CANDIDATE ID: 686

CANDIDATE ID: 686

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9948370e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12438 (menH) (b2263)
   Products of gene:
     - EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
       Reactions:
        2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate  ->  (1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate + pyruvate + H+
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG12362 (menF) (b2265)
   Products of gene:
     - MENF-MONOMER (MenF)
     - MENF-CPLX (isochorismate synthase 2)
       Reactions:
        chorismate  =  isochorismate
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-6374 (PWY-6374)
         PWY-5903 (PWY-5903)
         ENTBACSYN-PWY (enterobactin biosynthesis)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)
         PWY-5901 (2,3-dihydroxybenzoate biosynthesis)
         PWY-6406 (PWY-6406)

- EG11368 (menB) (b2262)
   Products of gene:
     - NAPHTHOATE-SYN-MONOMER (MenB)
     - CPLX0-7882 (1,4-dihydroxy-2-naphthoyl-CoA synthase)
       Reactions:
        o-succinylbenzoyl-CoA + H+  ->  1,4-dihydroxy-2-naphthoyl-CoA + H2O
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG10579 (menD) (b2264)
   Products of gene:
     - MEND-MONOMER (MenD)
     - CPLX0-7525 (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase)
       Reactions:
        2-oxoglutarate + isochorismate + 2 H+  ->  2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate + CO2
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG10261 (entC) (b0593)
   Products of gene:
     - ENTC-MONOMER (isochorismate synthase 1)
       Reactions:
        chorismate  =  isochorismate
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-6374 (PWY-6374)
         PWY-5903 (PWY-5903)
         ENTBACSYN-PWY (enterobactin biosynthesis)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)
         PWY-5901 (2,3-dihydroxybenzoate biosynthesis)
         PWY-6406 (PWY-6406)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 194
Effective number of orgs (counting one per cluster within 468 clusters): 130

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TROS309801 ncbi Thermomicrobium roseum DSM 51595
TFUS269800 ncbi Thermobifida fusca YX4
TERY203124 ncbi Trichodesmium erythraeum IMS1015
TELO197221 ncbi Thermosynechococcus elongatus BP-14
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSP84588 ncbi Synechococcus sp. WH 81024
SSP64471 ncbi Synechococcus sp. CC93114
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSP1148 ncbi Synechocystis sp. PCC 68035
SSP1131 Synechococcus sp. CC96054
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153055
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14355
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122285
SEPI176279 ncbi Staphylococcus epidermidis RP62A5
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SELO269084 ncbi Synechococcus elongatus PCC 63015
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAUR93062 ncbi Staphylococcus aureus aureus COL5
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83255
SAUR426430 ncbi Staphylococcus aureus aureus Newman5
SAUR418127 ncbi Staphylococcus aureus aureus Mu35
SAUR367830 Staphylococcus aureus aureus USA3005
SAUR359787 ncbi Staphylococcus aureus aureus JH15
SAUR359786 ncbi Staphylococcus aureus aureus JH95
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4765
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2525
SAUR273036 ncbi Staphylococcus aureus RF1225
SAUR196620 ncbi Staphylococcus aureus aureus MW25
SAUR158879 ncbi Staphylococcus aureus aureus N3155
SAUR158878 ncbi Staphylococcus aureus aureus Mu505
SACI56780 ncbi Syntrophus aciditrophicus SB5
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99415
RSP357808 ncbi Roseiflexus sp. RS-15
RSP101510 ncbi Rhodococcus jostii RHA14
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332094
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMAR74547 ncbi Prochlorococcus marinus MIT 93134
PMAR59920 ncbi Prochlorococcus marinus NATL2A4
PMAR167555 ncbi Prochlorococcus marinus NATL1A4
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13754
PLUT319225 ncbi Chlorobium luteolum DSM 2735
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PDIS435591 ncbi Parabacteroides distasonis ATCC 85034
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PAER178306 ncbi Pyrobaculum aerophilum IM24
PACN267747 ncbi Propionibacterium acnes KPA1712024
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
NSP35761 Nocardioides sp.5
NSP103690 ncbi Nostoc sp. PCC 71205
NPHA348780 ncbi Natronomonas pharaonis DSM 21604
NFAR247156 ncbi Nocardia farcinica IFM 101524
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MAER449447 ncbi Microcystis aeruginosa NIES-8435
MABS561007 ncbi Mycobacterium abscessus ATCC 199774
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53345
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LMON265669 ncbi Listeria monocytogenes 4b F23655
LMON169963 ncbi Listeria monocytogenes EGD-e5
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82935
LLAC272623 ncbi Lactococcus lactis lactis Il14035
LLAC272622 ncbi Lactococcus lactis cremoris SK115
LINN272626 ncbi Listeria innocua Clip112625
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
HWAL362976 ncbi Haloquadratum walsbyi DSM 167904
HSP64091 ncbi Halobacterium sp. NRC-14
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HSAL478009 ncbi Halobacterium salinarum R14
HMUK485914 ncbi Halomicrobium mukohataei DSM 122864
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FJOH376686 ncbi Flavobacterium johnsoniae UW1014
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
EFAE226185 ncbi Enterococcus faecalis V5835
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DRED349161 ncbi Desulfotomaculum reducens MI-14
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DARO159087 ncbi Dechloromonas aromatica RCB4
CTEP194439 ncbi Chlorobium tepidum TLS5
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CJEI306537 ncbi Corynebacterium jeikeium K4114
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334064
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CEFF196164 ncbi Corynebacterium efficiens YS-3144
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131294
CCHL340177 ncbi Chlorobium chlorochromatii CaD35
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1685
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
AVAR240292 ncbi Anabaena variabilis ATCC 294135
ASP62928 ncbi Azoarcus sp. BH724
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
ANAE240017 Actinomyces oris MG14
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis5
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  EG12438   EG12362   EG11368   EG10579   EG10261   
YPSE349747 YPSIP31758_1483YPSIP31758_1481YPSIP31758_1484YPSIP31758_1482
YPSE273123 YPTB2559YPTB2561YPTB2558YPTB2560
YPES386656 YPDSF_1936YPDSF_1938YPDSF_1935YPDSF_1937
YPES377628 YPN_2121YPN_2123YPN_2120YPN_2122
YPES360102 YPA_2018YPA_2020YPA_2017YPA_2019
YPES349746 YPANGOLA_A1784YPANGOLA_A1786YPANGOLA_A1783YPANGOLA_A1785
YPES214092 YPO2526YPO2528YPO2525YPO2527
YPES187410 Y1661Y1659Y1662Y1660
YENT393305 YE1376YE1373YE1377YE1375YE1373
VVUL216895 VV1_3171VV1_3173VV1_3170VV1_3172VV2_0835
VVUL196600 VV1117VV1115VV1118VV1116VVA1300
VPAR223926 VP0930VP0928VP0931VP0929VP0928
VFIS312309 VF1670VF1672VF1669VF1671VF1672
VCHO345073 VC0395_A1560VC0395_A1562VC0395_A1559VC0395_A1561VC0395_A0302
VCHO VC1974VC1976VC1973VC1975VC0773
TTUR377629 TERTU_2727TERTU_2729TERTU_2726TERTU_2728TERTU_4059
TROS309801 TRD_A0259TRD_A0262TRD_A0304TRD_A0261TRD_A0262
TFUS269800 TFU_1872TFU_1409TFU_1411TFU_1872
TERY203124 TERY_4069TERY_4072TERY_4088TERY_4077TERY_4072
TELO197221 TLL1213TLL2458TLL0130TLL1213
STYP99287 STM2308STM2310STM2307STM2309STM0595
SSP94122 SHEWANA3_3966SHEWANA3_4071SHEWANA3_4123SHEWANA3_3965SHEWANA3_4071
SSP84588 SYNW2308OR0956SYNW0998OR0030SYNW0997OR0029SYNW2308OR0956
SSP64471 GSYN2802GSYN1636GSYN1635GSYN2802
SSP321332 CYB_2299CYB_0565CYB_2045CYB_2299
SSP321327 CYA_2455CYA_0530CYA_0082CYA_2455
SSP1148 SLR1916SLR0817SLL1127SLL0603SLR0817
SSP1131 SYNCC9605_2439SYNCC9605_1123SYNCC9605_1122SYNCC9605_2439
SSON300269 SSO_2324SSO_2326SSO_2323SSO_2325SSO_0544
SSED425104 SSED_0225SSED_0130SSED_4478SSED_0226SSED_0130
SSAP342451 SSP1747SSP1749SSP1746SSP1748SSP1749
SRUB309807 SRU_1350SRU_2766SRU_1351SRU_1350
SPRO399741 SPRO_3282SPRO_3284SPRO_3281SPRO_3283SPRO_3421
SPEA398579 SPEA_3972SPEA_4089SPEA_4225SPEA_3971SPEA_4089
SONE211586 SO_4574SO_4713SO_4739SO_4573SO_4713
SLOI323850 SHEW_3600SHEW_3677SHEW_3814SHEW_3599SHEW_3677
SHIGELLA YFBBMENFMENBMENDMENF
SHAL458817 SHAL_0296SHAL_0155SHAL_4273SHAL_0297SHAL_0155
SHAE279808 SH1918SH1920SH1917SH1919SH1920
SFLE373384 SFV_2334SFV_2336SFV_2333SFV_2335SFV_2336
SFLE198214 AAN43856.1AAN43858.1AAN43855.1AAN43857.1AAN43858.1
SERY405948 SACE_4756SACE_6911SACE_6914SACE_6913SACE_3854
SEPI176280 SE_0745SE_0743SE_0746SE_0744SE_0743
SEPI176279 SERP0631SERP0629SERP0632SERP0630SERP0629
SENT454169 SEHA_C2548SEHA_C2550SEHA_C2547SEHA_C2549SEHA_C0707
SENT321314 SCH_2308SCH_2310SCH_2307SCH_2309SCH_0626
SENT295319 SPA0555SPA0553SPA0556SPA0554SPA2139
SENT220341 STY2538STY2541STY2537STY2540STY0639
SENT209261 T0555T0553T0556T0554T2273
SELO269084 SYC0762_CSYC1908_DSYC0926_DSYC0121_DSYC1908_D
SDYS300267 SDY_2459SDY_2461SDY_2458SDY_2460SDY_0524
SBOY300268 SBO_2300SBO_2302SBO_2299SBO_2301SBO_0454
SBAL402882 SHEW185_4158SHEW185_4311SHEW185_4358SHEW185_4157SHEW185_4311
SBAL399599 SBAL195_4289SBAL195_4451SBAL195_4500SBAL195_4288SBAL195_4451
SAUR93062 SACOL1053SACOL1051SACOL1054SACOL1052SACOL1051
SAUR93061 SAOUHSC_00984SAOUHSC_00982SAOUHSC_00985SAOUHSC_00983SAOUHSC_00982
SAUR426430 NWMN_0914NWMN_0912NWMN_0915NWMN_0913NWMN_0912
SAUR418127 SAHV_1037SAHV_1035SAHV_1038SAHV_1036SAHV_1035
SAUR367830 SAUSA300_0947SAUSA300_0945SAUSA300_0948SAUSA300_0946SAUSA300_0945
SAUR359787 SAURJH1_1126SAURJH1_1124SAURJH1_1127SAURJH1_1125SAURJH1_1124
SAUR359786 SAURJH9_1103SAURJH9_1101SAURJH9_1104SAURJH9_1102SAURJH9_1101
SAUR282459 SAS0980SAS0978SAS0981SAS0979SAS0978
SAUR282458 SAR1018SAR1016SAR1019SAR1017SAR1016
SAUR273036 SAB0911SAB0909SAB0912SAB0910SAB0909
SAUR196620 MW0928MW0926MW0929MW0927MW0926
SAUR158879 SA0897SA0895SA0898SA0896SA0895
SAUR158878 SAV1044SAV1042SAV1045SAV1043SAV1042
SACI56780 SYN_02621SYN_02398SYN_02400SYN_02399SYN_02398
RXYL266117 RXYL_2894RXYL_2897RXYL_2893RXYL_2896RXYL_2897
RSP357808 ROSERS_4115ROSERS_0026ROSERS_0024ROSERS_0025ROSERS_0026
RSP101510 RHA1_RO05194RHA1_RO02630RHA1_RO01997RHA1_RO05194
RSAL288705 RSAL33209_2639RSAL33209_2700RSAL33209_2643RSAL33209_2639
RCAS383372 RCAS_1310RCAS_4216RCAS_4218RCAS_4217RCAS_4216
PPRO298386 PBPRA2623PBPRA2625PBPRA2624PBPRB1824
PMUL272843 PM0055PM0053PM1096PM0054PM0053
PMAR74547 PMT2060PMT0405PMT0406PMT2060
PMAR59920 PMN2A_1545PMN2A_0044PMN2A_0043PMN2A_1545
PMAR167555 NATL1_02521NATL1_06641NATL1_06631NATL1_02521
PMAR167539 PRO_0202PRO_1053PRO_1054PRO_0202
PLUT319225 PLUT_0329PLUT_0332PLUT_0328PLUT_0331PLUT_0332
PLUM243265 PLU3072PLU3074PLU3071PLU3073PLU3074
PING357804 PING_0351PING_0355PING_0350PING_0352PING_0355
PDIS435591 BDI_1135BDI_1137BDI_1136BDI_1135
PAER208964 PA4152PA4231PA2013PA4231
PAER208963 PA14_10240PA14_09210PA14_38470PA14_09210
PAER178306 PAE2460PAE1383PAE3300PAE2460
PACN267747 PPA0904PPA0907PPA0903PPA0904
OIHE221109 OB2324OB2326OB2323OB2325OB0955
NSP35761 NOCA_1790NOCA_0516NOCA_4299NOCA_0510NOCA_0516
NSP103690 ALL2753ALL0032ALL2347ALR0312ALL0032
NPHA348780 NP2724ANP2730ANP2726ANP2724A
NFAR247156 NFA35240NFA51380NFA51330NFA54680
MXAN246197 MXAN_3529MXAN_3527MXAN_3154MXAN_3528MXAN_3646
MSUC221988 MS1793MS1795MS1792MS1794MS1795
MGIL350054 MFLV_4680MFLV_0025MFLV_5263MFLV_4680
MAER449447 MAE_07710MAE_01970MAE_45860MAE_26640MAE_01970
MABS561007 MAB_3535MAB_3945MAB_3933CMAB_3535
LXYL281090 LXX01810LXX01440LXX01490LXX01810
LWEL386043 LWE1692LWE1694LWE1691LWE1693LWE1694
LSPH444177 BSPH_4276BSPH_4278BSPH_4275BSPH_4277BSPH_4278
LMON265669 LMOF2365_1698LMOF2365_1700LMOF2365_1697LMOF2365_1699LMOF2365_1700
LMON169963 LMO1674LMO1676LMO1673LMO1675LMO1676
LMES203120 LEUM_0753LEUM_0751LEUM_0016LEUM_0752LEUM_0751
LLAC272623 L0170L0168L0171L0169L0168
LLAC272622 LACR_0772LACR_0774LACR_0771LACR_0773LACR_0774
LINN272626 LIN1782LIN1784LIN1781LIN1783LIN1784
KRAD266940 KRAD_3982KRAD_0641KRAD_0646KRAD_3982
KPNE272620 GKPORF_B1965GKPORF_B1967GKPORF_B1964GKPORF_B1966GKPORF_B5030
HWAL362976 HQ1872AHQ1874AHQ1873AHQ1872A
HSP64091 VNG1083GVNG1079GVNG1081GVNG1083G
HSOM228400 HSM_0967HSM_0969HSM_1612HSM_0968HSM_0969
HSOM205914 HS_0616HS_0618HS_0562HS_0617HS_0618
HSAL478009 OE2566ROE2561ROE2563ROE2566R
HMUK485914 HMUK_0041HMUK_2252HMUK_2535HMUK_0041
HMAR272569 RRNAC0837RRNAC0841RRNAC0838RRNAC0837
HINF71421 HI_0282HI_0285HI_0968HI_0283HI_0285
HINF374930 CGSHIEE_01645CGSHIEE_01635CGSHIEE_07120CGSHIEE_01640CGSHIEE_01635
HINF281310 NTHI0391NTHI0393NTHI1141NTHI0392NTHI0393
HHAL349124 HHAL_1128HHAL_1126HHAL_1129HHAL_1127HHAL_1126
HDUC233412 HD_1854HD_0621HD_1925HD_1853HD_0621
GURA351605 GURA_3245GURA_1731GURA_3041GURA_1731
GTHE420246 GTNG_2772GTNG_2774GTNG_2771GTNG_2773GTNG_2774
GKAU235909 GK2874GK2876GK2873GK2875GK2876
FJOH376686 FJOH_4718FJOH_2784FJOH_2781FJOH_4718
ESP42895 ENT638_2813ENT638_2815ENT638_2812ENT638_2814ENT638_1125
EFER585054 EFER_0905EFER_0903EFER_0906EFER_0904EFER_2501
EFAE226185 EF_0449EF_0447EF_0445EF_0448EF_0447
ECOO157 YFBBMENFMENBMENDENTC
ECOL83334 ECS3151ECS3153ECS3150ECS3152ECS0632
ECOL585397 ECED1_2731ECED1_2733ECED1_2730ECED1_2732ECED1_0590
ECOL585057 ECIAI39_2411ECIAI39_2413ECIAI39_2410ECIAI39_2412ECIAI39_0570
ECOL585056 ECUMN_2606ECUMN_2608ECUMN_2605ECUMN_2607ECUMN_0687
ECOL585055 EC55989_2511EC55989_2513EC55989_2510EC55989_2512EC55989_0585
ECOL585035 ECS88_2414ECS88_2416ECS88_2413ECS88_2415ECS88_0632
ECOL585034 ECIAI1_2341ECIAI1_2343ECIAI1_2340ECIAI1_2342ECIAI1_0577
ECOL481805 ECOLC_1385ECOLC_1383ECOLC_1386ECOLC_1384ECOLC_3051
ECOL469008 ECBD_1395ECBD_1393ECBD_1396ECBD_1394ECBD_3061
ECOL439855 ECSMS35_2418ECSMS35_2420ECSMS35_2417ECSMS35_2419ECSMS35_0613
ECOL413997 ECB_02190ECB_02192ECB_02189ECB_02191ECB_00560
ECOL409438 ECSE_2523ECSE_2525ECSE_2522ECSE_2524ECSE_0660
ECOL405955 APECO1_4298APECO1_4296APECO1_4299APECO1_4297APECO1_1456
ECOL364106 UTI89_C2547UTI89_C2549UTI89_C2545UTI89_C2548UTI89_C0595
ECOL362663 ECP_2307ECP_2309ECP_2306ECP_2308ECP_0625
ECOL331111 ECE24377A_2559ECE24377A_2562ECE24377A_2558ECE24377A_2560ECE24377A_0613
ECOL316407 ECK2257:JW2258:B2263ECK2259:JW2260:B2265ECK2256:JW2257:B2262ECK2258:JW5374:B2264ECK0586:JW0585:B0593
ECOL199310 C2807C2809C2805C2808C0680
ECAR218491 ECA1212ECA1210ECA1213ECA1211ECA0477
DVUL882 DVU_0642DVU_0465DVU_0360DVU_0465
DRED349161 DRED_0353DRED_0248DRED_1492DRED_0248
DPSY177439 DP1619DP0252DP0253DP1619
DHAF138119 DSY0519DSY0517DSY0520DSY0518DSY0517
DARO159087 DARO_2823DARO_1616DARO_2345DARO_3481
CTEP194439 CT_1845CT_1838CT_1846CT_1839CT_1838
CSAL290398 CSAL_0327CSAL_2323CSAL_0538CSAL_2323
CMIC443906 CMM_2810CMM_0576CMM_2812CMM_2810
CMIC31964 CMS3013CMS2584CMS3017CMS3013
CJEI306537 JK1285JK1870JK1868JK1285
CHUT269798 CHU_3642CHU_1897CHU_1759CHU_1758
CGLU196627 CG1462CG0548CG0552CG1462
CEFF196164 CE1388CE2780CE0478CE1388
CDIP257309 DIP1114DIP0421DIP0423DIP1114
CCHL340177 CAG_1720CAG_1701CAG_1719CAG_1700CAG_1701
BWEI315730 BCERKBAB4_4696BCERKBAB4_4698BCERKBAB4_4695BCERKBAB4_4697BCERKBAB4_2176
BTHU412694 BALH_4420BALH_2108BALH_4419BALH_4421BALH_2108
BTHU281309 BT9727_4587BT9727_2144BT9727_4586BT9727_4588BT9727_2144
BTHA271848 BTH_II1498BTH_II1833BTH_I2899BTH_II1833
BSUB BSU30810BSU30830BSU30800BSU30820BSU31990
BSP36773 BCEP18194_A5138BCEP18194_B0667BCEP18194_C6721BCEP18194_B0667
BPUM315750 BPUM_2717BPUM_2719BPUM_2716BPUM_2718BPUM_2719
BLIC279010 BL02407BL02409BL02406BL02408BL04021
BCLA66692 ABC1895ABC1509ABC2645ABC1895
BCER572264 BCA_4990BCA_2436BCA_4989BCA_4991BCA_2436
BCER405917 BCE_5014BCE_5016BCE_5013BCE_5015BCE_2399
BCER315749 BCER98_3492BCER98_3494BCER98_3491BCER98_3493BCER98_1755
BCER288681 BCE33L4609BCE33L2128BCE33L4608BCE33L4610BCE33L2128
BCER226900 BC_4854BC_2303BC_4853BC_4855BC_2303
BCEN331272 BCEN2424_1837BCEN2424_5003BCEN2424_6400BCEN2424_5003
BCEN331271 BCEN_6242BCEN_3364BCEN_1429BCEN_3364
BBAC264462 BD3483BD3485BD3492BD3484
BANT592021 BAA_5122BAA_2427BAA_5121BAA_5123BAA_2427
BANT568206 BAMEG_5144BAMEG_2231BAMEG_5143BAMEG_5145BAMEG_2231
BANT261594 GBAA5110GBAA2369GBAA5109GBAA5111GBAA2369
BANT260799 BAS4749BAS2205BAS4748BAS4750BAS2205
BAMY326423 RBAM_027790RBAM_027810RBAM_027780RBAM_027800RBAM_029040
AVAR240292 AVA_4319AVA_2632AVA_0166AVA_4706AVA_2632
ASP62928 AZO3325AZO0790AZO1034AZO3325
ASP1667 ARTH_3133ARTH_3283ARTH_3138ARTH_3133
ASAL382245 ASA_3736ASA_3738ASA_3735ASA_3737ASA_1838
APLE434271 APJL_1784APJL_1060APJL_1860APJL_1785APJL_1060
APLE416269 APL_1749APL_1042APL_1824APL_1750APL_1042
ANAE240017 ANA_1627ANA_1649ANA_1629ANA_1627
AMAR329726 AM1_A0125AM1_5258AM1_1108AM1_1109
AHYD196024 AHA_0530AHA_0532AHA_0529AHA_0531AHA_2479
AAUR290340 AAUR_3103AAUR_3275AAUR_3107AAUR_3103


Organism features enriched in list (features available for 184 out of the 194 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 7.293e-81617
Arrangment:Pairs 1.033e-657112
Disease:Anthrax 0.009701144
Disease:Bubonic_plague 0.000934066
Disease:Dysentery 0.000934066
Disease:Gastroenteritis 0.00009521113
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 2.509e-61111
Disease:Urinary_tract_infection 0.009701144
Endospores:Yes 0.00523802553
GC_Content_Range4:0-40 0.000424550213
GC_Content_Range4:40-60 4.995e-8100224
GC_Content_Range4:60-100 0.004160134145
GC_Content_Range7:50-60 3.123e-654107
GC_Content_Range7:60-70 0.000743128134
Genome_Size_Range5:0-2 6.174e-217155
Genome_Size_Range5:4-6 9.861e-1090184
Genome_Size_Range9:1-2 1.577e-157128
Genome_Size_Range9:2-3 0.007563348120
Genome_Size_Range9:4-5 0.00208004296
Genome_Size_Range9:5-6 6.839e-74888
Gram_Stain:Gram_Pos 0.000564263150
Habitat:Host-associated 0.003837152206
Motility:Yes 0.0013815100267
Optimal_temp.:20-30 0.000288177
Optimal_temp.:30-37 2.292e-81718
Oxygen_Req:Aerobic 0.000261841185
Oxygen_Req:Anaerobic 4.174e-614102
Oxygen_Req:Facultative 5.146e-18110201
Pathogenic_in:Human 0.000632584213
Pathogenic_in:No 0.003684058226
Salinity:Extreme_halophilic 0.000288177
Shape:Rod 1.249e-6135347
Shape:Sphere 0.0059307119
Shape:Spiral 0.0000270134
Temp._range:Hyperthermophilic 0.0014874123



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 282
Effective number of orgs (counting one per cluster within 468 clusters): 221

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP292414 ncbi Ruegeria sp. TM10400
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SGOR29390 Streptococcus gordonii Challis1
SGLO343509 ncbi Sodalis glossinidius morsitans0
SDEN318161 ncbi Shewanella denitrificans OS2170
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RMET266264 ncbi Ralstonia metallidurans CH341
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.0
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ951
PMEN399739 ncbi Pseudomonas mendocina ymp0
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-11
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MSYN262723 ncbi Mycoplasma synoviae 530
MSP266779 ncbi Chelativorans sp. BNC11
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
ILOI283942 ncbi Idiomarina loihiensis L2TR0
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H0
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R11
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJAP155077 Cellvibrio japonicus0
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I1
BPAR257311 ncbi Bordetella parapertussis 128221
BOVI236 Brucella ovis0
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP232721 ncbi Acidovorax sp. JS421
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-11
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
AAVE397945 ncbi Acidovorax citrulli AAC00-11


Names of the homologs of the genes in the group in each of these orgs
  EG12438   EG12362   EG11368   EG10579   EG10261   
XFAS405440 XFASM12_0179
XFAS183190 PD_0170
XFAS160492 XF0210
WSUC273121
WPIP955
WPIP80849
VEIS391735 VEIS_4105
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX797
TVOL273116
TTHE300852 TTHA1844
TTHE262724 TT_C1493
TSP28240 TRQ2_0806
TSP1755
TPSE340099
TPET390874 TPET_0783
TPEN368408
TPAL243276
TMAR243274 TM_0142
TLET416591
TKOD69014 TK0254
TDEN326298
TDEN243275
TCRU317025 TCR_0266
TACI273075
SWOL335541 SWOL_2031
STRO369723
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP644076
SSP387093
SSP292414
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC02263
SMED366394 SMED_0749
SMAR399550
SLAC55218
SGOR29390 SGO_0657
SGLO343509
SDEN318161
SARE391037 SARE_1099
SALA317655 SALA_1945
SAGA211110
SAGA208435
SAGA205921
RTYP257363
RSOL267608 RSC2872
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_A0277
RPAL316058 RPB_3345
RMET266264 RMET_3162
RMAS416276
RFER338969
RFEL315456
RETL347834 RHE_CH02790
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR205918 PSYR_4609
PSP56811
PSP312153 PNUC_1558
PSP296591 BPRO_1122
PSP117
PPEN278197
PMOB403833 PMOB_1213
PMEN399739
PHOR70601
PHAL326442
PFLU216595
PFLU205922 PFL_3939
PCRY335284
PAST100379
PARC259536
PABY272844 PAB2045
OTSU357244
OCAR504832 OCAR_5290
OANT439375 OANT_4115
NSP387092
NSEN222891
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_2722
NGON242231
NARO279238 SARO_2021
MSYN262723
MSP266779 MESO_2953
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAR444158 MMARC6_1653
MMAR426368 MMARC7_1674
MMAR368407 MEMAR_0071
MMAR267377 MMP1006
MLOT266835 MLL5584
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MBUR259564 MBUR_2365
MBAR269797 MBAR_A3626
MART243272
MAEO419665 MAEO_1117
LSAK314315
LREU557436 LREU_0887
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LJOH257314
LINT363253 LI0807
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_1186
LCAS321967
LBRE387344 LVIS_0066
LBOR355277
LBOR355276
LBIF456481 LEPBI_I0792
LBIF355278 LBF_0766
LACI272621
JSP375286 MMA_0235
ILOI283942
HPYL85963
HPYL357544
HPY
HHEP235279
HBUT415426
HARS204773
HACI382638
GOXY290633
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374 FSU0540
FSP1855 FRANEAN1_1928
FSP106370 FRANCCI3_3020
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FALN326424 FRAAL4972
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DSP255470 CBDBA1441
DSP216389 DEHABAV1_1271
DSHI398580
DRAD243230 DR_1151
DOLE96561 DOLE_1569
DNOD246195
DETH243164 DET_1481
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_00479
CSUL444179
CRUT413404
CPSY167879
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2287
CPER195103 CPF_2585
CPER195102 CPE2301
CPEL335992 SAR11_0003
CNOV386415 NT01CX_0474
CMUR243161
CKOR374847 KCR_0114
CJEJ407148 C8J_0322
CJEJ360109 JJD26997_1614
CJEJ354242 CJJ81176_0369
CJEJ195099
CJEJ192222 CJ0345
CJAP155077
CHOM360107
CFET360106 CFF8240_0350
CFEL264202
CDIF272563 CD0800
CCUR360105 CCV52592_1683
CCON360104 CCC13826_1602
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232 CLM_3614
CBOT515621 CLJ_B3474
CBOT498213 CLD_1329
CBOT441772 CLI_3341
CBOT441771 CLC_3112
CBOT441770 CLB_3238
CBOT36826 CBO3202
CBLO291272
CBLO203907
CBEI290402 CBEI_0321
CACE272562 CAC2712
CABO218497
BTUR314724
BTRI382640
BSP376 BRADO6150
BSP107806
BQUI283165
BPER257313 BP3277
BPAR257311 BPP4144
BOVI236
BHER314723
BHEN283166
BGAR290434
BCIC186490
BCAN483179
BBUR224326
BBRO257310 BB4614
BBAC360095
BAPH372461
BAPH198804
BAMB398577 BAMMC406_1748
BAFZ390236
AYEL322098
AURANTIMONAS
ASP232721 AJS_3623
APHA212042
APER272557 APE2553
AORE350688 CLOS_0165
AMET293826 AMET_3418
AMAR234826
ALAI441768
AEHR187272 MLG_2250
ACRY349163 ACRY_1450
ACEL351607 ACEL_1071
ACAU438753 AZC_0802
ABUT367737
ABOR393595 ABO_2027
AAVE397945 AAVE_0882


Organism features enriched in list (features available for 260 out of the 282 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00116855492
Arrangment:Clusters 0.0005183117
Arrangment:Pairs 0.001036636112
Disease:Pharyngitis 0.001472988
Disease:Wide_range_of_infections 0.00012321111
Disease:bronchitis_and_pneumonitis 0.001472988
GC_Content_Range4:0-40 1.063e-19147213
GC_Content_Range4:40-60 1.166e-770224
GC_Content_Range4:60-100 4.483e-642145
GC_Content_Range7:0-30 6.439e-154547
GC_Content_Range7:30-40 1.248e-7102166
GC_Content_Range7:50-60 3.289e-725107
GC_Content_Range7:60-70 0.000032340134
Genome_Size_Range5:0-2 7.749e-32130155
Genome_Size_Range5:4-6 1.573e-1342184
Genome_Size_Range5:6-10 0.00034531047
Genome_Size_Range9:0-1 1.027e-72527
Genome_Size_Range9:1-2 8.959e-23105128
Genome_Size_Range9:4-5 0.00014082796
Genome_Size_Range9:5-6 3.266e-91588
Genome_Size_Range9:6-8 0.00836551038
Habitat:Aquatic 0.00809003191
Habitat:Host-associated 0.0000103116206
Habitat:Terrestrial 0.0055797731
Motility:Yes 0.000072297267
Optimal_temp.:- 0.0077537127257
Optimal_temp.:30-37 0.0002977118
Oxygen_Req:Facultative 5.590e-665201
Salinity:Non-halophilic 0.003561959106
Shape:Rod 7.663e-11117347
Shape:Sphere 0.00175391519
Shape:Spiral 5.612e-93134



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)2281760.7556
PWY-6406 (salicylate biosynthesis I)1881500.6906
PWY-5852 (demethylmenaquinone-8 biosynthesis I)1671260.5791
MANNIDEG-PWY (mannitol degradation I)99770.4378
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50490.4265



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12362   EG11368   EG10579   EG10261   
EG124380.9995490.9995640.9996960.998947
EG123620.9994240.9996960.999924
EG113680.9997590.998847
EG105790.999431
EG10261



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PAIRWISE BLAST SCORES:

  EG12438   EG12362   EG11368   EG10579   EG10261   
EG124380.0f0----
EG12362-0.0f0--2.9e-28
EG11368--0.0f0--
EG10579---0.0f0-
EG10261-3.2e-29--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY-5838 (superpathway of menaquinone-8 biosynthesis I) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.800, average score: 0.816)
  Genes in pathway or complex:
             0.7566 0.1533 EG10017 (ispB) OPPSYN-MONOMER (IspB)
             0.3242 0.1400 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9995 0.9988 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
   *in cand* 0.9996 0.9989 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
   *in cand* 0.9997 0.9994 EG12362 (menF) MENF-MONOMER (MenF)
             0.9992 0.9984 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
             0.9991 0.9982 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.9134 0.6008 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
             0.9986 0.9979 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)

- PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I) (degree of match pw to cand: 0.571, degree of match cand to pw: 0.800, average score: 0.784)
  Genes in pathway or complex:
             0.9991 0.9982 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.9992 0.9984 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
   *in cand* 0.9997 0.9994 EG12362 (menF) MENF-MONOMER (MenF)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
   *in cand* 0.9996 0.9989 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9995 0.9988 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.3242 0.1400 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)

- ALL-CHORISMATE-PWY (superpathway of chorismate) (degree of match pw to cand: 0.088, degree of match cand to pw: 1.000, average score: 0.580)
  Genes in pathway or complex:
             0.7139 0.2243 EG10799 (purN) GART-MONOMER (phosphoribosylglycinamide formyltransferase 1)
             0.7510 0.2747 EG11375 (folE) GTP-CYCLOHYDRO-I-MONOMER (GTP cyclohydrolase I monomer)
             0.6977 0.5185 EG11138 (nudB) H2NEOPTERINP3PYROPHOSPHOHYDRO-MONOMER (dihydroneopterin triphosphate pyrophosphohydrolase)
             0.6265 0.1428 EG11673 (folB) H2NEOPTERINALDOL-MONOMER (FolB)
             0.3892 0.1629 EG11374 (folK) H2PTERIDINEPYROPHOSPHOKIN-MONOMER (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)
             0.6504 0.4965 G6862 (folM) G6862-MONOMER (dihydromonapterin reductase / dihydrofolate reductase)
             0.4378 0.0962 EG10326 (folA) DIHYDROFOLATEREDUCT-MONOMER (dihydrofolate reductase)
             0.8650 0.5054 EG10327 (folC) FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
             0.8461 0.6938 EG10328 (folD) FOLD-MONOMER (FolD)
             0.6365 0.1089 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
             0.6652 0.3392 EG10683 (pabB) PABASYN-COMPI-MONOMER (PabB)
             0.3463 0.2692 EG50011 (folP) H2PTEROATESYNTH-MONOMER (FolP)
             0.7686 0.5977 EG11493 (pabC) ADCLY-MONOMER (pabC)
             0.5195 0.3070 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
             0.5453 0.4104 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.8001 0.2309 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.3796 0.1492 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
             0.6377 0.3725 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
             0.8522 0.3577 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
             0.5689 0.2764 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.5688 0.2242 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
             0.0874 0.0393 EG11040 (tyrB) TYRB-MONOMER (TyrB)
             0.1763 0.1457 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.7652 0.4637 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.6793 0.5269 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.3455 0.0592 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.5875 0.1867 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.7347 0.3983 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.6298 0.1764 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.8116 0.6019 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.6284 0.1257 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.9302 0.8582 EG10075 (aroC) AROC-MONOMER (AroC)
             0.8331 0.5072 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.4831 0.2283 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.4570 0.1119 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.7625 0.5930 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.4373 0.3002 EG10076 (aroD) AROD-MONOMER (AroD)
             0.5102 0.3576 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.4132 0.0500 EG10079 (aroG) AROG-MONOMER (AroG)
             0.4925 0.0958 EG10080 (aroH) AROH-MONOMER (AroH)
             0.6475 0.4460 EG10078 (aroF) AROF-MONOMER (AroF)
             0.5882 0.1817 EG11234 (ydiB) EG11234-MONOMER (YdiB)
   *in cand* 0.9994 0.9988 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
             0.7722 0.3782 EG10259 (entA) ENTA-MONOMER (EntA)
             0.7002 0.2159 EG10263 (entE) ENTE-MONOMER (EntE)
             0.7756 0.5854 EG10264 (entF) ENTF-PANT (aryl carrier protein / serine activating enzyme)
             0.4098 0.1111 EG10262 (entD) ENTD-MONOMER (phosphopantetheinyl transferase)
             0.5405 0.0501 EG10260 (entB) ENTB-MONOMER (EntB)
             0.3242 0.1400 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9995 0.9988 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
   *in cand* 0.9996 0.9989 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
   *in cand* 0.9997 0.9994 EG12362 (menF) MENF-MONOMER (MenF)
             0.9992 0.9984 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
             0.9991 0.9982 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.9986 0.9979 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
             0.9134 0.6008 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
  All candidate genes found in this pathway
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10579 EG11368 EG12362 EG12438 (centered at EG10579)
EG10261 (centered at EG10261)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12438   EG12362   EG11368   EG10579   EG10261   
185/623299/623320/623257/623292/623
AAEO224324:0:Tyes-0--0
AAUR290340:2:Tyes-017250
AAVE397945:0:Tyes--0--
ABAC204669:0:Tyes-29320-2932
ABAU360910:0:Tyes0-2252--
ABOR393595:0:Tyes----0
ACAU438753:0:Tyes--0--
ACEL351607:0:Tyes----0
ACRY349163:8:Tyes--0--
ADEH290397:0:Tyes-24290335-
AEHR187272:0:Tyes----0
AFER243159:0:Tyes-0--0
AFUL224325:0:Tyes--0-409
AHYD196024:0:Tyes13021907
AMAR329726:8:Tyes-0---
AMAR329726:9:Tyes--411501
AMET293826:0:Tyes---0-
ANAE240017:0:Tyes-02120
AORE350688:0:Tyes--0--
APER272557:0:Tyes----0
APLE416269:0:Tyes74708237480
APLE434271:0:Tno76808477690
ASAL382245:5:Tyes18241826182318250
ASP1667:3:Tyes-014850
ASP232721:2:Tyes--0--
ASP62928:0:Tyes-258002552580
ASP62977:0:Tyes-9900-990
ASP76114:2:Tyes--016411304
AVAR240292:3:Tyes41642478045562478
BABO262698:0:Tno-0--0
BAMB339670:3:Tno850--0
BAMB398577:3:Tno0----
BAMY326423:0:Tyes1302126
BANT260799:0:Tno25290252825300
BANT261594:2:Tno25310253025320
BANT568206:2:Tyes28300282928310
BANT592021:2:Tno26670266626680
BBAC264462:0:Tyes0291-
BBRO257310:0:Tyes--0--
BCEN331271:0:Tno0----
BCEN331271:1:Tno-0--0
BCEN331271:2:Tno--0--
BCEN331272:1:Tyes--0--
BCEN331272:2:Tyes-0--0
BCEN331272:3:Tyes0----
BCER226900:1:Tyes24910249024920
BCER288681:0:Tno24680246724690
BCER315749:1:Tyes16431645164216440
BCER405917:1:Tyes24862488248524870
BCER572264:1:Tno25220252125230
BCLA66692:0:Tyes-39101152391
BFRA272559:1:Tyes--310
BFRA295405:0:Tno--310
BHAL272558:0:Tyes-0337--
BJAP224911:0:Fyes--0461-
BLIC279010:0:Tyes1302646
BLON206672:0:Tyes-448-0448
BMAL243160:0:Tno-011--
BMAL320388:0:Tno-110--
BMAL320389:0:Tyes-100--
BMEL224914:0:Tno-0--0
BMEL224914:1:Tno--0--
BMEL359391:0:Tno-0--0
BPAR257311:0:Tno--0--
BPER257313:0:Tyes--0--
BPET94624:0:Tyes--0-549
BPSE272560:0:Tyes-0--0
BPSE272560:1:Tyes--0--
BPSE320372:0:Tno-0--0
BPSE320372:1:Tno--0--
BPSE320373:0:Tno-0--0
BPSE320373:1:Tno--0--
BPUM315750:0:Tyes13023
BSP36773:0:Tyes---0-
BSP36773:1:Tyes-0--0
BSP36773:2:Tyes0----
BSP376:0:Tyes---0-
BSUB:0:Tyes1302148
BSUI204722:0:Tyes-0--0
BSUI470137:0:Tno9920--0
BTHA271848:0:Tno0334--334
BTHA271848:1:Tno--0--
BTHE226186:0:Tyes--210
BTHU281309:1:Tno24280242724290
BTHU412694:1:Tno22060220522070
BVIE269482:6:Tyes--0--
BVIE269482:7:Tyes0----
BWEI315730:4:Tyes24552457245424560
BXEN266265:0:Tyes--0--
BXEN266265:1:Tyes0----
CACE272562:1:Tyes--0--
CAULO:0:Tyes--02121-
CBEI290402:0:Tyes--0--
CBOT36826:1:Tno--0--
CBOT441770:0:Tyes--0--
CBOT441771:0:Tno--0--
CBOT441772:1:Tno--0--
CBOT498213:1:Tno--0--
CBOT508765:1:Tyes--0317-
CBOT515621:2:Tyes--0--
CBOT536232:0:Tno--0--
CCHL340177:0:Tyes2011901
CCON360104:2:Tyes----0
CCUR360105:0:Tyes----0
CDES477974:0:Tyes-0--0
CDIF272563:1:Tyes--0--
CDIP257309:0:Tyes-68102681
CEFF196164:0:Fyes-92323560923
CFET360106:0:Tyes----0
CGLU196627:0:Tyes-82904829
CHUT269798:0:Tyes1851-13810
CHYD246194:0:Tyes-013-0
CJEI306537:0:Tyes-06046020
CJEJ192222:0:Tyes----0
CJEJ354242:2:Tyes----0
CJEJ360109:0:Tyes----0
CJEJ407148:0:Tno----0
CKLU431943:1:Tyes--01152-
CKOR374847:0:Tyes--0--
CMAQ397948:0:Tyes-7040832-
CMET456442:0:Tyes-0--0
CMIC31964:2:Tyes-4070411407
CMIC443906:2:Tyes-2287022892287
CNOV386415:0:Tyes--0--
CPEL335992:0:Tyes---0-
CPER195102:1:Tyes--0--
CPER195103:0:Tno--0--
CPER289380:3:Tyes--0--
CPRO264201:0:Fyes3-04-
CSAL290398:0:Tyes02049-2242049
CSP501479:5:Fyes0----
CSP501479:8:Fyes---0-
CSP78:2:Tyes--17420-
CTEP194439:0:Tyes60710
CTET212717:0:Tyes--0--
CVIO243365:0:Tyes-0--0
DARO159087:0:Tyes-120907291870
DDES207559:0:Tyes-3136-0-
DETH243164:0:Tyes-0---
DGEO319795:1:Tyes-0607--
DHAF138119:0:Tyes20310
DOLE96561:0:Tyes-0---
DPSY177439:2:Tyes-1412011412
DRAD243230:3:Tyes--0--
DRED349161:0:Tyes10501253-0
DSP216389:0:Tyes-0---
DSP255470:0:Tno-0---
DVUL882:1:Tyes280105-0105
ECAR218491:0:Tyes7437417447420
ECOL199310:0:Tno20812083207920820
ECOL316407:0:Tno16891691168816900
ECOL331111:6:Tno18711873187018720
ECOL362663:0:Tno16761678167516770
ECOL364106:1:Tno19511953194919520
ECOL405955:2:Tyes16771679167616780
ECOL409438:6:Tyes18941896189318950
ECOL413997:0:Tno16311633163016320
ECOL439855:4:Tno17601762175917610
ECOL469008:0:Tno20311642
ECOL481805:0:Tno20311664
ECOL585034:0:Tno17501752174917510
ECOL585035:0:Tno17121714171117130
ECOL585055:0:Tno19081910190719090
ECOL585056:2:Tno19301932192919310
ECOL585057:0:Tno18421844184118430
ECOL585397:0:Tno20762078207520770
ECOL83334:0:Tno25732575257225740
ECOLI:0:Tno17111713171017120
ECOO157:0:Tno25802582257925810
EFAE226185:3:Tyes42032
EFER585054:1:Tyes20311587
ELIT314225:0:Tyes-0--0
ESP42895:1:Tyes17011703170017020
FALN326424:0:Tyes----0
FJOH376686:0:Tyes-1929301929
FSP106370:0:Tyes----0
FSP1855:0:Tyes----0
FSUC59374:0:Tyes-0---
GBET391165:0:Tyes-0--0
GFOR411154:0:Tyes--05-
GKAU235909:1:Tyes13023
GMET269799:1:Tyes-2710-271
GSUL243231:0:Tyes-10020-1002
GTHE420246:1:Tyes13023
GURA351605:0:Tyes150301309-0
GVIO251221:0:Tyes2860---
HAUR316274:2:Tyes10070--0
HCHE349521:0:Tyes-0--0
HDUC233412:0:Tyes10810113710800
HHAL349124:0:Tyes20310
HINF281310:0:Tyes0269212
HINF374930:0:Tyes2094210
HINF71421:0:Tno0267512
HMAR272569:8:Tyes-0410
HMOD498761:0:Tyes-8290-829
HMUK485914:1:Tyes-0221724970
HNEP81032:0:Tyes1043-74-0
HSAL478009:4:Tyes-2012
HSOM205914:1:Tyes555705657
HSOM228400:0:Tno0264412
HSP64091:2:Tno-2012
HWAL362976:1:Tyes-0210
IHOS453591:0:Tyes-0--0
JSP290400:1:Tyes-02364--
JSP375286:0:Tyes-0---
KPNE272620:2:Tyes13022987
KRAD266940:2:Fyes-1192501192
LBIF355278:2:Tyes---0-
LBIF456481:2:Tno---0-
LBRE387344:2:Tyes--0--
LCHO395495:0:Tyes--0--
LINN272626:1:Tno13023
LINT363253:3:Tyes--0--
LLAC272622:5:Tyes13023
LLAC272623:0:Tyes13023
LMES203120:1:Tyes6746720673672
LMON169963:0:Tno13023
LMON265669:0:Tyes13023
LREU557436:0:Tyes--0--
LSPH444177:1:Tyes13023
LWEL386043:0:Tyes13023
LXYL281090:0:Tyes-300530
MABS561007:1:Tyes-04124000
MACE188937:0:Tyes-0--0
MAEO419665:0:Tyes-0---
MAER449447:0:Tyes5750441824830
MAQU351348:2:Tyes-0--0
MAVI243243:0:Tyes--4264180
MBAR269797:1:Tyes-0---
MBOV233413:0:Tno--082716
MBOV410289:0:Tno--072768
MBUR259564:0:Tyes-0---
MCAP243233:0:Tyes-0--0
MFLA265072:0:Tyes0---307
MGIL350054:3:Tyes-4677052604677
MHUN323259:0:Tyes-0--0
MJAN243232:2:Tyes-816-0816
MKAN190192:0:Tyes-0-95-
MLAB410358:0:Tyes-0--0
MLEP272631:0:Tyes--8948990
MLOT266835:2:Tyes--0--
MMAG342108:0:Tyes280711790--
MMAR267377:0:Tyes-0---
MMAR368407:0:Tyes-0---
MMAR394221:0:Tyes0---97
MMAR402880:1:Tyes-0-358-
MMAR426368:0:Tyes---0-
MMAR444158:0:Tyes-0---
MMAZ192952:0:Tyes-0--0
MSED399549:0:Tyes-0308--
MSME246196:0:Tyes--034844
MSP164756:1:Tno--016648
MSP164757:0:Tno--016687
MSP189918:2:Tyes--016656
MSP266779:3:Tyes--0--
MSP400668:0:Tyes14090--0
MSP409:2:Tyes---1710
MSTA339860:0:Tyes-0--0
MSUC221988:0:Tyes13023
MTBCDC:0:Tno--092895
MTBRV:0:Tno--072701
MTHE187420:0:Tyes-1178-0-
MTHE264732:0:Tyes-0--0
MTHE349307:0:Tyes-0--0
MTUB336982:0:Tno--062664
MTUB419947:0:Tyes--072798
MVAN350058:0:Tyes--028828
MXAN246197:0:Tyes3633610362473
NARO279238:0:Tyes-0---
NEUR228410:0:Tyes152---0
NEUT335283:2:Tyes38---0
NFAR247156:2:Tyes0-163716321968
NHAM323097:2:Tyes---0-
NOCE323261:1:Tyes-0--0
NPHA348780:2:Tyes-0310
NSP103690:6:Tyes2748023372840
NSP35761:1:Tyes12666378706
NWIN323098:0:Tyes--092-
OANT439375:4:Tyes0----
OCAR504832:0:Tyes---0-
OIHE221109:0:Tyes13801382137913810
PABY272844:0:Tyes----0
PACN267747:0:Tyes-1401
PAER178306:0:Tyes-79301429793
PAER208963:0:Tyes8002358-0
PAER208964:0:Tno216122400-2240
PARS340102:0:Tyes-0-3060
PATL342610:0:Tyes0--548-
PCAR338963:0:Tyes-0--0
PDIS435591:0:Tyes-0210
PENT384676:0:Tyes-0--0
PFLU205922:0:Tyes0----
PFLU220664:0:Tyes6860--0
PFUR186497:0:Tyes-0--0
PGIN242619:0:Tyes--012
PING357804:0:Tyes13023
PINT246198:1:Tyes--01-
PISL384616:0:Tyes-1329-01329
PLUM243265:0:Fyes13023
PLUT319225:0:Tyes14034
PMAR146891:0:Tyes--10-
PMAR167539:0:Tyes-08738740
PMAR167540:0:Tyes-0444443-
PMAR167542:0:Tyes--10-
PMAR167546:0:Tyes--10-
PMAR167555:0:Tyes-04254240
PMAR59920:0:Tno-1527101527
PMAR74546:0:Tyes--10-
PMAR74547:0:Tyes-1685011685
PMAR93060:0:Tyes--10-
PMOB403833:0:Tyes----0
PMUL272843:1:Tyes20104310
PNAP365044:8:Tyes560-0--
PPRO298386:1:Tyes----0
PPRO298386:2:Tyes02-1-
PPUT160488:0:Tno134---0
PPUT351746:0:Tyes148---0
PPUT76869:0:Tno157---0
PRUM264731:0:Tyes-201-
PSP296591:2:Tyes--0--
PSP312153:0:Tyes--0--
PSTU379731:0:Tyes--1174-0
PSYR205918:0:Tyes----0
PSYR223283:2:Tyes-0--0
PTHE370438:0:Tyes-11440--
RCAS383372:0:Tyes02874287628752874
RETL347834:5:Tyes---0-
REUT264198:1:Tyes--0--
REUT264198:2:Tyes---0-
REUT381666:1:Tyes--0172-
RLEG216596:4:Tyes--0--
RLEG216596:6:Tyes---0-
RMET266264:2:Tyes--0--
RPAL258594:0:Tyes--01379-
RPAL316055:0:Tyes--01561-
RPAL316056:0:Tyes--02224-
RPAL316057:0:Tyes--0556-
RPAL316058:0:Tyes---0-
RPOM246200:0:Tyes0----
RRUB269796:1:Tyes-01904--
RSAL288705:0:Tyes-06140
RSOL267608:1:Tyes--0--
RSP101510:3:Fyes-318963303189
RSP357808:0:Tyes40442012
RSPH272943:4:Tyes-02401-1870
RSPH349101:2:Tno-7130-2487
RSPH349102:5:Tyes-27172211-0
RXYL266117:0:Tyes14034
SACI330779:0:Tyes-0196--
SACI56780:0:Tyes055535455
SALA317655:1:Tyes0----
SARE391037:0:Tyes--0--
SAUR158878:1:Tno20310
SAUR158879:1:Tno20310
SAUR196620:0:Tno20310
SAUR273036:0:Tno20310
SAUR282458:0:Tno20310
SAUR282459:0:Tno20310
SAUR359786:1:Tno20310
SAUR359787:1:Tno20310
SAUR367830:3:Tno20310
SAUR418127:0:Tyes20310
SAUR426430:0:Tno20310
SAUR93061:0:Fno20310
SAUR93062:1:Tno20310
SAVE227882:1:Fyes0-3332--
SBAL399599:3:Tyes11622150162
SBAL402882:1:Tno11522020152
SBOY300268:1:Tyes17391741173817400
SCO:2:Fyes02965--2965
SDEG203122:0:Tyes-0--0
SDYS300267:1:Tyes18351837183418360
SELO269084:0:Tyes650183581901835
SENT209261:0:Tno20311632
SENT220341:0:Tno17011703170017020
SENT295319:0:Tno20311519
SENT321314:2:Tno17111713171017120
SENT454169:2:Tno17781780177717790
SEPI176279:1:Tyes20310
SEPI176280:0:Tno20310
SERY405948:0:Tyes8992968297129700
SFLE198214:0:Tyes13023
SFLE373384:0:Tno13023
SFUM335543:0:Tyes-01791--
SGOR29390:0:Tyes-0---
SHAE279808:0:Tyes13023
SHAL458817:0:Tyes141042331420
SHIGELLA:0:Tno13023
SLOI323850:0:Tyes178222078
SMED366394:3:Tyes---0-
SMEL266834:2:Tyes---0-
SONE211586:1:Tyes11391650139
SPEA398579:0:Tno11182580118
SPRO399741:1:Tyes1302147
SRUB309807:1:Tyes-0138610
SSAP342451:2:Tyes13023
SSED425104:0:Tyes9504498960
SSOL273057:0:Tyes-0--0
SSON300269:1:Tyes16921694169116930
SSP1131:0:Tyes-1308101308
SSP1148:0:Tyes0100039918631000
SSP321327:0:Tyes-226443102264
SSP321332:0:Tyes-1690014421690
SSP64471:0:Tyes-1112101112
SSP84588:0:Tyes-1343101343
SSP94122:1:Tyes11051600105
STHE292459:0:Tyes-12550-1255
STOK273063:0:Tyes-0324--
STYP99287:1:Tyes16971699169616980
SWOL335541:0:Tyes--0--
TCRU317025:0:Tyes----0
TDEN292415:0:Tyes0--3501947
TELO197221:0:Tyes-1102237201102
TERY203124:0:Tyes031663
TFUS269800:0:Tyes-45802458
TKOD69014:0:Tyes----0
TMAR243274:0:Tyes-0---
TPET390874:0:Tno-0---
TROS309801:0:Tyes024412
TSP28240:0:Tyes-0---
TTEN273068:0:Tyes-9880-988
TTHE262724:1:Tyes-0---
TTHE300852:2:Tyes-0---
TTUR377629:0:Tyes13021213
TWHI203267:0:Tyes--62190
TWHI218496:0:Tno--53140
UMET351160:0:Tyes-0---
VCHO:0:Tyes11971199119611980
VCHO345073:1:Tno12431245124212440
VEIS391735:1:Tyes--0--
VFIS312309:2:Tyes13023
VPAR223926:1:Tyes20310
VVUL196600:1:Tyes----0
VVUL196600:2:Tyes2031-
VVUL216895:0:Tno----0
VVUL216895:1:Tno1302-
XAUT78245:1:Tyes660-0--
XAXO190486:0:Tyes542-0--
XCAM190485:0:Tyes-01075--
XCAM314565:0:Tno-02222--
XCAM316273:0:Tno-22100--
XCAM487884:0:Tno-02253--
XFAS160492:2:Tno-0---
XFAS183190:1:Tyes-0---
XFAS405440:0:Tno-0---
XORY291331:0:Tno-16190--
XORY342109:0:Tyes-15230--
XORY360094:0:Tno-02564--
YENT393305:1:Tyes20310
YPES187410:5:Tno2031-
YPES214092:3:Tno1302-
YPES349746:2:Tno1302-
YPES360102:3:Tyes1302-
YPES377628:2:Tno1302-
YPES386656:2:Tno1302-
YPSE273123:2:Tno1302-
YPSE349747:2:Tno2031-
ZMOB264203:0:Tyes-0--0



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