CANDIDATE ID: 721

CANDIDATE ID: 721

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9928550e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7023 (torY) (b1873)
   Products of gene:
     - G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
     - CPLX-63 (trimethylamine N-oxide reductase III)
       Reactions:
        a menaquinol + trimethylamine N-oxide[periplasmic space]  ->  a menaquinone + trimethylamine[periplasmic space] + H2O[periplasmic space]
         In pathways
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)
         PWY0-1347 (NADH to trimethylamine N-oxide electron transfer)

- G7022 (torZ) (bisZ)
   Products of gene:
     - G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
     - CPLX-63 (trimethylamine N-oxide reductase III)
       Reactions:
        a menaquinol + trimethylamine N-oxide[periplasmic space]  ->  a menaquinone + trimethylamine[periplasmic space] + H2O[periplasmic space]
         In pathways
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)
         PWY0-1347 (NADH to trimethylamine N-oxide electron transfer)

- G6846 (ynfF) (b1588)
   Products of gene:
     - G6846-MONOMER (oxidoreductase subunit)
     - CPLX0-1601 (putative selenate reductase)
       Reactions:
        selenate + a reduced electron acceptor  ->  selenite + an oxidized electron acceptor + H2O

- EG11814 (torA) (b0997)
   Products of gene:
     - TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
     - TMAOREDUCTI-CPLX (trimethylamine N-oxide reductase I)
       Reactions:
        a menaquinol + trimethylamine N-oxide[periplasmic space]  ->  a menaquinone + trimethylamine[periplasmic space] + H2O[periplasmic space]
         In pathways
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)
         PWY0-1347 (NADH to trimethylamine N-oxide electron transfer)

- EG10124 (bisC) (bisC)
   Products of gene:
     - EG10124-MONOMER (biotin sulfoxide reductase)
       Reactions:
        L-methionine-(S)-S-oxide + a reduced thioredoxin  ->  L-methionine + an oxidized thioredoxin + H2O
        d-biotin d-sulfoxide + a reduced thioredoxin  =  biotin + an oxidized thioredoxin + H2O



Back to top


ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 125
Effective number of orgs (counting one per cluster within 468 clusters): 76

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
WSUC273121 ncbi Wolinella succinogenes DSM 17405
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP357808 ncbi Roseiflexus sp. RS-14
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH345
REUT264198 ncbi Ralstonia eutropha JMP1344
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PSP56811 Psychrobacter sp.5
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PACN267747 ncbi Propionibacterium acnes KPA1712024
NSP35761 Nocardioides sp.4
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra4
MTUB336982 ncbi Mycobacterium tuberculosis F114
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MTBRV ncbi Mycobacterium tuberculosis H37Rv4
MTBCDC ncbi Mycobacterium tuberculosis CDC15514
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P24
MBOV233413 ncbi Mycobacterium bovis AF2122/974
MABS561007 ncbi Mycobacterium abscessus ATCC 199774
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHEP235279 ncbi Helicobacter hepaticus ATCC 514495
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DHAF138119 ncbi Desulfitobacterium hafniense Y514
CSP501479 Citreicella sp. SE455
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJEJ407148 ncbi Campylobacter jejuni jejuni 811165
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1765
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111685
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3814
CFET360106 ncbi Campylobacter fetus fetus 82-404
CCUR360105 ncbi Campylobacter curvus 525.925
CCON360104 ncbi Campylobacter concisus 138265
BSP36773 Burkholderia sp.4
BPET94624 Bordetella petrii5
BPAR257311 ncbi Bordetella parapertussis 128225
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BBRO257310 ncbi Bordetella bronchiseptica RB505
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis5
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABUT367737 ncbi Arcobacter butzleri RM40185


Names of the homologs of the genes in the group in each of these orgs
  G7023   G7022   G6846   EG11814   EG10124   
YPSE349747 YPSIP31758_1275YPSIP31758_0974YPSIP31758_1344YPSIP31758_0974YPSIP31758_0974
YPSE273123 YPTB2758YPTB3043YPTB2688YPTB3043YPTB3043
YPES386656 YPDSF_2141YPDSF_1711YPDSF_3035YPDSF_1711YPDSF_1711
YPES377628 YPN_1349YPN_2998YPN_1417YPN_2998YPN_2998
YPES360102 YPA_2227YPA_0475YPA_2819YPA_0475YPA_0475
YPES349746 YPANGOLA_A2788YPANGOLA_A3247YPANGOLA_A0922YPANGOLA_A3247YPANGOLA_A3247
YPES214092 YPO3036YPO0794YPO3325YPO0794YPO0794
YPES187410 Y1447Y3182Y1519Y3182Y3182
YENT393305 YE1445YE3330YE1444YE1444YE3330
WSUC273121 WS1850WS1849WS1430WS1849WS1849
VVUL216895 VV1_2896VV1_2895VV1_2895VV1_2895VV1_2895
VVUL196600 VV1374VV1375VV1375VV1375VV1375
VPAR223926 VPA0127VPA0128VP1447VPA0128VPA0128
VFIS312309 VFA0189VFA0188VFA0082VFA0299VFA0990
VCHO345073 VC0395_A1539VC0395_A1538VC0395_A1538VC0395_A1538VC0395_A1538
VCHO VC1951VC1950VC1950VC1950VC1950
STYP99287 STM3823STM3822STM1499STM3822STM3822
STHE292459 STH2332STH2332STH713STH2332
SSP94122 SHEWANA3_1056SHEWANA3_1055SHEWANA3_1055SHEWANA3_1055SHEWANA3_1055
SSON300269 SSO_1245SSO_1248SSO_0895SSO_1248SSO_1248
SSED425104 SSED_3359SSED_3360SSED_2923SSED_3360SSED_3360
SPRO399741 SPRO_3232SPRO_3233SPRO_1687SPRO_3233SPRO_3233
SPEA398579 SPEA_3342SPEA_3343SPEA_2818SPEA_3343SPEA_3343
SONE211586 SO_1233SO_1232SO_1429SO_1232SO_1232
SLOI323850 SHEW_2797SHEW_2798SHEW_2798SHEW_2798SHEW_2798
SHIGELLA YECKBISZDMSABISZBISZ
SHAL458817 SHAL_3414SHAL_3415SHAL_2926SHAL_3415SHAL_3415
SFLE373384 SFV_1911SFV_1007SFV_1601SFV_1007SFV_1007
SFLE198214 AAN43468.1AAN45036.1AAN43193.1AAN45036.1AAN45036.1
SENT454169 SEHA_C4155SEHA_C4154SEHA_C4651SEHA_C4154SEHA_C4154
SENT321314 SCH_3741SCH_3740SCH_4183SCH_3740SCH_3740
SENT295319 SPA3673SPA3672SPA1834SPA3672SPA3672
SENT220341 STY2481STY4158STY1566STY4158STY4158
SENT209261 T3695T3875T1970T3875T3875
SDYS300267 SDY_0876SDY_1171SDY_2367SDY_4352SDY_1171
SBOY300268 SBO_2235SBO_3553SBO_1548SBO_3553SBO_3553
SBAL402882 SHEW185_3212SHEW185_3213SHEW185_3213SHEW185_3213SHEW185_3213
SBAL399599 SBAL195_3351SBAL195_3352SBAL195_2228SBAL195_3352SBAL195_3352
RSPH349102 RSPH17025_3218RSPH17025_4273RSPH17025_4273RSPH17025_4273RSPH17025_4273
RSPH349101 RSPH17029_3773RSPH17029_3775RSPH17029_3648RSPH17029_3775RSPH17029_3775
RSPH272943 RSP_3046RSP_3048RSP_3048RSP_3048RSP_3048
RSP357808 ROSERS_4542ROSERS_4542ROSERS_4542ROSERS_4542
RRUB269796 RRU_A1283RRU_A1287RRU_A1287RRU_A1287RRU_A1287
RPOM246200 SPO_2389SPO_2389SPO_2389SPO_2389
RPAL316058 RPB_1492RPB_3416RPB_1492RPB_3139
RPAL316056 RPC_0656RPC_1877RPC_0661RPC_1877RPC_1877
RPAL258594 RPA4653RPA4653RPA4653RPA4653
RMET266264 RMET_4061RMET_1145RMET_1145RMET_1145RMET_1145
REUT264198 REUT_B4765REUT_B5717REUT_B5717REUT_B5717
RDEN375451 RD1_3664RD1_3664RD1_3664RD1_3664
PSP56811 PSYCPRWF_0213PSYCPRWF_0214PSYCPRWF_0214PSYCPRWF_0214PSYCPRWF_0214
PPRO298386 PBPRA1496PBPRA2363PBPRB0330PBPRA2363PBPRB0079
PMUL272843 PM1792PM1793PM1754PM1793PM1793
PACN267747 PPA0517PPA0517PPA0517PPA0517
NSP35761 NOCA_4801NOCA_4801NOCA_4801NOCA_4801
MTUB419947 MRA_1450MRA_1450MRA_1450MRA_1450
MTUB336982 TBFG_11470TBFG_11470TBFG_11470TBFG_11470
MTHE264732 MOTH_1389MOTH_1386MOTH_1386MOTH_1389
MTBRV RV1442RV1442RV1442RV1442
MTBCDC MT1487MT1487MT1487MT1487
MSUC221988 MS0587MS0588MS0588MS0588MS0588
MSP266779 MESO_2539MESO_3611MESO_2539MESO_2539
MSP189918 MKMS_2212MKMS_3667MKMS_2212MKMS_2212
MSP164757 MJLS_2155MJLS_3599MJLS_2155MJLS_2155
MSP164756 MMCS_2166MMCS_3594MMCS_2166MMCS_2166
MSME246196 MSMEG_2738MSMEG_6816MSMEG_2738MSMEG_2738
MGIL350054 MFLV_3958MFLV_5161MFLV_3958MFLV_3958
MBOV410289 BCG_1503BCG_1503BCG_1503BCG_1503
MBOV233413 MB1477MB1477MB1477MB1477
MABS561007 MAB_3041MAB_3041MAB_3041MAB_3041
KPNE272620 GKPORF_B3259GKPORF_B0577GKPORF_B3259GKPORF_B3259
HSOM228400 HSM_1276HSM_1835HSM_1275HSM_1835HSM_1835
HSOM205914 HS_0807HS_1673HS_0806HS_1673HS_1673
HINF71421 HI_0644HI_0643HI_1047HI_0643HI_0643
HINF374930 CGSHIEE_08990CGSHIEE_06835CGSHIEE_06835CGSHIEE_06835CGSHIEE_06835
HINF281310 NTHI0467NTHI1207NTHI1207NTHI1207NTHI1207
HHEP235279 HH_0951HH_0950HH_0950HH_0950HH_0950
HDUC233412 HD_1393HD_1394HD_1394HD_1394HD_1394
ESP42895 ENT638_0173ENT638_1418ENT638_0173ENT638_0173
EFER585054 EFER_1191EFER_3548EFER_4181EFER_3548EFER_3548
ECOO157 YECKBISCZ3785BISCBISC
ECOL83334 ECS2583ECS1152ECS2294ECS1152ECS1152
ECOL585397 ECED1_2142ECED1_2141ECED1_1757ECED1_2141ECED1_2141
ECOL585057 ECIAI39_1176ECIAI39_4059ECIAI39_2254ECIAI39_4059ECIAI39_4059
ECOL585056 ECUMN_2171ECUMN_2170ECUMN_1873ECUMN_2170ECUMN_2170
ECOL585055 EC55989_2052EC55989_4007EC55989_1753EC55989_4007EC55989_4007
ECOL585035 ECS88_1931ECS88_3970ECS88_1633ECS88_3970ECS88_3970
ECOL585034 ECIAI1_1960ECIAI1_3716ECIAI1_1638ECIAI1_3716ECIAI1_3716
ECOL481805 ECOLC_1759ECOLC_2598ECOLC_2702ECOLC_2598ECOLC_2598
ECOL469008 ECBD_1765ECBD_2597ECBD_2059ECBD_2597ECBD_2597
ECOL439855 ECSMS35_1313ECSMS35_1314ECSMS35_1613ECSMS35_1314ECSMS35_1314
ECOL413997 ECB_01844ECB_03401ECB_01557ECB_03401ECB_03401
ECOL409438 ECSE_2108ECSE_3824ECSE_1709ECSE_3824ECSE_3824
ECOL405955 APECO1_923APECO1_922APECO1_671APECO1_922APECO1_922
ECOL364106 UTI89_C2077UTI89_C4091UTI89_C1775UTI89_C4091UTI89_C4091
ECOL362663 ECP_1818ECP_3654ECP_0908ECP_3654ECP_3654
ECOL331111 ECE24377A_2105ECE24377A_1114ECE24377A_0969ECE24377A_1114ECE24377A_1114
ECOL316407 ECK1874:JW1862:B1873ECK3538:JW5940:B3551ECK1583:JW5260:B1588ECK3538:JW5940:B3551ECK3538:JW5940:B3551
ECOL199310 C2287C4369C1978C4369C4369
ECAR218491 ECA1892ECA1009ECA1009ECA1009
DSHI398580 DSHI_3161DSHI_2278DSHI_2278DSHI_2278DSHI_2278
DHAF138119 DSY4087DSY1448DSY3535DSY1448
CSP501479 CSE45_4406CSE45_4404CSE45_4404CSE45_4404CSE45_4404
CPSY167879 CPS_1832CPS_1833CPS_1833CPS_1833CPS_1833
CJEJ407148 C8J_0242C8J_0241C8J_1482C8J_0241C8J_0241
CJEJ354242 CJJ81176_0292CJJ81176_0291CJJ81176_1570CJJ81176_0291CJJ81176_0291
CJEJ192222 CJ0265CCJ0264CCJ0264CCJ0264CCJ0264C
CHOM360107 CHAB381_1514CHAB381_1514CHAB381_1514CHAB381_1514
CFET360106 CFF8240_0138CFF8240_0429CFF8240_0429CFF8240_0429
CCUR360105 CCV52592_0390CCV52592_2044CCV52592_2107CCV52592_2044CCV52592_2044
CCON360104 CCC13826_1831CCC13826_1396CCC13826_1119CCC13826_1395CCC13826_1396
BSP36773 BCEP18194_A3632BCEP18194_A3632BCEP18194_A3632BCEP18194_A3632
BPET94624 BPET4083BPET4165BPET4165BPET4165BPET4165
BPAR257311 BPP2700BPP2148BPP2148BPP2148BPP4223
BJAP224911 BLR7040BLL6273BLL6273BLL6273BLL6273
BBRO257310 BB2802BB1545BB1545BB1545BB4811
BAMB398577 BAMMC406_5286BAMMC406_0475BAMMC406_5286BAMMC406_5286
BAMB339670 BAMB_3891BAMB_0450BAMB_3891BAMB_3891
ASAL382245 ASA_0266ASA_0265ASA_0265ASA_0265ASA_0265
APLE434271 APJL_0687APJL_0686APJL_1705APJL_0686APJL_0686
APLE416269 APL_0689APL_1798APL_1674APL_1798APL_1798
AMET293826 AMET_1330AMET_1330AMET_1330AMET_1330
AHYD196024 AHA_4048AHA_4049AHA_4049AHA_4049AHA_4049
ACAU438753 AZC_2648AZC_3780AZC_2648AZC_2648
ABUT367737 ABU_1142ABU_1143ABU_1143ABU_1143ABU_1143


Organism features enriched in list (features available for 117 out of the 125 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.000448873286
Disease:Bubonic_plague 0.000058866
Disease:Dysentery 0.000058866
Disease:Gastroenteritis 2.831e-81213
Disease:Tuberculosis 0.007917233
Disease:chronic_bronchitis 0.007917233
Endospores:Yes 0.0004020253
GC_Content_Range4:0-40 4.243e-917213
GC_Content_Range4:40-60 7.078e-768224
GC_Content_Range7:0-30 0.0002136147
GC_Content_Range7:30-40 0.000017416166
GC_Content_Range7:50-60 0.000015238107
Genome_Size_Range5:0-2 2.993e-711155
Genome_Size_Range5:2-4 8.332e-1112197
Genome_Size_Range5:4-6 4.272e-2686184
Genome_Size_Range9:1-2 0.000055511128
Genome_Size_Range9:2-3 0.000215711120
Genome_Size_Range9:3-4 1.840e-7177
Genome_Size_Range9:4-5 5.913e-124696
Genome_Size_Range9:5-6 2.091e-94088
Gram_Stain:Gram_Neg 8.515e-1298333
Gram_Stain:Gram_Pos 0.000093315150
Habitat:Aquatic 0.00621131091
Habitat:Multiple 0.003902547178
Habitat:Terrestrial 0.0065126131
Motility:No 0.000079215151
Motility:Yes 4.321e-675267
Optimal_temp.:35-37 0.0054137713
Optimal_temp.:37 0.007589830106
Oxygen_Req:Aerobic 4.788e-716185
Oxygen_Req:Anaerobic 0.00001146102
Oxygen_Req:Facultative 1.874e-1679201
Pathogenic_in:Human 3.539e-664213
Pathogenic_in:No 0.000031327226
Shape:Coccus 6.450e-7282
Shape:Rod 1.414e-11100347
Temp._range:Mesophilic 0.0052510104473



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 465
Effective number of orgs (counting one per cluster within 468 clusters): 369

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-401
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp1
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
DARO159087 ncbi Dechloromonas aromatica RCB1
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BVIE269482 ncbi Burkholderia vietnamiensis G41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1681
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7023   G7022   G6846   EG11814   EG10124   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852 TTHA0200
TTHE262724 TT_C0155
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMA1232
SMED366394 SMED_5182
SMAR399550
SLAC55218 SL1157_1946
SHAE279808
SGOR29390
SGLO343509
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SDEN318161 SDEN_1499
SDEG203122 SDE_0086
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RTYP257363
RSOL267608 RSC2859
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316057
RPAL316055 RPE_4144
RMAS416276
RLEG216596
RFER338969 RFER_4076
RFEL315456
RETL347834 RHE_CH01484
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731 PST_3531
PSP312153
PSP296591
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPEN278197
PNAP365044
PMOB403833
PMEN399739 PMEN_2983
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PISL384616
PINT246198
PING357804 PING_2172
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PFLU205922
PENT384676
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964 PA1172
PAER208963 PA14_49270
PAER178306
PABY272844
OTSU357244
OIHE221109
OCAR504832
OANT439375 OANT_2579
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261 NOC_0895
NMUL323848 NMUL_A0802
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283 NEUT_2332
NEUR228410 NE2336
NARO279238
MXAN246197
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSP400668
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108 AMB2686
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072 MFLA_0563
MCAP340047
MCAP243233
MBUR259564
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091 VNG0829G
HNEP81032
HMOD498761
HMAR272569 RRNAC1215
HHAL349124
HCHE349521 HCH_03367
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799 GMET_0295
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRED349161 DRED_1345
DRAD243230 DR_0397
DPSY177439 DP0343
DOLE96561 DOLE_1635
DNOD246195
DGEO319795 DGEO_0402
DETH243164
DDES207559 DDE_0299
DARO159087 DARO_3513
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CSAL290398
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ195099
CJEI306537
CJAP155077
CHYD246194 CHY_2082
CHUT269798
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CAULO
CACE272562
CABO218497
BXEN266265 BXE_C0369
BWEI315730
BVIE269482 BCEP1808_0522
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSUI470137
BSUI204722
BSUB BSU18570
BSP376 BRADO5918
BSP107806
BQUI283165
BPUM315750 BPUM_1826
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP232721
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325 AF_0176
AFER243159
ADEH290397
ACRY349163
ACEL351607
ABOR393595
ABAU360910
ABAC204669
AAUR290340
AAEO224324


Organism features enriched in list (features available for 434 out of the 465 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.0013829198286
Disease:gastroenteritis 5.457e-7113
Endospores:Yes 0.00471604753
GC_Content_Range4:0-40 3.350e-12192213
GC_Content_Range4:40-60 0.0004023150224
GC_Content_Range4:60-100 0.000116091145
GC_Content_Range7:0-30 8.651e-64647
GC_Content_Range7:30-40 4.591e-7146166
GC_Content_Range7:50-60 0.000478266107
GC_Content_Range7:60-70 0.000018981134
Genome_Size_Range5:0-2 1.251e-8140155
Genome_Size_Range5:2-4 4.820e-12179197
Genome_Size_Range5:4-6 2.441e-2387184
Genome_Size_Range5:6-10 0.00827752847
Genome_Size_Range9:0-1 0.00027932727
Genome_Size_Range9:1-2 0.0000105113128
Genome_Size_Range9:2-3 1.854e-6108120
Genome_Size_Range9:3-4 0.00002117177
Genome_Size_Range9:4-5 5.511e-124396
Genome_Size_Range9:5-6 4.600e-84488
Genome_Size_Range9:6-8 0.00402732138
Gram_Stain:Gram_Neg 7.803e-10217333
Gram_Stain:Gram_Pos 0.0001101128150
Habitat:Aquatic 0.00233627891
Motility:No 4.900e-6132151
Motility:Yes 7.613e-9169267
Optimal_temp.:30-37 0.00449481818
Optimal_temp.:35-37 0.0049464513
Oxygen_Req:Aerobic 0.0010481152185
Oxygen_Req:Anaerobic 1.344e-795102
Oxygen_Req:Facultative 4.966e-13113201
Oxygen_Req:Microaerophilic 0.0044026818
Pathogenic_in:Human 0.0001110140213
Pathogenic_in:No 0.0000820187226
Shape:Coccus 2.213e-87982
Shape:Irregular_coccus 0.00610081717
Shape:Rod 7.023e-11226347
Shape:Sphere 0.00330941919
Temp._range:Hyperthermophilic 0.00096642323
Temp._range:Mesophilic 0.0043096342473



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4863
GALACTITOLCAT-PWY (galactitol degradation)73520.4655
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218940.4224
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31290.4199
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4176



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7022   G6846   EG11814   EG10124   
G70230.9990420.9985190.9990510.998992
G70220.9993470.9997690.999774
G68460.9993280.999286
EG118140.999747
EG10124



Back to top


PAIRWISE BLAST SCORES:

  G7023   G7022   G6846   EG11814   EG10124   
G70230.0f0----
G7022-0.0f05.4e-5900
G6846-1.3e-570.0f09.1e-593.9e-65
EG11814-09.0e-590.0f00
EG10124-01.7e-6900.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX-63 (trimethylamine N-oxide reductase III) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.400, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9991 0.9985 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
   *in cand* 0.9996 0.9990 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG10124 (bisC) EG10124-MONOMER (biotin sulfoxide reductase)
   *in cand* 0.9996 0.9991 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
   *in cand* 0.9993 0.9985 G6846 (ynfF) G6846-MONOMER (oxidoreductase subunit)

- PWY0-1347 (NADH to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.176, degree of match cand to pw: 0.600, average score: 0.832)
  Genes in pathway or complex:
             0.4663 0.3131 EG12083 (nuoB) NUOB-MONOMER (NADH:ubiquinone oxidoreductase, chain B)
             0.4884 0.3050 EG12084 (nuoC) NUOC-MONOMER (NADH:ubiquinone oxidoreductase, chain CD)
             0.4452 0.2690 EG12089 (nuoI) NUOI-MONOMER (NADH:ubiquinone oxidoreductase, chain I)
             0.5861 0.3401 EG12086 (nuoE) NUOE-MONOMER (NADH:ubiquinone oxidoreductase, chain E)
             0.4463 0.1467 EG11774 (nuoF) NUOF-MONOMER (NADH:ubiquinone oxidoreductase, chain F)
             0.5082 0.2032 EG12087 (nuoG) NUOG-MONOMER (NADH:ubiquinone oxidoreductase, chain G)
             0.5231 0.2689 EG12093 (nuoN) NUON-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit N)
             0.4871 0.2234 EG11773 (nuoM) NUOM-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit M)
             0.4548 0.3176 EG12092 (nuoL) NUOL-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit L)
             0.4931 0.3447 EG12091 (nuoK) NUOK-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit K)
             0.3928 0.2126 EG12090 (nuoJ) NUOJ-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit J)
             0.4616 0.2575 EG12088 (nuoH) NUOH-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit H)
             0.4828 0.3318 EG12082 (nuoA) NUOA-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit A)
   *in cand* 0.9991 0.9985 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
   *in cand* 0.9996 0.9990 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
   *in cand* 0.9996 0.9991 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.9989 0.9981 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG10124 (bisC) EG10124-MONOMER (biotin sulfoxide reductase)
   *in cand* 0.9993 0.9985 G6846 (ynfF) G6846-MONOMER (oxidoreductase subunit)

- PWY0-1355 (formate to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.300, degree of match cand to pw: 0.600, average score: 0.730)
  Genes in pathway or complex:
             0.4119 0.2001 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
             0.6040 0.4126 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.4433 0.1702 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
             0.6179 0.5182 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
   *in cand* 0.9991 0.9985 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
   *in cand* 0.9996 0.9990 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
   *in cand* 0.9996 0.9991 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.9989 0.9981 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG10124 (bisC) EG10124-MONOMER (biotin sulfoxide reductase)
   *in cand* 0.9993 0.9985 G6846 (ynfF) G6846-MONOMER (oxidoreductase subunit)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7022 G7023 (centered at G7023)
EG10124 (centered at EG10124)
EG11814 (centered at EG11814)
G6846 (centered at G6846)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7023   G7022   G6846   EG11814   EG10124   
126/623152/623147/623147/623151/623
AAVE397945:0:Tyes-0-00
ABUT367737:0:Tyes01111
ACAU438753:0:Tyes-0114500
AEHR187272:0:Tyes1037-0--
AFUL224325:0:Tyes--0--
AHYD196024:0:Tyes01111
AMET293826:0:Tyes-0000
APLE416269:0:Tyes01151102311511151
APLE434271:0:Tno10105600
ASAL382245:5:Tyes10000
ASP62928:0:Tyes2780---
ASP76114:2:Tyes0-1362--
BAMB339670:2:Tno-0-00
BAMB339670:3:Tno--0--
BAMB398577:2:Tno-0-00
BAMB398577:3:Tno--0--
BAMY326423:0:Tyes-00-1923
BBRO257310:0:Tyes12670003302
BCEN331271:2:Tno--000
BCEN331272:3:Tyes--000
BJAP224911:0:Fyes7710000
BLIC279010:0:Tyes-00--
BPAR257311:0:Tno5270001982
BPER257313:0:Tyes-0-00
BPET94624:0:Tyes082828282
BPSE272560:1:Tyes-000-
BPSE320372:1:Tno-000-
BPSE320373:1:Tno-000-
BPUM315750:0:Tyes--0--
BSP36773:2:Tyes-0000
BSP376:0:Tyes0----
BSUB:0:Tyes--0--
BTHA271848:1:Tno-00-0
BVIE269482:7:Tyes--0--
BXEN266265:0:Tyes0----
CCON360104:2:Tyes010996910981099
CCUR360105:0:Tyes9310199300
CFET360106:0:Tyes0285-285285
CHOM360107:1:Tyes-0000
CHYD246194:0:Tyes--0--
CJEJ192222:0:Tyes10000
CJEJ354242:2:Tyes10123400
CJEJ360109:0:Tyes-0-10
CJEJ407148:0:Tno10127500
CPSY167879:0:Tyes01111
CSP501479:6:Fyes20000
DARO159087:0:Tyes0----
DDES207559:0:Tyes0----
DGEO319795:1:Tyes----0
DHAF138119:0:Tyes-2673021210
DOLE96561:0:Tyes0----
DPSY177439:2:Tyes0----
DRAD243230:3:Tyes----0
DRED349161:0:Tyes-0---
DSHI398580:5:Tyes8860000
ECAR218491:0:Tyes8920-00
ECOL199310:0:Tno3062358023582358
ECOL316407:0:Tno2912127021272127
ECOL331111:6:Tno10981390139139
ECOL362663:0:Tno9022744027442744
ECOL364106:1:Tno3022306023062306
ECOL405955:2:Tyes2562550255255
ECOL409438:6:Tyes4022158021582158
ECOL413997:0:Tno2861868018681868
ECOL439855:4:Tno0129611
ECOL469008:0:Tno0808289808808
ECOL481805:0:Tno0831934831831
ECOL585034:0:Tno3122048020482048
ECOL585035:0:Tno2872263022632263
ECOL585055:0:Tno2952216022162216
ECOL585056:2:Tno2932920292292
ECOL585057:0:Tno02880106128802880
ECOL585397:0:Tno3713700370370
ECOL83334:0:Tno14520116100
ECOLI:0:Tno90990861302608
ECOO157:0:Tno0188578818851885
EFER585054:1:Tyes02349295223492349
ESP42895:1:Tyes-0126800
GMET269799:1:Tyes0----
GTHE420246:1:Tyes--00-
HCHE349521:0:Tyes0----
HDUC233412:0:Tyes01111
HHEP235279:0:Tyes10000
HINF281310:0:Tyes0679679679679
HINF374930:0:Tyes3890000
HINF71421:0:Tno1039900
HMAR272569:8:Tyes---0-
HMUK485914:0:Tyes-0--0
HPY:0:Tno-0-00
HPYL357544:1:Tyes-0-00
HPYL85963:0:Tno-0-00
HSAL478009:4:Tyes-0--0
HSOM205914:1:Tyes18620862862
HSOM228400:0:Tno15630563563
HSP64091:2:Tno----0
KPNE272620:2:Tyes-2643026432643
KRAD266940:2:Fyes-0-00
LCHO395495:0:Tyes0---2064
MABS561007:1:Tyes-0000
MBOV233413:0:Tno-0000
MBOV410289:0:Tno-0000
MEXT419610:0:Tyes--00-
MFLA265072:0:Tyes--0--
MGIL350054:3:Tyes-0120500
MMAG342108:0:Tyes0----
MSME246196:0:Tyes-0403600
MSP164756:1:Tno-0144400
MSP164757:0:Tno-0145300
MSP189918:2:Tyes-0146900
MSP266779:3:Tyes-0107600
MSP409:2:Tyes0-5575--
MSUC221988:0:Tyes01111
MTBCDC:0:Tno-0000
MTBRV:0:Tno-0000
MTHE264732:0:Tyes-3003
MTUB336982:0:Tno-0000
MTUB419947:0:Tyes-0000
MVAN350058:0:Tyes-0-00
NEUR228410:0:Tyes0----
NEUT335283:2:Tyes0----
NMUL323848:3:Tyes0----
NOCE323261:1:Tyes0----
NSP35761:0:Tyes-0000
OANT439375:5:Tyes-0---
PACN267747:0:Tyes-0000
PAER208963:0:Tyes0----
PAER208964:0:Tno0----
PING357804:0:Tyes0----
PMEN399739:0:Tyes0----
PMUL272843:1:Tyes383903939
PPRO298386:1:Tyes--251-0
PPRO298386:2:Tyes0862-862-
PSP56811:2:Tyes01111
PSTU379731:0:Tyes0----
PSYR205918:0:Tyes-0-00
PSYR223283:2:Tyes-0-00
RCAS383372:0:Tyes-00-0
RDEN375451:4:Tyes-0000
RETL347834:5:Tyes--0--
REUT264198:2:Tyes0951-951951
REUT381666:0:Tyes0----
REUT381666:2:Tyes-00--
RFER338969:1:Tyes0----
RMET266264:1:Tyes0----
RMET266264:2:Tyes-0000
RPAL258594:0:Tyes-0000
RPAL316055:0:Tyes0----
RPAL316056:0:Tyes01216512161216
RPAL316058:0:Tyes-0193501657
RPOM246200:1:Tyes-0000
RRUB269796:1:Tyes04444
RSOL267608:1:Tyes----0
RSP101510:3:Fyes-0-00
RSP357808:0:Tyes-0000
RSPH272943:3:Tyes02222
RSPH349101:1:Tno1211230123123
RSPH349102:2:Tyes-0000
RSPH349102:4:Tyes0----
SBAL399599:3:Tyes11641165011651165
SBAL402882:1:Tno01111
SBOY300268:1:Tyes6451906019061906
SDEG203122:0:Tyes0----
SDEN318161:0:Tyes0----
SDYS300267:1:Tyes028314093244283
SENT209261:0:Tno16621826018261826
SENT220341:0:Tno8312372023722372
SENT295319:0:Tno17731772017721772
SENT321314:2:Tno1045900
SENT454169:2:Tno1045700
SFLE198214:0:Tyes2791898018981898
SFLE373384:0:Tno848055900
SHAL458817:0:Tyes5055060506506
SHIGELLA:0:Tno9539520952952
SLAC55218:1:Fyes0----
SLOI323850:0:Tyes01111
SMED366394:1:Tyes0----
SMEL266834:0:Tyes0----
SONE211586:1:Tyes1019300
SPEA398579:0:Tno5415420542542
SPRO399741:1:Tyes15561557015571557
SSED425104:0:Tyes4344350435435
SSON300269:1:Tyes3303330333333
SSP94122:1:Tyes10000
STHE292459:0:Tyes-1664166401664
STYP99287:1:Tyes23132312023122312
TFUS269800:0:Tyes-0-00
TTHE262724:1:Tyes--0--
TTHE300852:2:Tyes--0--
VCHO:0:Tyes10000
VCHO345073:1:Tno10000
VEIS391735:1:Tyes-0-00
VFIS312309:1:Tyes1071060217908
VPAR223926:0:Tyes01-11
VPAR223926:1:Tyes--0--
VVUL196600:2:Tyes01111
VVUL216895:1:Tno10000
WSUC273121:0:Tyes3723710371371
YENT393305:1:Tyes11812001812
YPES187410:5:Tno017497817491749
YPES214092:3:Tno21520242600
YPES349746:2:Tno18202271022712271
YPES360102:3:Tyes17830238300
YPES377628:2:Tno016817416811681
YPES386656:2:Tno4280132400
YPSE273123:2:Tno733670367367
YPSE349747:2:Tno297036500



Back to top