JANN_1882JANN_1882JANN_1879JANN_1880
HSOM228400 HSM_0969HSM_1315HSM_1313HSM_0969
HNEP81032 HNE_1790HNE_1788HNE_1789HNE_2369
HMUK485914 HMUK_0041HMUK_1769HMUK_1771HMUK_1768HMUK_0041
HMOD498761 HM1_1916HM1_1916HM1_1918HM1_1917HM1_1916
HMAR272569 RRNAC0837RRNAC1520PNG7325RRNAC0837
HINF71421 HI_0285HI_1387HI_1389HI_0285
HINF374930 CGSHIEE_01635CGSHIEE_04490CGSHIEE_04510CGSHIEE_01635
HINF281310 NTHI0393NTHI1768NTHI1764NTHI0393
HHAL349124 HHAL_1126HHAL_2082HHAL_2080HHAL_2081HHAL_1126
HCHE349521 HCH_06563HCH_06125HCH_06127HCH_06126HCH_06563
HAUR316274 HAUR_1802HAUR_2962HAUR_2688HAUR_0597HAUR_1802
GVIO251221 GLR1717GLR1717GLL2795GLR0883
GURA351605 GURA_1731GURA_1731GURA_1732GURA_1731
GTHE420246 GTNG_2774GTNG_2138GTNG_2137GTNG_0067GTNG_2774
GSUL243231 GSU_2383GSU_2383GSU_2381GSU_2382GSU_2383
GMET269799 GMET_2497GMET_2497GMET_2496GMET_2497
GKAU235909 GK2876GK2204GK2203GK0067GK2876
GBET391165 GBCGDNIH1_0824GBCGDNIH1_0824GBCGDNIH1_0820GBCGDNIH1_0821GBCGDNIH1_0824
ESP42895 ENT638_2815ENT638_2204ENT638_2205ENT638_3787ENT638_1125
ELIT314225 ELI_06485ELI_06485ELI_06505ELI_06485
EFER585054 EFER_0903EFER_1692EFER_1693EFER_3333EFER_2501
ECOO157 MENFTRPE_1TRPDPABAENTC
ECOL83334 ECS3153ECS1836ECS1835ECS4211ECS0632
ECOL585397 ECED1_2733ECED1_1471ECED1_1470ECED1_4024ECED1_0590
ECOL585057 ECIAI39_2413ECIAI39_1601ECIAI39_1600ECIAI39_3844ECIAI39_0570
ECOL585056 ECUMN_2608ECUMN_1563ECUMN_1562ECUMN_3823ECUMN_0687
ECOL585055 EC55989_2513EC55989_1422EC55989_1421EC55989_3766EC55989_0585
ECOL585035 ECS88_2416ECS88_1399ECS88_1398ECS88_3751ECS88_0632
ECOL585034 ECIAI1_2343ECIAI1_1284ECIAI1_1283ECIAI1_3499ECIAI1_0577
ECOL481805 ECOLC_1383ECOLC_2363ECOLC_2364ECOLC_0352ECOLC_3051
ECOL469008 ECBD_1393ECBD_2358ECBD_2359ECBD_0388ECBD_3061
ECOL439855 ECSMS35_2420ECSMS35_1868ECSMS35_1869ECSMS35_3642ECSMS35_0613
ECOL413997 ECB_02192ECB_01238ECB_01237ECB_03211ECB_00560
ECOL409438 ECSE_2525ECSE_1313ECSE_1312ECSE_3622ECSE_0660
ECOL405955 APECO1_4296APECO1_425APECO1_424APECO1_3095APECO1_1456
ECOL364106 UTI89_C2549UTI89_C1533UTI89_C1532UTI89_C3863UTI89_C0595
ECOL362663 ECP_2309ECP_1312ECP_1311ECP_3451ECP_0625
ECOL331111 ECE24377A_2562ECE24377A_1463ECE24377A_1462ECE24377A_3830ECE24377A_0613
ECOL316407 ECK2259:JW2260:B2265ECK1258:JW1256:B1264ECK1257:JW1255:B1263ECK3348:JW3323:B3360ECK0586:JW0585:B0593
ECOL199310 C2809C1730C1729C4135C0680
ECAR218491 ECA1210ECA2296ECA2298ECA4066ECA0477
DRED349161 DRED_0248DRED_0248DRED_0250DRED_0249DRED_0248
DPSY177439 DP1619DP1619DP1621DP1620DP1619
DOLE96561 DOLE_1569DOLE_1569DOLE_1567DOLE_1568
DHAF138119 DSY0517DSY3202DSY3199DSY3275DSY0517
DGEO319795 DGEO_0983DGEO_0983DGEO_0986DGEO_0985
DARO159087 DARO_2823DARO_3481DARO_3476DARO_3477DARO_3481
CVIO243365 CV_1485CV_2179CV_2173CV_2175CV_1485
CTEP194439 CT_1838CT_1448CT_1565CT_1838
CSAL290398 CSAL_2323CSAL_2323CSAL_2320CSAL_2321CSAL_2323
CMIC31964 CMS3013CMS2013CMS0016CMS3013
CMET456442 MBOO_0228MBOO_0228MBOO_0226MBOO_0227MBOO_0228
CHYD246194 CHY_1587CHY_1587CHY_1585CHY_1586CHY_1587
CGLU196627 CG1462CG3359CG3361CG1462
CEFF196164 CE1388CE2868CE2870CE1388
CDIP257309 DIP1114DIP2352DIP2354DIP1114
CDES477974 DAUD_1191DAUD_1191DAUD_1189DAUD_1190DAUD_1191
CCHL340177 CAG_1701CAG_0493CAG_0298CAG_1701
BWEI315730 BCERKBAB4_4698BCERKBAB4_1144BCERKBAB4_1146BCERKBAB4_0065BCERKBAB4_2176
BTHU412694 BALH_2108BALH_1095BALH_1097BALH_0068BALH_2108
BTHU281309 BT9727_2144BT9727_0064BT9727_1138BT9727_0065BT9727_2144
BTHA271848 BTH_II1833BTH_I2909BTH_I2911BTH_I2910BTH_II1833
BSUB BSU30830BSU22680BSU00750BSU31990
BSP36773 BCEP18194_B0667BCEP18194_A3621BCEP18194_A3619BCEP18194_A3620BCEP18194_B0667
BPUM315750 BPUM_2719BPUM_1999BPUM_1998BPUM_0059BPUM_2719
BPSE320373 BURPS668_A0871BURPS668_3556BURPS668_3558BURPS668_3557BURPS668_A0871
BPSE320372 BURPS1710B_B2506BURPS1710B_A3858BURPS1710B_A3860BURPS1710B_A3859BURPS1710B_B2506
BPSE272560 BPSS0581BPSL3050BPSL3052BPSL3051BPSS0581
BPET94624 BPET0320BPET0318BPET0319BPET0872
BMAL320389 BMA10247_A1910BMA10247_A1910BMA10247_A1912BMA10247_A1911
BMAL320388 BMASAVP1_0644BMASAVP1_0644BMASAVP1_0646BMASAVP1_0645
BMAL243160 BMA_A0533BMA_A0533BMA_A0531BMA_A0532
BLON206672 BL0687BL0687BL0590BL0687
BLIC279010 BL02409BL02775BL00859BL04021
BCLA66692 ABC1895ABC1895ABC1896ABC0111ABC1895
BCER572264 BCA_2436BCA_1277BCA_1279BCA_0082BCA_2436
BCER405917 BCE_5016BCE_1356BCE_1358BCE_0068BCE_2399
BCER315749 BCER98_3494BCER98_0064BCER98_0065BCER98_1755
BCER288681 BCE33L2128BCE33L0064BCE33L1132BCE33L0065BCE33L2128
BCER226900 BC_2303BC_1232BC_1234BC_0077BC_2303
BCEN331272 BCEN2424_5003BCEN2424_0534BCEN2424_0532BCEN2424_0533BCEN2424_5003
BCEN331271 BCEN_3364BCEN_2571BCEN_2573BCEN_2572BCEN_3364
BANT592021 BAA_2427BAA_1324BAA_1326BAA_0082BAA_2427
BANT568206 BAMEG_2231BAMEG_3342BAMEG_3340BAMEG_0082BAMEG_2231
BANT261594 GBAA2369GBAA1248GBAA1250GBAA0069GBAA2369
BANT260799 BAS2205BAS0068BAS1158BAS0069BAS2205
BAMY326423 RBAM_027810RBAM_020840RBAM_000860RBAM_029040
BAMB339670 BAMB_1690BAMB_0439BAMB_0437BAMB_0438BAMB_1690
AVAR240292 AVA_2632AVA_4721AVA_4408AVA_2780AVA_2632
ASP76114 EBA4177EBA4200EBA4199EBA4177
ASP62977 ACIAD2776ACIAD0297ACIAD2462ACIAD2461ACIAD2776
ASP62928 AZO3325AZO3325AZO3323AZO3324AZO3325
ASP1667 ARTH_3133ARTH_1684ARTH_0019ARTH_3133
ASAL382245 ASA_3738ASA_1407ASA_1405ASA_1133ASA_1838
APLE434271 APJL_1060APJL_1183APJL_1185APJL_1060
APLE416269 APL_1042APL_1163APL_1165APL_1042
ANAE240017 ANA_1627ANA_0527ANA_0525ANA_1627
AMAR329726 AM1_A0125AM1_5143AM1_2932AM1_1430AM1_1109
AHYD196024 AHA_0532AHA_2923AHA_2925AHA_3181AHA_2479
AFER243159 AFE_3088AFE_3088AFE_3090AFE_3089AFE_3088
AEHR187272 MLG_2250MLG_2248MLG_2249MLG_2250
ADEH290397 ADEH_4052ADEH_4052ADEH_4054ADEH_4053
ABOR393595 ABO_2027ABO_2025ABO_2026ABO_2027
ABAC204669 ACID345_4120ACID345_4120ACID345_3885ACID345_4125ACID345_4120
AAUR290340 AAUR_3103AAUR_1835AAUR_0027AAUR_3103
AAEO224324 AQ_582AQ_582AQ_196AQ_549AQ_582


Organism features enriched in list (features available for 233 out of the 246 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Dysentery 0.003918866
Disease:Gastroenteritis 0.00104871113
Endospores:No 5.283e-757211
GC_Content_Range4:0-40 3.361e-2232213
GC_Content_Range4:40-60 1.058e-13132224
GC_Content_Range4:60-100 0.007669969145
GC_Content_Range7:30-40 2.209e-1132166
GC_Content_Range7:50-60 4.660e-1376107
GC_Content_Range7:60-70 0.008986064134
Genome_Size_Range5:0-2 8.211e-2413155
Genome_Size_Range5:4-6 1.024e-14116184
Genome_Size_Range9:1-2 7.329e-1713128
Genome_Size_Range9:4-5 0.00003365696
Genome_Size_Range9:5-6 4.594e-96088
Gram_Stain:Gram_Neg 0.0003607152333
Gram_Stain:Gram_Pos 0.001954446150
Habitat:Aquatic 0.00066105091
Habitat:Host-associated 1.145e-1047206
Habitat:Terrestrial 0.00006212331
Motility:No 5.210e-638151
Motility:Yes 1.038e-9142267
Optimal_temp.:37 0.000542028106
Oxygen_Req:Anaerobic 0.002736829102
Oxygen_Req:Facultative 0.0000109104201
Pathogenic_in:Human 0.000236866213
Pathogenic_in:No 0.0089400102226
Salinity:Non-halophilic 0.006494532106
Shape:Coccus 4.353e-61582
Shape:Irregular_coccus 0.0095762217
Shape:Rod 4.192e-11176347
Shape:Spiral 0.0001925434



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 172
Effective number of orgs (counting one per cluster within 468 clusters): 138

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PAST100379 Onion yellows phytoplasma0
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NHAM323097 ncbi Nitrobacter hamburgensis X141
MSYN262723 ncbi Mycoplasma synoviae 530
MSP266779 ncbi Chelativorans sp. BNC11
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08030
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL351581 Francisella tularensis holarctica FSC2001
FRANT ncbi Francisella tularensis tularensis SCHU S41
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CPER195102 ncbi Clostridium perfringens 131
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ195099 ncbi Campylobacter jejuni RM12211
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIF272563 ncbi Clostridium difficile 6301
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP376 Bradyrhizobium sp.1
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis1
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola1
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  EG12362   EG11028   EG11027   EG10682   EG10261   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496 TW0057
TWHI203267 TW052
TVOL273116
TPEN368408
TPAL243276
TLET416591
TDEN243275
TACI273075
SWOL335541
STHE322159 STER_1554
STHE299768 STR1593
STHE264199 STU1593
SSUI391296
SSUI391295
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SMEL266834 SMC00235
SMED366394 SMED_1408
SMAR399550
SAGA211110
SAGA208435
SAGA205921
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_2797
RPAL316057 RPD_2828
RPAL316056 RPC_2467
RPAL316055 RPE_2591
RPAL258594 RPA2890
RMAS416276
RLEG216596 RL2493
RFEL315456
RETL347834 RHE_CH02174
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PPEN278197
PMAR167546 P9301ORF_0924
PMAR167542 P9515ORF_1082
PINT246198 PIN_A1835
PHOR70601
PGIN242619 PG_1525
PAST100379
OTSU357244
OCAR504832 OCAR_6304
OANT439375 OANT_2049
NWIN323098 NWI_1837
NSEN222891
NHAM323097 NHAM_1734
MSYN262723
MSP266779 MESO_1638
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158 MMARC6_1653
MMAR426368
MMAR402880 MMARC5_0588
MMAR267377 MMP1006
MLOT266835 MLR0614
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MART243272
MAEO419665 MAEO_1117
LSAK314315
LREU557436
LPLA220668 LP_1654
LJOH257314
LINT363253
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_0078
LBRE387344
LBIF456481 LEPBI_I0029
LBIF355278 LBF_0031
LACI272621
HBUT415426
GOXY290633 GOX2286
GFOR411154
FTUL393115 FTF1802C
FTUL351581 FTL_1966
FRANT TRPE
FNUC190304
FNOD381764
FMAG334413 FMG_1052
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DNOD246195 DNO_1127
CTRA471473
CTRA471472
CTET212717
CSUL444179
CPRO264201 PC0367
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_1093
CPER195102 CPE1016
CNOV386415 NT01CX_0380
CMUR243161
CMAQ397948 CMAQ_1043
CKOR374847
CJEJ195099 CJE_0395
CHUT269798 CHU_1758
CHOM360107
CFEL264202
CDIF272563 CD1445
CCAV227941
CBUR360115
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CABO218497
BXEN266265
BTUR314724
BTRI382640
BSP376 BRADO4109
BQUI283165
BOVI236 GBOORF1141
BHER314723
BHEN283166
BGAR290434
BCIC186490 BCI_0549
BCAN483179 BCAN_A1159
BBUR224326
BBAC360095
BBAC264462 BD3485
BAPH372461
BAPH198804 BUSG269
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
AORE350688
AMAR234826
ALAI441768
AFUL224325 AF_1603
ABUT367737 ABU_2004


Organism features enriched in list (features available for 160 out of the 172 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00031073992
Arrangment:Pairs 0.006386721112
Disease:Botulism 0.001487055
Disease:None 0.0051366858
Disease:Pharyngitis 0.000028388
Disease:Wide_range_of_infections 5.147e-71111
Disease:bronchitis_and_pneumonitis 0.000028388
Endospores:No 0.001170373211
GC_Content_Range4:0-40 4.981e-22109213
GC_Content_Range4:40-60 1.226e-735224
GC_Content_Range4:60-100 4.091e-816145
GC_Content_Range7:0-30 7.088e-184047
GC_Content_Range7:30-40 1.190e-669166
GC_Content_Range7:50-60 4.266e-106107
GC_Content_Range7:60-70 8.030e-716134
Genome_Size_Range5:0-2 1.302e-34103155
Genome_Size_Range5:2-4 0.000246237197
Genome_Size_Range5:4-6 4.125e-1514184
Genome_Size_Range5:6-10 0.0073353647
Genome_Size_Range9:0-1 2.038e-102327
Genome_Size_Range9:1-2 7.291e-2280128
Genome_Size_Range9:2-3 0.006466623120
Genome_Size_Range9:4-5 2.013e-6996
Genome_Size_Range9:5-6 2.841e-8588
Habitat:Aquatic 0.00067371391
Habitat:Host-associated 5.221e-782206
Motility:Yes 0.000110954267
Optimal_temp.:37 6.031e-648106
Oxygen_Req:Aerobic 0.002957838185
Pathogenic_in:Human 0.000516275213
Pathogenic_in:No 0.005443950226
Pathogenic_in:Swine 0.001487055
Salinity:Non-halophilic 0.003410340106
Shape:Rod 0.000713679347
Shape:Sphere 2.731e-61519



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 7
Effective number of orgs (counting one per cluster within 468 clusters): 6

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MLAB410358 ncbi Methanocorpusculum labreanum Z 0.00105003635
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 2661 0.00117163715
CMET456442 ncbi Candidatus Methanoregula boonei 6A8 0.00196014115
PMAR59920 ncbi Prochlorococcus marinus NATL2A 0.00764795395
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP1375 0.00823485475
PMAR167555 ncbi Prochlorococcus marinus NATL1A 0.00846395505
HMUK485914 ncbi Halomicrobium mukohataei DSM 12286 0.00901855575


Names of the homologs of the genes in the group in each of these orgs
  EG12362   EG11028   EG11027   EG10682   EG10261   
MLAB410358 MLAB_1399MLAB_1399MLAB_1397MLAB_1398MLAB_1399
MJAN243232 MJ_1075MJ_1075MJ_0234MJ_0238MJ_1075
CMET456442 MBOO_0228MBOO_0228MBOO_0226MBOO_0227MBOO_0228
PMAR59920 PMN2A_1545PMN2A_1149PMN2A_0258PMN2A_1552PMN2A_1545
PMAR167539 PRO_0202PRO_1732PRO_0744PRO_0209PRO_0202
PMAR167555 NATL1_02521NATL1_20231NATL1_09271NATL1_02601NATL1_02521
HMUK485914 HMUK_0041HMUK_1769HMUK_1771HMUK_1768HMUK_0041


Organism features enriched in list (features available for 7 out of the 7 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Genome_Size_Range9:1-2 0.00623775128
Habitat:Aquatic 0.0012822591
Shape:Oval 0.001206125



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-6406 (salicylate biosynthesis I)1881410.4776
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652060.4125



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11028   EG11027   EG10682   EG10261   
EG123620.999490.9993080.9993840.999924
EG110280.9999430.9997980.999174
EG110270.9998560.999154
EG106820.999073
EG10261



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PAIRWISE BLAST SCORES:

  EG12362   EG11028   EG11027   EG10682   EG10261   
EG123620.0f0---2.9e-28
EG11028-0.0f0---
EG11027--0.0f0--
EG10682---0.0f0-
EG102613.2e-29---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis) (degree of match pw to cand: 0.095, degree of match cand to pw: 0.400, average score: 0.694)
  Genes in pathway or complex:
             0.6954 0.4141 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.4754 0.1341 EG10078 (aroF) AROF-MONOMER (AroF)
             0.7993 0.5349 EG10080 (aroH) AROH-MONOMER (AroH)
             0.6711 0.4234 EG10079 (aroG) AROG-MONOMER (AroG)
             0.7478 0.4368 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.7013 0.4072 EG10076 (aroD) AROD-MONOMER (AroD)
             0.7907 0.4753 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.6538 0.1710 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.6986 0.4014 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.7603 0.0614 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.5048 0.1114 EG10075 (aroC) AROC-MONOMER (AroC)
             0.9979 0.9959 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.9979 0.9963 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
   *in cand* 0.9997 0.9992 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
   *in cand* 0.9997 0.9992 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.9994 0.9985 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.3344 0.0592 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.6058 0.1442 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.4456 0.1543 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.2790 0.0265 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.1991 0.0498 EG11040 (tyrB) TYRB-MONOMER (TyrB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9991 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
   *in cand* 0.9996 0.9991 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
   *in cand* 0.9996 0.9993 EG12362 (menF) MENF-MONOMER (MenF)

- ALL-CHORISMATE-PWY (superpathway of chorismate) (degree of match pw to cand: 0.088, degree of match cand to pw: 1.000, average score: 0.580)
  Genes in pathway or complex:
             0.7070 0.2243 EG10799 (purN) GART-MONOMER (phosphoribosylglycinamide formyltransferase 1)
             0.7524 0.2747 EG11375 (folE) GTP-CYCLOHYDRO-I-MONOMER (GTP cyclohydrolase I monomer)
             0.6791 0.0906 EG11138 (nudB) H2NEOPTERINP3PYROPHOSPHOHYDRO-MONOMER (dihydroneopterin triphosphate pyrophosphohydrolase)
             0.9140 0.7469 EG11673 (folB) H2NEOPTERINALDOL-MONOMER (FolB)
             0.7087 0.4860 EG11374 (folK) H2PTERIDINEPYROPHOSPHOKIN-MONOMER (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)
             0.6315 0.4107 G6862 (folM) G6862-MONOMER (dihydromonapterin reductase / dihydrofolate reductase)
             0.5622 0.2938 EG10326 (folA) DIHYDROFOLATEREDUCT-MONOMER (dihydrofolate reductase)
             0.6109 0.1731 EG10327 (folC) FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
             0.3738 0.0001 EG10328 (folD) FOLD-MONOMER (FolD)
   *in cand* 0.9996 0.9991 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
             0.9991 0.9981 EG10683 (pabB) PABASYN-COMPI-MONOMER (PabB)
             0.4664 0.1578 EG50011 (folP) H2PTEROATESYNTH-MONOMER (FolP)
             0.7416 0.5977 EG11493 (pabC) ADCLY-MONOMER (pabC)
             0.4955 0.0440 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
             0.6406 0.4853 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.7487 0.2309 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.3057 0.0784 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
             0.4411 0.0006 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
             0.4016 0.0017 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
             0.5183 0.1011 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.8546 0.4067 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
             0.1991 0.0498 EG11040 (tyrB) TYRB-MONOMER (TyrB)
             0.2790 0.0265 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.4456 0.1543 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.6058 0.1442 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.3344 0.0592 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.9994 0.9985 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
   *in cand* 0.9997 0.9992 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
   *in cand* 0.9997 0.9992 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.9979 0.9963 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.9979 0.9959 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.5048 0.1114 EG10075 (aroC) AROC-MONOMER (AroC)
             0.7603 0.0614 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.6986 0.4014 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.6538 0.1710 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.7907 0.4753 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.7013 0.4072 EG10076 (aroD) AROD-MONOMER (AroD)
             0.7478 0.4368 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.6711 0.4234 EG10079 (aroG) AROG-MONOMER (AroG)
             0.7993 0.5349 EG10080 (aroH) AROH-MONOMER (AroH)
             0.4754 0.1341 EG10078 (aroF) AROF-MONOMER (AroF)
             0.6954 0.4141 EG11234 (ydiB) EG11234-MONOMER (YdiB)
   *in cand* 0.9995 0.9991 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
             0.6521 0.2224 EG10259 (entA) ENTA-MONOMER (EntA)
             0.6386 0.1709 EG10263 (entE) ENTE-MONOMER (EntE)
             0.6116 0.1507 EG10264 (entF) ENTF-PANT (aryl carrier protein / serine activating enzyme)
             0.5303 0.1437 EG10262 (entD) ENTD-MONOMER (phosphopantetheinyl transferase)
             0.7573 0.4066 EG10260 (entB) ENTB-MONOMER (EntB)
             0.3510 0.1053 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
             0.7646 0.5327 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.5798 0.1089 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
             0.6567 0.1764 EG10579 (menD) MEND-MONOMER (MenD)
   *in cand* 0.9996 0.9993 EG12362 (menF) MENF-MONOMER (MenF)
             0.6620 0.2186 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
             0.7705 0.4632 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.7031 0.2642 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
             0.7596 0.2768 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
  All candidate genes found in this pathway
   This pathway has holes

- ANTHRANSYN-CPLX (anthranilate synthase) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.400, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9992 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
   *in cand* 0.9997 0.9992 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9991 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
   *in cand* 0.9996 0.9991 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
   *in cand* 0.9996 0.9993 EG12362 (menF) MENF-MONOMER (MenF)

- TRPSYN-PWY (tryptophan biosynthesis) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.400, average score: 1.000)
  Genes in pathway or complex:
             0.9994 0.9985 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
   *in cand* 0.9997 0.9992 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
   *in cand* 0.9997 0.9992 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.9979 0.9963 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.9979 0.9959 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9991 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
   *in cand* 0.9996 0.9991 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
   *in cand* 0.9996 0.9993 EG12362 (menF) MENF-MONOMER (MenF)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11027 EG11028 (centered at EG11028)
EG10261 (centered at EG10261)
EG10682 (centered at EG10682)
EG12362 (centered at EG12362)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12362   EG11028   EG11027   EG10682   EG10261   
299/623390/623362/623371/623292/623
AAEO224324:0:Tyes2792790254279
AAUR290340:2:Tyes29981760-02998
AAVE397945:0:Tyes-0140138-
ABAC204669:0:Tyes2422420247242
ABAU360910:0:Tyes-8401-
ABOR393595:0:Tyes-2012
ABUT367737:0:Tyes---0-
ACAU438753:0:Tyes-201-
ACEL351607:0:Tyes-1049-01049
ACRY349163:8:Tyes-100-
ADEH290397:0:Tyes0021-
AEHR187272:0:Tyes-2012
AFER243159:0:Tyes00210
AFUL224325:0:Tyes----0
AHYD196024:0:Tyes02338234025831904
AMAR329726:8:Tyes0----
AMAR329726:9:Tyes-399918043180
AMET293826:0:Tyes-021047-
ANAE240017:0:Tyes100820-1008
APER272557:0:Tyes--0-2
APLE416269:0:Tyes0120122-0
APLE434271:0:Tno0127129-0
ASAL382245:5:Tyes25052642620679
ASP1667:3:Tyes31491694-03149
ASP232721:2:Tyes-032-
ASP62928:0:Tyes22012
ASP62977:0:Tyes23110202220212311
ASP76114:2:Tyes-014130
AVAR240292:3:Tyes0209317771480
BABO262698:0:Tno0---0
BABO262698:1:Tno--0--
BAMB339670:3:Tno12922011292
BAMB398577:3:Tno-201-
BAMY326423:0:Tyes26901994-02813
BANT260799:0:Tno21930115512193
BANT261594:2:Tno21161085108702116
BANT568206:2:Tyes20763172317002076
BANT592021:2:Tno22251138114002225
BAPH198804:0:Tyes--0--
BBAC264462:0:Tyes0----
BBRO257310:0:Tyes-021-
BCAN483179:1:Tno--0--
BCEN331271:1:Tno0---0
BCEN331271:2:Tno-021-
BCEN331272:2:Tyes0---0
BCEN331272:3:Tyes-201-
BCER226900:1:Tyes21901138114002190
BCER288681:0:Tno21270113912127
BCER315749:1:Tyes32610-11616
BCER405917:1:Tyes46931230123202205
BCER572264:1:Tno22091065106702209
BCIC186490:0:Tyes---0-
BCLA66692:0:Tyes18371837183801837
BFRA272559:1:Tyes---13550
BFRA295405:0:Tno---13600
BHAL272558:0:Tyes16421642-0-
BJAP224911:0:Fyes--27290-
BLIC279010:0:Tyes30452252-03688
BLON206672:0:Tyes101101-0101
BMAL243160:0:Tno2201-
BMAL320388:0:Tno0021-
BMAL320389:0:Tyes0021-
BMEL224914:0:Tno0---0
BMEL224914:1:Tno--0--
BMEL359391:0:Tno0---0
BMEL359391:1:Tno--0--
BOVI236:1:Tyes--0--
BPAR257311:0:Tno-021-
BPER257313:0:Tyes-201-
BPET94624:0:Tyes-201564
BPSE272560:0:Tyes0---0
BPSE272560:1:Tyes-021-
BPSE320372:0:Tno0---0
BPSE320372:1:Tno-021-
BPSE320373:0:Tno0---0
BPSE320373:1:Tno-021-
BPUM315750:0:Tyes26761966196502676
BSP107806:0:Tyes-0---
BSP107806:2:Tyes--0--
BSP36773:1:Tyes0---0
BSP36773:2:Tyes-201-
BSP376:0:Tyes--0--
BSUB:0:Tyes31902352-03335
BSUI204722:0:Tyes0---0
BSUI204722:1:Tyes--0--
BSUI470137:0:Tno0---0
BSUI470137:1:Tno--0--
BTHA271848:0:Tno0---0
BTHA271848:1:Tno-021-
BTHE226186:0:Tyes---04250
BTHU281309:1:Tno20490105212049
BTHU412694:1:Tno19971034103601997
BVIE269482:7:Tyes-201-
BWEI315730:4:Tyes46241161116302167
CACE272562:1:Tyes-201-
CAULO:0:Tyes-032-
CBEI290402:0:Tyes-021-
CBLO203907:0:Tyes-02141-
CBLO291272:0:Tno-02147-
CBUR227377:1:Tyes-0-698-
CBUR434922:2:Tno-1096-0-
CCHL340177:0:Tyes1414203-01414
CCON360104:2:Tyes--0-192
CCUR360105:0:Tyes--0-1
CDES477974:0:Tyes22012
CDIF272563:1:Tyes---0-
CDIP257309:0:Tyes012261228-0
CEFF196164:0:Fyes015271529-0
CFET360106:0:Tyes--110
CGLU196627:0:Tyes017361738-0
CHUT269798:0:Tyes----0
CHYD246194:0:Tyes22012
CJAP155077:0:Tyes-201-
CJEI306537:0:Tyes5130--513
CJEJ192222:0:Tyes--1-0
CJEJ195099:0:Tno--0--
CJEJ354242:2:Tyes--1-0
CJEJ360109:0:Tyes--0-1
CJEJ407148:0:Tno--1-0
CKLU431943:1:Tyes-021-
CMAQ397948:0:Tyes0----
CMET456442:0:Tyes22012
CMIC31964:2:Tyes28711929-02871
CMIC443906:2:Tyes10650--1065
CNOV386415:0:Tyes---0-
CPEL335992:0:Tyes-1-0-
CPER195102:1:Tyes---0-
CPER195103:0:Tno-1-0-
CPER289380:3:Tyes---0-
CPHY357809:0:Tyes-201-
CPRO264201:0:Fyes---0-
CPSY167879:0:Tyes-280928110-
CRUT413404:0:Tyes-6430764-
CSAL290398:0:Tyes33013
CSP501479:8:Fyes-08685-
CSP78:2:Tyes-065-
CTEP194439:0:Tyes3850-115385
CVES412965:0:Tyes-5950691-
CVIO243365:0:Tyes07077017030
DARO159087:0:Tyes0661656657661
DDES207559:0:Tyes220--
DETH243164:0:Tyes00-1-
DGEO319795:1:Tyes0032-
DHAF138119:0:Tyes02720271727970
DNOD246195:0:Tyes---0-
DOLE96561:0:Tyes2201-
DPSY177439:2:Tyes00210
DRAD243230:3:Tyes-2510-
DRED349161:0:Tyes00210
DSHI398580:5:Tyes-032-
DSP216389:0:Tyes00-1-
DSP255470:0:Tno00-1-
DVUL882:1:Tyes0-2-0
ECAR218491:0:Tyes7411832183436420
ECOL199310:0:Tno20831021102033870
ECOL316407:0:Tno169167967833240
ECOL331111:6:Tno187381381130870
ECOL362663:0:Tno167868768628270
ECOL364106:1:Tno195393893732570
ECOL405955:2:Tyes167972472328780
ECOL409438:6:Tyes189667267130230
ECOL413997:0:Tno163368868726750
ECOL439855:4:Tno17621217121829270
ECOL469008:0:Tno10281967196802670
ECOL481805:0:Tno10522015201602716
ECOL585034:0:Tno175270970828920
ECOL585035:0:Tno171474874730150
ECOL585055:0:Tno191083983831480
ECOL585056:2:Tno193288788631480
ECOL585057:0:Tno18441057105632960
ECOL585397:0:Tno207887086933500
ECOL83334:0:Tno25751232123136690
ECOLI:0:Tno171368067928220
ECOO157:0:Tno25821651165336860
EFAE226185:3:Tyes0---0
EFER585054:1:Tyes077978024201587
ELIT314225:0:Tyes00-40
ESP42895:1:Tyes17031091109226890
FALN326424:0:Tyes-0-17280
FJOH376686:0:Tyes0---0
FMAG334413:1:Tyes---0-
FPHI484022:1:Tyes-20--
FRANT:0:Tno-0---
FSP106370:0:Tyes-0-14310
FSP1855:0:Tyes-1788-01788
FSUC59374:0:Tyes0-11-
FTUL351581:0:Tno-0---
FTUL393011:0:Tno-20--
FTUL393115:0:Tyes-0---
FTUL401614:0:Tyes-20--
FTUL418136:0:Tno-20--
FTUL458234:0:Tno-20--
GBET391165:0:Tyes44014
GKAU235909:1:Tyes28932221222002893
GMET269799:1:Tyes11-01
GOXY290633:5:Tyes-0---
GSUL243231:0:Tyes22012
GTHE420246:1:Tyes26652036203502665
GURA351605:0:Tyes00-10
GVIO251221:0:Tyes84684619360-
HACI382638:1:Tyes-20--
HARS204773:0:Tyes-201-
HAUR316274:2:Tyes12212382210701221
HCHE349521:0:Tyes437021437
HDUC233412:0:Tyes0---0
HHAL349124:0:Tyes09589569570
HHEP235279:0:Tyes-100-
HINF281310:0:Tyes012381235-0
HINF374930:0:Tyes0486488-0
HINF71421:0:Tno010771080-0
HMAR272569:7:Tyes---0-
HMAR272569:8:Tyes0-634-0
HMOD498761:0:Tyes00210
HMUK485914:1:Tyes01719172117180
HNEP81032:0:Tyes-201572
HPY:0:Tno-10--
HPYL357544:1:Tyes-02--
HPYL85963:0:Tno-20--
HSAL478009:4:Tyes0---0
HSOM205914:1:Tyes0---0
HSOM228400:0:Tno0342340-0
HSP64091:2:Tno0---0
HWAL362976:1:Tyes89--089
IHOS453591:0:Tyes0---0
ILOI283942:0:Tyes-02593-
JSP290400:1:Tyes3301-
JSP375286:0:Tyes2201-
KPNE272620:2:Tyes16811027724665
KRAD266940:2:Fyes0---0
LBIF355278:2:Tyes---0-
LBIF456481:2:Tno---0-
LBOR355276:1:Tyes-0-1-
LBOR355277:1:Tno-1-0-
LCAS321967:1:Tyes--0--
LCHO395495:0:Tyes-2001-
LINN272626:1:Tno112201273112
LINT189518:1:Tyes-0-1-
LINT267671:1:Tno-1-0-
LLAC272622:5:Tyes0735733-0
LLAC272623:0:Tyes07387365830
LMES203120:1:Tyes0409413-0
LMON169963:0:Tno4520117645
LMON265669:0:Tyes4620107446
LPLA220668:0:Tyes--0--
LPNE272624:0:Tno--01-
LPNE297245:1:Fno--01-
LPNE297246:1:Fyes--01-
LPNE400673:0:Tno--10-
LSPH444177:1:Tyes40623438-04062
LWEL386043:0:Tyes4720105047
LXYL281090:0:Tyes0752--0
MABS561007:1:Tyes35202628-03520
MACE188937:0:Tyes0-2-0
MAEO419665:0:Tyes0----
MAER449447:0:Tyes02144-21480
MAQU351348:2:Tyes00210
MAVI243243:0:Tyes-3116-04089
MBAR269797:1:Tyes220--
MBOV233413:0:Tno-1638-03263
MBOV410289:0:Tno-1613-03313
MBUR259564:0:Tyes220--
MCAP243233:0:Tyes00210
MEXT419610:0:Tyes-7657680-
MFLA265072:0:Tyes-4014
MGIL350054:3:Tyes38992819-03899
MHUN323259:0:Tyes00--0
MJAN243232:2:Tyes86186104861
MKAN190192:0:Tyes11-0-
MLAB410358:0:Tyes22012
MLEP272631:0:Tyes-798-0491
MLOT266835:2:Tyes--0--
MMAG342108:0:Tyes0010491048-
MMAR267377:0:Tyes0----
MMAR368407:0:Tyes0021-
MMAR394221:0:Tyes-9919889890
MMAR402880:1:Tyes0----
MMAR444158:0:Tyes0----
MMAZ192952:0:Tyes0-2-0
MPET420662:1:Tyes-201-
MSED399549:0:Tyes00---
MSME246196:0:Tyes-3167-01884
MSP164756:1:Tno-3045-01370
MSP164757:0:Tno-3042-01402
MSP189918:2:Tyes-3085-01382
MSP266779:3:Tyes--0--
MSP400668:0:Tyes568-10568
MSP409:2:Tyes-5137513401
MSTA339860:0:Tyes00--0
MSUC221988:0:Tyes66902-669
MTBCDC:0:Tno-1695-03454
MTBRV:0:Tno-1612-03236
MTHE187420:0:Tyes0061-
MTHE264732:0:Tyes22012
MTHE349307:0:Tyes2-0-2
MTUB336982:0:Tno-1612-03210
MTUB419947:0:Tyes-1652-03345
MVAN350058:0:Tyes-2764-01743
MXAN246197:0:Tyes18634331432101975
NARO279238:0:Tyes0021-
NEUR228410:0:Tyes-2176012176
NEUT335283:2:Tyes-1939011939
NFAR247156:2:Tyes-1819-05462
NGON242231:0:Tyes-0289290-
NHAM323097:2:Tyes--0--
NMEN122586:0:Tno-5110-
NMEN122587:0:Tyes-7410-
NMEN272831:0:Tno-5410-
NMEN374833:0:Tno-5510-
NMUL323848:3:Tyes-0194195-
NOCE323261:1:Tyes00210
NPHA348780:2:Tyes0312-3130
NSP103690:6:Tyes030011302410
NSP35761:1:Tyes0---0
NSP387092:0:Tyes-536-0-
NWIN323098:0:Tyes--0--
OANT439375:5:Tyes--0--
OCAR504832:0:Tyes--0--
OIHE221109:0:Tyes184520192463
PABY272844:0:Tyes--1-0
PACN267747:0:Tyes0---0
PAER178306:0:Tyes0-1-0
PAER208963:0:Tyes7834851078
PAER208964:0:Tno3622364103622
PARC259536:0:Tyes--01-
PARS340102:0:Tyes1-0-1
PATL342610:0:Tyes-219021920-
PCAR338963:0:Tyes00210
PCRY335284:1:Tyes--10-
PDIS435591:0:Tyes540--0540
PENT384676:0:Tyes19420431942
PFLU205922:0:Tyes-3-0-
PFLU216595:1:Tyes-1-0-
PFLU220664:0:Tyes02091-20850
PFUR186497:0:Tyes0-1-0
PGIN242619:0:Tyes----0
PHAL326442:1:Tyes-112611240-
PING357804:0:Tyes068568330840
PINT246198:1:Tyes---0-
PISL384616:0:Tyes1-201
PLUM243265:0:Fyes27392121212302739
PLUT319225:0:Tyes01107-240
PMAR146891:0:Tyes--7040-
PMAR167539:0:Tyes0156556070
PMAR167540:0:Tyes0-7926-
PMAR167542:0:Tyes--0--
PMAR167546:0:Tyes--0--
PMAR167555:0:Tyes0179968780
PMAR59920:0:Tno1309907013161309
PMAR74546:0:Tyes-1516-0-
PMAR74547:0:Tyes14341076014401434
PMAR93060:0:Tyes--7510-
PMEN399739:0:Tyes-5201-
PMOB403833:0:Tyes--012
PMUL272843:1:Tyes0531528-0
PNAP365044:8:Tyes-402-
PPRO298386:1:Tyes----0
PPRO298386:2:Tyes2329219021920-
PPUT160488:0:Tno-0430
PPUT351746:0:Tyes-0320
PPUT76869:0:Tno-0320
PRUM264731:0:Tyes227--0-
PSP117:0:Tyes-426203303-
PSP296591:2:Tyes-503-
PSP312153:0:Tyes-201-
PSP56811:2:Tyes--10-
PSTU379731:0:Tyes-0210
PSYR205918:0:Tyes-290129
PSYR223283:2:Tyes20130-242013
PTHE370438:0:Tyes2201-
RALB246199:0:Tyes-100-
RCAS383372:0:Tyes20373022037
RDEN375451:4:Tyes-054-
RETL347834:5:Tyes--0--
REUT264198:3:Tyes-021-
REUT381666:2:Tyes-021-
RFER338969:1:Tyes-503-
RLEG216596:6:Tyes--0--
RMET266264:2:Tyes-021-
RPAL258594:0:Tyes--0--
RPAL316055:0:Tyes--0--
RPAL316056:0:Tyes--0--
RPAL316057:0:Tyes--0--
RPAL316058:0:Tyes--0--
RPOM246200:1:Tyes-043-
RRUB269796:1:Tyes0054-
RSAL288705:0:Tyes3020-557302
RSOL267608:0:Tyes--0--
RSOL267608:1:Tyes-0-1-
RSP101510:3:Fyes41650-26724165
RSP357808:0:Tyes01404140114030
RSPH272943:4:Tyes33011873
RSPH349101:2:Tno33011777
RSPH349102:5:Tyes27172717271427150
RXYL266117:0:Tyes7922001792
SACI330779:0:Tyes00---
SACI56780:0:Tyes10632011063
SALA317655:1:Tyes-339-0-
SARE391037:0:Tyes-3246-0-
SAUR158878:1:Tno0---0
SAUR158879:1:Tno0---0
SAUR196620:0:Tno0---0
SAUR273036:0:Tno0---0
SAUR282458:0:Tno0---0
SAUR282459:0:Tno0---0
SAUR359786:1:Tno0---0
SAUR359787:1:Tno0---0
SAUR367830:3:Tno0---0
SAUR418127:0:Tyes0---0
SAUR426430:0:Tno0---0
SAUR93061:0:Fno0---0
SAUR93062:1:Tno0---0
SAVE227882:1:Fyes-1865-0-
SBAL399599:3:Tyes16920211131692
SBAL402882:1:Tno16240210651624
SBOY300268:1:Tyes17411269127027290
SCO:2:Fyes11850118318271185
SDEG203122:0:Tyes26850652685
SDEN318161:0:Tyes-02766-
SDYS300267:1:Tyes183777277128230
SELO269084:0:Tyes1409014705901409
SENT209261:0:Tno01018101933201632
SENT220341:0:Tno170361461333430
SENT295319:0:Tno057957826761519
SENT321314:2:Tno17131112111328270
SENT454169:2:Tno17801170117129510
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