CANDIDATE ID: 713

CANDIDATE ID: 713

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9928250e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7942 (yjiY) (b4354)
   Products of gene:
     - G7942-MONOMER (predicted inner membrane protein)

- G7243 (ypdA) (b2380)
   Products of gene:
     - G7243-MONOMER (predicted sensory kinase in two-component system with YpdB)

- EG12007 (yehU) (b2126)
   Products of gene:
     - EG12007-MONOMER (predicted sensory kinase in two-component system with YehT)

- EG12006 (yehT) (b2125)
   Products of gene:
     - EG12006-MONOMER (two-component response regulator)

- EG10167 (cstA) (b0598)
   Products of gene:
     - EG10167-MONOMER (peptide transporter induced by carbon starvation)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 172
Effective number of orgs (counting one per cluster within 468 clusters): 111

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TLET416591 ncbi Thermotoga lettingae TMO4
TFUS269800 ncbi Thermobifida fusca YX5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153055
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAGA211110 ncbi Streptococcus agalactiae NEM3165
SAGA208435 ncbi Streptococcus agalactiae 2603V/R5
SAGA205921 ncbi Streptococcus agalactiae A9095
RSP101510 ncbi Rhodococcus jostii RHA15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332095
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PPRO298386 ncbi Photobacterium profundum SS95
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PDIS435591 ncbi Parabacteroides distasonis ATCC 85034
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
NFAR247156 ncbi Nocardia farcinica IFM 101525
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-15
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSP400668 ncbi Marinomonas sp. MWYL15
MSP189918 ncbi Mycobacterium sp. KMS5
MSP164757 ncbi Mycobacterium sp. JLS5
MSP164756 ncbi Mycobacterium sp. MCS5
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MPET420662 ncbi Methylibium petroleiphilum PM15
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK5
MFLA265072 ncbi Methylobacillus flagellatus KT5
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255865
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DRED349161 ncbi Desulfotomaculum reducens MI-15
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CTET212717 ncbi Clostridium tetani E885
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CDIF272563 ncbi Clostridium difficile 6305
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54824
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1685
BSP36773 Burkholderia sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE272560 ncbi Burkholderia pseudomallei K962434
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BHAL272558 ncbi Bacillus halodurans C-1255
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
ASP62977 ncbi Acinetobacter sp. ADP14
ASP1667 Arthrobacter sp.5
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC15


Names of the homologs of the genes in the group in each of these orgs
  G7942   G7243   EG12007   EG12006   EG10167   
YPSE349747 YPSIP31758_1905YPSIP31758_4007YPSIP31758_4007YPSIP31758_3221YPSIP31758_1905
YPSE273123 YPTB2156YPTB3788YPTB3788YPTB0840YPTB2156
YPES386656 YPDSF_0900YPDSF_3308YPDSF_3308YPDSF_3073YPDSF_0900
YPES377628 YPN_1703YPN_3591YPN_3591YPN_0812YPN_1703
YPES360102 YPA_1594YPA_3772YPA_3772YPA_2858YPA_1594
YPES349746 YPANGOLA_A2243YPANGOLA_A4117YPANGOLA_A4117YPANGOLA_A3485YPANGOLA_A2243
YPES214092 YPO2234YPO3943YPO3943YPO3287YPO2234
YPES187410 Y2076Y3885Y3885Y0902Y2076
YENT393305 YE1981YE1228YE4014YE0849YE1981
XORY360094 XOOORF_3859XOOORF_4761XOOORF_0885XOOORF_3859
XORY342109 XOO1333XOO3780XOO3779XOO1333
XORY291331 XOO1447XOO0652XOO4008XOO1447
XCAM487884 XCC-B100_1446XCC-B100_1666XCC-B100_3863XCC-B100_0684XCC-B100_1446
XCAM316273 XCAORF_3079XCAORF_0634XCAORF_3848XCAORF_3079
XCAM314565 XC_1398XC_3748XC_0648XC_1398
XCAM190485 XCC2718XCC3677XCC3512XCC2718
XAXO190486 XAC2881XAC2670XAC3720XAC0621XAC2881
VVUL216895 VV1_0501VV1_0502VV1_0502VV1_0503VV1_0501
VVUL196600 VV0693VV0692VV0692VV0691VV0693
VPAR223926 VP0540VP0539VP0539VP0538VP0540
VFIS312309 VF1147VF1149VF1149VF1148VF1147
VCHO345073 VC0395_A0218VC0395_A0225VC0395_A0225VC0395_A0224VC0395_A0218
VCHO VC0687VC0694VC0694VC0693VC0687
TTEN273068 TTE0869TTE0871TTE0871TTE0870TTE0869
TSP1755 TETH514_0909TETH514_1959TETH514_1959TETH514_0399TETH514_0909
TLET416591 TLET_0573TLET_0571TLET_0572TLET_0573
TFUS269800 TFU_1389TFU_2857TFU_2857TFU_2858TFU_1389
STYP99287 STM0600STM2159STM2159STM2158STM0600
STHE292459 STH683STH986STH986STH987STH683
SSP94122 SHEWANA3_2595SHEWANA3_2593SHEWANA3_2593SHEWANA3_2594SHEWANA3_0888
SSON300269 SSO_0549SSO_2172SSO_2172SSO_2171SSO_0549
SSED425104 SSED_2884SSED_2882SSED_2882SSED_2883SSED_2884
SSAP342451 SSP2440SSP0464SSP0464SSP0463SSP2440
SPRO399741 SPRO_2639SPRO_3404SPRO_4588SPRO_4587SPRO_2639
SPEA398579 SPEA_1478SPEA_1480SPEA_1480SPEA_1479SPEA_1478
SLOI323850 SHEW_2330SHEW_2328SHEW_2328SHEW_2329SHEW_2330
SHIGELLA CSTAYEHUYEHUYEHTCSTA
SHAL458817 SHAL_1562SHAL_1564SHAL_1564SHAL_1563SHAL_1562
SFLE373384 SFV_0546SFV_2438SFV_2182SFV_2181SFV_0546
SFLE198214 AAN45788.1AAN43724.1AAN43724.1AAN43723.1AAN45788.1
SERY405948 SACE_1515SACE_0115SACE_0115SACE_4727SACE_1515
SENT454169 SEHA_C4938SEHA_C2394SEHA_C2394SEHA_C2393SEHA_C4938
SENT321314 SCH_4384SCH_2175SCH_2175SCH_2174SCH_4384
SENT295319 SPA4353SPA0692SPA0692SPA0693SPA4353
SENT220341 STY0644STY2389STY2389STY2388STY0644
SENT209261 T2268T0696T0696T0697T2268
SDYS300267 SDY_4607SDY_2579SDY_2163SDY_2164SDY_4607
SDEN318161 SDEN_0907SDEN_0848SDEN_0848SDEN_0847SDEN_0907
SBOY300268 SBO_4402SBO_2406SBO_0949SBO_0948SBO_4402
SBAL402882 SHEW185_1657SHEW185_0054SHEW185_1659SHEW185_1658SHEW185_3490
SBAL399599 SBAL195_1694SBAL195_0059SBAL195_1696SBAL195_1695SBAL195_3613
SAGA211110 GBS1050GBS0180GBS1052GBS1051GBS1050
SAGA208435 SAG_1015SAG_0182SAG_1017SAG_1016SAG_1015
SAGA205921 SAK_1110SAK_0248SAK_1112SAK_1111SAK_1110
RSP101510 RHA1_RO05876RHA1_RO05040RHA1_RO05040RHA1_RO05041RHA1_RO05876
RSOL267608 RSC0022RSC1351RSC1351RSC1352RSC0022
RSAL288705 RSAL33209_0374RSAL33209_0539RSAL33209_0539RSAL33209_0538RSAL33209_0374
RRUB269796 RRU_A0259RRU_A0377RRU_A0377RRU_A0376RRU_A0259
RPAL316056 RPC_2942RPC_1084RPC_1084RPC_1083RPC_2942
RMET266264 RMET_3574RMET_1380RMET_1380RMET_1381RMET_3574
RFER338969 RFER_2451RFER_2453RFER_2453RFER_2452RFER_2451
REUT381666 H16_A3708H16_A2234H16_A2234H16_A3389H16_A3708
REUT264198 REUT_A3417REUT_A1966REUT_A1966REUT_A1965REUT_A3417
PSYR223283 PSPTO_4638PSPTO_0126PSPTO_0126PSPTO_0127PSPTO_4638
PSYR205918 PSYR_4273PSYR_0064PSYR_0064PSYR_0063PSYR_4273
PSTU379731 PST_0377PST_0522PST_0522PST_0523PST_0377
PPRO298386 PBPRA3037PBPRB1912PBPRA3027PBPRA3035PBPRA3037
PLUM243265 PLU4522PLU4520PLU4520PLU4521PLU4522
PHAL326442 PSHAB0210PSHAA1404PSHAA1404PSHAA1405PSHAB0210
PDIS435591 BDI_2481BDI_1952BDI_1951BDI_2481
PCRY335284 PCRYO_1295PCRYO_0764PCRYO_0764PCRYO_0765PCRYO_1295
PATL342610 PATL_1109PATL_2386PATL_2386PATL_2385PATL_1109
PAER208964 PA4606PA5262PA5261PA4606
PAER208963 PA14_60950PA14_69480PA14_69470PA14_60950
OIHE221109 OB1373OB1642OB1642OB1641OB1373
NFAR247156 NFA47880NFA17980NFA17980NFA17970NFA47880
MVAN350058 MVAN_2024MVAN_4559MVAN_4559MVAN_4560MVAN_2024
MTHE264732 MOTH_1963MOTH_1965MOTH_1965MOTH_2172MOTH_1963
MSP400668 MMWYL1_3340MMWYL1_3342MMWYL1_3342MMWYL1_3341MMWYL1_3340
MSP189918 MKMS_1845MKMS_4125MKMS_4125MKMS_4126MKMS_1845
MSP164757 MJLS_1779MJLS_4279MJLS_4279MJLS_4280MJLS_1779
MSP164756 MMCS_1798MMCS_4050MMCS_4050MMCS_4051MMCS_1798
MSME246196 MSMEG_2259MSMEG_5158MSMEG_5158MSMEG_5159MSMEG_2259
MPET420662 MPE_A1025MPE_A1112MPE_A1112MPE_A1113MPE_A1025
MGIL350054 MFLV_4322MFLV_2144MFLV_2144MFLV_2143MFLV_4322
MFLA265072 MFLA_0334MFLA_0037MFLA_0037MFLA_0036MFLA_0334
LSPH444177 BSPH_0584BSPH_0582BSPH_0582BSPH_0583BSPH_0584
KPNE272620 GKPORF_B4175GKPORF_B2052GKPORF_B1846GKPORF_B1845GKPORF_B4175
ILOI283942 IL0697IL1260IL1260IL0296IL0697
HMOD498761 HM1_1674HM1_1676HM1_1676HM1_1675HM1_1674
GURA351605 GURA_2790GURA_2792GURA_2792GURA_2791GURA_2790
GTHE420246 GTNG_0525GTNG_3128GTNG_1803GTNG_1559GTNG_0525
GMET269799 GMET_2948GMET_2698GMET_2698GMET_2697GMET_2948
GKAU235909 GK0612GK3209GK1912GK1480GK0612
FNUC190304 FN0221FN0220FN0220FN0219FN0221
ESP42895 ENT638_1130ENT638_2919ENT638_2724ENT638_2723ENT638_1130
EFER585054 EFER_3073EFER_0788EFER_2212EFER_2211EFER_3073
ECOO157 CSTAZ3645YEHUYEHTCSTA
ECOL83334 ECS0637ECS3260ECS2937ECS2936ECS0637
ECOL585397 ECED1_5219ECED1_2827ECED1_2482ECED1_2481ECED1_5219
ECOL585057 ECIAI39_0575ECIAI39_2524ECIAI39_0887ECIAI39_0888ECIAI39_0575
ECOL585056 ECUMN_0692ECUMN_2710ECUMN_2460ECUMN_2459ECUMN_0692
ECOL585055 EC55989_5016EC55989_2676EC55989_2375EC55989_2374EC55989_5016
ECOL585035 ECS88_4975ECS88_2575ECS88_2269ECS88_2268ECS88_4975
ECOL585034 ECIAI1_4564ECIAI1_2446ECIAI1_2202ECIAI1_2201ECIAI1_4564
ECOL481805 ECOLC_3712ECOLC_1289ECOLC_1521ECOLC_1522ECOLC_3712
ECOL469008 ECBD_3676ECBD_1292ECBD_1533ECBD_1534ECBD_3676
ECOL439855 ECSMS35_0618ECSMS35_2532ECSMS35_0918ECSMS35_0919ECSMS35_0618
ECOL413997 ECB_04220ECB_02290ECB_02055ECB_02054ECB_04220
ECOL409438 ECSE_4619ECSE_2677ECSE_2394ECSE_2393ECSE_4619
ECOL405955 APECO1_1451APECO1_4157APECO1_4423APECO1_4424APECO1_1451
ECOL364106 UTI89_C5057UTI89_C2712UTI89_C2398UTI89_C2397UTI89_C5057
ECOL362663 ECP_4682ECP_2406ECP_2164ECP_2163ECP_4682
ECOL331111 ECE24377A_0618ECE24377A_2670ECE24377A_2414ECE24377A_2413ECE24377A_0618
ECOL316407 ECK4344:JW5791:B4354ECK2376:JW5388:B2380ECK2118:JW5353:B2126ECK2117:JW5352:B2125ECK4344:JW5791:B4354
ECOL199310 C5429C2919C2656C2655C5429
ECAR218491 ECA1961ECA2432ECA4152ECA3353ECA1961
DVUL882 DVU_0599DVU_0597DVU_0597DVU_0596DVU_0599
DRED349161 DRED_2956DRED_2958DRED_2958DRED_2957DRED_2956
DDES207559 DDE_0227DDE_0160DDE_0160DDE_0161DDE_0227
DARO159087 DARO_2095DARO_2094DARO_2094DARO_2093DARO_2095
CVIO243365 CV_0762CV_1771CV_1665CV_1664CV_0762
CTET212717 CTC_01977CTC_01978CTC_01978CTC_01979CTC_01977
CPER289380 CPR_0725CPR_1002CPR_1002CPR_0725
CPER195103 CPF_0741CPF_1171CPF_1171CPF_0741
CPER195102 CPE0743CPE0927CPE0927CPE0743
CNOV386415 NT01CX_1259NT01CX_1257NT01CX_1257NT01CX_1258NT01CX_1259
CHYD246194 CHY_2217CHY_2219CHY_2219CHY_0658CHY_2217
CDIF272563 CD2600CD2602CD2602CD2601CD2600
CBOT536232 CLM_0652CLM_3743CLM_3743CLM_3742CLM_0652
CBOT515621 CLJ_B0631CLJ_B3590CLJ_B3590CLJ_B3589CLJ_B0631
CBOT498213 CLD_0200CLD_1214CLD_1214CLD_1215CLD_0200
CBOT441772 CLI_0629CLI_3479CLI_3479CLI_3478CLI_0629
CBOT441771 CLC_0607CLC_3251CLC_3251CLC_3250CLC_0607
CBOT441770 CLB_0590CLB_3365CLB_3365CLB_3364CLB_0590
CBOT36826 CBO0550CBO3309CBO3309CBO3308CBO0550
CBEI290402 CBEI_0554CBEI_0555CBEI_0555CBEI_0556CBEI_0554
BWEI315730 BCERKBAB4_5210BCERKBAB4_5235BCERKBAB4_5235BCERKBAB4_5234BCERKBAB4_5210
BTHU412694 BALH_4919BALH_4948BALH_4948BALH_4946BALH_4919
BTHU281309 BT9727_5096BT9727_5123BT9727_5123BT9727_5122BT9727_5096
BTHE226186 BT_1742BT_3967BT_4566BT_1742
BTHA271848 BTH_II2252BTH_II1401BTH_II1401BTH_II1400BTH_II2252
BSUB BSU28710BSU28930BSU28930BSU28920BSU28710
BSP36773 BCEP18194_B0097BCEP18194_C6685BCEP18194_C6685BCEP18194_C6684BCEP18194_B0097
BPUM315750 BPUM_2525BPUM_2536BPUM_2536BPUM_2535BPUM_2525
BPSE320373 BURPS668_A3065BURPS668_A1457BURPS668_A1458BURPS668_A3065
BPSE272560 BPSS2173BPSS0990BPSS0991BPSS2173
BLIC279010 BL00344BL00380BL00380BL00379BL00344
BHAL272558 BH1793BH1909BH3447BH1200BH1793
BFRA295405 BF3323BF3366BF0089BF3323
BFRA272559 BF3162BF3197BF0101BF3162
BCLA66692 ABC1450ABC4058ABC4058ABC4057ABC1450
BCER572264 BCA_5568BCA_5593BCA_5593BCA_5592BCA_5568
BCER405917 BCE_5545BCE_5574BCE_5574BCE_5573BCE_5545
BCER315749 BCER98_3929BCER98_3959BCER98_3959BCER98_3958BCER98_3929
BCER288681 BCE33L5113BCE33L5138BCE33L5138BCE33L5137BCE33L5113
BCER226900 BC_5416BC_5441BC_5441BC_5440BC_5416
BANT592021 BAA_5695BAA_5722BAA_5722BAA_5721BAA_5695
BANT568206 BAMEG_5712BAMEG_5739BAMEG_5739BAMEG_5738BAMEG_5712
BANT261594 GBAA5666GBAA5692GBAA5692GBAA5691GBAA5666
BANT260799 BAS5269BAS5296BAS5296BAS5295BAS5269
BAMY326423 RBAM_025770RBAM_025970RBAM_025970RBAM_025960RBAM_025770
ASP62977 ACIAD2205ACIAD0284ACIAD0285ACIAD2205
ASP1667 ARTH_0681ARTH_1376ARTH_1376ARTH_1375ARTH_0681
ASAL382245 ASA_1691ASA_0068ASA_1693ASA_1692ASA_1691
AMET293826 AMET_4301AMET_1377AMET_1377AMET_1378AMET_4301
AHYD196024 AHA_3292AHA_0066AHA_2618AHA_3291AHA_3292
AEHR187272 MLG_0314MLG_2672MLG_2671MLG_0314
ABOR393595 ABO_1303ABO_2324ABO_2324ABO_2323ABO_1303
ABAC204669 ACID345_3619ACID345_3292ACID345_3292ACID345_3291ACID345_3619
AAVE397945 AAVE_4228AAVE_1948AAVE_2035AAVE_4228
AAUR290340 AAUR_0848AAUR_1513AAUR_1513AAUR_1512AAUR_0848


Organism features enriched in list (features available for 163 out of the 172 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000328246112
Disease:Anthrax 0.005949144
Disease:Botulism 0.001633755
Disease:Bubonic_plague 0.000446666
Disease:Dysentery 0.000446666
Disease:Gastroenteritis 0.00026761013
Endospores:No 0.000082640211
Endospores:Yes 3.470e-123853
GC_Content_Range4:0-40 7.292e-735213
GC_Content_Range4:40-60 1.830e-892224
GC_Content_Range7:30-40 3.246e-821166
GC_Content_Range7:40-50 0.005891543117
GC_Content_Range7:50-60 5.847e-649107
Genome_Size_Range5:2-4 0.000027135197
Genome_Size_Range5:4-6 4.770e-30110184
Genome_Size_Range9:2-3 3.852e-713120
Genome_Size_Range9:4-5 4.104e-105396
Genome_Size_Range9:5-6 2.775e-155788
Gram_Stain:Gram_Pos 0.003515154150
Habitat:Host-associated 0.000102239206
Habitat:Multiple 0.000239767178
Habitat:Terrestrial 0.00022301831
Motility:No 0.000034424151
Motility:Yes 2.505e-12112267
Oxygen_Req:Facultative 1.489e-783201
Pathogenic_in:Human 0.007021171213
Pathogenic_in:No 2.068e-737226
Pathogenic_in:Plant 0.0067488915
Shape:Coccus 3.232e-6782
Shape:Rod 9.638e-21144347
Shape:Spiral 0.0001392134
Temp._range:Mesophilic 0.0003488146473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 270
Effective number of orgs (counting one per cluster within 468 clusters): 228

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMED366394 ncbi Sinorhizobium medicae WSM4190
SLAC55218 Ruegeria lacuscaerulensis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NHAM323097 ncbi Nitrobacter hamburgensis X140
NEUT335283 ncbi Nitrosomonas eutropha C910
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP266779 ncbi Chelativorans sp. BNC10
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP290400 ncbi Jannaschia sp. CCS10
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSP1855 Frankia sp. EAN1pec0
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii1
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102471
BMAL320388 ncbi Burkholderia mallei SAVP11
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABAU360910 ncbi Bordetella avium 197N0


Names of the homologs of the genes in the group in each of these orgs
  G7942   G7243   EG12007   EG12006   EG10167   
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TSP28240
TROS309801
TPET390874
TPEN368408
TPAL243276
TMAR243274
TERY203124
TELO197221
TDEN326298 TMDEN_0935
TCRU317025
TACI273075
SWOL335541 SWOL_0444
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SPYO160490 SPY1588
SMED366394
SLAC55218
SGLO343509
SELO269084
SACI56780
SACI330779
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316055
RPAL258594
RMAS416276
RLEG216596
RFEL315456
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSP312153
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198 PIN_A0004
PING357804
PHOR70601
PGIN242619
PFUR186497
PCAR338963
PAST100379
OTSU357244
OCAR504832
OANT439375
NWIN323098
NSP387092
NSP103690
NSEN222891
NOCE323261
NHAM323097
NEUT335283
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSP266779
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAER449447
MAEO419665
LXYL281090
LWEL386043 LWE2031
LSAK314315
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LJOH257314
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBIF456481 LEPBI_I3012
LBIF355278 LBF_2908
LACI272621
JSP290400
HSP64091
HSAL478009
HNEP81032
HMUK485914
GVIO251221
GOXY290633
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSP1855
FRANT
FPHI484022
FMAG334413 FMG_0879
FALN326424
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DRAD243230
DOLE96561
DGEO319795
DETH243164
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CSP501479
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CHUT269798 CHU_2575
CHOM360107
CFEL264202
CEFF196164
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BXEN266265
BTUR314724
BTRI382640
BSUI470137
BSUI204722
BSP376
BSP107806
BQUI283165
BPET94624 BPET0622
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389 BMA10247_A1103
BMAL320388 BMASAVP1_0196
BMAL243160 BMA_A1228
BJAP224911
BHER314723
BHEN283166
BGAR290434
BCIC186490
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
APHA212042
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ADEH290397
ACRY349163
ACEL351607 ACEL_1065
ACAU438753 AZC_1300
ABAU360910


Organism features enriched in list (features available for 249 out of the 270 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00548882992
Arrangment:Pairs 1.144e-724112
Disease:Pharyngitis 0.001037288
Disease:bronchitis_and_pneumonitis 0.001037288
Endospores:Yes 2.349e-11253
GC_Content_Range4:0-40 0.0005223109213
GC_Content_Range4:40-60 0.009143584224
GC_Content_Range7:0-30 0.00047373147
GC_Content_Range7:50-60 0.000106529107
Genome_Size_Range5:0-2 3.161e-22117155
Genome_Size_Range5:4-6 1.864e-1733184
Genome_Size_Range5:6-10 0.00222861147
Genome_Size_Range9:0-1 4.515e-112727
Genome_Size_Range9:1-2 6.860e-1390128
Genome_Size_Range9:4-5 6.260e-72096
Genome_Size_Range9:5-6 1.226e-91388
Genome_Size_Range9:6-8 0.0023924838
Gram_Stain:Gram_Pos 7.414e-935150
Habitat:Multiple 0.001012860178
Habitat:Specialized 0.00623363153
Habitat:Terrestrial 0.0094518731
Motility:Yes 1.780e-784267
Optimal_temp.:- 0.0080447122257
Oxygen_Req:Facultative 4.224e-661201
Pathogenic_in:Human 0.000290872213
Pathogenic_in:No 0.0001442117226
Shape:Irregular_coccus 0.00364641317
Shape:Rod 0.0000139124347
Shape:Sphere 1.745e-61819
Temp._range:Mesophilic 0.0009963188473
Temp._range:Thermophilic 0.00094332435



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLUTAMINDEG-PWY (glutamine degradation I)1911170.5005
PWY-6196 (serine racemization)102760.4642
PWY0-1314 (fructose degradation)2241210.4426
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121800.4229
THREONINE-DEG2-PWY (threonine degradation II)2141150.4228
RIBOKIN-PWY (ribose degradation)2791340.4114



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7243   EG12007   EG12006   EG10167   
G79420.9987860.9989590.9990180.999979
G72430.9998850.9998280.998723
EG120070.9998820.998848
EG120060.998917
EG10167



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PAIRWISE BLAST SCORES:

  G7942   G7243   EG12007   EG12006   EG10167   
G79420.0f0---0
G7243-0.0f03.5e-55--
EG12007-1.4e-510.0f0--
EG12006---0.0f0-
EG101670---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12006 EG12007 (centered at EG12007)
EG10167 (centered at EG10167)
G7243 (centered at G7243)
G7942 (centered at G7942)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7942   G7243   EG12007   EG12006   EG10167   
271/623233/623249/623250/623272/623
AAEO224324:0:Tyes0---0
AAUR290340:2:Tyes06516516500
AAVE397945:0:Tyes22360-862236
ABAC204669:0:Tyes331110331
ABOR393595:0:Tyes01036103610350
ABUT367737:0:Tyes0--990
ACAU438753:0:Tyes--0--
ACEL351607:0:Tyes---0-
AEHR187272:0:Tyes0-234323420
AHYD196024:0:Tyes31400248431393140
AMET293826:0:Tyes28270012827
ANAE240017:0:Tyes0---0
AORE350688:0:Tyes-110-
APER272557:0:Tyes0---0
APLE416269:0:Tyes0---0
APLE434271:0:Tno0---0
ASAL382245:5:Tyes15670156915681567
ASP1667:3:Tyes07047047030
ASP232721:2:Tyes-208720870-
ASP62928:0:Tyes-001-
ASP62977:0:Tyes18050-11805
ASP76114:2:Tyes-233223320-
BAMB339670:2:Tno0---0
BAMB398577:2:Tno0---0
BAMY326423:0:Tyes02020190
BANT260799:0:Tno02626250
BANT261594:2:Tno02424230
BANT568206:2:Tyes02727260
BANT592021:2:Tno02727260
BCEN331271:1:Tno0---0
BCEN331272:2:Tyes0---0
BCER226900:1:Tyes02525240
BCER288681:0:Tno02424230
BCER315749:1:Tyes03030290
BCER405917:1:Tyes02929280
BCER572264:1:Tno02525240
BCLA66692:0:Tyes02620262026190
BFRA272559:1:Tyes2980-301502980
BFRA295405:0:Tno3275-331803275
BHAL272558:0:Tyes59771322660597
BLIC279010:0:Tyes02020190
BLON206672:0:Tyes0---0
BMAL243160:0:Tno--0--
BMAL320388:0:Tno--0--
BMAL320389:0:Tyes--0--
BPET94624:0:Tyes---0-
BPSE272560:0:Tyes1171-0-1171
BPSE320372:0:Tno0--15260
BPSE320373:0:Tno1595-011595
BPUM315750:0:Tyes0101090
BSP36773:0:Tyes-110-
BSP36773:1:Tyes0---0
BSUB:0:Tyes02222210
BTHA271848:0:Tno844110844
BTHE226186:0:Tyes0-226828730
BTHU281309:1:Tno02626250
BTHU412694:1:Tno02424230
BVIE269482:6:Tyes0---0
BWEI315730:4:Tyes02424230
CACE272562:1:Tyes0--10
CBEI290402:0:Tyes01120
CBOT36826:1:Tno02723272327220
CBOT441770:0:Tyes02699269926980
CBOT441771:0:Tno02563256325620
CBOT441772:1:Tno02748274827470
CBOT498213:1:Tno02738273827370
CBOT508765:1:Tyes-00--
CBOT515621:2:Tyes02884288428830
CBOT536232:0:Tno02966296629650
CDES477974:0:Tyes-3363360-
CDIF272563:1:Tyes02210
CDIP257309:0:Tyes0---0
CFET360106:0:Tyes0---0
CGLU196627:0:Tyes0---0
CHUT269798:0:Tyes---0-
CHYD246194:0:Tyes15211523152301521
CJAP155077:0:Tyes-1-0-
CJEJ192222:0:Tyes0---0
CJEJ195099:0:Tno0---0
CJEJ354242:2:Tyes0---0
CJEJ360109:0:Tyes0---0
CJEJ407148:0:Tno0---0
CKLU431943:1:Tyes-001726-
CNOV386415:0:Tyes20012
CPER195102:1:Tyes0184184-0
CPER195103:0:Tno0426426-0
CPER289380:3:Tyes0274274-0
CPHY357809:0:Tyes-11301080-
CPSY167879:0:Tyes-001-
CSAL290398:0:Tyes0---0
CTET212717:0:Tyes01120
CVIO243365:0:Tyes010479419400
DARO159087:0:Tyes21102
DDES207559:0:Tyes6800168
DHAF138119:0:Tyes-7847840-
DNOD246195:0:Tyes0---0
DPSY177439:2:Tyes0---0
DRED349161:0:Tyes02210
DVUL882:1:Tyes31103
ECAR218491:0:Tyes0471223014100
ECOL199310:0:Tno2732258102732
ECOL316407:0:Tno2202263102202
ECOL331111:6:Tno01974172617250
ECOL362663:0:Tno2502239102502
ECOL364106:1:Tno2641315102641
ECOL405955:2:Tyes01814153915380
ECOL409438:6:Tyes2291286102291
ECOL413997:0:Tno2200236102200
ECOL439855:4:Tno018682842850
ECOL469008:0:Tno235802382392358
ECOL481805:0:Tno242002302312420
ECOL585034:0:Tno2300238102300
ECOL585035:0:Tno2600298102600
ECOL585055:0:Tno2580291102580
ECOL585056:2:Tno02028178117800
ECOL585057:0:Tno019503293300
ECOL585397:0:Tno2657337102657
ECOL83334:0:Tno02678235223510
ECOLI:0:Tno38261827156515640
ECOO157:0:Tno02686237223710
EFAE226185:3:Tyes-110-
EFER585054:1:Tyes22790140714062279
ELIT314225:0:Tyes-001-
ESP42895:1:Tyes01802160616050
FJOH376686:0:Tyes--23020-
FMAG334413:1:Tyes----0
FNOD381764:0:Tyes-1-0-
FNUC190304:0:Tyes21102
FSP106370:0:Tyes0---0
FSUC59374:0:Tyes0--2750
GFOR411154:0:Tyes--10-
GKAU235909:1:Tyes0263613148700
GMET269799:1:Tyes254110254
GSUL243231:0:Tyes0---0
GTHE420246:1:Tyes02566125610200
GURA351605:0:Tyes02210
HACI382638:1:Tyes0---0
HARS204773:0:Tyes-0-1-
HAUR316274:2:Tyes-00--
HBUT415426:0:Tyes0---0
HCHE349521:0:Tyes-1-0-
HDUC233412:0:Tyes0---0
HHAL349124:0:Tyes0---0
HHEP235279:0:Tyes0---0
HINF281310:0:Tyes0---0
HINF374930:0:Tyes0---0
HINF71421:0:Tno0---0
HMAR272569:8:Tyes0---0
HMOD498761:0:Tyes02210
HPY:0:Tno0---0
HPYL357544:1:Tyes0---0
HPYL85963:0:Tno0---0
HSOM205914:1:Tyes0---0
HSOM228400:0:Tno0---0
HWAL362976:1:Tyes0---0
IHOS453591:0:Tyes0---0
ILOI283942:0:Tyes4099939930409
JSP375286:0:Tyes-0-1-
KPNE272620:2:Tyes2264205102264
KRAD266940:2:Fyes0---0
LBIF355278:2:Tyes---0-
LBIF456481:2:Tno---0-
LBOR355276:1:Tyes0---0
LBOR355277:1:Tno0---0
LCHO395495:0:Tyes--10-
LINT189518:1:Tyes0---0
LINT267671:1:Tno0---0
LINT363253:3:Tyes0---0
LLAC272622:3:Tyes0---0
LLAC272623:0:Tyes0---0
LREU557436:0:Tyes-001-
LSPH444177:1:Tyes20012
LWEL386043:0:Tyes-0---
MABS561007:1:Tyes0---0
MACE188937:0:Tyes0---0
MAQU351348:2:Tyes-110-
MAVI243243:0:Tyes0---0
MBOV233413:0:Tno0---0
MBOV410289:0:Tno0---0
MCAP243233:0:Tyes0---0
MEXT419610:0:Tyes0---0
MFLA265072:0:Tyes298110298
MGIL350054:3:Tyes21971102197
MPET420662:1:Tyes08686870
MSME246196:0:Tyes02871287128720
MSP164756:1:Tno02272227222730
MSP164757:0:Tno02510251025110
MSP189918:2:Tyes02299229923000
MSP400668:0:Tyes02210
MSP409:2:Tyes0---0
MSUC221988:0:Tyes0---0
MTBCDC:0:Tno0---0
MTBRV:0:Tno0---0
MTHE264732:0:Tyes0222000
MTUB336982:0:Tno0---0
MTUB419947:0:Tyes0---0
MVAN350058:0:Tyes02521252125220
MXAN246197:0:Tyes--01-
NARO279238:0:Tyes-38037-
NEUR228410:0:Tyes0---0
NFAR247156:2:Tyes30191103019
NGON242231:0:Tyes0---0
NMEN122586:0:Tno0---0
NMEN122587:0:Tyes0---0
NMEN272831:0:Tno0---0
NMEN374833:0:Tno0---0
NMUL323848:3:Tyes0---0
NPHA348780:2:Tyes0---0
NSP35761:1:Tyes-110-
OIHE221109:0:Tyes02682682670
PABY272844:0:Tyes0---0
PACN267747:0:Tyes0---0
PAER178306:0:Tyes0---0
PAER208963:0:Tyes0-6846830
PAER208964:0:Tno0-6676660
PARC259536:0:Tyes0---0
PARS340102:0:Tyes0---0
PATL342610:0:Tyes01284128412830
PCRY335284:1:Tyes529001529
PDIS435591:0:Tyes528-10528
PENT384676:0:Tyes0---0
PFLU205922:0:Tyes0--6120
PFLU216595:1:Tyes0---0
PFLU220664:0:Tyes0--6360
PHAL326442:0:Tyes0---0
PHAL326442:1:Tyes-001-
PINT246198:1:Tyes---0-
PLUM243265:0:Fyes20012
PLUT319225:0:Tyes0---0
PMEN399739:0:Tyes--01-
PMUL272843:1:Tyes0---0
PNAP365044:8:Tyes-110-
PPEN278197:0:Tyes-001-
PPRO298386:1:Tyes-0---
PPRO298386:2:Tyes10-0810
PPUT160488:0:Tno0---0
PPUT351746:0:Tyes0---0
PPUT76869:0:Tno4479--04479
PRUM264731:0:Tyes0--13160
PSP117:0:Tyes0---0
PSP296591:2:Tyes-110-
PSP56811:2:Tyes0---0
PSTU379731:0:Tyes01451451460
PSYR205918:0:Tyes42221104222
PSYR223283:2:Tyes44610014461
PTHE370438:0:Tyes-001-
RALB246199:0:Tyes-1719-0-
REUT264198:3:Tyes14841101484
REUT381666:2:Tyes14330011271433
RFER338969:1:Tyes02210
RMET266264:2:Tyes21830012183
RPAL316056:0:Tyes18621101862
RPAL316057:0:Tyes0---0
RRUB269796:1:Tyes01181181170
RSAL288705:0:Tyes01621621610
RSOL267608:1:Tyes01352135213530
RSP101510:3:Fyes836001836
RXYL266117:0:Tyes0---0
SAGA205921:0:Tno8160818817816
SAGA208435:0:Tno8130815814813
SAGA211110:0:Tyes8840886885884
SALA317655:1:Tyes-176301762-
SARE391037:0:Tyes-001-
SAUR158878:1:Tno-001-
SAUR158879:1:Tno-001-
SAUR196620:0:Tno-001-
SAUR273036:0:Tno-001-
SAUR282458:0:Tno-001-
SAUR282459:0:Tno-001-
SAUR359786:1:Tno-001-
SAUR359787:1:Tno-001-
SAUR367830:3:Tno-001-
SAUR418127:0:Tyes-001-
SAUR426430:0:Tno-001-
SAUR93061:0:Fno-001-
SAUR93062:1:Tno-001-
SAVE227882:1:Fyes-330-
SBAL399599:3:Tyes16640166616653650
SBAL402882:1:Tno16110161316123506
SBOY300268:1:Tyes32701375103270
SCO:2:Fyes-005499-
SDEG203122:0:Tyes-322101-
SDEN318161:0:Tyes6011060
SDYS300267:1:Tyes2261399012261
SENT209261:0:Tno14910011491
SENT220341:0:Tno01563156315620
SENT295319:0:Tno35070013507
SENT321314:2:Tno22541102254
SENT454169:2:Tno24401102440
SEPI176279:1:Tyes-001-
SEPI176280:0:Tno-001-
SERY405948:0:Tyes13950045641395
SFLE198214:0:Tyes21371102137
SFLE373384:0:Tno01788154015390
SFUM335543:0:Tyes0---0
SGOR29390:0:Tyes-00--
SHAE279808:0:Tyes-110-
SHAL458817:0:Tyes02210
SHIGELLA:0:Tno01555155515540
SLOI323850:0:Tyes20012
SMAR399550:0:Tyes0---0
SMEL266834:1:Tyes-1-0-
SMUT210007:0:Tyes-110-
SONE211586:1:Tyes-001-
SPEA398579:0:Tno02210
SPNE1313:0:Tyes-00--
SPNE170187:0:Tyes-00--
SPNE171101:0:Tno-00--
SPNE487213:0:Tno-00--
SPNE487214:0:Tno-00--
SPNE488221:0:Tno-00--
SPRO399741:1:Tyes0773197519740
SPYO160490:0:Tno-0---
SPYO186103:0:Tno-00--
SPYO193567:0:Tno-00--
SPYO198466:0:Tno-00--
SPYO286636:0:Tno-00--
SPYO293653:0:Tno-00--
SPYO319701:0:Tyes-00--
SPYO370551:0:Tno-00--
SPYO370552:0:Tno-00--
SPYO370553:0:Tno-00--
SPYO370554:0:Tyes-00--
SRUB309807:1:Tyes-015442061-
SSAP342451:2:Tyes20361102036
SSED425104:0:Tyes20012
SSON300269:1:Tyes01540154015390
SSP94122:1:Tyes17741772177217730
STHE292459:0:Tyes03243243250
STRO369723:0:Tyes-001-
STYP99287:1:Tyes01544154415430
SWOL335541:0:Tyes---0-
TDEN243275:0:Tyes0---0
TDEN292415:0:Tyes-0-1-
TDEN326298:0:Tyes---0-
TFUS269800:0:Tyes01492149214930
TKOD69014:0:Tyes0---0
TLET416591:0:Tyes2-012
TPSE340099:0:Tyes0--12740
TSP1755:0:Tyes499152615260499
TTEN273068:0:Tyes02210
TTUR377629:0:Tyes-00581-
VCHO:0:Tyes07760
VCHO345073:1:Tno07760
VEIS391735:1:Tyes-00926-
VFIS312309:2:Tyes02210
VPAR223926:1:Tyes21102
VVUL196600:2:Tyes21102
VVUL216895:1:Tno01120
WSUC273121:0:Tyes0---0
XAXO190486:0:Tyes22602049309902260
XCAM190485:0:Tyes0-9597940
XCAM314565:0:Tno740-31050740
XCAM316273:0:Tno2399-031662399
XCAM487884:0:Tno76398432180763
XFAS160492:2:Tno--01-
XFAS183190:1:Tyes--10-
XFAS405440:0:Tno--10-
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YENT393305:1:Tyes1088381307801088
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ZMOB264203:0:Tyes-110-



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