CANDIDATE ID: 751

CANDIDATE ID: 751

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9914120e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- M004 (rpe) (b3386)
   Products of gene:
     - RIBULP3EPIM-MONOMER (ribulose phosphate 3-epimerase)
       Reactions:
        D-ribulose-5-phosphate  =  D-xylulose-5-phosphate
         In pathways
         PWY-5257 (PWY-5257)
         PENTOSE-P-PWY (pentose phosphate pathway)
         PHOTOALL-PWY (PHOTOALL-PWY)
         DARABCAT-PWY (DARABCAT-PWY)
         RIBITOLUTIL-PWY (RIBITOLUTIL-PWY)
         P122-PWY (P122-PWY)
         P21-PWY (P21-PWY)
         PWY-1861 (PWY-1861)
         P185-PWY (P185-PWY)
         P124-PWY (P124-PWY)
         NONOXIPENT-PWY (pentose phosphate pathway (non-oxidative branch))
         PWY-5723 (PWY-5723)
         CALVIN-PWY (CALVIN-PWY)

- EG11957 (alsE) (b4085)
   Products of gene:
     - EG11957-MONOMER (allulose-6-phosphate 3-epimerase)
       Reactions:
        D-allulose-6-phosphate  ->  D-fructose-6-phosphate
         In pathways
         PWY0-44 (D-allose degradation)

- EG11028 (trpE) (b1264)
   Products of gene:
     - ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
     - ANTHRANSYN-CPLX (anthranilate synthase)
       Reactions:
        chorismate + L-glutamine  ->  anthranilate + pyruvate + L-glutamate + H+
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PWY-5958 (PWY-5958)
         TRPSYN-PWY (tryptophan biosynthesis)

- EG10682 (pabA) (b3360)
   Products of gene:
     - PABASYN-COMPII-MONOMER (PabA)
     - PABASYN-CPLX (aminodeoxychorismate synthase)
       Reactions:
        L-glutamine + chorismate  =  4-amino-4-deoxychorismate + L-glutamate
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         FOLSYN-PWY (tetrahydrofolate biosynthesis)
         PWY-6543 (PWY-6543)
     - PABSYNMULTI-CPLX (para-aminobenzoate synthase multi-enzyme complex)

- EG10047 (apaG) (b0050)
   Products of gene:
     - EG10047-MONOMER (hypothetical protein)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 256
Effective number of orgs (counting one per cluster within 468 clusters): 190

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py25
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79015
TTHE300852 ncbi Thermus thermophilus HB84
TTHE262724 ncbi Thermus thermophilus HB274
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
TERY203124 ncbi Trichodesmium erythraeum IMS1014
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-35
SSP84588 ncbi Synechococcus sp. WH 81024
SSP64471 ncbi Synechococcus sp. CC93114
SSP644076 Silicibacter sp. TrichCH4B4
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSP292414 ncbi Ruegeria sp. TM10404
SSP1148 ncbi Synechocystis sp. PCC 68034
SSP1131 Synechococcus sp. CC96054
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SALA317655 ncbi Sphingopyxis alaskensis RB22565
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp5
PMAR74547 ncbi Prochlorococcus marinus MIT 93134
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MXAN246197 ncbi Myxococcus xanthus DK 16225
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS105
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT84
MAER449447 ncbi Microcystis aeruginosa NIES-8434
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LINN272626 ncbi Listeria innocua Clip112624
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HNEP81032 Hyphomonas neptunium5
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HHAL349124 ncbi Halorhodospira halophila SL14
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25945
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DRED349161 ncbi Desulfotomaculum reducens MI-14
DRAD243230 ncbi Deinococcus radiodurans R14
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA5
CSP78 Caulobacter sp.5
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)4
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10624
CJAP155077 Cellvibrio japonicus5
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CBLO203907 ncbi Candidatus Blochmannia floridanus4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CAULO ncbi Caulobacter crescentus CB155
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBRO257310 ncbi Bordetella bronchiseptica RB505
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-55
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  M004   EG11957   EG11028   EG10682   EG10047   
ZMOB264203 ZMO0018ZMO0018ZMO0468ZMO0201
YPSE349747 YPSIP31758_3962YPSIP31758_3962YPSIP31758_1932YPSIP31758_3948YPSIP31758_3445
YPSE273123 YPTB3746YPTB3746YPTB2130YPTB3732YPTB0632
YPES386656 YPDSF_0082YPDSF_0082YPDSF_0925YPDSF_0097YPDSF_3143
YPES377628 YPN_3910YPN_3910YPN_1677YPN_3895YPN_0365
YPES360102 YPA_3314YPA_3314YPA_1568YPA_3300YPA_4085
YPES349746 YPANGOLA_A3723YPANGOLA_A3723YPANGOLA_A2312YPANGOLA_A3705YPANGOLA_A0773
YPES214092 YPO0155YPO0155YPO2208YPO0169YPO0491
YPES187410 Y3938Y3938Y2051Y3953Y3684
YENT393305 YE3971YE3971YE2209YE3958YE0629
XORY360094 XOOORF_0822XOOORF_0822XOOORF_0825XOOORF_0639XOOORF_1155
XORY342109 XOO3827XOO3827XOO3824XOO3938XOO3539
XORY291331 XOO4052XOO4052XOO4049XOO4163XOO3749
XFAS405440 XFASM12_0177XFASM12_0179XFASM12_0180XFASM12_1353
XFAS183190 PD_0168PD_0170PD_0171PD_1209
XFAS160492 XF0208XF0210XF0211XF2149
XCAM487884 XCC-B100_0491XCC-B100_0491XCC-B100_0494XCC-B100_0497XCC-B100_3561
XCAM316273 XCAORF_4051XCAORF_4051XCAORF_4048XCAORF_4045XCAORF_0970
XCAM314565 XC_0469XC_0469XC_0473XC_0481XC_3441
XCAM190485 XCC0455XCC0455XCC0459XCC0467XCC0790
XAXO190486 XAC0472XAC0472XAC0476XAC0478XAC0862
XAUT78245 XAUT_1911XAUT_1911XAUT_4378XAUT_4377XAUT_0470
WSUC273121 WS0219WS0219WS0088WS2172
VVUL216895 VV1_1386VV1_3064VV1_1311VV1_0664
VVUL196600 VV2985VV1221VV3055VV0477
VPAR223926 VP2741VP2741VP1956VP2798VP0335
VFIS312309 VF2288VF2288VF1033VF2285
VEIS391735 VEIS_0587VEIS_1212VEIS_1211VEIS_0586
VCHO345073 VC0395_A2202VC0395_A0796VC0395_A2196VC0395_A2860
VCHO VC2625VC1174VC2619VC0442
TTUR377629 TERTU_3138TERTU_3138TERTU_3137TERTU_3129TERTU_3146
TTHE300852 TTHA0106TTHA0106TTHA1844TTHA1843
TTHE262724 TT_C1898TT_C1898TT_C1493TT_C1492
TTEN273068 TTE1498TTE1498TTE1583TTE1582
TSP1755 TETH514_1747TETH514_1747TETH514_1869TETH514_1868
TPSE340099 TETH39_1311TETH39_1311TETH39_0888TETH39_0889
TERY203124 TERY_2606TERY_2606TERY_3792TERY_5029
TELO197221 TLL2369TLL2369TLL1672TLR1471
TDEN292415 TBD_2230TBD_2230TBD_2228TBD_2224TBD_2231
STYP99287 STM3483STM3483STM1723STM3469STM0089
STHE292459 STH1355STH1355STH1407STH1408
SSP94122 SHEWANA3_3888SHEWANA3_3888SHEWANA3_1520SHEWANA3_0606SHEWANA3_3210
SSP84588 SYNW1115OR3469SYNW1115OR3469SYNW2045OR2765SYNW2315OR0962
SSP64471 GSYN1800GSYN1800GSYN0484GSYN2810
SSP644076 SCH4B_0617SCH4B_0617SCH4B_4617SCH4B_4614
SSP321332 CYB_2047CYB_2047CYB_0535CYB_2417
SSP321327 CYA_0084CYA_0084CYA_2136CYA_2654
SSP292414 TM1040_3710TM1040_3710TM1040_1143TM1040_1141
SSP1148 SLL0807SLL0807SLR0738SLR0055
SSP1131 SYNCC9605_1252SYNCC9605_1252SYNCC9605_0398SYNCC9605_2446
SSON300269 SSO_3517SSO_3517SSO_1879SSO_3491SSO_0058
SSED425104 SSED_4259SSED_4259SSED_1686SSED_0806SSED_0963
SRUB309807 SRU_0007SRU_1662SRU_1665SRU_0421
SPRO399741 SPRO_4601SPRO_4601SPRO_2667SPRO_4583SPRO_0723
SPEA398579 SPEA_0244SPEA_1590SPEA_3519SPEA_0861
SONE211586 SO_0292SO_0292SO_3019SO_0613SO_3640
SLOI323850 SHEW_0219SHEW_0219SHEW_2251SHEW_0575SHEW_0878
SLAC55218 SL1157_0319SL1157_0319SL1157_2768SL1157_2766
SHIGELLA RPERPETRPEPABAAPAG
SHAL458817 SHAL_4076SHAL_1658SHAL_3613SHAL_0914
SGLO343509 SG2305SG2305SG1402SG2302SG0423
SFUM335543 SFUM_1951SFUM_1951SFUM_1776SFUM_1775
SFLE373384 SFV_3391SFV_3391SFV_1278SFV_3366SFV_0044
SFLE198214 AAN44866.1AAN44866.1AAN42880.1AAN44842.1AAN41713.1
SENT454169 SEHA_C3789SEHA_C3789SEHA_C1913SEHA_C3774SEHA_C0095
SENT321314 SCH_3415SCH_3415SCH_1719SCH_3403SCH_0084
SENT295319 SPA3348SPA3348SPA1154SPA3335SPA0090
SENT220341 STY4313STY4313STY1328STY4327STY0104
SENT209261 T4023T4023T1635T4036T0092
SDYS300267 SDY_3693SDY_3693SDY_1332SDY_3522SDY_0075
SDEN318161 SDEN_0267SDEN_0267SDEN_2450SDEN_3196SDEN_2889
SDEG203122 SDE_0746SDE_0746SDE_0747SDE_0752SDE_0736
SCO SCO1464SCO1464SCO2043SCO3851
SBOY300268 SBO_3373SBO_3373SBO_1802SBO_3342SBO_0039
SBAL402882 SHEW185_4077SHEW185_4077SHEW185_2722SHEW185_3758SHEW185_1045
SBAL399599 SBAL195_4195SBAL195_4195SBAL195_2801SBAL195_3884SBAL195_1078
SAVE227882 SAV6880SAV6880SAV6171SAV4335
SALA317655 SALA_3128SALA_3128SALA_1174SALA_0837SALA_1087
SACI56780 SYN_01763SYN_01763SYN_01947SYN_01946
RSOL267608 RSC2879RSC2879RSC2881RSC2882RSC2878
RRUB269796 RRU_A2402RRU_A2402RRU_A1891RRU_A1895RRU_A0270
RMET266264 RMET_3176RMET_3176RMET_3178RMET_3179RMET_3175
RFER338969 RFER_0532RFER_3607RFER_3605RFER_0531
REUT381666 H16_A3317H16_A3317H16_A3319H16_A3320H16_A3316
REUT264198 REUT_A3021REUT_A3021REUT_A3023REUT_A3024REUT_A3020
PTHE370438 PTH_1779PTH_1779PTH_1628PTH_1627
PSYR223283 PSPTO_0566PSPTO_0566PSPTO_0568PSPTO_0592PSPTO_0550
PSYR205918 PSYR_4611PSYR_4611PSYR_4609PSYR_4581PSYR_4628
PSTU379731 PST_0742PST_0742PST_0744PST_0745PST_0725
PSP312153 PNUC_0149PNUC_0148PNUC_0147PNUC_0150
PSP296591 BPRO_4466BPRO_4457BPRO_4455BPRO_4467
PPUT76869 PPUTGB1_0446PPUTGB1_0446PPUTGB1_0448PPUTGB1_0450PPUTGB1_0431
PPUT351746 PPUT_0449PPUT_0449PPUT_0451PPUT_0453PPUT_0434
PPUT160488 PP_0415PP_0415PP_0417PP_0420PP_0400
PPRO298386 PBPRA0284PBPRA2486PBPRA0288PBPRA0401
PNAP365044 PNAP_3660PNAP_3654PNAP_3652PNAP_3661
PMEN399739 PMEN_3999PMEN_3999PMEN_3997PMEN_3946PMEN_4014
PMAR74547 PMT0569PMT0569PMT1711PMT2067
PLUT319225 PLUT_1649PLUT_1649PLUT_1468PLUT_0356
PLUM243265 PLU0086PLU0086PLU2462PLU0393PLU0608
PING357804 PING_0167PING_0167PING_1060PING_3615
PHAL326442 PSHAA2710PSHAA1293PSHAA0192PSHAA2636
PFLU220664 PFL_5631PFL_5631PFL_5629PFL_5623PFL_5650
PFLU216595 PFLU5563PFLU5563PFLU5561PFLU5560PFLU5579
PFLU205922 PFL_5120PFL_5120PFL_5118PFL_5115PFL_5136
PENT384676 PSEEN0442PSEEN0442PSEEN0444PSEEN0447PSEEN0427
PCAR338963 PCAR_0240PCAR_0240PCAR_0730PCAR_0731
PATL342610 PATL_0659PATL_0659PATL_2829PATL_0653PATL_3422
PAER208964 PA0607PA0607PA1001PA0649PA0591
PAER208963 PA14_07910PA14_07910PA14_51360PA14_08340PA14_07710
OIHE221109 OB1511OB1511OB0527OB0701
NSP103690 ALR0782ALR0782ALL0328ALL0269
NOCE323261 NOC_2492NOC_2492NOC_2494NOC_2495NOC_1346
NMUL323848 NMUL_A2371NMUL_A2371NMUL_A2369NMUL_A2564NMUL_A2372
NMEN374833 NMCC_1125NMCC_1125NMCC_0965NMCC_0909
NMEN272831 NMC1145NMC1145NMC1013NMC0947
NMEN122587 NMA1413NMA1413NMA1247NMA1163
NMEN122586 NMB_1244NMB_1244NMB_1021NMB_0966
NGON242231 NGO0758NGO0758NGO0872NGO1204
NEUT335283 NEUT_2096NEUT_2096NEUT_2098NEUT_0135NEUT_0842
NEUR228410 NE2148NE2150NE0014NE1573
NARO279238 SARO_0104SARO_0104SARO_2021SARO_2022SARO_2660
MXAN246197 MXAN_6297MXAN_6297MXAN_6072MXAN_1589MXAN_1536
MTHE264732 MOTH_0914MOTH_0914MOTH_1342MOTH_1341
MSP409 M446_5429M446_5398M446_0052M446_6540
MSP400668 MMWYL1_1057MMWYL1_1057MMWYL1_1061MMWYL1_1050
MPET420662 MPE_A3466MPE_A2786MPE_A3463MPE_A3462MPE_A3468
MMAR394221 MMAR10_2925MMAR10_2925MMAR10_1403MMAR10_1401MMAR10_0491
MMAG342108 AMB1379AMB1379AMB1813AMB2861AMB4224
MFLA265072 MFLA_2472MFLA_2472MFLA_2471MFLA_2468MFLA_2636
MEXT419610 MEXT_0991MEXT_4668MEXT_3906MEXT_0370
MCAP243233 MCA_2582MCA_2582MCA_2584MCA_2585MCA_0241
MAQU351348 MAQU_3515MAQU_3515MAQU_3517MAQU_3518
MAER449447 MAE_61690MAE_61690MAE_23290MAE_23330
LWEL386043 LWE1837LWE1837LWE1649LWE2697
LSPH444177 BSPH_1495BSPH_1495BSPH_3628BSPH_0095
LMON265669 LMOF2365_1846LMOF2365_1846LMOF2365_1655LMOF2365_2736
LMON169963 LMO1818LMO1818LMO1633LMO2749
LLAC272623 L0047L0047L0054L0178
LINN272626 LIN1932LIN1932LIN1674LIN2892
LCHO395495 LCHO_3899LCHO_3897LCHO_3878LCHO_3900
KPNE272620 GKPORF_B3098GKPORF_B3098GKPORF_B0277GKPORF_B3086GKPORF_B4326
JSP375286 MMA_0237MMA_0237MMA_0235MMA_0234MMA_0238
ILOI283942 IL2324IL2324IL1751IL2321IL2233
HNEP81032 HNE_3370HNE_3370HNE_1790HNE_1789HNE_2671
HMOD498761 HM1_2140HM1_2140HM1_1916HM1_1917
HHAL349124 HHAL_1048HHAL_1048HHAL_2082HHAL_2081
HCHE349521 HCH_06112HCH_06112HCH_06125HCH_06126HCH_06102
HARS204773 HEAR0202HEAR0202HEAR0200HEAR0199HEAR0204
GVIO251221 GLL3548GLL3548GLR1717GLR0883
GURA351605 GURA_0194GURA_0194GURA_1731GURA_1732
GTHE420246 GTNG_1031GTNG_1031GTNG_2138GTNG_0067
GSUL243231 GSU_3374GSU_3374GSU_2383GSU_2382
GMET269799 GMET_0067GMET_0067GMET_2497GMET_2496
GKAU235909 GK1178GK1178GK2204GK0067
GBET391165 GBCGDNIH1_2141GBCGDNIH1_2141GBCGDNIH1_0824GBCGDNIH1_0821GBCGDNIH1_0088
ESP42895 ENT638_3799ENT638_3799ENT638_2204ENT638_3787ENT638_0599
ELIT314225 ELI_12550ELI_12550ELI_06485ELI_06505ELI_08250
EFER585054 EFER_3352EFER_4285EFER_1692EFER_3333EFER_0061
ECOO157 RPERPETRPE_1PABAAPAG
ECOL83334 ECS4228ECS4228ECS1836ECS4211ECS0055
ECOL585397 ECED1_4044ECED1_4819ECED1_1471ECED1_4024ECED1_0051
ECOL585057 ECIAI39_3864ECIAI39_4509ECIAI39_1601ECIAI39_3844ECIAI39_0053
ECOL585056 ECUMN_3844ECUMN_3844ECUMN_1563ECUMN_3823ECUMN_0052
ECOL585055 EC55989_3791EC55989_3791EC55989_1422EC55989_3766EC55989_0050
ECOL585035 ECS88_3771ECS88_4585ECS88_1399ECS88_3751ECS88_0055
ECOL585034 ECIAI1_3524ECIAI1_3524ECIAI1_1284ECIAI1_3499ECIAI1_0052
ECOL481805 ECOLC_0327ECOLC_3941ECOLC_2363ECOLC_0352ECOLC_3605
ECOL469008 ECBD_0361ECBD_3945ECBD_2358ECBD_0388ECBD_3565
ECOL439855 ECSMS35_3662ECSMS35_4551ECSMS35_1868ECSMS35_3642ECSMS35_0054
ECOL413997 ECB_03238ECB_03957ECB_01238ECB_03211ECB_00054
ECOL409438 ECSE_3647ECSE_4383ECSE_1313ECSE_3622ECSE_0051
ECOL405955 APECO1_3077APECO1_2365APECO1_425APECO1_3095APECO1_1932
ECOL364106 UTI89_C3884UTI89_C4681UTI89_C1533UTI89_C3863UTI89_C0057
ECOL362663 ECP_3471ECP_4327ECP_1312ECP_3451ECP_0052
ECOL331111 ECE24377A_3855ECE24377A_3855ECE24377A_1463ECE24377A_3830ECE24377A_0054
ECOL316407 ECK3373:JW3349:B3386ECK4078:JW4046:B4085ECK1258:JW1256:B1264ECK3348:JW3323:B3360ECK0051:JW0049:B0050
ECOL199310 C4156C5091C1730C4135C0063
ECAR218491 ECA4089ECA4089ECA2296ECA4066ECA3860
DRED349161 DRED_1716DRED_1716DRED_0248DRED_0249
DRAD243230 DR_1401DR_1791DR_1766DR_0228
DPSY177439 DP0795DP0795DP1619DP1620
DOLE96561 DOLE_2229DOLE_2229DOLE_1569DOLE_1568
DHAF138119 DSY2683DSY2683DSY3202DSY3275
DGEO319795 DGEO_1319DGEO_0983DGEO_0985DGEO_1993
DARO159087 DARO_3483DARO_3483DARO_3481DARO_3477DARO_3484
CVIO243365 CV_2182CV_2182CV_2179CV_2175CV_2183
CVES412965 COSY_0970COSY_0970COSY_0734COSY_0837COSY_0503
CSP78 CAUL_4780CAUL_4780CAUL_2771CAUL_2776CAUL_1660
CSAL290398 CSAL_2328CSAL_2328CSAL_2323CSAL_2321CSAL_0921
CRUT413404 RMAG_1071RMAG_0809RMAG_0931RMAG_0548
CPSY167879 CPS_0479CPS_0479CPS_3522CPS_0638
CPHY357809 CPHY_2484CPHY_2484CPHY_3848CPHY_3847
CPEL335992 SAR11_0317SAR11_0317SAR11_0925SAR11_0924
CJAP155077 CJA_2666CJA_2666CJA_2663CJA_2662CJA_0862
CDES477974 DAUD_1586DAUD_1586DAUD_1191DAUD_1190
CBLO203907 BFL570BFL570BFL426BFL568
CBEI290402 CBEI_1153CBEI_1153CBEI_1749CBEI_1750
CAULO CC0101CC0101CC1895CC1897CC2239
CACE272562 CAC1730CAC1730CAC3163CAC3162
BWEI315730 BCERKBAB4_3683BCERKBAB4_3683BCERKBAB4_1144BCERKBAB4_0065
BVIE269482 BCEP1808_0513BCEP1808_0513BCEP1808_0511BCEP1808_0510BCEP1808_0514
BTHU412694 BALH_3491BALH_3491BALH_1095BALH_0068
BTHU281309 BT9727_3601BT9727_3601BT9727_0064BT9727_0065
BTHA271848 BTH_I2907BTH_I2907BTH_I2909BTH_I2910BTH_I2906
BSUB BSU15790BSU15790BSU22680BSU00750
BSP36773 BCEP18194_A3623BCEP18194_A3623BCEP18194_A3621BCEP18194_A3620BCEP18194_A3624
BPUM315750 BPUM_1478BPUM_1755BPUM_1999BPUM_0059
BPSE320373 BURPS668_3554BURPS668_3554BURPS668_3556BURPS668_3557BURPS668_3552
BPSE320372 BURPS1710B_A3856BURPS1710B_A3856BURPS1710B_A3858BURPS1710B_A3859BURPS1710B_A3854
BPSE272560 BPSL3048BPSL3048BPSL3050BPSL3051BPSL3047
BPET94624 BPET0322BPET0322BPET0320BPET0319BPET0323
BPER257313 BP3266BP3266BP3264BP3263BP3267
BPAR257311 BPP4154BPP4154BPP4156BPP4157BPP4153
BMAL320389 BMA10247_A1908BMA10247_A1908BMA10247_A1910BMA10247_A1911BMA10247_A1907
BMAL320388 BMASAVP1_0642BMASAVP1_0642BMASAVP1_0644BMASAVP1_0645BMASAVP1_0641
BMAL243160 BMA_A0535BMA_A0535BMA_A0533BMA_A0532BMA_A0536
BLIC279010 BL02305BL02305BL02775BL00859
BJAP224911 BLR2588BLR5680BLL2091BLL1101
BHAL272558 BH2502BH2502BH1659BH0091
BCLA66692 ABC2313ABC2313ABC1895ABC0111
BCER572264 BCA_3960BCA_3960BCA_1277BCA_0082
BCER405917 BCE_3902BCE_3902BCE_1356BCE_0068
BCER315749 BCER98_2512BCER98_2512BCER98_0064BCER98_0065
BCER288681 BCE33L3619BCE33L3619BCE33L0064BCE33L0065
BCER226900 BC_3858BC_3858BC_1232BC_0077
BCEN331272 BCEN2424_0536BCEN2424_0536BCEN2424_0534BCEN2424_0533BCEN2424_0537
BCEN331271 BCEN_2569BCEN_2569BCEN_2571BCEN_2572BCEN_2568
BBRO257310 BB4624BB4624BB4626BB4627BB4623
BANT592021 BAA_4022BAA_4022BAA_1324BAA_0082
BANT568206 BAMEG_0633BAMEG_0633BAMEG_3342BAMEG_0082
BANT261594 GBAA3998GBAA3998GBAA1248GBAA0069
BANT260799 BAS3711BAS3711BAS0068BAS0069
BAMY326423 RBAM_015620RBAM_015620RBAM_020840RBAM_000860
BAMB398577 BAMMC406_0465BAMMC406_0465BAMMC406_0463BAMMC406_0462BAMMC406_0466
BAMB339670 BAMB_0441BAMB_0441BAMB_0439BAMB_0438BAMB_0442
AVAR240292 AVA_4675AVA_4675AVA_4721AVA_2780
ASP76114 EBA4173EBA4177EBA4199EBA1421
ASP62977 ACIAD0685ACIAD0685ACIAD0297ACIAD2461
ASP62928 AZO3327AZO3327AZO3325AZO3324AZO0900
ASP232721 AJS_0361AJS_0366AJS_0368AJS_0360
ASAL382245 ASA_1129ASA_1407ASA_1133ASA_3351
AMET293826 AMET_2777AMET_2777AMET_1077AMET_2157
AMAR329726 AM1_1399AM1_1399AM1_5143AM1_1430
AHYD196024 AHA_3185AHA_3185AHA_2923AHA_3181AHA_0941
AFER243159 AFE_3086AFE_3086AFE_3088AFE_3089AFE_0368
AEHR187272 MLG_2834MLG_2834MLG_2250MLG_2249MLG_0222
ADEH290397 ADEH_3971ADEH_3971ADEH_4052ADEH_4053ADEH_4031
ACRY349163 ACRY_0827ACRY_0022ACRY_1234ACRY_1233ACRY_2661
ACEL351607 ACEL_1276ACEL_1276ACEL_1071ACEL_0018
ACAU438753 AZC_1810AZC_2208AZC_2207AZC_4024
ABOR393595 ABO_2042ABO_2042ABO_2027ABO_2026ABO_2049
ABAU360910 BAV3233BAV3233BAV3235BAV3154BAV3232
ABAC204669 ACID345_0074ACID345_0074ACID345_4120ACID345_4125
AAVE397945 AAVE_0438AAVE_0442AAVE_0583AAVE_0437
AAEO224324 AQ_968AQ_968AQ_582AQ_549


Organism features enriched in list (features available for 241 out of the 256 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00042182492
Disease:Bubonic_plague 0.004809166
Disease:Dysentery 0.004809166
Disease:Gastroenteritis 0.00146321113
Endospores:No 6.044e-1938211
Endospores:Yes 0.00025503453
GC_Content_Range4:0-40 3.904e-2531213
GC_Content_Range4:40-60 1.809e-10129224
GC_Content_Range4:60-100 0.000019581145
GC_Content_Range7:0-30 2.711e-8347
GC_Content_Range7:30-40 3.178e-1528166
GC_Content_Range7:50-60 1.026e-1277107
GC_Content_Range7:60-70 3.390e-678134
Genome_Size_Range5:0-2 1.208e-355155
Genome_Size_Range5:4-6 5.809e-26134184
Genome_Size_Range5:6-10 0.00023703147
Genome_Size_Range9:0-1 0.0000725227
Genome_Size_Range9:1-2 4.542e-303128
Genome_Size_Range9:2-3 0.004406038120
Genome_Size_Range9:4-5 7.961e-96596
Genome_Size_Range9:5-6 1.461e-146988
Genome_Size_Range9:6-8 0.00101402538
Gram_Stain:Gram_Neg 2.056e-9172333
Gram_Stain:Gram_Pos 3.178e-639150
Habitat:Aquatic 0.00528804891
Habitat:Host-associated 1.760e-952206
Habitat:Multiple 0.005644286178
Habitat:Terrestrial 0.00011642331
Motility:No 2.243e-1523151
Motility:Yes 6.567e-15156267
Optimal_temp.:- 0.0001414127257
Optimal_temp.:37 5.532e-722106
Oxygen_Req:Aerobic 0.008318988185
Oxygen_Req:Anaerobic 7.979e-721102
Oxygen_Req:Facultative 0.002215798201
Pathogenic_in:Human 0.000469170213
Pathogenic_in:Plant 0.00910001115
Shape:Coccus 0.00001421782
Shape:Rod 3.132e-13185347
Shape:Spiral 0.0001068434
Temp._range:Hyperthermophilic 0.0004879223



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 169
Effective number of orgs (counting one per cluster within 468 clusters): 125

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 71
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
MTHE349307 ncbi Methanosaeta thermophila PT0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S20
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GFOR411154 ncbi Gramella forsetii KT08031
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  M004   EG11957   EG11028   EG10682   EG10047   
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276 TP_0945
TLET416591
TKOD69014 TK0254
TDEN243275 TDE_2597
TACI273075
SWOL335541 SWOL_1223
STOK273063 ST1229
SSUI391296 SSU98_1998
SSUI391295 SSU05_1993
SPYO370554 MGAS10750_SPY0219
SPYO370553 MGAS2096_SPY0242
SPYO370552 MGAS10270_SPY0224
SPYO370551 MGAS9429_SPY0226
SPYO319701 M28_SPY0218
SPYO293653 M5005_SPY0224
SPYO286636 M6_SPY0256
SPYO198466 SPYM3_0192
SPYO193567 SPS0197
SPYO186103 SPYM18_0248
SPYO160490 SPY0264
SMAR399550
SHAE279808
SAUR93062 SACOL1235
SAUR93061 SAOUHSC_01189
SAUR426430 NWMN_1132
SAUR418127 SAHV_1212
SAUR367830 SAUSA300_1115
SAUR359787 SAURJH1_1306
SAUR359786 SAURJH9_1281
SAUR282459 SAS1156
SAUR282458 SAR1198
SAUR273036 SAB1086
SAUR196620 MW1105
SAUR158879 SA1065
SAUR158878 SAV1222
SAGA211110 GBS1819
SAGA208435 SAG_1776
SAGA205921 SAK_1758
SACI330779 SACI_1425
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PPEN278197
PMOB403833 PMOB_1212
PMAR93060 P9215_02021
PMAR167546
PMAR167542
PMAR167540 PMM0184
PMAR146891 A9601_02021
PISL384616 PISL_1913
PHOR70601
PGIN242619 PG_1595
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244 OTBS_0329
NSP35761
NSEN222891 NSE_0336
MTHE349307
MSYN262723
MSTA339860 MSP_1070
MSED399549 MSED_1687
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR267377
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_1785
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_2365
MBAR269797 MBAR_A3626
MART243272
MAEO419665
MACE188937
LXYL281090 LXX11250
LREU557436 LREU_1167
LPLA220668 LP_1621
LJOH257314
LINT363253
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344 LVIS_0960
LBIF456481 LEPBI_I0029
LBIF355278 LBF_0031
LACI272621
KRAD266940
IHOS453591
HWAL362976 HQ1783A
HSP64091
HSAL478009
HPYL85963 JHP1203
HPYL357544 HPAG1_1230
HPY HP1282
HMAR272569 PNG7325
HBUT415426
HACI382638 HAC_0018
GFOR411154 GFO_0397
FNOD381764
FJOH376686 FJOH_1758
ERUM302409 ERGA_CDS_08280
ERUM254945 ERWE_CDS_08390
CTRA471473
CTRA471472
CTET212717 CTC_01227
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMAQ397948
CKOR374847
CJEJ354242 CJJ81176_0476
CFEL264202
CCAV227941
CBUR360115 COXBURSA331_A2074
CBOT536232 CLM_2802
CBOT508765 CLL_A1223
CBOT441771 CLC_2357
CBOT441770 CLB_2375
CBOT36826 CBO2502
CABO218497
BTUR314724
BTHE226186 BT_0531
BHER314723
BGAR290434
BBUR224326
BBAC264462 BD2556
BAPH372461 BCC_351
BAPH198804 BUSG518
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
ANAE240017 ANA_0527
ALAI441768 ACL_0253
AFUL224325
ABUT367737 ABU_2004


Organism features enriched in list (features available for 160 out of the 169 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 2.499e-61417
Disease:Pharyngitis 0.000028388
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0002231911
Disease:Wide_range_of_infections 5.147e-71111
Disease:bronchitis_and_pneumonitis 0.000028388
Endospores:No 3.685e-1599211
Endospores:Yes 0.0001511453
GC_Content_Range4:0-40 7.506e-23110213
GC_Content_Range4:40-60 0.000501445224
GC_Content_Range4:60-100 3.585e-175145
GC_Content_Range7:0-30 1.232e-93247
GC_Content_Range7:30-40 5.563e-1178166
GC_Content_Range7:50-60 1.636e-611107
GC_Content_Range7:60-70 1.961e-164134
Genome_Size_Range5:0-2 2.166e-31100155
Genome_Size_Range5:4-6 3.319e-236184
Genome_Size_Range5:6-10 0.0000258247
Genome_Size_Range9:0-1 2.038e-102327
Genome_Size_Range9:1-2 2.730e-1977128
Genome_Size_Range9:3-4 0.00070401077
Genome_Size_Range9:4-5 2.140e-9596
Genome_Size_Range9:5-6 1.362e-12188
Genome_Size_Range9:6-8 0.0003757238
Gram_Stain:Gram_Neg 1.549e-764333
Habitat:Host-associated 1.038e-988206
Habitat:Multiple 2.751e-627178
Motility:No 0.001518355151
Motility:Yes 0.000110954267
Optimal_temp.:- 0.001071655257
Optimal_temp.:30-37 0.00040761218
Optimal_temp.:37 0.001840141106
Oxygen_Req:Aerobic 0.000023631185
Oxygen_Req:Anaerobic 0.002966339102
Pathogenic_in:Human 0.000923074213
Pathogenic_in:Swine 0.001487055
Salinity:Non-halophilic 0.006007139106
Shape:Coccus 4.686e-64082
Shape:Irregular_coccus 0.00002501317
Shape:Rod 3.030e-1652347
Shape:Sphere 2.357e-71619
Shape:Spiral 0.00603381634
Temp._range:Hyperthermophilic 0.00010491523



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652370.5763
PWY-5340 (sulfate activation for sulfonation)3852400.5492
GLYCOCAT-PWY (glycogen degradation I)2461770.5067
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112050.5038
PWY-5918 (heme biosynthesis I)2721880.5015
AST-PWY (arginine degradation II (AST pathway))1201090.4938
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951500.4916
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181590.4749
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861890.4680
PWY-5386 (methylglyoxal degradation I)3051970.4677
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4582510.4643
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491720.4641
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491720.4641
PWY-561 (superpathway of glyoxylate cycle)1621280.4569
PWY-5986 (ammonium transport)3612170.4538
GLUCONSUPER-PWY (D-gluconate degradation)2291610.4527
GLYOXYLATE-BYPASS (glyoxylate cycle)1691310.4517
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491200.4495
PWY-5194 (siroheme biosynthesis)3121970.4489
PWY-4041 (γ-glutamyl cycle)2791830.4485
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3832240.4466
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982290.4446
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222370.4438
PROSYN-PWY (proline biosynthesis I)4752530.4432
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001910.4422
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891840.4268
PWY-6196 (serine racemization)102900.4240
GLUCARDEG-PWY (D-glucarate degradation I)1521180.4219
PANTO-PWY (pantothenate biosynthesis I)4722490.4191
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392020.4107
HISTSYN-PWY (histidine biosynthesis)4992550.4082
PWY-5913 (TCA cycle variation IV)3011860.4068
PWY-5964 (molybdopterin guanine dinucleotide biosynthesis)2901810.4044
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251520.4044
PWY-1269 (CMP-KDO biosynthesis I)3251950.4014
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482040.4008



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11957   EG11028   EG10682   EG10047   
M0040.9999910.9991770.9992880.999068
EG119570.9989110.9991220.998786
EG110280.9997980.998624
EG106820.998647
EG10047



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PAIRWISE BLAST SCORES:

  M004   EG11957   EG11028   EG10682   EG10047   
M0040.0f0----
EG119577.0e-340.0f0---
EG11028--0.0f0--
EG10682---0.0f0-
EG10047----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ALL-CHORISMATE-PWY (superpathway of chorismate) (degree of match pw to cand: 0.035, degree of match cand to pw: 0.400, average score: 0.580)
  Genes in pathway or complex:
             0.4177 0.0358 EG10799 (purN) GART-MONOMER (phosphoribosylglycinamide formyltransferase 1)
             0.5533 0.2044 EG11375 (folE) GTP-CYCLOHYDRO-I-MONOMER (GTP cyclohydrolase I monomer)
             0.2584 0.0755 EG11138 (nudB) H2NEOPTERINP3PYROPHOSPHOHYDRO-MONOMER (dihydroneopterin triphosphate pyrophosphohydrolase)
             0.9905 0.9685 EG11673 (folB) H2NEOPTERINALDOL-MONOMER (FolB)
             0.7593 0.4860 EG11374 (folK) H2PTERIDINEPYROPHOSPHOKIN-MONOMER (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)
             0.7043 0.4107 G6862 (folM) G6862-MONOMER (dihydromonapterin reductase / dihydrofolate reductase)
             0.7675 0.4130 EG10326 (folA) DIHYDROFOLATEREDUCT-MONOMER (dihydrofolate reductase)
             0.2687 0.0640 EG10327 (folC) FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
             0.1169 0.0001 EG10328 (folD) FOLD-MONOMER (FolD)
   *in cand* 0.9994 0.9986 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
             0.9051 0.6158 EG10683 (pabB) PABASYN-COMPI-MONOMER (PabB)
             0.4041 0.0036 EG50011 (folP) H2PTEROATESYNTH-MONOMER (FolP)
             0.2659 0.0005 EG11493 (pabC) ADCLY-MONOMER (pabC)
             0.7600 0.0532 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
             0.8650 0.5565 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.9039 0.8079 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.7112 0.0784 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
             0.7155 0.0920 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
             0.0937 0.0008 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
             0.8127 0.3768 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.9905 0.9813 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
             0.2386 0.1077 EG11040 (tyrB) TYRB-MONOMER (TyrB)
             0.1123 0.0043 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.2987 0.0751 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.3904 0.0853 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.7239 0.4501 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.9987 0.9970 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.9987 0.9968 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
   *in cand* 0.9993 0.9986 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.6348 0.3097 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.6469 0.2887 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.2539 0.0041 EG10075 (aroC) AROC-MONOMER (AroC)
             0.2831 0.0614 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.9512 0.8075 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.9401 0.7811 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.9502 0.8957 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.5174 0.1889 EG10076 (aroD) AROD-MONOMER (AroD)
             0.9746 0.9144 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.4558 0.0983 EG10079 (aroG) AROG-MONOMER (AroG)
             0.3835 0.0846 EG10080 (aroH) AROH-MONOMER (AroH)
             0.3083 0.1003 EG10078 (aroF) AROF-MONOMER (AroF)
             0.7624 0.6288 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.9862 0.9445 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
             0.5677 0.2224 EG10259 (entA) ENTA-MONOMER (EntA)
             0.4247 0.1709 EG10263 (entE) ENTE-MONOMER (EntE)
             0.2120 0.0999 EG10264 (entF) ENTF-PANT (aryl carrier protein / serine activating enzyme)
             0.4300 0.1437 EG10262 (entD) ENTD-MONOMER (phosphopantetheinyl transferase)
             0.3696 0.1115 EG10260 (entB) ENTB-MONOMER (EntB)
             0.3209 0.1053 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
             0.7706 0.5327 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.3183 0.0952 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
             0.4996 0.0841 EG10579 (menD) MEND-MONOMER (MenD)
             0.8802 0.4414 EG12362 (menF) MENF-MONOMER (MenF)
             0.3662 0.0698 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
             0.3425 0.0813 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.7018 0.2642 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
             0.8795 0.7536 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9990 0.9986 EG10047 (apaG) EG10047-MONOMER (hypothetical protein)
   *in cand* 0.9994 0.9988 EG11957 (alsE) EG11957-MONOMER (allulose-6-phosphate 3-epimerase)
   *in cand* 0.9995 0.9991 M004 (rpe) RIBULP3EPIM-MONOMER (ribulose phosphate 3-epimerase)
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

M004 (centered at M004)
EG11957 (centered at EG11957)
EG11028 (centered at EG11028)
EG10682 (centered at EG10682)
EG10047 (centered at EG10047)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  M004   EG11957   EG11028   EG10682   EG10047   
403/623363/623390/623371/623205/623
AAEO224324:0:Tyes287287250-
AAUR290340:2:Tyes1750-17600-
AAVE397945:0:Tyes1-51430
ABAC204669:0:Tyes0040814086-
ABAU360910:0:Tyes818183080
ABOR393595:0:Tyes16161023
ABUT367737:0:Tyes---0-
ACAU438753:0:Tyes0-4024012237
ACEL351607:0:Tyes1254125410490-
ACRY349163:8:Tyes8070121212112651
ADEH290397:0:Tyes00818260
AEHR187272:0:Tyes25972597201520140
AFER243159:0:Tyes26802680268226830
AHYD196024:0:Tyes21892189194021850
ALAI441768:0:Tyes-0---
AMAR234826:0:Tyes-125--0
AMAR329726:9:Tyes00371433-
AMET293826:0:Tyes1659165901047-
ANAE240017:0:Tyes--0--
AORE350688:0:Tyes00---
APHA212042:0:Tyes-0--1055
APLE416269:0:Tyes6996990--
APLE434271:0:Tno7167160--
ASAL382245:5:Tyes0-26842129
ASP1667:3:Tyes1683-16940-
ASP232721:2:Tyes1-680
ASP62928:0:Tyes24722472247024690
ASP62977:0:Tyes36136102021-
ASP76114:2:Tyes1606-160816210
AVAR240292:3:Tyes1899189919450-
BABO262698:1:Tno505505--0
BAMB339670:3:Tno33104
BAMB398577:3:Tno33104
BAMY326423:0:Tyes1472147219940-
BANT260799:0:Tno3688368801-
BANT261594:2:Tno3593359310850-
BANT568206:2:Tyes48848831720-
BANT592021:2:Tno3810381011380-
BAPH198804:0:Tyes0----
BAPH372461:0:Tyes0----
BBAC264462:0:Tyes----0
BBAC360095:0:Tyes00---
BBRO257310:0:Tyes11340
BCAN483179:1:Tno534534--0
BCEN331271:2:Tno11340
BCEN331272:3:Tyes33104
BCER226900:1:Tyes3704370411380-
BCER288681:0:Tno3609360901-
BCER315749:1:Tyes2309230901-
BCER405917:1:Tyes3624362412300-
BCER572264:1:Tno3718371810650-
BCIC186490:0:Tyes0--481-
BCLA66692:0:Tyes2255225518370-
BFRA272559:1:Tyes-989-0-
BFRA295405:0:Tno-1261-0-
BHAL272558:0:Tyes2485248516420-
BHEN283166:0:Tyes00---
BJAP224911:0:Fyes15014615-10010
BLIC279010:0:Tyes1658165822520-
BLON206672:0:Tyes--1010-
BMAL243160:0:Tno33104
BMAL320388:0:Tno11340
BMAL320389:0:Tyes11340
BMEL224914:1:Tno00--508
BMEL359391:1:Tno495495--0
BOVI236:1:Tyes476476--0
BPAR257311:0:Tno11340
BPER257313:0:Tyes33104
BPET94624:0:Tyes33104
BPSE272560:1:Tyes11340
BPSE320372:1:Tno22450
BPSE320373:1:Tno22450
BPUM315750:0:Tyes1456172219660-
BQUI283165:0:Tyes00---
BSP107806:0:Tyes--0--
BSP107806:2:Tyes00---
BSP36773:2:Tyes33104
BSP376:0:Tyes00--3744
BSUB:0:Tyes1636163623520-
BSUI204722:1:Tyes527527--0
BSUI470137:1:Tno539539--0
BTHA271848:1:Tno11340
BTHE226186:0:Tyes---0-
BTHU281309:1:Tno3499349901-
BTHU412694:1:Tno3309330910340-
BTRI382640:1:Tyes00---
BVIE269482:7:Tyes33104
BWEI315730:4:Tyes3624362411610-
BXEN266265:1:Tyes00---
CACE272562:1:Tyes0014401439-
CAULO:0:Tyes00181618182167
CBEI290402:0:Tyes00586587-
CBLO203907:0:Tyes1431430141-
CBLO291272:0:Tno149-0147-
CBOT36826:1:Tno0----
CBOT441770:0:Tyes0----
CBOT441771:0:Tno0----
CBOT441772:1:Tno00---
CBOT498213:1:Tno00---
CBOT508765:1:Tyes0----
CBOT515621:2:Tyes00---
CBOT536232:0:Tno0----
CBUR227377:1:Tyes699-0698-
CBUR360115:1:Tno0----
CBUR434922:2:Tno1-10960-
CCHL340177:0:Tyes0-325122-
CCON360104:2:Tyes00---
CCUR360105:0:Tyes00---
CDES477974:0:Tyes40440410-
CDIF272563:1:Tyes11451145-0-
CDIP257309:0:Tyes-01015--
CEFF196164:0:Fyes0-1186--
CFET360106:0:Tyes491491-0-
CGLU196627:0:Tyes-01425--
CHOM360107:1:Tyes00---
CHUT269798:0:Tyes-0--967
CHYD246194:0:Tyes--10-
CJAP155077:0:Tyes17611761175817570
CJEI306537:0:Tyes224-0--
CJEJ192222:0:Tyes00---
CJEJ195099:0:Tno00---
CJEJ354242:2:Tyes0----
CJEJ360109:0:Tyes00---
CJEJ407148:0:Tno00---
CKLU431943:1:Tyes103-01-
CMET456442:0:Tyes--10-
CMIC31964:2:Tyes1934-19290-
CMIC443906:2:Tyes6-0--
CNOV386415:0:Tyes00-562-
CPEL335992:0:Tyes00611610-
CPER195102:1:Tyes721721-0-
CPER195103:0:Tno706-10-
CPER289380:3:Tyes606606-0-
CPHY357809:0:Tyes0013541353-
CPRO264201:0:Fyes-409-0-
CPSY167879:0:Tyes002960151-
CRUT413404:0:Tyes495-2373580
CSAL290398:0:Tyes14381438143314310
CSP501479:8:Fyes0-9681053-
CSP78:2:Tyes31513151111411190
CTEP194439:0:Tyes--0115-
CTET212717:0:Tyes0----
CVES412965:0:Tyes4474472243200
CVIO243365:0:Tyes77408
DARO159087:0:Tyes66407
DDES207559:0:Tyes00864--
DETH243164:0:Tyes--01-
DGEO319795:1:Tyes-332021004
DHAF138119:0:Tyes00523600-
DNOD246195:0:Tyes0--563-
DOLE96561:0:Tyes67167110-
DPSY177439:2:Tyes00847848-
DRAD243230:3:Tyes-1159153415090
DRED349161:0:Tyes1477147701-
DSHI398580:5:Tyes1222-02-
DSP216389:0:Tyes--01-
DSP255470:0:Tno--01-
DVUL882:1:Tyes00---
ECAN269484:0:Tyes-0--793
ECAR218491:0:Tyes18331833018101596
ECHA205920:0:Tyes00--907
ECOL199310:0:Tno40044926161739830
ECOL316407:0:Tno38354021121538600
ECOL331111:6:Tno36463646134636200
ECOL362663:0:Tno34134254125333930
ECOL364106:1:Tno38134601147337920
ECOL405955:2:Tyes33854122121333670
ECOL409438:6:Tyes36664431129036410
ECOL413997:0:Tno32093944119631830
ECOL439855:4:Tno34914343176134710
ECOL469008:0:Tno035771993263202
ECOL481805:0:Tno036282040253297
ECOL585034:0:Tno34383438123034130
ECOL585035:0:Tno35994373131235790
ECOL585055:0:Tno37073707137336820
ECOL585056:2:Tno38053805152437850
ECOL585057:0:Tno38294474157038090
ECOL585397:0:Tno38804640138038600
ECOL83334:0:Tno42734273181942560
ECOLI:0:Tno33994113123233740
ECOO157:0:Tno42884288223542700
EFAE226185:3:Tyes00---
EFER585054:1:Tyes32694172160932500
ELIT314225:0:Tyes1226122604355
ERUM254945:0:Tyes----0
ERUM302409:0:Tno----0
ESP42895:1:Tyes32273227161832160
FALN326424:0:Tyes-23601728-
FJOH376686:0:Tyes----0
FMAG334413:1:Tyes-0-386-
FNUC190304:0:Tyes00---
FPHI484022:1:Tyes6576570--
FRANT:0:Tno0-934--
FSP106370:0:Tyes-17101431-
FSP1855:0:Tyes-157817880-
FSUC59374:0:Tyes14391439-0-
FTUL351581:0:Tno0-468--
FTUL393011:0:Tno0-401--
FTUL393115:0:Tyes0-913--
FTUL401614:0:Tyes0-551--
FTUL418136:0:Tno0-1179--
FTUL458234:0:Tno0-420--
GBET391165:0:Tyes205320537367330
GFOR411154:0:Tyes----0
GKAU235909:1:Tyes1175117522210-
GMET269799:1:Tyes0024392438-
GOXY290633:5:Tyes0-931-315
GSUL243231:0:Tyes98698610-
GTHE420246:1:Tyes95395320360-
GURA351605:0:Tyes0015331534-
GVIO251221:0:Tyes270027008460-
HACI382638:1:Tyes--0--
HARS204773:0:Tyes33104
HAUR316274:2:Tyes1709-23820-
HCHE349521:0:Tyes101023240
HDUC233412:0:Tyes00---
HHAL349124:0:Tyes0010371036-
HHEP235279:0:Tyes1062-10-
HINF281310:0:Tyes00957--
HINF374930:0:Tyes00768--
HINF71421:0:Tno00802--
HMAR272569:7:Tyes---0-
HMOD498761:0:Tyes22422401-
HMUK485914:1:Tyes--10-
HNEP81032:0:Tyes1552155210861
HPY:0:Tno--0--
HPYL357544:1:Tyes--0--
HPYL85963:0:Tno--0--
HSOM205914:1:Tyes00---
HSOM228400:0:Tno05301292--
HWAL362976:1:Tyes---0-
ILOI283942:0:Tyes5965960593498
JSP290400:1:Tyes0-11001098-
JSP375286:0:Tyes33104
KPNE272620:2:Tyes27832783027713971
LBIF355278:2:Tyes---0-
LBIF456481:2:Tno---0-
LBOR355276:1:Tyes--01-
LBOR355277:1:Tno--10-
LBRE387344:2:Tyes-0---
LCAS321967:1:Tyes00---
LCHO395495:0:Tyes21-19022
LINN272626:1:Tno28428401271-
LINT189518:1:Tyes--01-
LINT267671:1:Tno--10-
LLAC272622:5:Tyes6026020--
LLAC272623:0:Tyes6096091550-
LMES203120:1:Tyes3323320--
LMON169963:0:Tno21321301174-
LMON265669:0:Tyes18718701072-
LPLA220668:0:Tyes-0---
LPNE272624:0:Tno0--171-
LPNE297245:1:Fno0--163-
LPNE297246:1:Fyes0--167-
LPNE400673:0:Tno164--0-
LREU557436:0:Tyes-0---
LSAK314315:0:Tyes00---
LSPH444177:1:Tyes1421142134380-
LWEL386043:0:Tyes18818801048-
LXYL281090:0:Tyes--0--
MABS561007:1:Tyes2789-26280-
MAER449447:0:Tyes3874387404-
MAQU351348:2:Tyes0023-
MAVI243243:0:Tyes3308-31160-
MBAR269797:1:Tyes--0--
MBOV233413:0:Tno1445-16380-
MBOV410289:0:Tno1435-16130-
MBUR259564:0:Tyes--0--
MCAP243233:0:Tyes22142214221622170
MEXT419610:0:Tyes619-430735420
MFLA265072:0:Tyes4430166
MGIL350054:3:Tyes2943-28190-
MHUN323259:0:Tyes--0--
MJAN243232:2:Tyes--8570-
MKAN190192:0:Tyes--10-
MLAB410358:0:Tyes--10-
MLEP272631:0:Tyes341-7980-
MLOT266835:2:Tyes00--719
MMAG342108:0:Tyes0043414822845
MMAR368407:0:Tyes--01-
MMAR394221:0:Tyes242224229119090
MPET420662:1:Tyes6790676675681
MSED399549:0:Tyes--0--
MSME246196:0:Tyes3016-31670-
MSP164756:1:Tno2373-30450-
MSP164757:0:Tno2398-30420-
MSP189918:2:Tyes2403-30850-
MSP266779:3:Tyes00--68
MSP400668:0:Tyes77-110
MSP409:2:Tyes5168-513706233
MSTA339860:0:Tyes--0--
MSUC221988:0:Tyes121512150--
MTBCDC:0:Tno1499-16950-
MTBRV:0:Tno1411-16120-
MTHE187420:0:Tyes--01-
MTHE264732:0:Tyes00424423-
MTUB336982:0:Tno1424-16120-
MTUB419947:0:Tyes1447-16520-
MVAN350058:0:Tyes2639-27640-
MXAN246197:0:Tyes460046004384530
NARO279238:0:Tyes00194419452598
NEUR228410:0:Tyes2173-217501588
NEUT335283:2:Tyes1936193619380698
NFAR247156:2:Tyes--18190-
NGON242231:0:Tyes00100390-
NHAM323097:2:Tyes23162316--0
NMEN122586:0:Tno263263510-
NMEN122587:0:Tyes220220740-
NMEN272831:0:Tno167167540-
NMEN374833:0:Tno213213550-
NMUL323848:3:Tyes2201953
NOCE323261:1:Tyes11261126112811290
NPHA348780:2:Tyes--01-
NSEN222891:0:Tyes-0---
NSP103690:6:Tyes515515590-
NSP387092:0:Tyes0-874338-
NWIN323098:0:Tyes2108---0
OANT439375:5:Tyes20192019--0
OCAR504832:0:Tyes808---0
OIHE221109:0:Tyes101710170190-
OTSU357244:0:Fyes----0
PAER208963:0:Tyes16163540550
PAER208964:0:Tno1616422580
PARC259536:0:Tyes750--0-
PATL342610:0:Tyes66219002798
PCAR338963:0:Tyes00501502-
PCRY335284:1:Tyes551--0-
PDIS435591:0:Tyes-1095-0-
PENT384676:0:Tyes151517200
PFLU205922:0:Tyes553021
PFLU216595:1:Tyes331019
PFLU220664:0:Tyes886027
PGIN242619:0:Tyes-0---
PHAL326442:1:Tyes2556-112602482
PING357804:0:Tyes008683267-
PINT246198:1:Tyes-5-0-
PISL384616:0:Tyes---0-
PLUM243265:0:Fyes002428307526
PLUT319225:0:Tyes1259125910830-
PMAR146891:0:Tyes---0-
PMAR167539:0:Tyes--15580-
PMAR167540:0:Tyes---0-
PMAR167555:0:Tyes--17910-
PMAR59920:0:Tno--0409-
PMAR74546:0:Tyes--15160-
PMAR74547:0:Tyes0011611525-
PMAR93060:0:Tyes---0-
PMEN399739:0:Tyes535351068
PMOB403833:0:Tyes---0-
PMUL272843:1:Tyes103510350--
PNAP365044:8:Tyes8-209
PPRO298386:2:Tyes0-21944117
PPUT160488:0:Tno141416190
PPUT351746:0:Tyes151517190
PPUT76869:0:Tno151517190
PRUM264731:0:Tyes-0-1191-
PSP117:0:Tyes--9590-
PSP296591:2:Tyes11-2012
PSP312153:0:Tyes2-103
PSP56811:2:Tyes00-1069-
PSTU379731:0:Tyes171719200
PSYR205918:0:Tyes303028047
PSYR223283:2:Tyes161618420
PTHE370438:0:Tyes15215210-
RALB246199:0:Tyes--10-
RCAS383372:0:Tyes--10-
RDEN375451:4:Tyes0-19731977-
RETL347834:5:Tyes1737---0
REUT264198:3:Tyes11340
REUT381666:2:Tyes11340
RFER338969:1:Tyes1-307630740
RLEG216596:6:Tyes2047---0
RMET266264:2:Tyes11340
RPAL258594:0:Tyes0---971
RPAL316055:0:Tyes10600--4269
RPAL316056:0:Tyes00--3306
RPAL316057:0:Tyes879---0
RPAL316058:0:Tyes29172917--0
RPOM246200:1:Tyes0-13411344-
RRUB269796:1:Tyes21272127161616200
RSAL288705:0:Tyes14-0557-
RSOL267608:1:Tyes11340
RSP101510:3:Fyes6136-02672-
RSP357808:0:Tyes322-10-
RSPH272943:4:Tyes804-20-
RSPH349101:2:Tno722-20-
RSPH349102:5:Tyes0-15791577-
RXYL266117:0:Tyes0-748729-
SACI330779:0:Tyes--0--
SACI56780:0:Tyes83483410-
SAGA205921:0:Tno-0---
SAGA208435:0:Tno-0---
SAGA211110:0:Tyes-0---
SALA317655:1:Tyes231823183390252
SARE391037:0:Tyes1785-32460-
SAUR158878:1:Tno-0---
SAUR158879:1:Tno-0---
SAUR196620:0:Tno-0---
SAUR273036:0:Tno-0---
SAUR282458:0:Tno-0---
SAUR282459:0:Tno-0---
SAUR359786:1:Tno-0---
SAUR359787:1:Tno-0---
SAUR367830:3:Tno-0---
SAUR418127:0:Tyes-0---
SAUR426430:0:Tno-0---
SAUR93061:0:Fno-0---
SAUR93062:1:Tno-0---
SAVE227882:1:Fyes2586258618650-
SBAL399599:3:Tyes32043204176928820
SBAL402882:1:Tno31023102171127760
SBOY300268:1:Tyes31483148165831180
SCO:2:Fyes005902417-
SDEG203122:0:Tyes101011160
SDEN318161:0:Tyes00223129972692
SDYS300267:1:Tyes34053405119632470
SELO269084:0:Tyes386-0590-
SENT209261:0:Tno37533753146337650
SENT220341:0:Tno38093809109238210
SENT295319:0:Tno31343134102531220
SENT321314:2:Tno33893389166233770
SENT454169:2:Tno35563556176035410
SEPI176279:1:Tyes-0144--
SEPI176280:0:Tno-0151--
SERY405948:0:Tyes--55900-
SFLE198214:0:Tyes32423242120032180
SFLE373384:0:Tno31743174117531500
SFUM335543:0:Tyes17417410-
SGLO343509:3:Tyes19261926100319230
SGOR29390:0:Tyes00444--
SHAL458817:0:Tyes3249-77327730
SHIGELLA:0:Tno38383838120438620
SLAC55218:1:Fyes0023992397-
SLOI323850:0:Tyes002093366669
SMED366394:2:Tyes00---
SMED366394:3:Tyes----0
SMEL266834:1:Tyes00---
SMEL266834:2:Tyes----0
SMUT210007:0:Tyes-0166--
SONE211586:1:Tyes0026873163296
SPEA398579:0:Tno0-14043401633
SPNE1313:0:Tyes-2170--
SPNE170187:0:Tyes2222220--
SPNE171101:0:Tno1831830--
SPNE487213:0:Tno3610176--
SPNE487214:0:Tno-0205--
SPNE488221:0:Tno3650214--
SPRO399741:1:Tyes39323932197239140
SPYO160490:0:Tno-0---
SPYO186103:0:Tno-0---
SPYO193567:0:Tno-0---
SPYO198466:0:Tno-0---
SPYO286636:0:Tno-0---
SPYO293653:0:Tno-0---
SPYO319701:0:Tyes-0---
SPYO370551:0:Tno-0---
SPYO370552:0:Tno-0---
SPYO370553:0:Tno-0---
SPYO370554:0:Tyes-0---
SRUB309807:1:Tyes0-16201623403
SSAP342451:2:Tyes-1710--
SSED425104:0:Tyes356435649010157
SSOL273057:0:Tyes--01-
SSON300269:1:Tyes32923292172832680
SSP1131:0:Tyes85285202038-
SSP1148:0:Tyes1466146602233-
SSP292414:1:Tyes00---
SSP292414:2:Tyes--20-
SSP321327:0:Tyes0019592451-
SSP321332:0:Tyes1475147501835-
SSP387093:0:Tyes-1689069-
SSP644076:4:Fyes00---
SSP644076:5:Fyes--30-
SSP64471:0:Tyes1196119602159-
SSP84588:0:Tyes009531230-
SSP94122:1:Tyes3362336294802680
SSUI391295:0:Tyes-0---
SSUI391296:0:Tyes-0---
STHE264199:0:Tyes-2000--
STHE292459:0:Tyes005253-
STHE299768:0:Tno-1900--
STHE322159:2:Tyes-2020--
STOK273063:0:Tyes--0--
STRO369723:0:Tyes1826-31070-
STYP99287:1:Tyes33693369161733550
SWOL335541:0:Tyes0----
TCRU317025:0:Tyes0-23-
TDEN243275:0:Tyes-0---
TDEN292415:0:Tyes66407
TDEN326298:0:Tyes-10577290-
TELO197221:0:Tyes9199192030-
TERY203124:0:Tyes0010372140-
TFUS269800:0:Tyes00---
TKOD69014:0:Tyes--0--
TMAR243274:0:Tyes--10-
TPAL243276:0:Tyes-0---
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