CANDIDATE ID: 747

CANDIDATE ID: 747

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9913640e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- RUVB (ruvB) (b1860)
   Products of gene:
     - EG10924-MONOMER (branch migration of Holliday structures; repair helicase)
     - RUVABC-CPLX (resolvasome)
       Reactions:
        DNA combined with exogenous DNA to form a recombinational junction  =  resolution of recombinational junction formation of two intact strands

- RUVA (ruvA) (b1861)
   Products of gene:
     - EG10923-MONOMER (branch migration of Holliday structures; repair)
     - RUVABC-CPLX (resolvasome)
       Reactions:
        DNA combined with exogenous DNA to form a recombinational junction  =  resolution of recombinational junction formation of two intact strands

- EG10835 (relA) (b2784)
   Products of gene:
     - RELA-MONOMER (GDP pyrophosphokinase / GTP pyrophosphokinase)
       Reactions:
        ATP + GDP  ->  AMP + ppGpp + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)
        GTP + ATP  ->  pppGpp + AMP + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)

- EG10097 (aspS) (b1866)
   Products of gene:
     - ASPS-MONOMER (aspartyl-tRNA synthetase)
     - ASPS-CPLX (aspartyl-tRNA synthetase)
       Reactions:
        tRNAasp + L-aspartate + ATP  ->  L-aspartyl-tRNAasp + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10051 (apt) (b0469)
   Products of gene:
     - ADENPRIBOSYLTRAN-MONOMER (Apt)
     - ADENPRIBOSYLTRAN-CPLX (adenine phosphoribosyltransferase)
       Reactions:
        5-phospho-alpha-D-ribose 1-diphosphate + adenine  ->  diphosphate + AMP
         In pathways
         P121-PWY (P121-PWY)
         PWY-5043 (PWY-5043)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P1-PWY (P1-PWY)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 336
Effective number of orgs (counting one per cluster within 468 clusters): 225

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79014
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TFUS269800 ncbi Thermobifida fusca YX5
TERY203124 ncbi Trichodesmium erythraeum IMS1014
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STRO369723 ncbi Salinispora tropica CNB-4405
STHE322159 ncbi Streptococcus thermophilus LMD-94
STHE299768 ncbi Streptococcus thermophilus CNRZ10664
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
STHE264199 ncbi Streptococcus thermophilus LMG 183114
SSUI391296 ncbi Streptococcus suis 98HAH335
SSUI391295 ncbi Streptococcus suis 05ZYH335
SSP94122 ncbi Shewanella sp. ANA-35
SSP64471 ncbi Synechococcus sp. CC93114
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153055
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPYO370554 ncbi Streptococcus pyogenes MGAS107504
SPYO370553 ncbi Streptococcus pyogenes MGAS20964
SPYO370552 ncbi Streptococcus pyogenes MGAS102704
SPYO370551 ncbi Streptococcus pyogenes MGAS94294
SPYO319701 ncbi Streptococcus pyogenes MGAS61804
SPYO293653 ncbi Streptococcus pyogenes MGAS50054
SPYO286636 ncbi Streptococcus pyogenes MGAS103944
SPYO198466 ncbi Streptococcus pyogenes MGAS3154
SPYO193567 ncbi Streptococcus pyogenes SSI-14
SPYO186103 ncbi Streptococcus pyogenes MGAS82324
SPYO160490 ncbi Streptococcus pyogenes M1 GAS4
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705855
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-65
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-145
SPNE171101 ncbi Streptococcus pneumoniae R65
SPNE170187 ncbi Streptococcus pneumoniae G545
SPNE1313 Streptococcus pneumoniae5
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMUT210007 ncbi Streptococcus mutans UA1594
SLOI323850 ncbi Shewanella loihica PV-45
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14355
SGOR29390 Streptococcus gordonii Challis5
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122285
SEPI176279 ncbi Staphylococcus epidermidis RP62A5
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SELO269084 ncbi Synechococcus elongatus PCC 63015
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAUR93062 ncbi Staphylococcus aureus aureus COL5
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83255
SAUR426430 ncbi Staphylococcus aureus aureus Newman5
SAUR418127 ncbi Staphylococcus aureus aureus Mu35
SAUR367830 Staphylococcus aureus aureus USA3005
SAUR359787 ncbi Staphylococcus aureus aureus JH15
SAUR359786 ncbi Staphylococcus aureus aureus JH95
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4765
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2525
SAUR273036 ncbi Staphylococcus aureus RF1225
SAUR196620 ncbi Staphylococcus aureus aureus MW25
SAUR158879 ncbi Staphylococcus aureus aureus N3155
SAUR158878 ncbi Staphylococcus aureus aureus Mu505
SARE391037 ncbi Salinispora arenicola CNS-2055
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSP357808 ncbi Roseiflexus sp. RS-15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PRUM264731 ncbi Prevotella ruminicola 234
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257455
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
NSP103690 ncbi Nostoc sp. PCC 71205
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL15
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAVI243243 ncbi Mycobacterium avium 1044
MAQU351348 ncbi Marinobacter aquaeolei VT85
MAER449447 ncbi Microcystis aeruginosa NIES-8435
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53345
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LSAK314315 ncbi Lactobacillus sakei sakei 23K5
LREU557436 ncbi Lactobacillus reuteri DSM 200164
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LMON265669 ncbi Listeria monocytogenes 4b F23655
LMON169963 ncbi Listeria monocytogenes EGD-e5
LLAC272623 ncbi Lactococcus lactis lactis Il14035
LLAC272622 ncbi Lactococcus lactis cremoris SK115
LJOH257314 ncbi Lactobacillus johnsonii NCC 5335
LINN272626 ncbi Listeria innocua Clip112625
LGAS324831 ncbi Lactobacillus gasseri ATCC 333235
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118424
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3654
LCHO395495 ncbi Leptothrix cholodnii SP-64
LCAS321967 ncbi Lactobacillus casei ATCC 3344
LBRE387344 ncbi Lactobacillus brevis ATCC 3675
LACI272621 ncbi Lactobacillus acidophilus NCFM5
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
GFOR411154 ncbi Gramella forsetii KT08034
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255864
FMAG334413 ncbi Finegoldia magna ATCC 293284
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
EFAE226185 ncbi Enterococcus faecalis V5835
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DRED349161 ncbi Desulfotomaculum reducens MI-15
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CTET212717 ncbi Clostridium tetani E885
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPHY357809 ncbi Clostridium phytofermentans ISDg5
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT4
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334064
CDIF272563 ncbi Clostridium difficile 6305
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54824
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1685
BSP36773 Burkholderia sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128224
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BHAL272558 ncbi Bacillus halodurans C-1254
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBRO257310 ncbi Bordetella bronchiseptica RB505
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
AVAR240292 ncbi Anabaena variabilis ATCC 294135
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AMAR329726 ncbi Acaryochloris marina MBIC110175
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACEL351607 ncbi Acidothermus cellulolyticus 11B5
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  RUVB   RUVA   EG10835   EG10097   EG10051   
YPSE349747 YPSIP31758_2030YPSIP31758_2031YPSIP31758_3319YPSIP31758_2035YPSIP31758_3060
YPSE273123 YPTB2041YPTB2040YPTB0751YPTB2036YPTB0991
YPES386656 YPDSF_1064YPDSF_1065YPDSF_2980YPDSF_1069YPDSF_2760
YPES377628 YPN_1535YPN_1534YPN_0713YPN_1530YPN_0965
YPES360102 YPA_1441YPA_1440YPA_2877YPA_1435YPA_2617
YPES349746 YPANGOLA_A2420YPANGOLA_A2421YPANGOLA_A0983YPANGOLA_A2426YPANGOLA_A2888
YPES214092 YPO2058YPO2057YPO3380YPO2053YPO3123
YPES187410 Y2252Y2253Y0811Y2258Y1059
YENT393305 YE2392YE2393YE0744YE2397YE3094
XORY360094 XOOORF_3306XOOORF_3308XOOORF_3272XOOORF_3313XOOORF_1995
XORY342109 XOO1547XOO1545XOO1637XOO1540
XORY291331 XOO1663XOO1661XOO1736XOO1656
XFAS405440 XFASM12_1063XFASM12_1061XFASM12_0674XFASM12_1108
XFAS183190 PD_0889PD_0887PD_0563PD_0946
XFAS160492 XF1902XF1904XF1316XF1856
XCAM487884 XCC-B100_1174XCC-B100_1171XCC-B100_1217XCC-B100_1166XCC-B100_1895
XCAM316273 XCAORF_3345XCAORF_3348XCAORF_3306XCAORF_3353XCAORF_2554
XCAM314565 XC_1136XC_1133XC_1173XC_1128XC_1832
XCAM190485 XCC3023XCC3025XCC2936XCC3030XCC2283
XAXO190486 XAC3147XAC3149XAC3113XAC3154XAC2391
VVUL216895 VV1_2159VV1_1575VV1_2156VV1_2002
VVUL196600 VV2284VV2285VV2821VV2288VV2412
VPAR223926 VP1052VP1051VP2564VP1047VP2180
VFIS312309 VF0952VF0951VF2080VF0949VF1688
VEIS391735 VEIS_4070VEIS_4068VEIS_4366VEIS_1326
VCHO345073 VC0395_A1436VC0395_A1437VC0395_A2029VC0395_A0735VC0395_A0571
VCHO VC1845VC1846VC2451VC1166VC1053
TTUR377629 TERTU_3434TERTU_3435TERTU_1193TERTU_0863
TTEN273068 TTE1180TTE1179TTE1195TTE1231TTE1194
TSP1755 TETH514_1454TETH514_1453TETH514_1473TETH514_1466
TPSE340099 TETH39_1014TETH39_1013TETH39_1028TETH39_1036TETH39_1027
TFUS269800 TFU_2093TFU_2094TFU_2090TFU_2086TFU_2091
TERY203124 TERY_1365TERY_2653TERY_2354TERY_0435
TELO197221 TLL2253TLL0584TLL1144TLR2338
TDEN292415 TBD_2211TBD_2213TBD_1758TBD_0442
TCRU317025 TCR_0894TCR_0893TCR_1212TCR_0890
SWOL335541 SWOL_1431SWOL_1432SWOL_0806SWOL_0812
STYP99287 STM1894STM1895STM2956STM1901STM0483
STRO369723 STROP_1810STROP_1809STROP_1815STROP_1821STROP_1814
STHE322159 STER_1909STER_0200STER_1948STER_1190
STHE299768 STR1936STR0145STR1969STR1223
STHE292459 STH1161STH1160STH2437STH2421STH2438
STHE264199 STU1936STU0145STU1969STU1223
SSUI391296 SSU98_0049SSU98_0061SSU98_2097SSU98_2143SSU98_1323
SSUI391295 SSU05_0050SSU05_0060SSU05_2094SSU05_2141SSU05_1307
SSP94122 SHEWANA3_1957SHEWANA3_1956SHEWANA3_1111SHEWANA3_1953SHEWANA3_2447
SSP64471 GSYN1744GSYN2856GSYN3023GSYN1328
SSP321332 CYB_0546CYB_1543CYB_1161CYB_2813
SSP321327 CYA_0490CYA_1944CYA_1681CYA_2018
SSON300269 SSO_1281SSO_1280SSO_2941SSO_1275SSO_0456
SSED425104 SSED_2034SSED_2033SSED_1287SSED_2030SSED_2853
SSAP342451 SSP1118SSP1117SSP1125SSP1129SSP1124
SRUB309807 SRU_1146SRU_0458SRU_1062SRU_1963
SPYO370554 MGAS10750_SPY0037MGAS10750_SPY1780MGAS10750_SPY1930MGAS10750_SPY0822
SPYO370553 MGAS2096_SPY0037MGAS2096_SPY1709MGAS2096_SPY1845MGAS2096_SPY0800
SPYO370552 MGAS10270_SPY0037MGAS10270_SPY1755MGAS10270_SPY1905MGAS10270_SPY0787
SPYO370551 MGAS9429_SPY0036MGAS9429_SPY1689MGAS9429_SPY1824MGAS9429_SPY0786
SPYO319701 M28_SPY0035M28_SPY1674M28_SPY1822M28_SPY0708
SPYO293653 M5005_SPY0035M5005_SPY1686M5005_SPY1813M5005_SPY0728
SPYO286636 M6_SPY0084M6_SPY1694M6_SPY1832M6_SPY0754
SPYO198466 SPYM3_0032SPYM3_1701SPYM3_1814SPYM3_0640
SPYO193567 SPS0033SPS1702SPS1812SPS1212
SPYO186103 SPYM18_0039SPYM18_2045SPYM18_2188SPYM18_0984
SPYO160490 SPY0038SPY1981SPY2156SPY0927
SPRO399741 SPRO_2776SPRO_2777SPRO_0792SPRO_2781SPRO_1134
SPNE488221 SP70585_0319SP70585_0242SP70585_1686SP70585_2220SP70585_1618
SPNE487214 SPH_0376SPH_0282SPH_1753SPH_2303SPH_1691
SPNE487213 SPT_0306SPT_0216SPT_1585SPT_2122SPT_1517
SPNE171101 SPR0238SPR0165SPR1487SPR1924SPR1435
SPNE170187 SPN08136SPN08036SPN13046SPN09140SPN05374
SPNE1313 SPJ_0269SPJ_0196SPJ_1539SPJ_2136SPJ_1483
SPEA398579 SPEA_2362SPEA_2363SPEA_1182SPEA_2366SPEA_1507
SONE211586 SO_2429SO_2430SO_3455SO_2433SO_2012
SMUT210007 SMU_64SMU_2044SMU_2101SMU_1467
SLOI323850 SHEW_2075SHEW_2076SHEW_1202SHEW_2079SHEW_2236
SHAL458817 SHAL_1922SHAL_1921SHAL_1219SHAL_1918SHAL_1589
SHAE279808 SH1280SH1279SH1287SH1291SH1286
SGOR29390 SGO_0108SGO_2050SGO_1822SGO_2060SGO_1001
SGLO343509 SG1262SG1261SG0510SG1257SG0688
SFUM335543 SFUM_0993SFUM_0994SFUM_2111SFUM_3302
SFLE373384 SFV_1862SFV_1863SFV_2673SFV_1868SFV_0442
SFLE198214 AAN43427.1AAN43428.1AAN44285.1AAN43432.1AAN42069.1
SERY405948 SACE_2023SACE_2022SACE_2028SACE_2041
SEPI176280 SE_1324SE_1325SE_1315SE_1311SE_1317
SEPI176279 SERP1205SERP1206SERP1196SERP1192SERP1198
SENT454169 SEHA_C2108SEHA_C2109SEHA_C3162SEHA_C2115SEHA_C0587
SENT321314 SCH_1902SCH_1903SCH_2896SCH_1909SCH_0524
SENT295319 SPA0975SPA0974SPA2821SPA0968SPA2239
SENT220341 STY2102STY2103STY3094STY2109STY0527
SENT209261 T0983T0982T2865T0976T2377
SELO269084 SYC0705_CSYC1802_CSYC0179_CSYC0240_CSYC1650_D
SDYS300267 SDY_1147SDY_1148SDY_3001SDY_1153SDY_0450
SDEN318161 SDEN_1883SDEN_1884SDEN_1193SDEN_1887SDEN_2382
SDEG203122 SDE_2533SDE_2534SDE_2238SDE_0913
SBOY300268 SBO_1177SBO_1178SBO_2665SBO_1189SBO_0369
SBAL402882 SHEW185_2303SHEW185_2304SHEW185_3144SHEW185_2307SHEW185_2616
SBAL399599 SBAL195_2419SBAL195_2420SBAL195_3289SBAL195_2423SBAL195_2691
SAUR93062 SACOL1696SACOL1697SACOL1689SACOL1685SACOL1690
SAUR93061 SAOUHSC_01750SAOUHSC_01751SAOUHSC_01742SAOUHSC_01737SAOUHSC_01743
SAUR426430 NWMN_1543NWMN_1544NWMN_1536NWMN_1532NWMN_1537
SAUR418127 SAHV_1628SAHV_1629SAHV_1621SAHV_1617SAHV_1622
SAUR367830 SAUSA300_1597SAUSA300_1598SAUSA300_1590SAUSA300_1586SAUSA300_1591
SAUR359787 SAURJH1_1731SAURJH1_1732SAURJH1_1724SAURJH1_1720SAURJH1_1725
SAUR359786 SAURJH9_1698SAURJH9_1699SAURJH9_1691SAURJH9_1687SAURJH9_1692
SAUR282459 SAS1577SAS1578SAS1570SAS1566SAS1571
SAUR282458 SAR1721SAR1722SAR1714SAR1710SAR1715
SAUR273036 SAB1510CSAB1511CSAB1503CSAB1499CSAB1504C
SAUR196620 MW1591MW1592MW1584MW1580MW1585
SAUR158879 SA1467SA1468SA1460SA1456SA1461
SAUR158878 SAV1641SAV1642SAV1634SAV1630SAV1635
SARE391037 SARE_1800SARE_1799SARE_1805SARE_1812SARE_1804
SAGA211110 GBS0049GBS1928GBS2060GBS1278
SAGA208435 SAG_0049SAG_1940SAG_2107SAG_1205
SAGA205921 SAK_0082SAK_1900SAK_2046SAK_1292
SACI56780 SYN_02971SYN_02972SYN_00904SYN_02535
RSP357808 ROSERS_2425ROSERS_3772ROSERS_4122ROSERS_1979ROSERS_0741
RSOL267608 RSC0500RSC0501RSC1576RSC0466RSC0417
RMET266264 RMET_0423RMET_0424RMET_1159RMET_0378RMET_0311
RFER338969 RFER_0820RFER_0739RFER_2071RFER_1297RFER_4239
REUT381666 H16_A0497H16_A0498H16_A1337H16_A0453H16_A0395
REUT264198 REUT_A0483REUT_A0484REUT_A1274REUT_A0439REUT_A0363
RCAS383372 RCAS_3053RCAS_1112RCAS_1219RCAS_3786RCAS_0332
PTHE370438 PTH_1027PTH_1026PTH_1045PTH_1049
PSYR223283 PSPTO_3977PSPTO_3978PSPTO_1694PSPTO_3981PSPTO_1990
PSYR205918 PSYR_1410PSYR_1409PSYR_3695PSYR_1406PSYR_3426
PSTU379731 PST_2808PST_2809PST_2669PST_2813PST_1828
PSP56811 PSYCPRWF_1452PSYCPRWF_1424PSYCPRWF_0383PSYCPRWF_0991
PSP312153 PNUC_1880PNUC_1879PNUC_0828PNUC_1892
PSP296591 BPRO_4093BPRO_4094BPRO_2703BPRO_0866
PRUM264731 GFRORF2468GFRORF2041GFRORF1439GFRORF2478
PPUT76869 PPUTGB1_4201PPUTGB1_4202PPUTGB1_1257PPUTGB1_4205PPUTGB1_3831
PPUT351746 PPUT_1246PPUT_1245PPUT_4062PPUT_1242PPUT_1602
PPUT160488 PP_1217PP_1216PP_1656PP_1213PP_4266
PPRO298386 PBPRA1117PBPRA1116PBPRA3082PBPRA1112PBPRA1016
PPEN278197 PEPE_1271PEPE_1272PEPE_1120PEPE_1115PEPE_1129
PNAP365044 PNAP_0512PNAP_0510PNAP_2537PNAP_0787
PMUL272843 PM0976PM0977PM1865PM0983PM0363
PMEN399739 PMEN_1272PMEN_1271PMEN_1735PMEN_1268PMEN_2616
PLUM243265 PLU2112PLU2111PLU0910PLU2107PLU3842
PING357804 PING_0719PING_0718PING_0530PING_0699PING_2278
PHAL326442 PSHAA1875PSHAA1876PSHAA0739PSHAA1938PSHAA1200
PFLU220664 PFL_4763PFL_4764PFL_4446PFL_4767PFL_1909
PFLU216595 PFLU4913PFLU4914PFLU4505PFLU4917PFLU4571
PFLU205922 PFL_4407PFL_4408PFL_4217PFL_4411PFL_1810
PENT384676 PSEEN4092PSEEN4093PSEEN1364PSEEN4096PSEEN1791
PCRY335284 PCRYO_0685PCRYO_0684PCRYO_0377PCRYO_1183
PCAR338963 PCAR_2338PCAR_2337PCAR_1287PCAR_1040PCAR_1431
PATL342610 PATL_2944PATL_2945PATL_3707PATL_2948PATL_2898
PARC259536 PSYC_0710PSYC_0709PSYC_0343PSYC_1203
PAER208964 PA0967PA0966PA0934PA0963PA1543
PAER208963 PA14_51780PA14_51790PA14_52180PA14_51820PA14_44500
OIHE221109 OB2036OB2037OB2024OB2019OB2025
NSP103690 ALL2894ALL0375ALL1549ALL2436ALR4582
NOCE323261 NOC_0140NOC_0139NOC_1300NOC_0302NOC_0169
NMUL323848 NMUL_A2719NMUL_A2720NMUL_A2505NMUL_A0603NMUL_A0935
NMEN374833 NMCC_1124NMCC_1880NMCC_1648NMCC_1676NMCC_1572
NMEN272831 NMC1144NMC0259NMC1655NMC1684NMC1580
NMEN122587 NMA1412NMA2221NMA1991NMA2019NMA1920
NMEN122586 NMB_1243NMB_0265NMB_1735NMB_0466NMB_1662
NGON242231 NGO0760NGO1730NGO1382NGO1489NGO1311
NEUT335283 NEUT_0284NEUT_0283NEUT_0616NEUT_0262
NEUR228410 NE0213NE0212NE2252NE0181
MXAN246197 MXAN_4969MXAN_4972MXAN_3204MXAN_4684MXAN_5352
MSUC221988 MS0713MS0712MS0241MS0708MS0870
MSP400668 MMWYL1_2190MMWYL1_2189MMWYL1_1253MMWYL1_2187MMWYL1_2232
MPET420662 MPE_A0327MPE_A3236MPE_A1578MPE_A1070MPE_A3812
MMAG342108 AMB3216AMB3218AMB2253AMB2849
MFLA265072 MFLA_2344MFLA_2353MFLA_1298MFLA_2384MFLA_2383
MCAP243233 MCA_1223MCA_1222MCA_1920MCA_1776MCA_0816
MAVI243243 MAV_3473MAV_3474MAV_3464MAV_3447
MAQU351348 MAQU_1704MAQU_1705MAQU_2238MAQU_1707MAQU_2814
MAER449447 MAE_52930MAE_10280MAE_53150MAE_37270MAE_40610
LWEL386043 LWE1545LWE1546LWE1536LWE1532LWE1537
LSPH444177 BSPH_3938BSPH_3908BSPH_3901BSPH_3913
LSAK314315 LSA0367LSA0366LSA0737LSA0864LSA1276
LREU557436 LREU_0528LREU_0527LREU_0721LREU_0724
LPNE400673 LPC_1000LPC_0713LPC_0872LPC_0892
LPNE297246 LPP1534LPP1251LPP1413LPP1434
LPNE297245 LPL1449LPL1251LPL1571LPL1550
LPNE272624 LPG1576LPG1288LPG1457LPG1478
LMON265669 LMOF2365_1551LMOF2365_1552LMOF2365_1542LMOF2365_1538LMOF2365_1543
LMON169963 LMO1532LMO1533LMO1523LMO1519LMO1524
LLAC272623 L0267L0266L0213L0346L22735
LLAC272622 LACR_2515LACR_2516LACR_0092LACR_2226LACR_0657
LJOH257314 LJ_0468LJ_0467LJ_1394LJ_1391LJ_1474
LINN272626 LIN1567LIN1568LIN1558LIN1554LIN1559
LGAS324831 LGAS_0415LGAS_0414LGAS_0857LGAS_0860LGAS_0827
LDEL390333 LDB1613LDB1614LDB0889LDB1308
LDEL321956 LBUL_1492LBUL_1493LBUL_0813LBUL_1222
LCHO395495 LCHO_3954LCHO_3953LCHO_1899LCHO_4013
LCAS321967 LSEI_0769LSEI_1539LSEI_1526LSEI_1557
LBRE387344 LVIS_1230LVIS_1231LVIS_0728LVIS_0736LVIS_1376
LACI272621 LBA0411LBA0410LBA0932LBA0936LBA1242
KPNE272620 GKPORF_B1537GKPORF_B1538GKPORF_B2460GKPORF_B1542GKPORF_B4783
JSP375286 MMA_0311MMA_0310MMA_1486MMA_3099
ILOI283942 IL1085IL1086IL0804IL1089IL1850
HSOM228400 HSM_0143HSM_0142HSM_1986HSM_0857HSM_0362
HSOM205914 HS_0270HS_0269HS_0095HS_1223HS_1201
HMOD498761 HM1_1829HM1_1828HM1_1843HM1_1848
HINF71421 HI_0312HI_0313HI_0334HI_0317HI_1230
HINF374930 CGSHIEE_01495CGSHIEE_01490CGSHIEE_01330CGSHIEE_01440CGSHIEE_03885
HINF281310 NTHI0430NTHI0431NTHI0452NTHI0435NTHI1938
HHAL349124 HHAL_2213HHAL_2212HHAL_1740HHAL_2226
HDUC233412 HD_1757HD_1758HD_1185HD_0599HD_1818
HCHE349521 HCH_04922HCH_04923HCH_01807HCH_04927
HAUR316274 HAUR_2295HAUR_2516HAUR_4475HAUR_4379
HARS204773 HEAR0258HEAR0257HEAR1802HEAR2844
GVIO251221 GLR2884GLR2748GLL1928GLR2747
GURA351605 GURA_1413GURA_1414GURA_3160GURA_2196GURA_2616
GTHE420246 GTNG_2521GTNG_2522GTNG_2509GTNG_2510
GSUL243231 GSU_1077GSU_1076GSU_2236GSU_1463GSU_1526
GMET269799 GMET_0746GMET_0745GMET_2325GMET_1357GMET_1422
GKAU235909 GK2591GK2592GK2578GK2572GK2579
GFOR411154 GFO_0168GFO_0181GFO_3090GFO_0464
FTUL458234 FTA_1136FTA_0982FTA_0303FTA_0024FTA_1888
FTUL418136 FTW_0920FTW_1070FTW_0783FTW_1997FTW_0154
FTUL401614 FTN_0891FTN_1025FTN_1518FTN_0129FTN_1633
FTUL393115 FTF1013CFTF0658FTF1508CFTF0007FTF0078
FTUL393011 FTH_1052FTH_0911FTH_0284FTH_0020FTH_1718
FTUL351581 FTL_1077FTL_0932FTL_0285FTL_0020FTL_1782
FPHI484022 FPHI_1721FPHI_1568FPHI_1125FPHI_0695FPHI_0975
FNUC190304 FN1217FN1482FN0299FN1483
FMAG334413 FMG_0815FMG_0810FMG_0858FMG_0397
ESP42895 ENT638_2429ENT638_2430ENT638_3236ENT638_2434ENT638_0949
EFER585054 EFER_1212EFER_1211EFER_0280EFER_1206EFER_2548
EFAE226185 EF_0067EF_0066EF_1974EF_1970EF_1687
ECOL83334 ECS2570ECS2571ECS3644ECS2576ECS0522
ECOL585397 ECED1_2065ECED1_2066ECED1_3237ECED1_2071ECED1_0492
ECOL585057 ECIAI39_1189ECIAI39_1188ECIAI39_3203ECIAI39_1183ECIAI39_0202
ECOL585056 ECUMN_2158ECUMN_2159ECUMN_3113ECUMN_2164ECUMN_0508
ECOL585055 EC55989_2039EC55989_2040EC55989_3059EC55989_2045EC55989_0482
ECOL585035 ECS88_1917ECS88_1918ECS88_3052ECS88_1924ECS88_0466
ECOL585034 ECIAI1_1947ECIAI1_1948ECIAI1_2892ECIAI1_1953ECIAI1_0472
ECOL481805 ECOLC_1772ECOLC_1771ECOLC_0928ECOLC_1766ECOLC_3147
ECOL469008 ECBD_1778ECBD_1777ECBD_0945ECBD_1772ECBD_3187
ECOL439855 ECSMS35_1326ECSMS35_1325ECSMS35_2922ECSMS35_1320ECSMS35_0512
ECOL413997 ECB_01831ECB_01832ECB_02629ECB_01837ECB_00420
ECOL409438 ECSE_2036ECSE_2037ECSE_3042ECSE_2042ECSE_0494
ECOL405955 APECO1_910APECO1_911APECO1_3747APECO1_916APECO1_1546
ECOL364106 UTI89_C2064UTI89_C2065UTI89_C3154UTI89_C2070UTI89_C0496
ECOL362663 ECP_1804ECP_1805ECP_2765ECP_1810ECP_0530
ECOL331111 ECE24377A_2090ECE24377A_2091ECE24377A_3088ECE24377A_2096ECE24377A_0506
ECOL316407 ECK1861:JW1849:B1860ECK1862:JW1850:B1861ECK2778:JW2755:B2784ECK1867:JW1855:B1866ECK0463:JW0458:B0469
ECOL199310 C2274C2275C3347C2280C0588
ECAR218491 ECA2491ECA2492ECA3569ECA2496ECA1175
DRED349161 DRED_1662DRED_1661DRED_0733DRED_0757DRED_0732
DNOD246195 DNO_1176DNO_1177DNO_0017DNO_1118
DHAF138119 DSY2466DSY2467DSY2451DSY2431DSY2452
DDES207559 DDE_2322DDE_2323DDE_1569DDE_0012
DARO159087 DARO_4060DARO_4062DARO_2827DARO_0634
CVIO243365 CV_4215CV_4223CV_3702CV_3740CV_3772
CTET212717 CTC_02211CTC_02212CTC_02199CTC_02194CTC_02200
CSP501479 CSE45_0158CSE45_0159CSE45_0276CSE45_0987
CSAL290398 CSAL_1848CSAL_1847CSAL_1638CSAL_1844CSAL_2098
CPSY167879 CPS_2117CPS_2116CPS_4115CPS_2114CPS_3745
CPHY357809 CPHY_1334CPHY_1333CPHY_0548CPHY_0553CPHY_0547
CPER289380 CPR_1914CPR_1915CPR_1904CPR_1899CPR_1905
CPER195103 CPF_2203CPF_2204CPF_2193CPF_2188CPF_2194
CPER195102 CPE1947CPE1948CPE1938CPE1933CPE1939
CNOV386415 NT01CX_1833NT01CX_1844NT01CX_1849NT01CX_1843
CKLU431943 CKL_3144CKL_3131CKL_3126CKL_3132
CJAP155077 CJA_1031CJA_1030CJA_2575CJA_1027
CHYD246194 CHY_1522CHY_2223CHY_2204CHY_2027
CHUT269798 CHU_0373CHU_0028CHU_0111CHU_2005
CDIF272563 CD2805CD2806CD2744CD2739CD2745
CDES477974 DAUD_1362DAUD_1363DAUD_0901DAUD_0906
CBUR434922 COXBU7E912_0418COXBU7E912_0420COXBU7E912_1462COXBU7E912_0423
CBUR360115 COXBURSA331_A1756COXBURSA331_A1754COXBURSA331_A1533COXBURSA331_A1751
CBUR227377 CBU_1570CBU_1568CBU_1375CBU_1565
CBOT536232 CLM_3475CLM_3476CLM_3464CLM_3459CLM_3465
CBOT515621 CLJ_B3335CLJ_B3336CLJ_B3324CLJ_B3319CLJ_B3325
CBOT508765 CLL_A1023CLL_A1031CLL_A1036CLL_A1030
CBOT498213 CLD_1470CLD_1469CLD_1481CLD_1486CLD_1480
CBOT441772 CLI_3129CLI_3130CLI_3118CLI_3113CLI_3119
CBOT441771 CLC_2972CLC_2973CLC_2961CLC_2956CLC_2962
CBOT441770 CLB_3099CLB_3100CLB_3088CLB_3083CLB_3089
CBOT36826 CBO3070CBO3071CBO3059CBO3054CBO3060
CBEI290402 CBEI_1531CBEI_1530CBEI_1540CBEI_1545CBEI_1539
CACE272562 CAC2284CAC2274CAC2269CAC2275
BWEI315730 BCERKBAB4_4267BCERKBAB4_4268BCERKBAB4_4254BCERKBAB4_4249BCERKBAB4_4255
BVIE269482 BCEP1808_0653BCEP1808_0654BCEP1808_1438BCEP1808_2831BCEP1808_2889
BTHU412694 BALH_3999BALH_4000BALH_3988BALH_3984BALH_3989
BTHU281309 BT9727_4153BT9727_4154BT9727_4140BT9727_4135BT9727_4141
BTHE226186 BT_3285BT_1978BT_0872BT_3267
BTHA271848 BTH_I1247BTH_I1248BTH_I2597BTH_I0560BTH_I0493
BSUB BSU27730BSU27740BSU27600BSU27550BSU27610
BSP36773 BCEP18194_A3774BCEP18194_A3775BCEP18194_A4614BCEP18194_A6052BCEP18194_A6114
BPUM315750 BPUM_2415BPUM_2416BPUM_2401BPUM_2396BPUM_2402
BPSE320373 BURPS668_3366BURPS668_3365BURPS668_1709BURPS668_0675BURPS668_0588
BPSE320372 BURPS1710B_A3683BURPS1710B_A3682BURPS1710B_A2044BURPS1710B_A0902BURPS1710B_A0814
BPSE272560 BPSL2899BPSL2898BPSL1946BPSL0644BPSL0540
BPET94624 BPET0901BPET0904BPET1735BPET4847BPET0461
BPER257313 BP3421BP3418BP3587BP0709BP0264
BPAR257311 BPP3571BPP3568BPP0115BPP4020
BMAL320389 BMA10247_2532BMA10247_2533BMA10247_0960BMA10247_2406BMA10247_2949
BMAL320388 BMASAVP1_A0266BMASAVP1_A0267BMASAVP1_A1542BMASAVP1_A2752BMASAVP1_A0069
BMAL243160 BMA_2353BMA_2354BMA_1098BMA_0193
BLIC279010 BL01143BL01144BL01124BL05288BL01126
BHAL272558 BH1224BH1242BH1252BH1241
BFRA295405 BF0163BF3689BF2379BF0099
BFRA272559 BF0128BF3480BF2463BF0112
BCLA66692 ABC1555ABC1554ABC1570ABC1577ABC1569
BCER572264 BCA_4531BCA_4532BCA_4518BCA_4514BCA_4519
BCER405917 BCE_4505BCE_4506BCE_4491BCE_4485BCE_4492
BCER315749 BCER98_3137BCER98_3138BCER98_3123BCER98_3118BCER98_3124
BCER288681 BCE33L4164BCE33L4165BCE33L4151BCE33L4145BCE33L4152
BCER226900 BC_4414BC_4415BC_4401BC_4397BC_4402
BCEN331272 BCEN2424_0688BCEN2424_0689BCEN2424_1473BCEN2424_2725BCEN2424_2784
BCEN331271 BCEN_0205BCEN_0206BCEN_0991BCEN_2113BCEN_2170
BBRO257310 BB4006BB4003BB3776BB0115BB4493
BANT592021 BAA_4667BAA_4668BAA_4654BAA_4650BAA_4655
BANT568206 BAMEG_4684BAMEG_4685BAMEG_4671BAMEG_4667BAMEG_4672
BANT261594 GBAA4650GBAA4651GBAA4637GBAA4632GBAA4638
BANT260799 BAS4315BAS4316BAS4302BAS4297BAS4303
BAMY326423 RBAM_024840RBAM_024850RBAM_024710RBAM_024660RBAM_024720
BAMB398577 BAMMC406_0607BAMMC406_0608BAMMC406_1398BAMMC406_2643BAMMC406_2702
BAMB339670 BAMB_0581BAMB_0582BAMB_1358BAMB_2776BAMB_2844
AVAR240292 AVA_1008AVA_2820AVA_4989AVA_0247AVA_2470
ASP76114 EBA3958EBA3959EBA6528EBA4339
ASP62977 ACIAD2615ACIAD2614ACIAD3068ACIAD0609
ASP62928 AZO0601AZO0602AZO1688AZO3239
ASP232721 AJS_3694AJS_3700AJS_3149AJS_0874AJS_4134
ASAL382245 ASA_0736ASA_0735ASA_3478ASA_2844ASA_2089
APLE416269 APL_0284APL_0283APL_0405APL_1149APL_0266
AORE350688 CLOS_1725CLOS_1726CLOS_1714CLOS_1709CLOS_1715
AMET293826 AMET_2339AMET_2338AMET_2353AMET_2359AMET_2352
AMAR329726 AM1_4753AM1_2883AM1_2514AM1_4421AM1_2945
AHYD196024 AHA_3647AHA_3648AHA_0818AHA_1521AHA_2210
AFER243159 AFE_2962AFE_2963AFE_2473AFE_2968
AEHR187272 MLG_2777MLG_2494MLG_1097MLG_2665
ADEH290397 ADEH_0952ADEH_2550ADEH_2533ADEH_0751
ACEL351607 ACEL_1343ACEL_1344ACEL_1338ACEL_1334ACEL_1339
ABOR393595 ABO_0753ABO_0752ABO_1623ABO_0749
ABAU360910 BAV2780BAV2778BAV1100BAV0115BAV3106
ABAC204669 ACID345_4544ACID345_4725ACID345_0175ACID345_3608
AAVE397945 AAVE_4237AAVE_4240AAVE_1588AAVE_3637AAVE_4787


Organism features enriched in list (features available for 320 out of the 336 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 9.719e-77192
Arrangment:Clusters 0.00044991617
Arrangment:Pairs 2.044e-887112
Disease:Pneumonia 0.00068011212
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00125901111
Disease:Wide_range_of_infections 0.00125901111
Endospores:No 1.132e-786211
Endospores:Yes 4.828e-104953
GC_Content_Range4:40-60 0.0003306142224
GC_Content_Range7:0-30 0.00054251547
GC_Content_Range7:50-60 0.001409572107
Genome_Size_Range5:0-2 7.515e-2136155
Genome_Size_Range5:4-6 7.413e-13140184
Genome_Size_Range9:1-2 3.224e-1236128
Genome_Size_Range9:4-5 0.00021846896
Genome_Size_Range9:5-6 8.224e-97288
Gram_Stain:Gram_Pos 9.607e-7107150
Habitat:Host-associated 0.003488899206
Habitat:Multiple 0.0000195120178
Habitat:Specialized 0.00167981953
Habitat:Terrestrial 0.00479712431
Motility:Yes 0.0003385166267
Optimal_temp.:30-37 0.00025591718
Optimal_temp.:35-37 0.00036691313
Oxygen_Req:Anaerobic 0.002847744102
Oxygen_Req:Facultative 1.944e-14153201
Pathogenic_in:Animal 0.00726064566
Pathogenic_in:Human 0.0002919136213
Pathogenic_in:No 0.0001964104226
Shape:Coccus 0.00146755782
Shape:Rod 6.246e-9224347
Shape:Sphere 0.0003943319
Shape:Spiral 8.395e-8434
Temp._range:Hyperthermophilic 2.855e-6223
Temp._range:Mesophilic 0.0000425278473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 134
Effective number of orgs (counting one per cluster within 468 clusters): 119

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCAV227941 ncbi Chlamydophila caviae GPIC1
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse1
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  RUVB   RUVA   EG10835   EG10097   EG10051   
WPIP955
WPIP80849
UURE95667 UU488
UURE95664 UUR10_0545
UPAR505682 UPA3_0506
UMET351160 RCIX2629
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1717
TTHE262724 TT_C1355
TPEN368408
TPAL243276 TP_0543
TLET416591 TLET_1659
TKOD69014
TDEN243275 TDE_1863
TACI273075
STOK273063
SSOL273057
SMAR399550
SACI330779
RTYP257363
RSP101510 RHA1_RO06900
RSAL288705 RSAL33209_1995
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSP117 RB5847
PMOB403833 PMOB_1065
PMAR167546 P9301ORF_1921
PMAR167542 P9515ORF_1962
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244
NSEN222891
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_0227
MMAR426368 MMARC7_1686
MMAR402880 MMARC5_0915
MMAR368407
MMAR267377 MMP0660
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0891
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LXYL281090 LXX10830
IHOS453591
HWAL362976
HSP64091
HSAL478009
HNEP81032 HNE_0147
HMUK485914
HMAR272569
HBUT415426
ERUM302409
ERUM254945
ECHA205920
ECAN269484
CTRA471473 CTLON_0758
CTRA471472 CTL0763
CSUL444179
CRUT413404 RMAG_0396
CPNE182082 CPB0646
CPNE138677 CPJ0620
CPNE115713 CPN0620
CPNE115711 CP_0127
CPEL335992 SAR11_1213
CMUR243161 TC_0788
CMIC443906 CMM_1809
CMIC31964 CMS0723
CMET456442 MBOO_0112
CMAQ397948
CKOR374847
CFEL264202 CF0886
CCAV227941 CCA_00120
CAULO CC3236
CABO218497 CAB119
BXEN266265
BTUR314724
BTRI382640 BT_2375
BSP107806 BU316
BQUI283165 BQ11870
BHER314723
BHEN283166 BH14890
BGAR290434
BBUR224326
BBAC360095 BARBAKC583_0149
BAPH372461
BAPH198804 BUSG306
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2297
APHA212042
APER272557
AMAR234826
ALAI441768 ACL_0829
AFUL224325
AAUR290340 AAUR_2293


Organism features enriched in list (features available for 125 out of the 134 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.179e-7392
Arrangment:Pairs 0.000076010112
Disease:Pharyngitis 3.729e-688
Disease:Rocky_Mountain_Spotted_Fever 0.009671033
Disease:bronchitis_and_pneumonitis 3.729e-688
Endospores:No 1.983e-872211
GC_Content_Range4:0-40 7.740e-769213
GC_Content_Range4:60-100 0.000115316145
GC_Content_Range7:0-30 3.373e-102947
GC_Content_Range7:50-60 0.001333212107
GC_Content_Range7:60-70 0.000106714134
Genome_Size_Range5:0-2 2.014e-3187155
Genome_Size_Range5:2-4 0.004604131197
Genome_Size_Range5:4-6 4.202e-175184
Genome_Size_Range5:6-10 0.0006816247
Genome_Size_Range9:0-1 2.182e-142427
Genome_Size_Range9:1-2 3.802e-1663128
Genome_Size_Range9:3-4 0.0037977877
Genome_Size_Range9:4-5 4.262e-8396
Genome_Size_Range9:5-6 3.394e-8288
Gram_Stain:Gram_Neg 0.000618156333
Gram_Stain:Gram_Pos 1.128e-107150
Habitat:Host-associated 0.000085862206
Habitat:Multiple 3.664e-147178
Habitat:Specialized 0.00002772453
Motility:Yes 0.002168944267
Optimal_temp.:100 0.009671033
Optimal_temp.:35-40 0.009671033
Optimal_temp.:85 0.002034244
Oxygen_Req:Anaerobic 0.000367135102
Oxygen_Req:Facultative 6.066e-721201
Pathogenic_in:Ruminant 0.009671033
Salinity:Extreme_halophilic 0.005602857
Shape:Irregular_coccus 4.112e-91517
Shape:Pleomorphic 0.001556368
Shape:Rod 1.299e-945347
Shape:Sphere 4.596e-91619
Temp._range:Hyperthermophilic 3.877e-91823
Temp._range:Mesophilic 3.821e-781473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5386 (methylglyoxal degradation I)3052490.5444
SERDEG-PWY (L-serine degradation)3492540.4267
THISYN-PWY (thiamin biosynthesis I)5023210.4091
PWY-6139 (CMP-N-acetylneuraminate biosynthesis II (bacteria))3402460.4051
PWY-5686 (uridine-5'-phosphate biosynthesis)5263290.4025



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  RUVA   EG10835   EG10097   EG10051   
RUVB0.9999870.9988110.9995990.998734
RUVA0.9985020.9995770.998606
EG108350.9992410.99934
EG100970.998967
EG10051



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PAIRWISE BLAST SCORES:

  RUVB   RUVA   EG10835   EG10097   EG10051   
RUVB0.0f0----
RUVA-0.0f0---
EG10835--0.0f0--
EG10097---0.0f0-
EG10051----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- RUVABC-CPLX (resolvasome) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.400, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9985 RUVA (ruvA) EG10923-MONOMER (branch migration of Holliday structures; repair)
   *in cand* 0.9994 0.9987 RUVB (ruvB) EG10924-MONOMER (branch migration of Holliday structures; repair helicase)
             0.9987 0.9964 EG10925 (ruvC) EG10925-MONOMER (Holliday junction nuclease; resolution of structures; repair)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9986 EG10051 (apt) ADENPRIBOSYLTRAN-MONOMER (Apt)
   *in cand* 0.9995 0.9990 EG10097 (aspS) ASPS-MONOMER (aspartyl-tRNA synthetase)
   *in cand* 0.9992 0.9985 EG10835 (relA) RELA-MONOMER (GDP pyrophosphokinase / GTP pyrophosphokinase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

RUVA RUVB (centered at RUVA)
EG10051 (centered at EG10051)
EG10097 (centered at EG10097)
EG10835 (centered at EG10835)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  RUVB   RUVA   EG10835   EG10097   EG10051   
415/623411/623402/623406/623401/623
AAEO224324:0:Tyes--0592-
AAUR290340:2:Tyes--0--
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