CANDIDATE ID: 693

CANDIDATE ID: 693

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9940700e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   7.8000000e-25

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6847 (ynfG) (b1589)
   Products of gene:
     - G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)
     - CPLX0-1601 (putative selenate reductase)
       Reactions:
        selenate + a reduced electron acceptor  ->  selenite + an oxidized electron acceptor + H2O

- EG11857 (fdoH) (b3893)
   Products of gene:
     - FDOH-MONOMER (formate dehydrogenase-O, β subunit)
     - FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11799 (hybA) (b2996)
   Products of gene:
     - HYBA-MONOMER (hydrogenase 2 4Fe-4S ferredoxin-type component)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG11228 (fdnH) (b1475)
   Products of gene:
     - FDNH-MONOMER (formate dehydrogenase N, β subunit)
     - ALPHA-SUBUNIT-CPLX (trimer complex of formate dehydrogenase-N α, β and γ subunits)
     - FORMATEDEHYDROGN-CPLX (formate dehydrogenase-N)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG10233 (dmsB) (b0895)
   Products of gene:
     - DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
     - DIMESULFREDUCT-CPLX (dimethyl sulfoxide reductase)
       Reactions:
        dimethyl sulfoxide[periplasmic space] + a menaquinol  ->  dimethylsulfide[periplasmic space] + a menaquinone + H2O[periplasmic space]
         In pathways
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1348 (NADH to dimethyl sulfoxide electron transfer)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 139
Effective number of orgs (counting one per cluster within 468 clusters): 90

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
WSUC273121 ncbi Wolinella succinogenes DSM 17405
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
TROS309801 ncbi Thermomicrobium roseum DSM 51595
TPEN368408 ncbi Thermofilum pendens Hrk 55
TKOD69014 ncbi Thermococcus kodakarensis KOD15
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB5
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
PSTU379731 ncbi Pseudomonas stutzeri A15014
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PISL384616 ncbi Pyrobaculum islandicum DSM 41845
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L485
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135145
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER178306 ncbi Pyrobaculum aerophilum IM25
PACN267747 ncbi Propionibacterium acnes KPA1712025
OCAR504832 ncbi Oligotropha carboxidovorans OM54
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSP409 Methylobacterium sp.5
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MCAP243233 ncbi Methylococcus capsulatus Bath5
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL14
HBUT415426 ncbi Hyperthermus butylicus DSM 54565
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf45
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DSP255470 ncbi Dehalococcoides sp. CBDB15
DSP216389 ncbi Dehalococcoides sp. BAV15
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DOLE96561 ncbi Desulfococcus oleovorans Hxd35
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DETH243164 ncbi Dehalococcoides ethenogenes 1955
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP501479 Citreicella sp. SE454
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF85
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
BXEN266265 ncbi Burkholderia xenovorans LB4005
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-55
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAEO224324 ncbi Aquifex aeolicus VF55


Names of the homologs of the genes in the group in each of these orgs
  G6847   EG11857   EG11799   EG11228   EG10233   
YPSE349747 YPSIP31758_3260YPSIP31758_4118YPSIP31758_4118YPSIP31758_4118YPSIP31758_3260
YPSE273123 YPTB0806YPTB3928YPTB3928YPTB3928YPTB0806
YPES386656 YPDSF_3036YPDSF_0036YPDSF_0036YPDSF_0036YPDSF_3036
YPES377628 YPN_0769YPN_3704YPN_3704YPN_3704YPN_0769
YPES360102 YPA_2820YPA_3028YPA_3028YPA_3028YPA_2820
YPES349746 YPANGOLA_A0921YPANGOLA_A3769YPANGOLA_A3769YPANGOLA_A3769YPANGOLA_A0921
YPES214092 YPO3324YPO4057YPO4057YPO4057YPO3324
YPES187410 Y0865Y4077Y4077Y4077Y0865
WSUC273121 WS1431WS0936WS0936WS0936WS1431
VVUL216895 VV1_3033VV1_3033VV1_3033VV1_3033VV1_3033
VVUL196600 VV2222VV1252VV1252VV1252VV1252
VPAR223926 VP1448VP1927VP1448VP1927VP1448
VFIS312309 VFA0081VFA0081VFA0081VFA0081
VEIS391735 VEIS_3995VEIS_3995VEIS_3995VEIS_3995VEIS_3995
TROS309801 TRD_A0058TRD_1973TRD_1973TRD_1973TRD_A0058
TPEN368408 TPEN_0189TPEN_1409TPEN_1122TPEN_1409TPEN_1409
TKOD69014 TK2075TK2075TK2075TK2075TK2075
TDEN292415 TBD_1739TBD_1739TBD_1739TBD_1739TBD_1739
SWOL335541 SWOL_1824SWOL_0798SWOL_0798SWOL_0798SWOL_1824
STYP99287 STM0965STM4036STM3149STM1569STM0965
STHE292459 STH2331STH3100STH2600STH3100STH2331
SSP94122 SHEWANA3_0635SHEWANA3_2090SHEWANA3_2090SHEWANA3_0103SHEWANA3_0635
SSON300269 SSO_1575SSO_4062SSO_3141SSO_1649SSO_0896
SSED425104 SSED_0349SSED_2922SSED_0230SSED_2798SSED_0349
SPRO399741 SPRO_1688SPRO_0085SPRO_2923SPRO_0085SPRO_1688
SPEA398579 SPEA_3862SPEA_0439SPEA_0439SPEA_0439SPEA_3862
SONE211586 SO_4357SO_0102SO_0102SO_0102SO_4357
SLOI323850 SHEW_0241SHEW_3157SHEW_0352SHEW_0241
SHIGELLA S1742FDOHHYBAFDNHDMSB
SHAL458817 SHAL_0406SHAL_0494SHAL_0494SHAL_0494SHAL_0406
SFUM335543 SFUM_3286SFUM_0037SFUM_1149SFUM_0037SFUM_3286
SFLE373384 SFV_1604SFV_3602SFV_3049SFV_1746SFV_0886
SFLE198214 AAN43194.1AAN45404.1AAN44521.1AAN43322.1AAN42487.1
SENT454169 SEHA_C1667SEHA_C4362SEHA_C3396SEHA_C1746SEHA_C1667
SENT321314 SCH_0919SCH_3926SCH_3090SCH_1570SCH_0919
SENT295319 SPA1357SPA3878SPA3017SPA1299SPA1357
SENT220341 STY0963STY3841STY3320STY3841STY0963
SENT209261 T1969T3584T3070T3584T1969
SDYS300267 SDY_1567SDY_3850SDY_3077SDY_1605SDY_1567
SBOY300268 SBO_1582SBO_3907SBO_2867SBO_1582SBO_1582
SBAL402882 SHEW185_2548SHEW185_0101SHEW185_0101SHEW185_0101SHEW185_2548
SBAL399599 SBAL195_2227SBAL195_0106SBAL195_0106SBAL195_0106SBAL195_2227
SACI56780 SYN_00633SYN_00604SYN_00604SYN_00604SYN_00633
RXYL266117 RXYL_2725RXYL_2725RXYL_2725RXYL_1206
RFER338969 RFER_4089RFER_4089RFER_4089RFER_2793
REUT381666 H16_B1453H16_B1453H16_B1453H16_B1453
PSTU379731 PST_0165PST_0165PST_0165PST_0165
PPUT76869 PPUTGB1_0533PPUTGB1_0533PPUTGB1_0533PPUTGB1_0533
PPUT351746 PPUT_0524PPUT_0524PPUT_0524PPUT_0524
PPUT160488 PP_0490PP_0490PP_0490PP_0490
PMUL272843 PM1755PM0407PM0407PM0407PM1755
PISL384616 PISL_1995PISL_1995PISL_1995PISL_1995PISL_1995
PFLU205922 PFL_2699PFL_2699PFL_2699PFL_2699
PENT384676 PSEEN0565PSEEN0565PSEEN0565PSEEN0565PSEEN0565
PARS340102 PARS_0953PARS_0953PARS_0937PARS_0953PARS_0953
PAER208964 PA4811PA4811PA4811PA4811PA4811
PAER178306 PAE1263PAE2661PAE2860PAE2661PAE1263
PACN267747 PPA0516PPA0516PPA0516PPA0516PPA0516
OCAR504832 OCAR_6767OCAR_6767OCAR_5160OCAR_5160
MTHE264732 MOTH_1385MOTH_0451MOTH_0451MOTH_0451MOTH_1385
MSP409 M446_5827M446_5827M446_5827M446_5827M446_5827
MSP189918 MKMS_5309MKMS_5309MKMS_5309MKMS_5309
MSP164757 MJLS_5601MJLS_5601MJLS_5601MJLS_5601
MSP164756 MMCS_5221MMCS_5221MMCS_5221MMCS_5221
MPET420662 MPE_A0859MPE_A0859MPE_A0859MPE_A0859MPE_A0859
MMAG342108 AMB1649AMB1649AMB1649AMB1649AMB1649
MLOT266835 MLL5613MLL5613MLL5613MLL5613MLL5613
MCAP243233 MCA_1209MCA_1209MCA_1209MCA_1209MCA_1209
KRAD266940 KRAD_1603KRAD_1603KRAD_1603KRAD_1603
KPNE272620 GKPORF_B5368GKPORF_B3530GKPORF_B5368GKPORF_B0955GKPORF_B5368
HINF71421 HI_1046HI_0007HI_0007HI_0007HI_1046
HINF281310 NTHI1206NTHI0010NTHI0010NTHI0010NTHI1206
HHAL349124 HHAL_1935HHAL_1935HHAL_1935HHAL_1935
HBUT415426 HBUT_1052HBUT_1052HBUT_1052HBUT_1052HBUT_1052
HARS204773 HEAR3343HEAR3343HEAR3343HEAR3343HEAR3343
GURA351605 GURA_3387GURA_3373GURA_1944GURA_3373GURA_3387
GSUL243231 GSU_0778GSU_0778GSU_0783GSU_0778GSU_0778
GMET269799 GMET_1060GMET_1060GMET_1060GMET_1060GMET_1060
ESP42895 ENT638_1419ENT638_4086ENT638_2053ENT638_2053ENT638_1419
EFER585054 EFER_4182EFER_3884EFER_2939EFER_1491EFER_4182
ECOO157 Z2577FDOHHYBAFDNHDMSB
ECOL83334 ECS2295ECS4819ECS3881ECS2079ECS0980
ECOL585397 ECED1_1758ECED1_4596ECED1_3646ECED1_1626ECED1_0925
ECOL585057 ECIAI39_1469ECIAI39_3106ECIAI39_3492ECIAI39_1738ECIAI39_2253
ECOL585056 ECUMN_1874ECUMN_4423ECUMN_3480ECUMN_1729ECUMN_1090
ECOL585055 EC55989_1754EC55989_4370EC55989_3413EC55989_1607EC55989_0940
ECOL585035 ECS88_1634ECS88_4341ECS88_3378ECS88_1568ECS88_0926
ECOL585034 ECIAI1_1639ECIAI1_4097ECIAI1_3145ECIAI1_1479ECIAI1_0935
ECOL481805 ECOLC_2041ECOLC_4125ECOLC_0697ECOLC_2182ECOLC_2701
ECOL469008 ECBD_2057ECBD_4132ECBD_0742ECBD_2164ECBD_2700
ECOL439855 ECSMS35_1611ECSMS35_4279ECSMS35_3282ECSMS35_1699ECSMS35_2225
ECOL413997 ECB_01558ECB_03778ECB_02872ECB_01433ECB_00899
ECOL409438 ECSE_1710ECSE_4179ECSE_3281ECSE_1564ECSE_0953
ECOL405955 APECO1_672APECO1_2572APECO1_3426APECO1_2572APECO1_1194
ECOL364106 UTI89_C1776UTI89_C4480UTI89_C3418UTI89_C1691UTI89_C0968
ECOL362663 ECP_0909ECP_4105ECP_3082ECP_1476ECP_0909
ECOL331111 ECE24377A_1796ECE24377A_4422ECE24377A_3465ECE24377A_1657ECE24377A_0971
ECOL316407 ECK1584:JW1581:B1589ECK3886:JW3864:B3893ECK2990:JW2964:B2996ECK1469:JW1471:B1475ECK0886:JW0878:B0895
ECOL199310 C1979C4843C3733C1906C1032
ECAR218491 ECA1407ECA1407ECA1226ECA1407ECA1407
DVUL882 DVU_2481DVU_0535DVU_2481DVU_0535
DSP255470 CBDBA131CBDBA131CBDBA131CBDBA131CBDBA131
DSP216389 DEHABAV1_0256DEHABAV1_0256DEHABAV1_0256DEHABAV1_0256DEHABAV1_0256
DSHI398580 DSHI_1237DSHI_1237DSHI_1237DSHI_1237DSHI_1237
DOLE96561 DOLE_0196DOLE_1333DOLE_2251DOLE_1333DOLE_0196
DHAF138119 DSY0356DSY3100DSY4711DSY3100DSY0356
DETH243164 DET_0112DET_0112DET_0112DET_0112DET_0112
DDES207559 DDE_0681DDE_0718DDE_0652DDE_0718DDE_1075
DARO159087 DARO_2583DARO_1817DARO_3973DARO_1817DARO_2583
CVIO243365 CV_3840CV_3840CV_3840CV_3840CV_3840
CSP501479 CSE45_0187CSE45_3304CSE45_3304CSE45_0187
CKOR374847 KCR_0761KCR_0761KCR_0761KCR_0761KCR_0761
CHYD246194 CHY_2573CHY_0794CHY_0794CHY_0794CHY_2573
CDES477974 DAUD_1043DAUD_1579DAUD_1579DAUD_1579DAUD_1579
BXEN266265 BXE_B1742BXE_B2552BXE_B2552BXE_B2552BXE_B1742
BVIE269482 BCEP1808_4487BCEP1808_4487BCEP1808_4487BCEP1808_4487BCEP1808_4487
BTHA271848 BTH_II0708BTH_II0708BTH_II0708BTH_II0708BTH_II0708
BSP36773 BCEP18194_B2000BCEP18194_B2099BCEP18194_B2099BCEP18194_B2099BCEP18194_B2000
BPSE320373 BURPS668_A2395BURPS668_A2395BURPS668_A2395BURPS668_A2395BURPS668_A3222
BPSE320372 BURPS1710B_B0860BURPS1710B_B0860BURPS1710B_B0860BURPS1710B_B0860BURPS1710B_B1697
BPSE272560 BPSS1666BPSS1666BPSS1666BPSS1666BPSS2300
BMAL320389 BMA10247_A0572BMA10247_A0572BMA10247_A0572BMA10247_A0572BMA10247_A2339
BMAL320388 BMASAVP1_1693BMASAVP1_1693BMASAVP1_1693BMASAVP1_1693BMASAVP1_1072
BMAL243160 BMA_A1682BMA_A1682BMA_A1682BMA_A1682BMA_A2048
BCEN331272 BCEN2424_3985BCEN2424_3985BCEN2424_3985BCEN2424_3985BCEN2424_3985
BCEN331271 BCEN_4381BCEN_4381BCEN_4381BCEN_4381BCEN_4381
BAMB398577 BAMMC406_3880BAMMC406_3880BAMMC406_3880BAMMC406_3880BAMMC406_3880
BAMB339670 BAMB_3378BAMB_3378BAMB_3378BAMB_3378BAMB_3378
ASP76114 EBA1012EBA3055EBA3055EBA3055EBA5630
ASAL382245 ASA_2323ASA_1789ASA_1789ASA_1789ASA_2323
APLE434271 APJL_1706APJL_0906APJL_1350APJL_0906APJL_1706
APLE416269 APL_1675APL_0894APL_1332APL_0894APL_1675
AHYD196024 AHA_3287AHA_2525AHA_2525AHA_2525AHA_3287
AEHR187272 MLG_1676MLG_1676MLG_0634MLG_1676MLG_1676
ADEH290397 ADEH_0823ADEH_3755ADEH_0480ADEH_3755ADEH_0823
ACRY349163 ACRY_2645ACRY_2645ACRY_2645ACRY_2645ACRY_2645
ABAU360910 BAV3144BAV3144BAV3144BAV3144BAV3144
ABAC204669 ACID345_2944ACID345_0869ACID345_4238ACID345_0869ACID345_2944
AAEO224324 AQ_1232AQ_1046AQ_1046AQ_1046AQ_1232


Organism features enriched in list (features available for 133 out of the 139 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0003151992
Arrangment:Pairs 0.003689136112
Disease:Bubonic_plague 0.000129066
Disease:Dysentery 0.000129066
Disease:Gastroenteritis 0.0003637913
Endospores:No 0.009294038211
Endospores:Yes 0.0004388353
GC_Content_Range4:0-40 2.805e-263213
GC_Content_Range4:40-60 2.889e-1184224
GC_Content_Range4:60-100 0.001370346145
GC_Content_Range7:30-40 2.038e-183166
GC_Content_Range7:50-60 3.170e-1152107
GC_Content_Range7:60-70 0.001568243134
Genome_Size_Range5:0-2 5.894e-1010155
Genome_Size_Range5:2-4 0.000124328197
Genome_Size_Range5:4-6 8.459e-1478184
Genome_Size_Range9:1-2 5.458e-710128
Genome_Size_Range9:2-3 0.000751615120
Genome_Size_Range9:4-5 8.592e-63996
Genome_Size_Range9:5-6 5.850e-73988
Genome_Size_Range9:6-8 0.00806641538
Gram_Stain:Gram_Neg 1.163e-10107333
Gram_Stain:Gram_Pos 5.142e-812150
Habitat:Host-associated 0.001152433206
Habitat:Multiple 0.001543254178
Motility:No 1.669e-713151
Motility:Yes 9.094e-785267
Oxygen_Req:Aerobic 1.571e-621185
Oxygen_Req:Facultative 5.688e-872201
Shape:Coccus 0.0000136582
Shape:Rod 5.316e-8105347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 437
Effective number of orgs (counting one per cluster within 468 clusters): 335

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-11
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPRO298386 ncbi Photobacterium profundum SS91
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G6847   EG11857   EG11799   EG11228   EG10233   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TFUS269800
TERY203124
TELO197221
TDEN243275
TCRU317025
TACI273075
STRO369723
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMED366394
SMAR399550 SMAR_1056
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SELO269084
SDEN318161
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808 ROSERS_1792
RSOL267608
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPAL316058
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFEL315456
REUT264198
RETL347834
RCON272944
RCAS383372 RCAS_2172
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283
PSYR205918
PSP56811
PSP312153
PSP296591
PRUM264731
PPRO298386 PBPRA1260
PPEN278197
PNAP365044
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARC259536
OTSU357244
OIHE221109
NWIN323098
NSP103690
NSEN222891
NPHA348780 NP2584A
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP400668
MSP266779
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_0423
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM205914 HS_0899
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMOD498761 HM1_1737
HHEP235279
HCHE349521
HAUR316274
HACI382638
GVIO251221
GTHE420246
GOXY290633
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DRAD243230
DPSY177439
DNOD246195
DGEO319795
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_2241
CSUL444179
CSP78
CSAL290398
CRUT413404 RMAG_0860
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKLU431943
CJEJ360109
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CAULO
CACE272562
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSUI470137
BSUI204722
BSUB
BSP376
BSP107806
BQUI283165
BPUM315750
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010
BJAP224911
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179
BBUR224326
BBRO257310 BB1245
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP1667
APHA212042
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFER243159
ACEL351607
ABUT367737
ABOR393595
AAVE397945 AAVE_0662
AAUR290340


Organism features enriched in list (features available for 406 out of the 437 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00001918092
Disease:gastroenteritis 4.339e-6113
Endospores:Yes 0.00048694753
GC_Content_Range4:0-40 2.290e-23198213
GC_Content_Range4:40-60 7.855e-10123224
GC_Content_Range4:60-100 0.000193584145
GC_Content_Range7:0-30 1.733e-84747
GC_Content_Range7:30-40 3.200e-14151166
GC_Content_Range7:50-60 6.603e-949107
GC_Content_Range7:60-70 0.000234777134
Genome_Size_Range5:0-2 1.116e-9136155
Genome_Size_Range5:2-4 0.0004068154197
Genome_Size_Range5:4-6 1.089e-1291184
Genome_Size_Range5:6-10 0.00578312547
Genome_Size_Range9:0-1 0.00054742627
Genome_Size_Range9:1-2 1.137e-6110128
Genome_Size_Range9:3-4 0.00836846277
Genome_Size_Range9:4-5 1.780e-64796
Genome_Size_Range9:5-6 0.00001394488
Gram_Stain:Gram_Neg 6.252e-10199333
Gram_Stain:Gram_Pos 7.004e-11134150
Habitat:Host-associated 0.0002858161206
Motility:No 0.0000123125151
Motility:Yes 1.234e-6160267
Optimal_temp.:30-37 0.00131981818
Oxygen_Req:Aerobic 0.0000287149185
Oxygen_Req:Facultative 0.0000670120201
Shape:Coccus 1.694e-67482
Shape:Rod 4.771e-6218347
Shape:Sphere 0.00785561819



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 7
Effective number of orgs (counting one per cluster within 468 clusters): 7

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HBUT415426 ncbi Hyperthermus butylicus DSM 5456 0.00028442805
PISL384616 ncbi Pyrobaculum islandicum DSM 4184 0.00057473225
TPEN368408 ncbi Thermofilum pendens Hrk 5 0.00081313455
PAER178306 ncbi Pyrobaculum aerophilum IM2 0.00086163495
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF8 0.00092553545
PARS340102 ncbi Pyrobaculum arsenaticum DSM 13514 0.00102133615
TKOD69014 ncbi Thermococcus kodakarensis KOD1 0.00372334675


Names of the homologs of the genes in the group in each of these orgs
  G6847   EG11857   EG11799   EG11228   EG10233   
HBUT415426 HBUT_1052HBUT_1052HBUT_1052HBUT_1052HBUT_1052
PISL384616 PISL_1995PISL_1995PISL_1995PISL_1995PISL_1995
TPEN368408 TPEN_0189TPEN_1409TPEN_1122TPEN_1409TPEN_1409
PAER178306 PAE1263PAE2661PAE2860PAE2661PAE1263
CKOR374847 KCR_0761KCR_0761KCR_0761KCR_0761KCR_0761
PARS340102 PARS_0953PARS_0953PARS_0937PARS_0953PARS_0953
TKOD69014 TK2075TK2075TK2075TK2075TK2075


Organism features enriched in list (features available for 7 out of the 7 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
GC_Content_Range4:40-60 0.00116597224
GC_Content_Range7:50-60 0.00274345107
Habitat:Specialized 0.0016492453
Optimal_temp.:100 0.000368223
Oxygen_Req:Anaerobic 0.00014786102
Temp._range:Hyperthermophilic 1.202e-6523



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301110.4768
GALACTITOLCAT-PWY (galactitol degradation)73560.4760
AST-PWY (arginine degradation II (AST pathway))120750.4715
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176930.4601
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181050.4556
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195950.4281
GLYCOCAT-PWY (glycogen degradation I)2461080.4189
ECASYN-PWY (enterobacterial common antigen biosynthesis)191920.4129
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212980.4125
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45370.4015



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11857   EG11799   EG11228   EG10233   
G68470.9991410.9990360.9993250.999806
EG118570.999620.9998070.999223
EG117990.9995970.999126
EG112280.999389
EG10233



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PAIRWISE BLAST SCORES:

  G6847   EG11857   EG11799   EG11228   EG10233   
G68470.0f0-8.2e-245.0e-243.1e-111
EG118571.2e-220.0f06.4e-245.9e-1242.5e-22
EG117998.2e-246.4e-240.0f03.9e-241.0e-23
EG112285.0e-241.7e-1283.9e-240.0f02.4e-24
EG102333.1e-111--2.4e-240.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-1355 (formate to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.200, degree of match cand to pw: 0.400, average score: 0.730)
  Genes in pathway or complex:
             0.9986 0.9974 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9996 0.9993 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.9985 0.9968 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9996 0.9991 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.6076 0.3552 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
             0.7191 0.4894 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
             0.6723 0.4004 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.6436 0.2155 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9991 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
   *in cand* 0.9995 0.9990 EG11799 (hybA) HYBA-MONOMER (hydrogenase 2 4Fe-4S ferredoxin-type component)
   *in cand* 0.9995 0.9990 G6847 (ynfG) G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)

- PWY0-1321 (formate to nitrate electron transfer) (degree of match pw to cand: 0.167, degree of match cand to pw: 0.400, average score: 0.844)
  Genes in pathway or complex:
             0.9986 0.9974 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9996 0.9993 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.9985 0.9968 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9996 0.9991 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.8384 0.3695 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
             0.9919 0.9734 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
             0.7884 0.3900 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
             0.8149 0.3478 EG10644 (narV) NARV-MONOMER (nitrate reductase Z, γ subunit)
             0.8087 0.3193 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
             0.9905 0.9666 EG10647 (narY) NARY-MONOMER (nitrate reductase Z, β subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9991 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
   *in cand* 0.9995 0.9990 EG11799 (hybA) HYBA-MONOMER (hydrogenase 2 4Fe-4S ferredoxin-type component)
   *in cand* 0.9995 0.9990 G6847 (ynfG) G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)

- PWY0-1356 (formate to dimethyl sulfoxide electron transfer) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.600, average score: 0.903)
  Genes in pathway or complex:
             0.9986 0.9974 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9996 0.9993 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.9985 0.9968 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9996 0.9991 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.9467 0.8879 EG10234 (dmsC) DMSC-MONOMER (dimethyl sulfoxide reductase, chain C)
   *in cand* 0.9995 0.9991 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
             0.9364 0.8625 EG10232 (dmsA) DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9990 EG11799 (hybA) HYBA-MONOMER (hydrogenase 2 4Fe-4S ferredoxin-type component)
   *in cand* 0.9995 0.9990 G6847 (ynfG) G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6847 (centered at G6847)
EG11857 (centered at EG11857)
EG11799 (centered at EG11799)
EG11228 (centered at EG11228)
EG10233 (centered at EG10233)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6847   EG11857   EG11799   EG11228   EG10233   
160/623166/623152/623164/623167/623
AAEO224324:0:Tyes136000136
AAVE397945:0:Tyes----0
ABAC204669:0:Tyes20890339702089
ABAU360910:0:Tyes00000
ACAU438753:0:Tyes-000-
ACRY349163:8:Tyes00000
ADEH290397:0:Tyes346331103311346
AEHR187272:0:Tyes10341034010341034
AFUL224325:0:Tyes0-0-2180
AHYD196024:0:Tyes740000740
AMET293826:0:Tyes0--00
APER272557:0:Tyes0--00
APLE416269:0:Tyes81704400817
APLE434271:0:Tno84204550842
ASAL382245:5:Tyes518000518
ASP232721:2:Tyes-00--
ASP62928:0:Tyes0---0
ASP76114:2:Tyes01202120212022716
BAMB339670:2:Tno00000
BAMB398577:2:Tno00000
BBRO257310:0:Tyes0----
BCEN331271:1:Tno00000
BCEN331272:2:Tyes00000
BMAL243160:0:Tno0000344
BMAL320388:0:Tno6066066066060
BMAL320389:0:Tyes00001729
BPSE272560:0:Tyes0000637
BPSE320372:0:Tno0000836
BPSE320373:0:Tno0000819
BSP36773:1:Tyes09797970
BTHA271848:0:Tno00000
BVIE269482:6:Tyes00000
BXEN266265:1:Tyes785000785
CCHL340177:0:Tyes0---0
CCON360104:2:Tyes0-201-0
CCUR360105:0:Tyes0---0
CDES477974:0:Tyes0547547547547
CHYD246194:0:Tyes17200001720
CJEJ354242:2:Tyes00--0
CJEJ407148:0:Tno00--0
CKOR374847:0:Tyes00000
CRUT413404:0:Tyes--0--
CSP501479:7:Fyes-0-0-
CSP501479:8:Fyes0---0
CTEP194439:0:Tyes--0--
CVES412965:0:Tyes0---0
CVIO243365:0:Tyes00000
DARO159087:0:Tyes760021580760
DDES207559:0:Tyes3068068430
DETH243164:0:Tyes00000
DHAF138119:0:Tyes02781439827810
DOLE96561:0:Tyes01149208111490
DRED349161:0:Tyes-06520-
DSHI398580:5:Tyes00000
DSP216389:0:Tyes00000
DSP255470:0:Tno00000
DVUL882:1:Tyes-1934019340
ECAR218491:0:Tyes1901900190190
ECOL199310:0:Tno913373726438420
ECOL316407:0:Tno706248721065930
ECOL331111:6:Tno792331923936600
ECOL362663:0:Tno0318821745630
ECOL364106:1:Tno807349524467220
ECOL405955:2:Tyes7043142226431420
ECOL409438:6:Tyes761328823656150
ECOL413997:0:Tno645289719775280
ECOL439855:4:Tno02581161987609
ECOL469008:0:Tno13223385014211947
ECOL481805:0:Tno13503443014862004
ECOL585034:0:Tno692310521745360
ECOL585035:0:Tno675329423576120
ECOL585055:0:Tno811338624396690
ECOL585056:2:Tno781332423846380
ECOL585057:0:Tno016292013272763
ECOL585397:0:Tno792357426396770
ECOL83334:0:Tno13393935296611150
ECOLI:0:Tno720306521586020
ECOO157:0:Tno1278385428729240
EFER585054:1:Tyes26602376144902660
ESP42895:1:Tyes026926366360
GMET269799:1:Tyes00000
GSUL243231:0:Tyes00500
GURA351605:0:Tyes14331420014201433
HARS204773:0:Tyes00000
HBUT415426:0:Tyes00000
HDUC233412:0:Tyes-0-0-
HHAL349124:0:Tyes00-00
HINF281310:0:Tyes10960001096
HINF374930:0:Tyes-000-
HINF71421:0:Tno10150001015
HMAR272569:8:Tyes0---0
HMOD498761:0:Tyes--0--
HMUK485914:1:Tyes0---0
HSOM205914:1:Tyes-0---
HSOM228400:0:Tno-0-0-
JSP290400:1:Tyes-000-
KPNE272620:2:Tyes43072528430704307
KRAD266940:2:Fyes00-00
MAVI243243:0:Tyes---0-
MCAP243233:0:Tyes00000
MLOT266835:2:Tyes00000
MMAG342108:0:Tyes00000
MPET420662:1:Tyes00000
MSED399549:0:Tyes0---0
MSME246196:0:Tyes00-0-
MSP164756:1:Tno00-00
MSP164757:0:Tno00-00
MSP189918:2:Tyes00-00
MSP409:2:Tyes00000
MSUC221988:0:Tyes-013700-
MTHE264732:0:Tyes916000916
NPHA348780:2:Tyes0----
NSP35761:1:Tyes0--00
NSP387092:0:Tyes0385--0
OANT439375:4:Tyes-000-
OCAR504832:0:Tyes-1605160500
PABY272844:0:Tyes0---0
PACN267747:0:Tyes00000
PAER178306:0:Tyes01025116610250
PAER208963:0:Tyes-000-
PAER208964:0:Tno00000
PARS340102:0:Tyes161601616
PENT384676:0:Tyes00000
PFLU205922:0:Tyes-0000
PISL384616:0:Tyes00000
PLUM243265:0:Fyes-000-
PLUT319225:0:Tyes0---0
PMUL272843:1:Tyes13480001348
PPRO298386:2:Tyes0----
PPUT160488:0:Tno-0000
PPUT351746:0:Tyes-0000
PPUT76869:0:Tno-0000
PSP117:0:Tyes0-0-0
PSTU379731:0:Tyes-0000
PTHE370438:0:Tyes-10010-
RCAS383372:0:Tyes-0---
RDEN375451:4:Tyes-0-0-
REUT381666:1:Tyes-0000
RFER338969:1:Tyes-1296129612960
RPAL316057:0:Tyes0---0
RPOM246200:1:Tyes-0-0-
RSP101510:0:Fyes---00
RSP357808:0:Tyes-0---
RXYL266117:0:Tyes-1506150615060
SACI56780:0:Tyes02265226522650
SBAL399599:3:Tyes21660002166
SBAL402882:1:Tno24710002471
SBOY300268:1:Tyes02209121700
SDEG203122:0:Tyes0--00
SDYS300267:1:Tyes021241413300
SENT209261:0:Tno01555105415550
SENT220341:0:Tno02624212526240
SENT295319:0:Tno5524791654055
SENT321314:2:Tno0305622036570
SENT454169:2:Tno025841660770
SERY405948:0:Tyes-0-0-
SFLE198214:0:Tyes712299320838410
SFLE373384:0:Tno678257520518120
SFUM335543:0:Tyes32190110203219
SHAL458817:0:Tyes09393930
SHIGELLA:0:Tno729250920228550
SLAC55218:1:Fyes-0-0-
SLOI323850:0:Tyes03001115-0
SMAR399550:0:Tyes0----
SMEL266834:0:Tyes-000-
SONE211586:1:Tyes41920004192
SPEA398579:0:Tno35490003549
SPRO399741:1:Tyes16500289401650
SSED425104:0:Tyes125280502660125
SSOL273057:0:Tyes0---0
SSON300269:1:Tyes646300321327150
SSP387093:0:Tyes0---0
SSP94122:1:Tyes548205320530548
STHE292459:0:Tyes07962797960
STOK273063:0:Tyes0---0
STYP99287:1:Tyes0304721675940
SWOL335541:0:Tyes10030001003
TDEN292415:0:Tyes00000
TDEN326298:0:Tyes0---0
TKOD69014:0:Tyes00000
TPEN368408:1:Tyes0120792112071207
TROS309801:0:Tyes0---0
TROS309801:1:Tyes-000-
TTHE262724:1:Tyes0---0
VEIS391735:1:Tyes00000
VFIS312309:1:Tyes00-00
VPAR223926:1:Tyes047904790
VVUL196600:2:Tyes9720000
VVUL216895:1:Tno00000
WSUC273121:0:Tyes452000452
XAUT78245:1:Tyes-000-
YENT393305:1:Tyes-5210521-
YPES187410:5:Tno03235323532350
YPES214092:3:Tno07287287280
YPES349746:2:Tno02780278027800
YPES360102:3:Tyes02102102100
YPES377628:2:Tno02992299229920
YPES386656:2:Tno29950002995
YPSE273123:2:Tno03135313531350
YPSE349747:2:Tno08488488480



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