CANDIDATE ID: 706

CANDIDATE ID: 706

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9911330e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- M004 (rpe) (b3386)
   Products of gene:
     - RIBULP3EPIM-MONOMER (ribulose phosphate 3-epimerase)
       Reactions:
        D-ribulose-5-phosphate  =  D-xylulose-5-phosphate
         In pathways
         PWY-5257 (PWY-5257)
         PENTOSE-P-PWY (pentose phosphate pathway)
         PHOTOALL-PWY (PHOTOALL-PWY)
         DARABCAT-PWY (DARABCAT-PWY)
         RIBITOLUTIL-PWY (RIBITOLUTIL-PWY)
         P122-PWY (P122-PWY)
         P21-PWY (P21-PWY)
         PWY-1861 (PWY-1861)
         P185-PWY (P185-PWY)
         P124-PWY (P124-PWY)
         NONOXIPENT-PWY (pentose phosphate pathway (non-oxidative branch))
         PWY-5723 (PWY-5723)
         CALVIN-PWY (CALVIN-PWY)

- EG11957 (alsE) (b4085)
   Products of gene:
     - EG11957-MONOMER (allulose-6-phosphate 3-epimerase)
       Reactions:
        D-allulose-6-phosphate  ->  D-fructose-6-phosphate
         In pathways
         PWY0-44 (D-allose degradation)

- EG11871 (gph) (b3385)
   Products of gene:
     - GPH-MONOMER (phosphoglycolate phosphatase)
       Reactions:
        2-phosphoglycolate + H2O  ->  glycolate + phosphate
         In pathways
         PWY-181 (PWY-181)

- EG11030 (trpS) (b3384)
   Products of gene:
     - TRPS-MONOMER (tryptophanyl-tRNA synthetase)
     - TRPS-CPLX (tryptophanyl-tRNA synthetase)
       Reactions:
        L-tryptophan + tRNAtrp + ATP  ->  L-tryptophanyl-tRNAtrp + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10204 (dam) (b3387)
   Products of gene:
     - EG10204-MONOMER (DNA adenine methylase)
       Reactions:
        a DNA adenine + S-adenosyl-L-methionine  =  a DNA 6-methylaminopurine + S-adenosyl-L-homocysteine



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 205
Effective number of orgs (counting one per cluster within 468 clusters): 147

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XAUT78245 ncbi Xanthobacter autotrophicus Py24
WSUC273121 ncbi Wolinella succinogenes DSM 17405
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TFUS269800 ncbi Thermobifida fusca YX4
TERY203124 ncbi Trichodesmium erythraeum IMS1014
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSP644076 Silicibacter sp. TrichCH4B5
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSP292414 ncbi Ruegeria sp. TM10405
SSP1148 ncbi Synechocystis sp. PCC 68034
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SALA317655 ncbi Sphingopyxis alaskensis RB22564
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RMET266264 ncbi Ralstonia metallidurans CH344
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSTU379731 ncbi Pseudomonas stutzeri A15014
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NSP387092 ncbi Nitratiruptor sp. SB155-24
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MMAR394221 ncbi Maricaulis maris MCS104
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAER449447 ncbi Microcystis aeruginosa NIES-8434
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LMON169963 ncbi Listeria monocytogenes EGD-e4
LINN272626 ncbi Listeria innocua Clip112624
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HNEP81032 Hyphomonas neptunium4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255864
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPER289380 ncbi Clostridium perfringens SM1014
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10624
CJEJ195099 ncbi Campylobacter jejuni RM12214
CJAP155077 Cellvibrio japonicus4
CFET360106 ncbi Campylobacter fetus fetus 82-404
CCUR360105 ncbi Campylobacter curvus 525.924
CCON360104 ncbi Campylobacter concisus 138264
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BHAL272558 ncbi Bacillus halodurans C-1255
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L4
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP62928 ncbi Azoarcus sp. BH724
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110174
ALAI441768 ncbi Acholeplasma laidlawii PG-8A4
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
ACRY349163 ncbi Acidiphilium cryptum JF-54
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  M004   EG11957   EG11871   EG11030   EG10204   
ZMOB264203 ZMO0018ZMO0018ZMO0497ZMO1640
YPSE349747 YPSIP31758_3962YPSIP31758_3962YPSIP31758_3961YPSIP31758_3960YPSIP31758_3963
YPSE273123 YPTB3746YPTB3746YPTB3745YPTB3744YPTB3747
YPES386656 YPDSF_0082YPDSF_0082YPDSF_0083YPDSF_0084YPDSF_0081
YPES377628 YPN_3910YPN_3910YPN_3909YPN_3908YPN_3911
YPES360102 YPA_3314YPA_3314YPA_3313YPA_3312YPA_3315
YPES349746 YPANGOLA_A3723YPANGOLA_A3723YPANGOLA_A3722YPANGOLA_A3721YPANGOLA_A3724
YPES214092 YPO0155YPO0155YPO0156YPO0157YPO0154
YPES187410 Y3938Y3938Y3939Y3940Y3937
YENT393305 YE3971YE3971YE3970YE3969YE3972
XAUT78245 XAUT_1911XAUT_1911XAUT_3219XAUT_3085
WSUC273121 WS0219WS0219WS2133WS0311WS1405
VVUL216895 VV1_1386VV1_1306VV1_1307VV1_1385
VVUL196600 VV2985VV3059VV3058VV2986
VPAR223926 VP2741VP2741VP2805VP2804VP2742
VFIS312309 VF2288VF2288VF2287VF2286VF2289
VCHO345073 VC0395_A2202VC0395_A2201VC0395_A2200VC0395_A2203
VCHO VC2625VC2624VC2623VC2626
TTEN273068 TTE1498TTE1498TTE2216TTE1453
TSP1755 TETH514_1747TETH514_1747TETH514_0927TETH514_1704TETH514_0458
TPSE340099 TETH39_1311TETH39_1311TETH39_0448TETH39_1268TETH39_1777
TFUS269800 TFU_1077TFU_1077TFU_1824TFU_2376
TERY203124 TERY_2606TERY_2606TERY_4693TERY_3905
TELO197221 TLL2369TLL2369TLR1996TLR1640
TDEN292415 TBD_2230TBD_2230TBD_2229TBD_1525
STYP99287 STM3483STM3483STM3482STM3481STM3484
SSP94122 SHEWANA3_3888SHEWANA3_3888SHEWANA3_3887SHEWANA3_3886SHEWANA3_3891
SSP644076 SCH4B_0617SCH4B_0617SCH4B_4051SCH4B_1288SCH4B_2042
SSP321332 CYB_2047CYB_2047CYB_2214CYB_2715
SSP321327 CYA_0084CYA_0084CYA_1340CYA_0956
SSP292414 TM1040_3710TM1040_3710TM1040_0729TM1040_0443TM1040_1587
SSP1148 SLL0807SLL0807SLR1884SLR1803
SSON300269 SSO_3517SSO_3517SSO_3516SSO_3515SSO_3518
SSED425104 SSED_4259SSED_4259SSED_4258SSED_4257SSED_4262
SPRO399741 SPRO_4601SPRO_4601SPRO_4600SPRO_4599SPRO_4602
SPEA398579 SPEA_0244SPEA_0245SPEA_0246SPEA_0241
SONE211586 SO_0292SO_0292SO_0293SO_0294SO_0289
SMEL266834 SMB20195SMB20195SMC00151SMC01121
SMED366394 SMED_3927SMED_3927SMED_1574SMED_0034
SLOI323850 SHEW_0219SHEW_0219SHEW_0220SHEW_0221SHEW_0216
SLAC55218 SL1157_0319SL1157_0319SL1157_0436SL1157_0593
SHIGELLA RPERPEGPHTRPSDAM
SHAL458817 SHAL_4076SHAL_4075SHAL_4074SHAL_4079
SGLO343509 SG2305SG2305SG2304SG2306
SFLE373384 SFV_3391SFV_3391SFV_3390SFV_3389SFV_3392
SFLE198214 AAN44866.1AAN44866.1AAN44865.1AAN44864.1AAN44867.1
SENT454169 SEHA_C3789SEHA_C3789SEHA_C3788SEHA_C3787SEHA_C3790
SENT321314 SCH_3415SCH_3415SCH_3414SCH_3413SCH_3416
SENT295319 SPA3348SPA3348SPA3347SPA3346SPA3349
SENT220341 STY4313STY4313STY4314STY4315STY4312
SENT209261 T4023T4023T4025T4024T4022
SDYS300267 SDY_3693SDY_3693SDY_3694SDY_3695SDY_3692
SDEN318161 SDEN_0267SDEN_0267SDEN_0268SDEN_0269SDEN_0264
SDEG203122 SDE_0746SDE_0746SDE_2151SDE_2228
SBOY300268 SBO_3373SBO_3373SBO_3372SBO_3371SBO_3374
SBAL402882 SHEW185_4077SHEW185_4077SHEW185_4076SHEW185_4075SHEW185_4081
SBAL399599 SBAL195_4195SBAL195_4195SBAL195_4194SBAL195_4193SBAL195_4199
SALA317655 SALA_3128SALA_3128SALA_1371SALA_2013
RSPH349101 RSPH17029_1430RSPH17029_2937RSPH17029_0455RSPH17029_3376
RSPH272943 RSP_2864RSP_1278RSP_1808RSP_3635
RSOL267608 RSC2879RSC2879RSC0581RSC1143
RRUB269796 RRU_A2402RRU_A2402RRU_A3031RRU_A3535
RPAL316056 RPC_1614RPC_1614RPC_2075RPC_0459
RMET266264 RMET_3176RMET_3176RMET_0710RMET_5483
PTHE370438 PTH_1779PTH_1779PTH_2056PTH_1238PTH_1936
PSYR223283 PSPTO_0566PSPTO_0566PSPTO_0567PSPTO_3388
PSTU379731 PST_0742PST_0742PST_0743PST_3630
PPUT76869 PPUTGB1_0446PPUTGB1_0446PPUTGB1_0447PPUTGB1_4538PPUTGB1_1221
PPUT351746 PPUT_0449PPUT_0449PPUT_0450PPUT_4413
PPUT160488 PP_0415PP_0415PP_0416PP_1311
PPRO298386 PBPRA0284PBPRA0285PBPRA0286PBPRA0283
PMUL272843 PM1619PM1619PM1620PM1621PM1222
PLUM243265 PLU0086PLU0086PLU0085PLU0084PLU0087
PING357804 PING_0167PING_0167PING_1410PING_0168PING_0166
PHAL326442 PSHAA2710PSHAA1419PSHAA2708PSHAA2712
PFLU216595 PFLU5563PFLU5563PFLU5562PFLU0834
PFLU205922 PFL_5120PFL_5120PFL_5119PFL_4699
PENT384676 PSEEN0442PSEEN0442PSEEN0443PSEEN4511
PCAR338963 PCAR_0240PCAR_0240PCAR_2242PCAR_0588
PATL342610 PATL_0659PATL_0659PATL_2472PATL_0658PATL_0663
OIHE221109 OB1511OB1511OB2479OB1208
OANT439375 OANT_2376OANT_2376OANT_2091OANT_0155
NSP387092 NIS_0320NIS_0199NIS_1370NIS_1262
NSP103690 ALR0782ALR0782ALL1269ALL0061
NOCE323261 NOC_2492NOC_2492NOC_2493NOC_0344
NMEN374833 NMCC_1125NMCC_1125NMCC_1390NMCC_1383NMCC_0325
NMEN272831 NMC1145NMC1145NMC1414NMC1408NMC0327
NMEN122587 NMA1413NMA1413NMA1688NMA1682NMA0561
NMEN122586 NMB_1244NMB_1244NMB_0620NMB_1471NMB_1895
NHAM323097 NHAM_2620NHAM_2620NHAM_1479NHAM_0012
NGON242231 NGO0758NGO0758NGO1052NGO1045NGO0007
NARO279238 SARO_0104SARO_0104SARO_1198SARO_0588
MSUC221988 MS2330MS2330MS2331MS2332MS1967
MSP400668 MMWYL1_1057MMWYL1_1057MMWYL1_1058MMWYL1_3230
MSP266779 MESO_0005MESO_0005MESO_1458MESO_4035
MMAR394221 MMAR10_2925MMAR10_2925MMAR10_0969MMAR10_3024
MLOT266835 MLR4760MLR4760MLR0528MLL5317
MFLA265072 MFLA_2472MFLA_2472MFLA_1575MFLA_2682
MCAP243233 MCA_2582MCA_2582MCA_2583MCA_2526
MAER449447 MAE_61690MAE_61690MAE_24310MAE_18940
LSPH444177 BSPH_1495BSPH_1495BSPH_0436BSPH_1215BSPH_0494
LMON169963 LMO1818LMO1818LMO2198LMO2316
LINN272626 LIN1932LIN1932LIN2301LIN0088
KPNE272620 GKPORF_B3098GKPORF_B3098GKPORF_B3097GKPORF_B3096GKPORF_B3099
JSP375286 MMA_0237MMA_0237MMA_0236MMA_3447
ILOI283942 IL2324IL2324IL1362IL2323IL2475
HSOM228400 HSM_0042HSM_0559HSM_0043HSM_0044HSM_1064
HSOM205914 HS_0175HS_0175HS_0176HS_0177HS_1115
HNEP81032 HNE_3370HNE_3370HNE_0704HNE_0520
HMOD498761 HM1_2140HM1_2140HM1_1613HM1_1715
HINF71421 HI_0566HI_0566HI_0565HI_0637HI_0209
HINF374930 CGSHIEE_00135CGSHIEE_00135CGSHIEE_00140CGSHIEE_09035
HINF281310 NTHI0698NTHI0698NTHI0697NTHI0755NTHI0307
HHAL349124 HHAL_1048HHAL_1048HHAL_2083HHAL_0584
HDUC233412 HD_1929HD_1929HD_0176HD_0177HD_0420
HCHE349521 HCH_06112HCH_06112HCH_06113HCH_02552
HAUR316274 HAUR_2292HAUR_0384HAUR_0220HAUR_4539
GVIO251221 GLL3548GLL3548GLR3011GLR2709
GTHE420246 GTNG_1031GTNG_1031GTNG_3029GTNG_0689GTNG_2051
GMET269799 GMET_0067GMET_0067GMET_2290GMET_3140
GKAU235909 GK1178GK1178GK3079GK0809GKP08
GBET391165 GBCGDNIH1_2141GBCGDNIH1_2141GBCGDNIH1_1240GBCGDNIH1_2415
FPHI484022 FPHI_1467FPHI_1467FPHI_0258FPHI_1142
FNUC190304 FN0680FN0680FN0405FN1923
ESP42895 ENT638_3799ENT638_3799ENT638_3798ENT638_3797ENT638_3800
ELIT314225 ELI_12550ELI_12550ELI_08820ELI_10510
EFER585054 EFER_3352EFER_4285EFER_3351EFER_3350EFER_3353
ECOO157 RPERPEGPHTRPSDAM
ECOL83334 ECS4228ECS4228ECS4227ECS4226ECS4229
ECOL585397 ECED1_4044ECED1_4819ECED1_4043ECED1_4042ECED1_4045
ECOL585057 ECIAI39_3864ECIAI39_4509ECIAI39_3863ECIAI39_3862ECIAI39_3865
ECOL585056 ECUMN_3844ECUMN_3844ECUMN_3843ECUMN_3842ECUMN_3845
ECOL585055 EC55989_3791EC55989_3791EC55989_3790EC55989_3789EC55989_3792
ECOL585035 ECS88_3771ECS88_4585ECS88_3770ECS88_3769ECS88_3772
ECOL585034 ECIAI1_3524ECIAI1_3524ECIAI1_3523ECIAI1_3522ECIAI1_3525
ECOL481805 ECOLC_0327ECOLC_3941ECOLC_0328ECOLC_0329ECOLC_0326
ECOL469008 ECBD_0361ECBD_3945ECBD_0362ECBD_0363ECBD_0360
ECOL439855 ECSMS35_3662ECSMS35_4551ECSMS35_3661ECSMS35_3660ECSMS35_3663
ECOL413997 ECB_03238ECB_03957ECB_03237ECB_03236ECB_03239
ECOL409438 ECSE_3647ECSE_4383ECSE_3646ECSE_3645ECSE_3648
ECOL405955 APECO1_3077APECO1_2365APECO1_3078APECO1_3079APECO1_3076
ECOL364106 UTI89_C3884UTI89_C4681UTI89_C3883UTI89_C3882UTI89_C3885
ECOL362663 ECP_3471ECP_4327ECP_3470ECP_3469ECP_3472
ECOL331111 ECE24377A_3855ECE24377A_3855ECE24377A_3854ECE24377A_3853ECE24377A_3857
ECOL316407 ECK3373:JW3349:B3386ECK4078:JW4046:B4085ECK3372:JW3348:B3385ECK3371:JW3347:B3384ECK3374:JW3350:B3387
ECOL199310 C4156C5091C4155C4154C4157
ECAR218491 ECA4089ECA4089ECA4088ECA4087ECA4090
DPSY177439 DP0795DP0795DP2134DP1644
DOLE96561 DOLE_2229DOLE_2229DOLE_2757DOLE_0821
DHAF138119 DSY2683DSY2683DSY1052DSY0234
DARO159087 DARO_3483DARO_3483DARO_3482DARO_2459
CVIO243365 CV_2182CV_2182CV_2180CV_2111
CSP78 CAUL_4780CAUL_4780CAUL_3547CAUL_0012
CSAL290398 CSAL_2328CSAL_2328CSAL_2324CSAL_1368
CPSY167879 CPS_0479CPS_0479CPS_0261CPS_0480CPS_0475
CPER289380 CPR_1707CPR_1707CPR_0600CPR_C0051
CPEL335992 SAR11_0317SAR11_0317SAR11_1153SAR11_0377
CJEJ195099 CJE_0501CJE_0501CJE_0437CJE_0220
CJAP155077 CJA_2666CJA_2666CJA_2129CJA_2080
CFET360106 CFF8240_0861CFF8240_0861CFF8240_0391CFF8240_1341
CCUR360105 CCV52592_0725CCV52592_0725CCV52592_0914CCV52592_1188
CCON360104 CCC13826_1342CCC13826_1342CCC13826_0740CCC13826_0775
CACE272562 CAC1730CAC1730CAC0632CAC0626CAC3358
BXEN266265 BXE_B2446BXE_B2446BXE_B2479BXE_C0463
BWEI315730 BCERKBAB4_3683BCERKBAB4_3683BCERKBAB4_4954BCERKBAB4_1087
BTHU412694 BALH_3491BALH_3491BALH_4653BALH_1041
BTHU281309 BT9727_3601BT9727_3601BT9727_4839BT9727_1081
BTHA271848 BTH_I2907BTH_I2907BTH_I1629BTH_I1923
BSUI470137 BSUIS_A0888BSUIS_A0888BSUIS_A0312BSUIS_A0143
BSUI204722 BR_0850BR_0850BR_0287BR_0142
BSUB BSU15790BSU15790BSU34970BSU11420
BSP376 BRADO2842BRADO2842BRADO0021BRADO0033
BPUM315750 BPUM_1478BPUM_1755BPUM_3134BPUM_1068
BPSE320372 BURPS1710B_A3856BURPS1710B_A3856BURPS1710B_A3251BURPS1710B_A1824
BOVI236 GBOORF0873GBOORF0873GBOORF0310GBOORF0145
BMEL359391 BAB1_0869BAB1_0869BAB1_0318BAB1_0141
BMEL224914 BMEI1116BMEI1116BMEI1634BMEI1806
BHAL272558 BH2502BH2502BH3587BH2870BH4003
BCLA66692 ABC2313ABC2313ABC0091ABC2535
BCER572264 BCA_3960BCA_3960BCA_5289BCA_1221
BCER405917 BCE_3902BCE_3902BCE_5265BCE_1297
BCER315749 BCER98_2512BCER98_2512BCER98_3704BCER98_0894BCER98_3991
BCER288681 BCE33L3619BCE33L3619BCE33L4527BCE33L1075
BCAN483179 BCAN_A0863BCAN_A0863BCAN_A0292BCAN_A0147
BBRO257310 BB4624BB4624BB4625BB3607
BANT592021 BAA_4022BAA_4022BAA_5420BAA_1265
BANT568206 BAMEG_0633BAMEG_0633BAMEG_5443BAMEG_3399
BANT261594 GBAA3998GBAA3998GBAA5390GBAA1188
BANT260799 BAS3711BAS3711BAS5010BAS1099
BAMY326423 RBAM_015620RBAM_015620RBAM_032170RBAM_011420
BAMB339670 BAMB_0441BAMB_0441BAMB_0440BAMB_1850
BABO262698 BRUAB1_0862BRUAB1_0862BRUAB1_0313BRUAB1_0139
AVAR240292 AVA_4675AVA_4675AVA_2993AVA_2663
ASP62928 AZO3327AZO3327AZO3326AZO3695
ASAL382245 ASA_1129ASA_1130ASA_1131ASA_1128
APLE434271 APJL_1856APJL_1856APJL_1936APJL_1935APJL_0193
APLE416269 APL_1820APL_1820APL_1893APL_1892APL_0192
AMET293826 AMET_2777AMET_2777AMET_1200AMET_2440
AMAR329726 AM1_1399AM1_1399AM1_1736AM1_3079
ALAI441768 ACL_0253ACL_1344ACL_1182ACL_1084
AHYD196024 AHA_3185AHA_3185AHA_3184AHA_3183AHA_3186
AFER243159 AFE_3086AFE_3086AFE_3087AFE_1517
ACRY349163 ACRY_0827ACRY_0022ACRY_2274ACRY_1020
ABAC204669 ACID345_0074ACID345_0074ACID345_1784ACID345_3860ACID345_1093
AAVE397945 AAVE_0438AAVE_0440AAVE_3711AAVE_4108


Organism features enriched in list (features available for 193 out of the 205 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.002780449112
Disease:Brucellosis 0.003839155
Disease:Bubonic_plague 0.001248766
Disease:Dysentery 0.001248766
Disease:Gastroenteritis 4.342e-71313
Endospores:No 1.294e-938211
Endospores:Yes 0.00969292553
GC_Content_Range4:0-40 5.527e-1136213
GC_Content_Range4:40-60 8.942e-15117224
GC_Content_Range7:0-30 6.499e-6347
GC_Content_Range7:30-40 5.364e-633166
GC_Content_Range7:40-50 0.002510451117
GC_Content_Range7:50-60 1.132e-1166107
Genome_Size_Range5:0-2 2.390e-1811155
Genome_Size_Range5:4-6 6.267e-18107184
Genome_Size_Range9:1-2 4.522e-1311128
Genome_Size_Range9:2-3 0.003122928120
Genome_Size_Range9:4-5 1.833e-75496
Genome_Size_Range9:5-6 9.146e-95388
Gram_Stain:Gram_Neg 8.613e-14151333
Gram_Stain:Gram_Pos 1.483e-725150
Habitat:Host-associated 0.000243850206
Habitat:Multiple 0.000408676178
Motility:No 7.284e-1514151
Motility:Yes 5.126e-10123267
Optimal_temp.:- 0.0008038102257
Optimal_temp.:35-37 0.00121241013
Oxygen_Req:Anaerobic 0.000028017102
Oxygen_Req:Facultative 4.506e-998201
Shape:Coccus 0.00003281282
Shape:Rod 1.649e-12153347
Temp._range:Hyperthermophilic 0.0009315123
Temp._range:Psychrophilic 0.006673579



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 159
Effective number of orgs (counting one per cluster within 468 clusters): 130

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE1313 Streptococcus pneumoniae1
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1291
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L11
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08031
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAFZ390236 ncbi Borrelia afzelii PKo0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  M004   EG11957   EG11871   EG11030   EG10204   
UURE95667 UU175
UURE95664 UUR10_0166
UPAR505682 UPA3_0182
UMET351160 LRC316
TWHI218496 TW0671
TWHI203267 TW686
TVOL273116 TVN0849
TPEN368408
TMAR243274 TM_1254
TLET416591
TKOD69014
TDEN243275 TDE_2597
TACI273075 TA0644
SWOL335541 SWOL_1223
STOK273063
STHE322159 STER_1769
STHE299768 STR1797
STHE264199 STU1797
SSUI391296 SSU98_1998
SSUI391295 SSU05_1993
SSOL273057
SPYO370554 MGAS10750_SPY0219
SPYO370553 MGAS2096_SPY0242
SPYO370552 MGAS10270_SPY0224
SPYO370551 MGAS9429_SPY0226
SPYO319701 M28_SPY0218
SPYO293653 M5005_SPY0224
SPYO286636 M6_SPY0256
SPYO198466 SPYM3_0192
SPYO193567 SPS0197
SPYO160490 SPY0264
SPNE1313 SPJ_1975
SMAR399550
SHAE279808 SH1962
SERY405948 SACE_6592
SAGA211110 GBS1819
SAGA208435 SAG_1776
SAGA205921 SAK_1758
SACI330779
RTYP257363 RT0455
RRIC452659 RRIOWA_0842
RRIC392021 A1G_04020
RPRO272947 RP468
RCON272944 RC0710
RCAN293613 A1E_02425
RAKA293614 A1C_03905
PTOR263820
PSP117 RB6436
PPEN278197 PEPE_0256
PMOB403833
PMAR93060 P9215_06801
PMAR74546 PMT9312_0598
PMAR59920 PMN2A_0034
PMAR167555 NATL1_06541
PMAR167546 P9301ORF_0639
PMAR167542 P9515ORF_0699
PMAR167540 PMM0598
PMAR167539 PRO_1063
PMAR146891 A9601_06541
PISL384616
PHOR70601 PH1032
PFUR186497
PARS340102
PAER178306
PACN267747
PABY272844
NPHA348780
NFAR247156 NFA9360
MTHE349307
MTHE187420
MSYN262723 MS53_0169
MSTA339860 MSP_0143
MSED399549
MPUL272635 MYPU_7450
MPNE272634 MPN265
MMYC272632 MSC_0358
MMAZ192952
MMAR444158 MMARC6_0151
MMAR426368 MMARC7_1756
MMAR402880 MMARC5_0847
MMAR368407 MEMAR_0517
MMAR267377 MMP0735
MLAB410358 MLAB_1212
MKAN190192
MJAN243232 MJ_0598
MHUN323259 MHUN_1945
MGEN243273 MG_126
MFLO265311 MFL192
MBUR259564
MBAR269797
MART243272 MART0600
MAEO419665
MACE188937
LXYL281090 LXX04450
LREU557436 LREU_1167
LPLA220668 LP_1621
LJOH257314
LINT363253 LI0652
LINT267671 LIC_10357
LINT189518 LA0408
LHEL405566 LHV_1214
LGAS324831
LDEL390333
LDEL321956
LBOR355277 LBJ_1937
LBOR355276 LBL_1347
LBIF456481
LBIF355278
LACI272621
KRAD266940 KRAD_3969
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP1174
HPY HP1253
HMUK485914 HMUK_0465
HMAR272569
HBUT415426
HACI382638 HAC_0232
GOXY290633 GOX1352
GFOR411154 GFO_3251
FNOD381764
FMAG334413 FMG_0669
FJOH376686 FJOH_0990
ERUM302409 ERGA_CDS_01050
ERUM254945 ERWE_CDS_01090
DSP216389 DEHABAV1_1154
DETH243164 DET_1343
CTRA471473
CTRA471472
CTEP194439 CT_0889
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMET456442 MBOO_1003
CMAQ397948
CKOR374847
CFEL264202
CCHL340177 CAG_0175
CCAV227941
CABO218497
BTUR314724 BT0463A
BTHE226186
BLON206672
BHER314723 BH0463A
BGAR290434
BFRA295405 BF3902
BFRA272559 BF3672
BBUR224326
BBAC264462 BD0379
BAFZ390236
AURANTIMONAS
APER272557
ANAE240017
AFUL224325


Organism features enriched in list (features available for 152 out of the 159 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000465216112
Disease:Leptospirosis 0.004486444
Disease:Pharyngitis 0.000018688
Disease:Wide_range_of_infections 9.590e-61011
Disease:bronchitis_and_pneumonitis 0.000018688
Endospores:No 2.329e-1291211
Endospores:Yes 9.970e-6253
GC_Content_Range4:0-40 2.315e-986213
GC_Content_Range4:60-100 4.738e-913145
GC_Content_Range7:30-40 8.889e-869166
GC_Content_Range7:40-50 0.008109040117
GC_Content_Range7:50-60 0.000071213107
GC_Content_Range7:60-70 9.793e-1010134
Genome_Size_Range5:0-2 3.595e-3096155
Genome_Size_Range5:4-6 3.649e-189184
Genome_Size_Range5:6-10 0.0013922447
Genome_Size_Range9:0-1 0.00062641527
Genome_Size_Range9:1-2 6.829e-2581128
Genome_Size_Range9:3-4 0.00384631177
Genome_Size_Range9:4-5 7.322e-8696
Genome_Size_Range9:5-6 1.890e-9388
Genome_Size_Range9:6-8 0.0031147338
Gram_Stain:Gram_Neg 2.390e-858333
Habitat:Host-associated 0.002646167206
Habitat:Multiple 1.026e-624178
Habitat:Specialized 0.00028142553
Habitat:Terrestrial 0.0042321231
Motility:Yes 0.000933854267
Optimal_temp.:- 0.002158453257
Optimal_temp.:85 0.004486444
Oxygen_Req:Aerobic 0.003571936185
Oxygen_Req:Anaerobic 7.109e-849102
Oxygen_Req:Facultative 0.003688540201
Shape:Coccus 0.00099123382
Shape:Irregular_coccus 3.200e-91617
Shape:Rod 2.231e-1254347
Shape:Spiral 0.00359141634
Temp._range:Hyperthermophilic 1.011e-81923
Temp._range:Mesophilic 0.0026432112473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181330.4388
GLUTDEG-PWY (glutamate degradation II)1941210.4217
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491420.4189
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491420.4189
GLYCOCAT-PWY (glycogen degradation I)2461390.4057
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651780.4015



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11957   EG11871   EG11030   EG10204   
M0040.9999910.9995650.9990130.999046
EG119570.9994590.9987670.998638
EG118710.9990080.998806
EG110300.99884
EG10204



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PAIRWISE BLAST SCORES:

  M004   EG11957   EG11871   EG11030   EG10204   
M0040.0f0----
EG119577.0e-340.0f0---
EG11871--0.0f0--
EG11030---0.0f0-
EG10204----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10204 EG11030 EG11871 M004 (centered at M004)
EG11957 (centered at EG11957)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  M004   EG11957   EG11871   EG11030   EG10204   
403/623363/623292/623401/623201/623
AAEO224324:0:Tyes00---
AAUR290340:2:Tyes567--0-
AAVE397945:0:Tyes0-232133604
ABAC204669:0:Tyes00172038141029
ABAU360910:0:Tyes001--
ABOR393595:0:Tyes2922920--
ABUT367737:0:Tyes---01319
ACAU438753:0:Tyes0-7162523-
ACEL351607:0:Tyes884884-0-
ACRY349163:8:Tyes807022571001-
ADEH290397:0:Tyes288628860--
AEHR187272:0:Tyes5815810--
AFER243159:0:Tyes155515551556-0
AHYD196024:0:Tyes22103
ALAI441768:0:Tyes-01082921823
AMAR234826:0:Tyes-862-0-
AMAR329726:9:Tyes00-3341665
AMET293826:0:Tyes15401540-01207
AORE350688:0:Tyes00-710-
APHA212042:0:Tyes-0-28-
APLE416269:0:Tyes16711671174617450
APLE434271:0:Tno16791679176417630
ASAL382245:5:Tyes1-230
ASP1667:3:Tyes566--0-
ASP232721:2:Tyes0-2--
ASP62928:0:Tyes110373-
ASP62977:0:Tyes3623620--
ASP76114:2:Tyes0-11165-
AVAR240292:3:Tyes20172017-3310
AYEL322098:4:Tyes---068
BABO262698:1:Tno6876871650-
BAMB339670:3:Tno110-1449
BAMB398577:3:Tno110--
BAMY326423:0:Tyes42042020740-
BANT260799:0:Tno2591259139070-
BANT261594:2:Tno2562256238850-
BANT568206:2:Tyes0046872741-
BANT592021:2:Tno2731273140820-
BAPH198804:0:Tyes1--0-
BAPH372461:0:Tyes1--0-
BBAC264462:0:Tyes--0--
BBAC360095:0:Tyes00-284-
BBRO257310:0:Tyes103110311032-0
BCAN483179:1:Tno6926921400-
BCEN331271:2:Tno001--
BCEN331272:3:Tyes110--
BCER226900:1:Tyes001275--
BCER288681:0:Tno2526252634300-
BCER315749:1:Tyes15191519267202943
BCER405917:1:Tyes2450245037610-
BCER572264:1:Tno2709270939910-
BCIC186490:0:Tyes1--0-
BCLA66692:0:Tyes2276227602509-
BFRA272559:1:Tyes-0---
BFRA295405:0:Tno-0---
BHAL272558:0:Tyes0011003801516
BHEN283166:0:Tyes00-330-
BHER314723:0:Fyes----0
BJAP224911:0:Fyes18014915-0-
BLIC279010:0:Tyes543543-0-
BMAL243160:0:Tno00---
BMAL243160:1:Tno--0--
BMAL320388:0:Tno00---
BMAL320388:1:Tno--0--
BMAL320389:0:Tyes00---
BMAL320389:1:Tyes--0--
BMEL224914:1:Tno00524700-
BMEL359391:1:Tno6646641530-
BOVI236:1:Tyes6356351450-
BPAR257311:0:Tno001--
BPER257313:0:Tyes110--
BPET94624:0:Tyes110--
BPSE272560:1:Tyes5315310--
BPSE320372:1:Tno191219121322-0
BPSE320373:1:Tno001--
BPUM315750:0:Tyes41067620670-
BQUI283165:0:Tyes00-280-
BSP107806:2:Tyes11-0-
BSP36773:2:Tyes110--
BSP376:0:Tyes26642664012-
BSUB:0:Tyes47947924880-
BSUI204722:1:Tyes6826821380-
BSUI470137:1:Tno7197191630-
BTHA271848:1:Tno124812480-287
BTHU281309:1:Tno2503250337300-
BTHU412694:1:Tno2324232434640-
BTRI382640:1:Tyes00-314-
BTUR314724:0:Fyes----0
BVIE269482:7:Tyes110--
BWEI315730:4:Tyes2520252037970-
BXEN266265:0:Tyes----0
BXEN266265:1:Tyes33330--
CACE272562:1:Tyes11011101602744
CAULO:0:Tyes3838-0-
CBEI290402:0:Tyes00---
CBLO203907:0:Tyes11-0-
CBLO291272:0:Tno1--0-
CBOT36826:1:Tno0--824-
CBOT441770:0:Tyes0--972-
CBOT441771:0:Tno0--862-
CBOT441772:1:Tno00-882-
CBOT498213:1:Tno00-911-
CBOT508765:1:Tyes0--1931-
CBOT515621:2:Tyes00-835-
CBOT536232:0:Tno0--907-
CBUR227377:1:Tyes1462-0--
CBUR360115:1:Tno1531-0--
CBUR434922:2:Tno0-1560--
CCHL340177:0:Tyes0----
CCON360104:2:Tyes626626032-
CCUR360105:0:Tyes9779770154-
CDES477974:0:Tyes104710470--
CDIF272563:1:Tyes00-32-
CDIP257309:0:Tyes-681-0-
CEFF196164:0:Fyes1042--0-
CFET360106:0:Tyes4514510920-
CGLU196627:0:Tyes-930-0-
CHOM360107:1:Tyes702702-0-
CHUT269798:0:Tyes-596-0-
CHYD246194:0:Tyes---0260
CJAP155077:0:Tyes583583490-
CJEI306537:0:Tyes0--705-
CJEJ192222:0:Tyes6565-0-
CJEJ195099:0:Tno276276-2130
CJEJ354242:2:Tyes59--0-
CJEJ360109:0:Tyes00-67-
CJEJ407148:0:Tno6666-0-
CKLU431943:1:Tyes755--01685
CMET456442:0:Tyes----0
CMIC31964:2:Tyes0--803-
CMIC443906:2:Tyes830--0-
CNOV386415:0:Tyes872872-0-
CPEL335992:0:Tyes0084358-
CPER195102:1:Tyes11051105-0-
CPER195103:0:Tno1357--0-
CPER289380:2:Tyes----0
CPER289380:3:Tyes10941094-0-
CPHY357809:0:Tyes00---
CPRO264201:0:Fyes-613-0-
CPSY167879:0:Tyes2092090210205
CRUT413404:0:Tyes896-0--
CSAL290398:0:Tyes981981977-0
CSP501479:8:Fyes612-13420-
CSP78:2:Tyes4805480535590-
CTEP194439:0:Tyes--0--
CTET212717:0:Tyes773--18950
CVES412965:0:Tyes8138130--
CVIO243365:0:Tyes717169-0
DARO159087:0:Tyes1028102810270-
DDES207559:0:Tyes00---
DETH243164:0:Tyes---0-
DGEO319795:1:Tyes-0-282-
DHAF138119:0:Tyes24832483-8240
DNOD246195:0:Tyes3-0-599
DOLE96561:0:Tyes14161416-19520
DPSY177439:2:Tyes001374872-
DRAD243230:3:Tyes-837-0-
DRED349161:0:Tyes00730--
DSHI398580:5:Tyes247-076-
DSP216389:0:Tyes---0-
DSP255470:0:Tno---0171
DVUL882:1:Tyes238723870--
ECAN269484:0:Tyes-0-66-
ECAR218491:0:Tyes22103
ECHA205920:0:Tyes00-80-
ECOL199310:0:Tno2924103
ECOL316407:0:Tno1187230
ECOL331111:6:Tno33104
ECOL362663:0:Tno2843103
ECOL364106:1:Tno2790103
ECOL405955:2:Tyes2739103
ECOL409438:6:Tyes2767103
ECOL413997:0:Tno2737103
ECOL439855:4:Tno2854103
ECOL469008:0:Tno13578230
ECOL481805:0:Tno13629230
ECOL585034:0:Tno22103
ECOL585035:0:Tno2776103
ECOL585055:0:Tno22103
ECOL585056:2:Tno22103
ECOL585057:0:Tno2647103
ECOL585397:0:Tno2762103
ECOL83334:0:Tno22103
ECOLI:0:Tno2716103
ECOO157:0:Tno22103
EFAE226185:3:Tyes414414-0-
EFER585054:1:Tyes2905103
ELIT314225:0:Tyes7567560342-
ERUM254945:0:Tyes---0-
ERUM302409:0:Tno---0-
ESP42895:1:Tyes22103
FALN326424:0:Tyes-0-1029-
FJOH376686:0:Tyes---0-
FMAG334413:1:Tyes-0---
FNUC190304:0:Tyes886886-6110
FPHI484022:1:Tyes125612560917-
FRANT:0:Tno270-0934-
FSP106370:0:Tyes-0-776-
FSP1855:0:Tyes-9448840-
FSUC59374:0:Tyes10791079-0-
FTUL351581:0:Tno986-11050-
FTUL393011:0:Tno901-10020-
FTUL393115:0:Tyes269-0916-
FTUL401614:0:Tyes634-0909-
FTUL418136:0:Tno0-808197-
FTUL458234:0:Tno931-10370-
GBET391165:0:Tyes90190101175-
GFOR411154:0:Tyes---0-
GKAU235909:0:Tyes----0
GKAU235909:1:Tyes37037023090-
GMET269799:1:Tyes002234-3075
GOXY290633:5:Tyes0----
GSUL243231:0:Tyes00---
GTHE420246:1:Tyes338338230501334
GURA351605:0:Tyes00---
GVIO251221:0:Tyes851851-3040
HACI382638:1:Tyes---0-
HARS204773:0:Tyes110--
HAUR316274:2:Tyes2089-16304355
HCHE349521:0:Tyes3442344234430-
HDUC233412:0:Tyes1531153101228
HHAL349124:0:Tyes47747715150-
HHEP235279:0:Tyes1138--3310
HINF281310:0:Tyes3633633624180
HINF374930:0:Tyes0011571-
HINF71421:0:Tno3473473464160
HMOD498761:0:Tyes5275270-102
HMUK485914:1:Tyes----0
HNEP81032:0:Tyes280128011820-
HPY:0:Tno---0-
HPYL357544:1:Tyes---0217
HPYL85963:0:Tno---0-
HSOM205914:1:Tyes0012945
HSOM228400:0:Tno0530121044
ILOI283942:0:Tyes98598509841136
JSP290400:1:Tyes0-1191105-
JSP375286:0:Tyes110-3260
KPNE272620:2:Tyes22103
KRAD266940:2:Fyes---0-
LBOR355276:1:Tyes----0
LBOR355277:1:Tno----0
LBRE387344:2:Tyes-879--0
LCAS321967:1:Tyes00---
LCHO395495:0:Tyes1-0--
LHEL405566:0:Tyes----0
LINN272626:1:Tno18811881-22540
LINT189518:1:Tyes---0-
LINT267671:1:Tno---0-
LINT363253:3:Tyes----0
LLAC272622:5:Tyes00---
LLAC272623:0:Tyes00---
LMES203120:1:Tyes00---
LMON169963:0:Tno00-385503
LMON265669:0:Tyes00-382-
LPLA220668:0:Tyes-0---
LPNE272624:0:Tno0---1409
LPNE297245:1:Fno11---0
LPNE297246:1:Fyes13---0
LPNE400673:0:Tno0---11
LREU557436:0:Tyes-0---
LSAK314315:0:Tyes593593--0
LSPH444177:1:Tyes10631063078957
LWEL386043:0:Tyes00-378-
LXYL281090:0:Tyes---0-
MABS561007:1:Tyes0--877-
MAER449447:0:Tyes43174317-5450
MAQU351348:2:Tyes001--
MART243272:0:Tyes---0-
MAVI243243:0:Tyes0--926-
MBOV233413:0:Tno0--1946-
MBOV410289:0:Tno0--1949-
MCAP243233:0:Tyes5151520-
MCAP340047:0:Tyes---2810
MEXT419610:0:Tyes694-20150-
MFLA265072:0:Tyes8948940-1102
MFLO265311:0:Tyes---0-
MGEN243273:0:Tyes---0-
MGIL350054:3:Tyes0--1145-
MHUN323259:0:Tyes----0
MHYO262719:0:Tyes---034
MHYO262722:0:Tno---033
MHYO295358:0:Tno---034
MJAN243232:2:Tyes----0
MLAB410358:0:Tyes--0--
MLEP272631:0:Tyes0--86-
MLOT266835:2:Tyes3282328203732-
MMAG342108:0:Tyes00-3029-
MMAR267377:0:Tyes----0
MMAR368407:0:Tyes----0
MMAR394221:0:Tyes1944194402043-
MMAR402880:1:Tyes----0
MMAR426368:0:Tyes----0
MMAR444158:0:Tyes----0
MMOB267748:0:Tyes---1740
MMYC272632:0:Tyes---0-
MPEN272633:0:Tyes---3560
MPET420662:1:Tyes12305510--
MPNE272634:0:Tyes---0-
MPUL272635:0:Tyes---0-
MSME246196:0:Tyes1399--0-
MSP164756:1:Tno1178-15380-
MSP164757:0:Tno1178-15240-
MSP189918:2:Tyes1197-15510-
MSP266779:3:Tyes0014684053-
MSP400668:0:Tyes0012207-
MSP409:2:Tyes4300-02322-
MSTA339860:0:Tyes----0
MSUC221988:0:Tyes3723723733740
MSYN262723:0:Tyes---0-
MTBCDC:0:Tno0--2086-
MTBRV:0:Tno0--1946-
MTHE264732:0:Tyes00--807
MTUB336982:0:Tno0--1914-
MTUB419947:0:Tyes0--2022-
MVAN350058:0:Tyes1115--0-
MXAN246197:0:Tyes00549--
NARO279238:0:Tyes001105489-
NEUR228410:0:Tyes0-403--
NEUT335283:2:Tyes00394--
NFAR247156:2:Tyes---0-
NGON242231:0:Tyes6946949449380
NHAM323097:2:Tyes2529252914050-
NMEN122586:0:Tno60260208151225
NMEN122587:0:Tyes00259253-
NMEN272831:0:Tno7357359539470
NMEN374833:0:Tno788788105010430
NMUL323848:3:Tyes110--
NOCE323261:1:Tyes211021102111-0
NSEN222891:0:Tyes-117-0-
NSP103690:6:Tyes727727-12170
NSP35761:1:Tyes--0927-
NSP387092:0:Tyes130-012001087
NWIN323098:0:Tyes2024-10130-
OANT439375:5:Tyes2266226619760-
OCAR504832:0:Tyes939-20050-
OIHE221109:0:Tyes30330312830-
OTSU357244:0:Fyes---2740
PAER208963:0:Tyes001--
PAER208964:0:Tno001--
PARC259536:0:Tyes0-420--
PAST100379:0:Tyes---1490
PATL342610:0:Tyes11182805
PCAR338963:0:Tyes002021353-
PCRY335284:1:Tyes0-452--
PDIS435591:0:Tyes-0-1751-
PENT384676:0:Tyes0013833-
PFLU205922:0:Tyes4354354340-
PFLU216595:1:Tyes4559455945580-
PFLU220664:0:Tyes110--
PGIN242619:0:Tyes-0-430-
PHAL326442:1:Tyes1303-013011305
PHOR70601:0:Tyes----0
PING357804:0:Tyes11119720
PINT246198:1:Tyes-0--157
PLUM243265:0:Fyes22103
PLUT319225:0:Tyes00---
PMAR146891:0:Tyes---0-
PMAR167539:0:Tyes---0-
PMAR167540:0:Tyes---0-
PMAR167542:0:Tyes---0-
PMAR167546:0:Tyes---0-
PMAR167555:0:Tyes---0-
PMAR59920:0:Tno---0-
PMAR74546:0:Tyes---0-
PMAR74547:0:Tyes149149-0-
PMAR93060:0:Tyes---0-
PMEN399739:0:Tyes110--
PMUL272843:1:Tyes3973973983990
PNAP365044:8:Tyes1686-0--
PPEN278197:0:Tyes---0-
PPRO298386:2:Tyes1-230
PPUT160488:0:Tno001892-
PPUT351746:0:Tyes0013996-
PPUT76869:0:Tno0014144794
PRUM264731:0:Tyes-0--748
PSP117:0:Tyes---0-
PSP296591:2:Tyes1140-1136-0
PSP312153:0:Tyes0-342702-
PSP56811:2:Tyes5345340--
PSTU379731:0:Tyes0012871-
PSYR205918:0:Tyes110--
PSYR223283:2:Tyes001-2790
PTHE370438:0:Tyes5475478270705
RAKA293614:0:Fyes---0-
RALB246199:0:Tyes---02298
RBEL336407:0:Tyes---3810
RBEL391896:0:Fno---0116
RCAN293613:0:Fyes---0-
RCAS383372:0:Tyes--306812540
RCON272944:0:Tno---0-
RDEN375451:4:Tyes0-222975-
RETL347834:5:Tyes1874-19850-
REUT264198:3:Tyes001--
REUT381666:2:Tyes245324530--
RFEL315456:2:Tyes---7170
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