CANDIDATE ID: 796

CANDIDATE ID: 796

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9950767e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7545 (glcD) (b2979)
   Products of gene:
     - G7545-MONOMER (glycolate oxidase, predicted FAD-linked subunit)
     - CPLX0-7458 (glycolate oxidase)
       Reactions:
        an oxidized electron acceptor + glycolate  =  a reduced electron acceptor + glyoxylate
         In pathways
         GLYCOL-GLYOXDEG-PWY (superpathway of glycol metabolism and degradation)
         GLYOXDEG-PWY (glycolate and glyoxylate degradation II)
         GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)

- G7439 (ygcU) (b2772 (obsolete))
   Products of gene:
     - G7439-MONOMER (predicted FAD-containing dehydrogenase)

- G6913 (ydiJ) (b1687)
   Products of gene:
     - G6913-MONOMER (predicted FAD-linked oxidoreductase)

- G0-8601 (glcF) (b2978 (obsolete))
   Products of gene:
     - MONOMER0-561 (glycolate oxidase, predicted iron-sulfur subunit)
     - CPLX0-7458 (glycolate oxidase)
       Reactions:
        an oxidized electron acceptor + glycolate  =  a reduced electron acceptor + glyoxylate
         In pathways
         GLYCOL-GLYOXDEG-PWY (superpathway of glycol metabolism and degradation)
         GLYOXDEG-PWY (glycolate and glyoxylate degradation II)
         GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 252
Effective number of orgs (counting one per cluster within 468 clusters): 196

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py24
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
UMET351160 ncbi uncultured methanogenic archaeon RC-I4
TTHE300852 ncbi Thermus thermophilus HB83
TTHE262724 ncbi Thermus thermophilus HB273
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB43
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TLET416591 ncbi Thermotoga lettingae TMO3
TERY203124 ncbi Trichodesmium erythraeum IMS1013
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12513
TACI273075 ncbi Thermoplasma acidophilum DSM 17283
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STRO369723 ncbi Salinispora tropica CNB-4403
STOK273063 ncbi Sulfolobus tokodaii 73
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP84588 ncbi Synechococcus sp. WH 81023
SSP644076 Silicibacter sp. TrichCH4B4
SSP387093 ncbi Sulfurovum sp. NBC37-14
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab3
SSP292414 ncbi Ruegeria sp. TM10404
SSP1131 Synechococcus sp. CC96053
SSOL273057 ncbi Sulfolobus solfataricus P23
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLAC55218 Ruegeria lacuscaerulensis3
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SCO ncbi Streptomyces coelicolor A3(2)4
SAVE227882 ncbi Streptomyces avermitilis MA-46803
SARE391037 ncbi Salinispora arenicola CNS-2053
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6393
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP357808 ncbi Roseiflexus sp. RS-14
RSP101510 ncbi Rhodococcus jostii RHA13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6664
PSP117 Pirellula sp.3
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp3
PMAR74547 ncbi Prochlorococcus marinus MIT 93133
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP387092 ncbi Nitratiruptor sp. SB155-24
NSP35761 Nocardioides sp.3
NPHA348780 ncbi Natronomonas pharaonis DSM 21603
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NHAM323097 ncbi Nitrobacter hamburgensis X143
NFAR247156 ncbi Nocardia farcinica IFM 101524
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MXAN246197 ncbi Myxococcus xanthus DK 16223
MTHE349307 ncbi Methanosaeta thermophila PT4
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSP409 Methylobacterium sp.4
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS3
MSP164757 ncbi Mycobacterium sp. JLS3
MSP164756 ncbi Mycobacterium sp. MCS3
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MSED399549 ncbi Metallosphaera sedula DSM 53483
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAZ192952 ncbi Methanosarcina mazei Go14
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK3
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath3
MBUR259564 ncbi Methanococcoides burtonii DSM 62423
MBAR269797 ncbi Methanosarcina barkeri Fusaro4
MAQU351348 ncbi Marinobacter aquaeolei VT83
MAER449447 ncbi Microcystis aeruginosa NIES-8434
MACE188937 ncbi Methanosarcina acetivorans C2A4
LCHO395495 ncbi Leptothrix cholodnii SP-64
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785783
JSP375286 ncbi Janthinobacterium sp. Marseille3
JSP290400 ncbi Jannaschia sp. CCS14
HPYL85963 ncbi Helicobacter pylori J993
HPYL357544 ncbi Helicobacter pylori HPAG13
HPY ncbi Helicobacter pylori 266953
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HHEP235279 ncbi Helicobacter hepaticus ATCC 514494
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans3
HACI382638 ncbi Helicobacter acinonychis Sheeba3
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FSP1855 Frankia sp. EAN1pec3
FSP106370 ncbi Frankia sp. CcI33
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255863
FALN326424 ncbi Frankia alni ACN14a3
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI893
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0733
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-13
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113003
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CTET212717 ncbi Clostridium tetani E883
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10623
CMAQ397948 ncbi Caldivirga maquilingensis IC-1673
CJEJ407148 ncbi Campylobacter jejuni jejuni 811164
CJEJ360109 ncbi Campylobacter jejuni doylei 269.974
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1764
CJEJ195099 ncbi Campylobacter jejuni RM12214
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111684
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3813
CFET360106 ncbi Campylobacter fetus fetus 82-404
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6573
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B3
CBOT498213 ncbi Clostridium botulinum B1 str. Okra3
CBOT441772 ncbi Clostridium botulinum F str. Langeland3
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193973
CBOT36826 Clostridium botulinum A3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AMAR329726 ncbi Acaryochloris marina MBIC110173
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43043
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABUT367737 ncbi Arcobacter butzleri RM40184
ABAU360910 ncbi Bordetella avium 197N3
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC13
AAEO224324 ncbi Aquifex aeolicus VF53


Names of the homologs of the genes in the group in each of these orgs
  G7545   G7439   G6913   G0-8601   
XORY360094 XOOORF_1063XOOORF_2728XOOORF_1063
XORY342109 XOO3619XOO2013XOO3619
XORY291331 XOO3841XOO2144XOO3841
XCAM487884 XCC-B100_3647XCC-B100_2114XCC-B100_3647
XCAM316273 XCAORF_0875XCAORF_2079XCAORF_0875
XCAM314565 XC_3526XC_2363XC_3526
XCAM190485 XCC0708XCC1826XCC0708
XAXO190486 XAC0762XAC1845XAC0762
XAUT78245 XAUT_1870XAUT_1614XAUT_1422XAUT_1868
WSUC273121 WS0267WS0267WS0267WS1750
VEIS391735 VEIS_0625VEIS_1876VEIS_0025VEIS_3311
UMET351160 RCIX1754RCIX1754RCIX2225RCIX1755
TTHE300852 TTHA0505TTHA0797TTHA0503
TTHE262724 TT_C0129TT_C0129TT_C0127
TTEN273068 TTE0224TTE0224TTE0224
TROS309801 TRD_0260TRD_0260TRD_1165TRD_0262
TLET416591 TLET_1694TLET_1694TLET_1694
TERY203124 TERY_4091TERY_4091TERY_2056
TELO197221 TLL1625TLL1625TLL1625TLL1663
TDEN326298 TMDEN_0372TMDEN_0372TMDEN_0372
TACI273075 TA0542TA0542TA0542
SWOL335541 SWOL_1013SWOL_1013SWOL_1013SWOL_1012
STRO369723 STROP_0273STROP_2577STROP_1181
STOK273063 ST2295ST0649ST2294
STHE292459 STH993STH993STH993STH992
SSP84588 SYNW1808OR2937SYNW1808OR2937SYNW0163OR2319
SSP644076 SCH4B_2672SCH4B_4770SCH4B_1327SCH4B_2669
SSP387093 SUN_2130SUN_2130SUN_2130SUN_2092
SSP321332 CYB_2846CYB_2846CYB_2846CYB_2175
SSP321327 CYA_2808CYA_2808CYA_0131
SSP292414 TM1040_2502TM1040_0483TM1040_0483TM1040_2500
SSP1131 SYNCC9605_0660SYNCC9605_0660SYNCC9605_0159
SSOL273057 SSO3163SSO1531SSO3161
SMEL266834 SMC00832SMC00832SMC01455SMC00926
SMED366394 SMED_0394SMED_4540SMED_2031SMED_0396
SLAC55218 SL1157_0874SL1157_1721SL1157_0872
SFUM335543 SFUM_0392SFUM_3899SFUM_0390
SERY405948 SACE_6366SACE_3960SACE_3640SACE_6364
SCO SCO2925SCO0668SCO4367SCO4367
SAVE227882 SAV5151SAV1386SAV3876
SARE391037 SARE_0316SARE_2774SARE_1074
SACI330779 SACI_0206SACI_1188SACI_0205
RXYL266117 RXYL_2833RXYL_2375RXYL_2831
RSPH349102 RSPH17025_0208RSPH17025_0705RSPH17025_0705RSPH17025_0210
RSPH349101 RSPH17029_2680RSPH17029_1811RSPH17029_0795RSPH17029_2678
RSPH272943 RSP_1020RSP_0177RSP_2120RSP_1018
RSP357808 ROSERS_3360ROSERS_3360ROSERS_3858ROSERS_4473
RSP101510 RHA1_RO01589RHA1_RO05090RHA1_RO08314
RSOL267608 RSC2666RSC2664RSC2668
RRUB269796 RRU_A0777RRU_A1299RRU_A2060
RPOM246200 SPO_3478SPO_0634SPO_0634SPO_3480
RPAL316058 RPB_1827RPB_1827RPB_1829
RPAL316057 RPD_4137RPD_1036RPD_4135
RPAL316056 RPC_4736RPC_2091RPC_2718RPC_4734
RPAL316055 RPE_4694RPE_2005RPE_4692
RPAL258594 RPA1130RPA2002RPA3503RPA1132
RMET266264 RMET_2926RMET_5443RMET_5632RMET_2929
RLEG216596 RL0864RL0864RL3261RL0866
RFER338969 RFER_0606RFER_2332RFER_1477RFER_0481
REUT381666 H16_A3094H16_B1197H16_A3091H16_A3097
REUT264198 REUT_A2790REUT_A2787REUT_B4442REUT_A2793
RETL347834 RHE_CH00808RHE_CH00808RHE_CH02804RHE_CH00810
RDEN375451 RD1_0625RD1_3435RD1_0627
RCAS383372 RCAS_4146RCAS_4146RCAS_0560RCAS_4296
PTHE370438 PTH_2230PTH_2230PTH_1881PTH_1882
PSYR223283 PSPTO_3555PSPTO_5293PSPTO_2805PSPTO_3556
PSYR205918 PSYR_3331PSYR_4851PSYR_2533PSYR_3333
PSTU379731 PST_0431PST_0399PST_0433
PSP56811 PSYCPRWF_2348PSYCPRWF_2348PSYCPRWF_2348
PSP312153 PNUC_1781PNUC_0600PNUC_1783
PSP296591 BPRO_0433BPRO_1026BPRO_2755BPRO_0188
PSP117 RB12039RB5701RB12042
PPUT76869 PPUTGB1_2159PPUTGB1_5207PPUTGB1_3999PPUTGB1_2157
PPUT351746 PPUT_2018PPUT_5061PPUT_1419PPUT_2016
PPUT160488 PP_3745PP_5154PP_4493PP_3747
PNAP365044 PNAP_0293PNAP_0069PNAP_0069PNAP_0125
PMEN399739 PMEN_0203PMEN_1558PMEN_0201
PMAR74547 PMT1295PMT1295PMT1937
PFLU220664 PFL_2269PFL_3836PFL_3558PFL_2267
PFLU216595 PFLU3195PFLU5828PFLU3195
PFLU205922 PFL_2219PFL_5386PFL_3281PFL_2217
PENT384676 PSEEN3186PSEEN5247PSEEN3897PSEEN3188
PCRY335284 PCRYO_1885PCRYO_0015PCRYO_1887
PCAR338963 PCAR_2765PCAR_2765PCAR_2765PCAR_2766
PAER208964 PA5355PA3026PA5353
PAER208963 PA14_70690PA14_24940PA14_70670
OIHE221109 OB2831OB2831OB2831OB2832
OCAR504832 OCAR_7283OCAR_7283OCAR_6694OCAR_7281
OANT439375 OANT_3010OANT_2462OANT_1767OANT_3012
NWIN323098 NWI_2581NWI_2581NWI_2579
NSP387092 NIS_0341NIS_0341NIS_0341NIS_0367
NSP35761 NOCA_2155NOCA_4590NOCA_4174
NPHA348780 NP3764ANP3764ANP1452A
NOCE323261 NOC_0495NOC_1924NOC_0841
NMUL323848 NMUL_A0173NMUL_A0193NMUL_A0175
NHAM323097 NHAM_3204NHAM_3204NHAM_3202
NFAR247156 NFA10070NFA13450NFA56070NFA56070
NEUT335283 NEUT_1882NEUT_2388NEUT_2388NEUT_1884
NEUR228410 NE0675NE1009NE1009NE0673
MXAN246197 MXAN_2956MXAN_1676MXAN_3653
MTHE349307 MTHE_1651MTHE_1651MTHE_1651MTHE_1652
MTHE264732 MOTH_2308MOTH_2308MOTH_2308MOTH_0039
MSP409 M446_3033M446_3033M446_5622M446_1761
MSP266779 MESO_0364MESO_0716MESO_0406MESO_0361
MSP189918 MKMS_4035MKMS_3436MKMS_4472
MSP164757 MJLS_3975MJLS_3385MJLS_4766
MSP164756 MMCS_3961MMCS_3374MMCS_4385
MSME246196 MSMEG_0374MSMEG_4334MSMEG_2492
MSED399549 MSED_0553MSED_1118MSED_0554
MPET420662 MPE_A3638MPE_A3774MPE_A3774MPE_A3640
MMAZ192952 MM1291MM1291MM1291MM1290
MMAG342108 AMB2985AMB2985AMB2985
MLOT266835 MLR6916MLR6916MLL1488MLR6920
MGIL350054 MFLV_2230MFLV_2772MFLV_0957
MEXT419610 MEXT_0923MEXT_0923MEXT_4204MEXT_3151
MCAP243233 MCA_1501MCA_0182MCA_1499
MBUR259564 MBUR_1773MBUR_1142MBUR_0953
MBAR269797 MBAR_A0951MBAR_A0951MBAR_A0951MBAR_A0950
MAQU351348 MAQU_3304MAQU_1346MAQU_3302
MAER449447 MAE_52600MAE_52600MAE_52600MAE_44310
MACE188937 MA4631MA4631MA4631MA4630
LCHO395495 LCHO_3260LCHO_0202LCHO_0202LCHO_1172
KRAD266940 KRAD_0766KRAD_0766KRAD_4130KRAD_4130
KPNE272620 GKPORF_B1655GKPORF_B1284GKPORF_B1952
JSP375286 MMA_0335MMA_0435MMA_0337
JSP290400 JANN_0690JANN_1937JANN_1163JANN_0693
HPYL85963 JHP0459JHP0459JHP0459
HPYL357544 HPAG1_0483HPAG1_0483HPAG1_0483
HPY HP0509HP0509HP0509
HMOD498761 HM1_0364HM1_2616HM1_0364HM1_0366
HHEP235279 HH_0869HH_0869HH_1268HH_0974
HCHE349521 HCH_05806HCH_04625HCH_01266HCH_05804
HARS204773 HEAR0284HEAR2733HEAR0286
HACI382638 HAC_0898HAC_0898HAC_0898
GVIO251221 GLR3069GLR3069GLR3436GLR3072
GURA351605 GURA_2199GURA_2199GURA_0648GURA_2198
GTHE420246 GTNG_1383GTNG_3136GTNG_3136GTNG_0372
GSUL243231 GSU_1623GSU_1623GSU_3296GSU_1624
GOXY290633 GOX2071GOX1170GOX0008
GMET269799 GMET_3245GMET_3245GMET_3245GMET_3246
GKAU235909 GK1532GK3215GK2014GK1531
GBET391165 GBCGDNIH1_1230GBCGDNIH1_1230GBCGDNIH1_1230GBCGDNIH1_0886
FSP1855 FRANEAN1_2018FRANEAN1_5599FRANEAN1_5581
FSP106370 FRANCCI3_2414FRANCCI3_0943FRANCCI3_1983
FNUC190304 FN1536FN1536FN1536
FALN326424 FRAAL5480FRAAL1575FRAAL1591
ECOL585397 ECED1_3622ECED1_3221ECED1_1886ECED1_3621
ECOL585057 ECIAI39_3467ECIAI39_2954ECIAI39_1371ECIAI39_3466
ECOL585056 ECUMN_3455ECUMN_3100ECUMN_1976ECUMN_3454
ECOL585055 EC55989_3389EC55989_3046EC55989_1854EC55989_3388
ECOL585035 ECS88_3354ECS88_3037ECS88_1737ECS88_3353
ECOL585034 ECIAI1_3121ECIAI1_2877ECIAI1_1739ECIAI1_3120
ECOL481805 ECOLC_0721ECOLC_0940ECOLC_1944ECOLC_0723
ECOL469008 ECBD_0759ECBD_0957ECBD_1959ECBD_0761
ECOL439855 ECSMS35_3257ECSMS35_2901ECSMS35_1509ECSMS35_3256
ECOL413997 ECB_02848ECB_02617ECB_01656ECB_02847
ECOL409438 ECSE_3257ECSE_3028ECSE_1810ECSE_3256
ECOL405955 APECO1_3448APECO1_3760APECO1_764APECO1_3449
ECOL364106 UTI89_C3394UTI89_C3136UTI89_C1879
ECOL362663 ECP_3057ECP_2746ECP_1634ECP_3056
ECOL331111 ECE24377A_3439ECE24377A_3074ECE24377A_1903ECE24377A_3438
ECOL316407 ECK2974:JW2946:B2979ECK2767:JW5442:B4463ECK1684:JW1677:B1687ECK2973:JW5487:B4468
ECOL199310 C3709C3331C2082
DVUL882 DVU_3027DVU_0390DVU_3028
DSHI398580 DSHI_2896DSHI_1361DSHI_3324DSHI_2894
DRED349161 DRED_0369DRED_0369DRED_1372
DPSY177439 DP1022DP0059DP2334DP1021
DOLE96561 DOLE_0002DOLE_0002DOLE_1222
DHAF138119 DSY3357DSY3216DSY3357DSY3356
DGEO319795 DGEO_0624DGEO_0624DGEO_0623
DDES207559 DDE_3239DDE_0182DDE_3604DDE_3240
DARO159087 DARO_3315DARO_0268DARO_0268DARO_3313
CTET212717 CTC_00976CTC_00976CTC_00976
CSP501479 CSE45_3285CSE45_2177CSE45_1115CSE45_3288
CSAL290398 CSAL_2687CSAL_2316CSAL_2689
CPEL335992 SAR11_0278SAR11_0278SAR11_0276
CMAQ397948 CMAQ_0269CMAQ_0269CMAQ_0269
CJEJ407148 C8J_1156C8J_1156C8J_1156C8J_0928
CJEJ360109 JJD26997_0517JJD26997_0517JJD26997_0517JJD26997_0798
CJEJ354242 CJJ81176_1226CJJ81176_1226CJJ81176_1226CJJ81176_1009
CJEJ195099 CJE_1347CJE_1347CJE_1347CJE_1071
CJEJ192222 CJ1213CCJ1213CCJ1213CCJ0991C
CHYD246194 CHY_0432CHY_0432CHY_0432CHY_0433
CHOM360107 CHAB381_1615CHAB381_1615CHAB381_1615
CFET360106 CFF8240_0693CFF8240_0693CFF8240_0693CFF8240_1568
CBOT536232 CLM_1164CLM_1164CLM_1164
CBOT515621 CLJ_B1054CLJ_B1054CLJ_B1054
CBOT508765 CLL_A0365CLL_A1364CLL_A1364
CBOT498213 CLD_3557CLD_3557CLD_3557
CBOT441772 CLI_1091CLI_1091CLI_1091
CBOT441771 CLC_1062CLC_1062CLC_1062
CBOT441770 CLB_1049CLB_1049CLB_1049
CBOT36826 CBO1009CBO1009CBO1009
CBEI290402 CBEI_0312CBEI_2884CBEI_0312
BWEI315730 BCERKBAB4_1212BCERKBAB4_3226BCERKBAB4_1212BCERKBAB4_1211
BVIE269482 BCEP1808_0695BCEP1808_0696BCEP1808_6619BCEP1808_0693
BTHU412694 BALH_1159BALH_1159BALH_1159BALH_1158
BTHU281309 BT9727_1188BT9727_1188BT9727_1188BT9727_1187
BTHA271848 BTH_I1291BTH_I1292BTH_I1292BTH_I1289
BSUI470137 BSUIS_B0183BSUIS_B0183BSUIS_B0185
BSUI204722 BR_A0180BR_A0180BR_A0180BR_A0182
BSUB BSU28680BSU28680BSU28680BSU28690
BSP376 BRADO6131BRADO2057BRADO5280BRADO6122
BSP36773 BCEP18194_A3820BCEP18194_B2080BCEP18194_C7704BCEP18194_B0031
BPUM315750 BPUM_1792BPUM_1792BPUM_1792BPUM_1793
BPSE320373 BURPS668_3296BURPS668_3295BURPS668_3295BURPS668_3298
BPSE320372 BURPS1710B_A3617BURPS1710B_A3616BURPS1710B_A3616BURPS1710B_A3619
BPSE272560 BPSL2843BPSL2842BPSL2842BPSL2845
BPET94624 BPET2736BPET2737BPET4348BPET2734
BPER257313 BP2905BP2906BP2906BP2903
BPAR257311 BPP2491BPP2490BPP2490BPP2493
BMEL359391 BAB2_0174BAB2_0174BAB2_0176
BMEL224914 BMEII1064BMEII1064BMEII1061
BMAL320389 BMA10247_2601BMA10247_2602BMA10247_2602BMA10247_2599
BMAL320388 BMASAVP1_A0331BMASAVP1_A0332BMASAVP1_A0332BMASAVP1_A0329
BMAL243160 BMA_2414BMA_2415BMA_2415BMA_2412
BLIC279010 BL01799BL01799BL01799BL01798
BJAP224911 BLL7543BLL7543BLR6041BLL7540
BHAL272558 BH2730BH2730BH2730BH2135
BCLA66692 ABC2175ABC3248ABC3248ABC2176
BCER572264 BCA_1348BCA_1348BCA_1348BCA_1347
BCER405917 BCE_1410BCE_1410BCE_1410BCE_1409
BCER315749 BCER98_1018BCER98_1018BCER98_1018BCER98_1017
BCER288681 BCE33L1190BCE33L1190BCE33L1190BCE33L1189
BCER226900 BC_1297BC_1297BC_1297BC_1296
BCEN331272 BCEN2424_0734BCEN2424_0735BCEN2424_6150BCEN2424_0732
BCEN331271 BCEN_0250BCEN_0251BCEN_5785BCEN_0248
BCAN483179 BCAN_B0180BCAN_B0180BCAN_B0182
BBRO257310 BB1938BB1937BB1937BB1940
BANT592021 BAA_1376BAA_1376BAA_1376BAA_1375
BANT568206 BAMEG_3288BAMEG_3288BAMEG_3288BAMEG_3289
BANT261594 GBAA1309GBAA1309GBAA1309GBAA1308
BANT260799 BAS1210BAS1210BAS1210BAS1209
BAMY326423 RBAM_025750RBAM_025750RBAM_025750RBAM_025760
BAMB398577 BAMMC406_0650BAMMC406_0651BAMMC406_5809BAMMC406_5493
BAMB339670 BAMB_0624BAMB_0625BAMB_6039BAMB_4940
BABO262698 BRUAB2_0175BRUAB2_0175BRUAB2_0177
AVAR240292 AVA_2520AVA_2520AVA_4555
ASP76114 EBA4490EBA3803EBA3803EBA4492
ASP62928 AZO0998AZO3432AZO3432AZO1001
ASP232721 AJS_0425AJS_0040AJS_0040AJS_0168
AMET293826 AMET_3747AMET_0821AMET_0821
AMAR329726 AM1_1070AM1_1070AM1_2743
AFUL224325 AF_0868AF_0808AF_0506
ADEH290397 ADEH_2867ADEH_2867ADEH_0810ADEH_2865
ACRY349163 ACRY_2550ACRY_1462ACRY_1462ACRY_2548
ACAU438753 AZC_0083AZC_0253AZC_1415AZC_0080
ABUT367737 ABU_1840ABU_1840ABU_1840ABU_1266
ABAU360910 BAV2151BAV2152BAV2149
AAVE397945 AAVE_0645AAVE_0095AAVE_0095AAVE_0244
AAUR290340 AAUR_0922AAUR_0922AAUR_0922
AAEO224324 AQ_1769AQ_1769AQ_1639


Organism features enriched in list (features available for 237 out of the 252 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0083096217
Arrangment:Filaments 0.0016675910
Disease:Food_poisoning 0.000276699
Endospores:No 9.871e-1052211
Endospores:Yes 6.111e-84053
GC_Content_Range4:0-40 2.658e-1346213
GC_Content_Range4:60-100 1.389e-22109145
GC_Content_Range7:30-40 8.284e-1134166
GC_Content_Range7:40-50 0.000012528117
GC_Content_Range7:50-60 0.006511454107
GC_Content_Range7:60-70 7.024e-20100134
GC_Content_Range7:70-100 0.0055219911
Genome_Size_Range5:0-2 1.168e-2017155
Genome_Size_Range5:4-6 3.781e-11111184
Genome_Size_Range5:6-10 7.254e-114047
Genome_Size_Range9:1-2 4.439e-1417128
Genome_Size_Range9:2-3 0.000326633120
Genome_Size_Range9:4-5 0.00419585096
Genome_Size_Range9:5-6 2.714e-96188
Genome_Size_Range9:6-8 1.369e-83238
Genome_Size_Range9:8-10 0.003761689
Gram_Stain:Gram_Neg 0.0067205148333
Gram_Stain:Gram_Pos 0.008136750150
Habitat:Host-associated 7.012e-1246206
Habitat:Multiple 0.000121492178
Habitat:Terrestrial 4.520e-72631
Motility:No 0.000062542151
Motility:Yes 2.643e-9143267
Optimal_temp.:- 0.0032606119257
Optimal_temp.:25-30 7.191e-71819
Optimal_temp.:30 0.00173521215
Optimal_temp.:37 0.001348830106
Oxygen_Req:Aerobic 0.000064196185
Oxygen_Req:Facultative 0.000018759201
Oxygen_Req:Microaerophilic 0.00473111318
Pathogenic_in:Human 1.953e-758213
Pathogenic_in:No 0.0000471114226
Shape:Coccus 0.00002441782
Shape:Rod 0.0001017162347
Shape:Sphere 0.0035687219
Temp._range:Thermophilic 0.00839362135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 312
Effective number of orgs (counting one per cluster within 468 clusters): 224

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317581
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329531
YPES386656 ncbi Yersinia pestis Pestoides F1
YPES377628 ncbi Yersinia pestis Nepal5161
YPES360102 ncbi Yersinia pestis Antiqua1
YPES349746 ncbi Yersinia pestis Angola1
YPES214092 ncbi Yersinia pestis CO921
YPES187410 ncbi Yersinia pestis KIM 101
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80811
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP61
VVUL196600 ncbi Vibrio vulnificus YJ0161
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106331
VCHO345073 ncbi Vibrio cholerae O3951
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169611
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTUR377629 ncbi Teredinibacter turnerae T79011
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT21
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-31
SSON300269 ncbi Shigella sonnei Ss0461
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SONE211586 ncbi Shewanella oneidensis MR-11
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-41
SHIGELLA ncbi Shigella flexneri 2a str. 2457T1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFLE373384 ncbi Shigella flexneri 5 str. 84011
SFLE198214 ncbi Shigella flexneri 2a str. 3011
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4761
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B671
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91501
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT181
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty21
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-401
SBOY300268 ncbi Shigella boydii Sb2271
SBAL402882 ncbi Shewanella baltica OS1851
SBAL399599 ncbi Shewanella baltica OS1951
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO11
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NMEN122586 ncbi Neisseria meningitidis MC581
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
ILOI283942 ncbi Idiomarina loihiensis L2TR1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R11
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ESP42895 Enterobacter sp.1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFER585054 ncbi Escherichia fergusonii ATCC 354691
EFAE226185 ncbi Enterococcus faecalis V5831
ECOO157 ncbi Escherichia coli O157:H7 EDL9331
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10431
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP11
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4491
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
AHYD196024 Aeromonas hydrophila dhakensis1
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451


Names of the homologs of the genes in the group in each of these orgs
  G7545   G7439   G6913   G0-8601   
ZMOB264203
YPSE349747 YPSIP31758_1739
YPSE273123 YPTB2316
YPES386656 YPDSF_0742
YPES377628 YPN_1861
YPES360102 YPA_1751
YPES349746 YPANGOLA_A2596
YPES214092 YPO2407
YPES187410 Y1932
YENT393305 YE2174
WPIP955
WPIP80849
VVUL216895 VV1_2385
VVUL196600 VV1956
VPAR223926 VP1270
VCHO345073 VC0395_A0818
VCHO VC1198
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTUR377629 TERTU_2954
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408 TPEN_1372
TPAL243276
TMAR243274
TKOD69014
TFUS269800 TFU_2844
TDEN243275 TDE_0138
TCRU317025 TCR_0626
STYP99287 STM1365
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122 SHEWANA3_1737
SSON300269 SSO_1469
SSAP342451
SRUB309807 SRU_1942
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579 SPEA_2548
SONE211586 SO_2643
SMUT210007
SMAR399550
SLOI323850 SHEW_1550
SHIGELLA YDIJ
SHAE279808
SGOR29390
SGLO343509
SFLE373384 SFV_1710
SFLE198214 AAN43293.1
SEPI176280
SEPI176279
SENT454169 SEHA_C1496
SENT321314 SCH_1385
SENT295319 SPA1490
SENT220341 STY1758
SENT209261 T1233
SDEN318161 SDEN_2008
SDEG203122 SDE_2371
SBOY300268 SBO_1443
SBAL402882 SHEW185_2480
SBAL399599 SBAL195_2600
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SALA317655
SAGA211110
SAGA208435
SAGA205921
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PRUM264731
PPEN278197
PMUL272843 PM0787
PMAR93060
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265 PLU2626
PINT246198
PING357804 PING_1450
PHOR70601
PHAL326442 PSHAB0556
PGIN242619
PFUR186497
PDIS435591
PAST100379
PACN267747 PPA1634
PABY272844
OTSU357244
NSEN222891
NMEN374833 NMCC_1431
NMEN272831 NMC1453
NMEN122587 NMA1724
NMEN122586 NMB_1524
NGON242231 NGO0984
MTHE187420
MSYN262723
MSUC221988 MS1221
MSTA339860
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072 MFLA_0723
MCAP340047
MART243272
MAEO419665
LWEL386043
LSAK314315
LREU557436
LPNE400673 LPC_1063
LPNE297246 LPP1604
LPNE297245
LPNE272624 LPG1634
LMON265669
LMON169963
LMES203120
LLAC272623 L174321
LLAC272622 LACR_1896
LJOH257314
LINT363253
LINT267671 LIC_11674
LINT189518 LA2262
LINN272626
LHEL405566
LGAS324831
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481 LEPBI_II0038
LBIF355278 LBF_4037
LACI272621
ILOI283942 IL1315
IHOS453591
HWAL362976 HQ2550A
HSP64091 VNG2422G
HSOM228400 HSM_1528
HSOM205914 HS_1044
HSAL478009 OE4399F
HNEP81032
HMUK485914 HMUK_2547
HMAR272569 RRNAC2334
HINF71421 HI_1163
HINF374930 CGSHIEE_06230
HINF281310 NTHI1331
HDUC233412
HBUT415426 HBUT_1460
GFOR411154 GFO_1630
FTUL458234 FTA_1574
FTUL418136 FTW_1494
FTUL401614 FTN_0649
FTUL393115 FTF1328C
FTUL393011 FTH_1443
FTUL351581 FTL_1489
FSUC59374
FRANT
FPHI484022 FPHI_0171
FNOD381764
FMAG334413
FJOH376686 FJOH_4811
ESP42895 ENT638_1747
ERUM302409
ERUM254945
ELIT314225
EFER585054 EFER_1365
EFAE226185 EF_1108
ECOO157 YDIJ
ECHA205920
ECAR218491 ECA1856
ECAN269484
DSP255470
DSP216389
DNOD246195
DETH243164
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CPSY167879 CPS_2998
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_0305
CPER195103 CPF_0310
CPER195102 CPE0313
CMUR243161
CMIC443906 CMM_2071
CMIC31964 CMS1162
CMET456442
CJEI306537
CJAP155077 CJA_2599
CHUT269798 CHU_3429
CGLU196627 CG2543
CFEL264202
CEFF196164 CE2222
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_0149
CBUR360115 COXBURSA331_A2176
CBUR227377
CBLO291272
CBLO203907
CAULO
CACE272562 CAC2542
CABO218497
BTUR314724
BTRI382640 BT_0636
BTHE226186
BSP107806
BQUI283165 BQ03440
BLON206672
BHER314723
BHEN283166 BH04250
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP62977 ACIAD3300
ASAL382245 ASA_2502
APLE434271 APJL_1454
APLE416269 APL_1422
APHA212042
APER272557 APE0308
AORE350688
ANAE240017 ANA_2778
AMAR234826
AHYD196024 AHA_2649
ACEL351607 ACEL_1470
ABOR393595 ABO_1409
ABAC204669 ACID345_2991


Organism features enriched in list (features available for 290 out of the 312 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00084671517
Disease:Pharyngitis 0.003568588
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00041871111
Disease:Wide_range_of_infections 0.00041871111
Disease:bronchitis_and_pneumonitis 0.003568588
Endospores:No 9.524e-8135211
Endospores:Yes 3.499e-8853
GC_Content_Range4:0-40 1.020e-17155213
GC_Content_Range4:60-100 2.886e-2619145
GC_Content_Range7:0-30 0.00162553347
GC_Content_Range7:30-40 1.623e-13122166
GC_Content_Range7:40-50 0.000090876117
GC_Content_Range7:50-60 0.000820139107
GC_Content_Range7:60-70 1.975e-2417134
Genome_Size_Range5:0-2 1.323e-24130155
Genome_Size_Range5:4-6 1.865e-1351184
Genome_Size_Range5:6-10 1.817e-12247
Genome_Size_Range9:0-1 1.027e-72627
Genome_Size_Range9:1-2 1.016e-16104128
Genome_Size_Range9:2-3 0.003411072120
Genome_Size_Range9:4-5 0.00007603196
Genome_Size_Range9:5-6 1.407e-82088
Genome_Size_Range9:6-8 1.105e-9238
Habitat:Host-associated 2.544e-13144206
Habitat:Multiple 0.000492671178
Habitat:Terrestrial 1.332e-7231
Motility:No 0.000062695151
Motility:Yes 4.199e-1096267
Optimal_temp.:- 0.0094945116257
Optimal_temp.:25-30 0.0000312119
Optimal_temp.:28-30 0.007263177
Optimal_temp.:30 0.0030925215
Optimal_temp.:30-37 0.00005111718
Optimal_temp.:37 0.007554463106
Oxygen_Req:Aerobic 1.461e-666185
Oxygen_Req:Facultative 5.013e-6125201
Pathogenic_in:Animal 0.00591574266
Pathogenic_in:Human 8.261e-11143213
Pathogenic_in:No 1.239e-685226
Pathogenic_in:Rodent 0.007263177
Shape:Coccus 6.519e-76182
Shape:Rod 5.593e-7144347
Shape:Sphere 0.00150971619
Temp._range:Thermophilic 0.0017867935



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYOXDEG-PWY (glycolate and glyoxylate degradation II)1351150.4794
CRNFORCAT-PWY (creatinine degradation I)1911370.4238
GALACTARDEG-PWY (D-galactarate degradation I)1511140.4039
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652080.4008



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7439   G6913   G0-8601   
G75450.9997630.999550.999864
G74390.9995920.99927
G69130.999007
G0-8601



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PAIRWISE BLAST SCORES:

  G7545   G7439   G6913   G0-8601   
G75450.0f0---
G7439-0.0f0--
G6913--0.0f0-
G0-8601---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.500, average score: 0.724)
  Genes in pathway or complex:
             0.3191 0.2008 G6283 (glxK) GLY3KIN-MONOMER (glycerate kinase II)
             0.6193 0.3945 EG11583 (gcl) GLYOCARBOLIG-MONOMER (Gcl)
   *in cand* 0.9995 0.9990 G0-8601 (glcF) MONOMER0-561 (glycolate oxidase, predicted iron-sulfur subunit)
                NIL    NIL G7544 (glcE) G7544-MONOMER (glycolate oxidase, predicted FAD-binding subunit)
   *in cand* 0.9998 0.9996 G7545 (glcD) G7545-MONOMER (glycolate oxidase, predicted FAD-linked subunit)
             0.6911 0.3579 G6278 (glxR) G6278-MONOMER (tartronate semialdehyde reductase 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9990 G6913 (ydiJ) G6913-MONOMER (predicted FAD-linked oxidoreductase)
   *in cand* 0.9997 0.9993 G7439 (ygcU) G7439-MONOMER (predicted FAD-containing dehydrogenase)

- GLYCOL-GLYOXDEG-PWY (superpathway of glycol metabolism and degradation) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.500, average score: 0.677)
  Genes in pathway or complex:
             0.6911 0.3579 G6278 (glxR) G6278-MONOMER (tartronate semialdehyde reductase 2)
             0.6193 0.3945 EG11583 (gcl) GLYOCARBOLIG-MONOMER (Gcl)
             0.3191 0.2008 G6283 (glxK) GLY3KIN-MONOMER (glycerate kinase II)
   *in cand* 0.9995 0.9990 G0-8601 (glcF) MONOMER0-561 (glycolate oxidase, predicted iron-sulfur subunit)
                NIL    NIL G7544 (glcE) G7544-MONOMER (glycolate oxidase, predicted FAD-binding subunit)
   *in cand* 0.9998 0.9996 G7545 (glcD) G7545-MONOMER (glycolate oxidase, predicted FAD-linked subunit)
             0.7680 0.2898 EG20080 (glcB) MALSYNG-MONOMER (malate synthase G)
             0.6656 0.3050 EG10351 (fucO) LACTALDREDUCT-MONOMER (L-1,2-propanediol oxidoreductase monomer)
             0.5353 0.2008 EG10035 (aldA) LACTALDDEHYDROG-MONOMER (AldA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9990 G6913 (ydiJ) G6913-MONOMER (predicted FAD-linked oxidoreductase)
   *in cand* 0.9997 0.9993 G7439 (ygcU) G7439-MONOMER (predicted FAD-containing dehydrogenase)

- CPLX0-7458 (glycolate oxidase) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9990 G0-8601 (glcF) MONOMER0-561 (glycolate oxidase, predicted iron-sulfur subunit)
                NIL    NIL G7544 (glcE) G7544-MONOMER (glycolate oxidase, predicted FAD-binding subunit)
   *in cand* 0.9998 0.9996 G7545 (glcD) G7545-MONOMER (glycolate oxidase, predicted FAD-linked subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9990 G6913 (ydiJ) G6913-MONOMER (predicted FAD-linked oxidoreductase)
   *in cand* 0.9997 0.9993 G7439 (ygcU) G7439-MONOMER (predicted FAD-containing dehydrogenase)

- GLYOXDEG-PWY (glycolate and glyoxylate degradation II) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.500, average score: 0.987)
  Genes in pathway or complex:
             0.7680 0.2898 EG20080 (glcB) MALSYNG-MONOMER (malate synthase G)
   *in cand* 0.9995 0.9990 G0-8601 (glcF) MONOMER0-561 (glycolate oxidase, predicted iron-sulfur subunit)
                NIL    NIL G7544 (glcE) G7544-MONOMER (glycolate oxidase, predicted FAD-binding subunit)
   *in cand* 0.9998 0.9996 G7545 (glcD) G7545-MONOMER (glycolate oxidase, predicted FAD-linked subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9990 G6913 (ydiJ) G6913-MONOMER (predicted FAD-linked oxidoreductase)
   *in cand* 0.9997 0.9993 G7439 (ygcU) G7439-MONOMER (predicted FAD-containing dehydrogenase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G0-8601 G7545 (centered at G7545)
G6913 (centered at G6913)
G7439 (centered at G7439)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7545   G7439   G6913   G0-8601   
300/623291/623319/623225/623
AAEO224324:0:Tyes100-1000
AAUR290340:2:Tyes000-
AAVE397945:0:Tyes54100143
ABAC204669:0:Tyes--0-
ABAU360910:0:Tyes23-0
ABOR393595:0:Tyes-0--
ABUT367737:0:Tyes5725725720
ACAU438753:0:Tyes317513500
ACEL351607:0:Tyes--0-
ACRY349163:8:Tyes1100001098
ADEH290397:0:Tyes2080208002078
AEHR187272:0:Tyes0--2
AFER243159:0:Tyes0--2
AFUL224325:0:Tyes-3582980
AHYD196024:0:Tyes--0-
ALAI441768:0:Tyes00--
AMAR329726:9:Tyes0-01654
AMET293826:0:Tyes285700-
ANAE240017:0:Tyes---0
APER272557:0:Tyes-0--
APLE416269:0:Tyes--0-
APLE434271:0:Tno--0-
ASAL382245:5:Tyes--0-
ASP1667:3:Tyes0-1023-
ASP232721:2:Tyes38300127
ASP62928:0:Tyes0247924793
ASP62977:0:Tyes--0-
ASP76114:2:Tyes41900421
AVAR240292:3:Tyes00-2042
BABO262698:0:Tno00-2
BAMB339670:1:Tno--0-
BAMB339670:2:Tno---0
BAMB339670:3:Tno01--
BAMB398577:1:Tno--0-
BAMB398577:2:Tno---0
BAMB398577:3:Tno01--
BAMY326423:0:Tyes0001
BANT260799:0:Tno1110
BANT261594:2:Tno1110
BANT568206:2:Tyes0001
BANT592021:2:Tno1110
BBRO257310:0:Tyes1003
BCAN483179:0:Tno00-2
BCEN331271:0:Tno--0-
BCEN331271:2:Tno23-0
BCEN331272:1:Tyes--0-
BCEN331272:3:Tyes23-0
BCER226900:1:Tyes1110
BCER288681:0:Tno1110
BCER315749:1:Tyes1110
BCER405917:1:Tyes1110
BCER572264:1:Tno1110
BCLA66692:0:Tyes0108510851
BHAL272558:0:Tyes5955955950
BHEN283166:0:Tyes-0--
BJAP224911:0:Fyes1508150801505
BLIC279010:0:Tyes1110
BMAL243160:1:Tno2330
BMAL320388:1:Tno2330
BMAL320389:1:Tyes2330
BMEL224914:0:Tno33-0
BMEL359391:0:Tno00-2
BOVI236:0:Tyes00--
BPAR257311:0:Tno1003
BPER257313:0:Tyes2330
BPET94624:0:Tyes2316420
BPSE272560:1:Tyes1003
BPSE320372:1:Tno1003
BPSE320373:1:Tno1003
BPUM315750:0:Tyes0001
BQUI283165:0:Tyes-0--
BSP36773:0:Tyes--0-
BSP36773:1:Tyes-2048-0
BSP36773:2:Tyes0---
BSP376:0:Tyes3882030613875
BSUB:0:Tyes0001
BSUI204722:0:Tyes0002
BSUI470137:0:Tno00-2
BTHA271848:1:Tno2330
BTHU281309:1:Tno1110
BTHU412694:1:Tno1110
BTRI382640:1:Tyes-0--
BVIE269482:5:Tyes--0-
BVIE269482:7:Tyes23-0
BWEI315730:4:Tyes1194410
BXEN266265:1:Tyes-9310-
CACE272562:1:Tyes0---
CBEI290402:0:Tyes025310-
CBOT36826:1:Tno000-
CBOT441770:0:Tyes000-
CBOT441771:0:Tno000-
CBOT441772:1:Tno000-
CBOT498213:1:Tno000-
CBOT508765:1:Tyes0958958-
CBOT515621:2:Tyes000-
CBOT536232:0:Tno000-
CBUR360115:1:Tno-0--
CBUR434922:2:Tno-0--
CDIF272563:1:Tyes00--
CEFF196164:0:Fyes--0-
CFET360106:0:Tyes000860
CGLU196627:0:Tyes--0-
CHOM360107:1:Tyes000-
CHUT269798:0:Tyes--0-
CHYD246194:0:Tyes0001
CJAP155077:0:Tyes--0-
CJEJ192222:0:Tyes2202202200
CJEJ195099:0:Tno2702702700
CJEJ354242:2:Tyes2142142140
CJEJ360109:0:Tyes000267
CJEJ407148:0:Tno2292292290
CKLU431943:1:Tyes17050--
CKOR374847:0:Tyes6300--
CMAQ397948:0:Tyes000-
CMIC31964:2:Tyes0---
CMIC443906:2:Tyes0---
CNOV386415:0:Tyes00--
CPEL335992:0:Tyes22-0
CPER195102:1:Tyes0---
CPER195103:0:Tno0---
CPER289380:3:Tyes0---
CPHY357809:0:Tyes820--
CPSY167879:0:Tyes--0-
CRUT413404:0:Tyes0--2
CSAL290398:0:Tyes371-0373
CSP501479:7:Fyes0--3
CSP501479:8:Fyes-10450-
CTET212717:0:Tyes000-
CVES412965:0:Tyes0--2
CVIO243365:0:Tyes-02178-
DARO159087:0:Tyes3075003073
DDES207559:0:Tyes3106034783107
DGEO319795:1:Tyes1-10
DHAF138119:0:Tyes1440144143
DOLE96561:0:Tyes0-01236
DPSY177439:2:Tyes98902335988
DRAD243230:3:Tyes1--0
DRED349161:0:Tyes00-1012
DSHI398580:5:Tyes1554019841552
DVUL882:1:Tyes2623-02624
ECAR218491:0:Tyes--0-
ECOL199310:0:Tno160312320-
ECOL316407:0:Tno1283107701282
ECOL331111:6:Tno1471112201470
ECOL362663:0:Tno1430112001429
ECOL364106:1:Tno151212540-
ECOL405955:2:Tyes1446116201445
ECOL409438:6:Tyes1478124401477
ECOL413997:0:Tno120897501207
ECOL439855:4:Tno1693136101692
ECOL469008:0:Tno020012052
ECOL481805:0:Tno022112292
ECOL585034:0:Tno1359111901358
ECOL585035:0:Tno1559125601558
ECOL585055:0:Tno1506117601505
ECOL585056:2:Tno1481113301480
ECOL585057:0:Tno2091156602090
ECOL585397:0:Tno1700131301699
ECOL83334:0:Tno-12670-
ECOLI:0:Tno1319110601317
ECOO157:0:Tno--0-
EFAE226185:3:Tyes---0
EFER585054:1:Tyes--0-
ESP42895:1:Tyes--0-
FALN326424:0:Tyes3820016-
FJOH376686:0:Tyes--0-
FNUC190304:0:Tyes000-
FPHI484022:1:Tyes--0-
FSP106370:0:Tyes146801043-
FSP1855:0:Tyes035143496-
FTUL351581:0:Tno--0-
FTUL393011:0:Tno--0-
FTUL401614:0:Tyes--0-
FTUL418136:0:Tno--0-
FTUL458234:0:Tno--0-
GBET391165:0:Tyes3443443440
GFOR411154:0:Tyes--0-
GKAU235909:1:Tyes117214950
GMET269799:1:Tyes0001
GOXY290633:5:Tyes204911540-
GSUL243231:0:Tyes0016651
GTHE420246:1:Tyes999272727270
GURA351605:0:Tyes1547154701546
GVIO251221:0:Tyes003753
HACI382638:1:Tyes000-
HARS204773:0:Tyes0-23062
HAUR316274:2:Tyes-02788-
HBUT415426:0:Tyes--0-
HCHE349521:0:Tyes4375322304373
HHAL349124:0:Tyes0--2
HHEP235279:0:Tyes00412112
HINF281310:0:Tyes--0-
HINF374930:0:Tyes--0-
HINF71421:0:Tno--0-
HMAR272569:8:Tyes--0-
HMOD498761:0:Tyes1220810
HMUK485914:1:Tyes--0-
HPY:0:Tno000-
HPYL357544:1:Tyes000-
HPYL85963:0:Tno000-
HSAL478009:4:Tyes--0-
HSOM205914:1:Tyes--0-
HSOM228400:0:Tno--0-
HSP64091:2:Tno--0-
HWAL362976:1:Tyes--0-
ILOI283942:0:Tyes--0-
JSP290400:1:Tyes012554743
JSP375286:0:Tyes0-1002
KPNE272620:2:Tyes-3630657
KRAD266940:2:Fyes0011641164
LBIF355278:1:Tyes-0--
LBIF456481:1:Tno-0--
LCAS321967:1:Tyes232--0
LCHO395495:0:Tyes308800980
LDEL390333:0:Tyes00--
LINT189518:1:Tyes-0--
LINT267671:1:Tno-0--
LLAC272622:5:Tyes---0
LLAC272623:0:Tyes---0
LPLA220668:0:Tyes00--
LPNE272624:0:Tno--0-
LPNE297246:1:Fyes--0-
LPNE400673:0:Tno--0-
LSPH444177:1:Tyes-00-
LXYL281090:0:Tyes00--
MABS561007:1:Tyes00--
MACE188937:0:Tyes1110
MAER449447:0:Tyes8398398390
MAQU351348:2:Tyes19410-1939
MAVI243243:0:Tyes0765--
MBAR269797:1:Tyes1110
MBOV233413:0:Tno260--
MBOV410289:0:Tno260--
MBUR259564:0:Tyes7821740-
MCAP243233:0:Tyes1241-01239
MEXT419610:0:Tyes0032882246
MFLA265072:0:Tyes-0--
MGIL350054:3:Tyes128418370-
MLEP272631:0:Tyes00--
MLOT266835:2:Tyes4292429204295
MMAG342108:0:Tyes000-
MMAZ192952:0:Tyes1110
MPET420662:1:Tyes01361362
MSED399549:0:Tyes0555-1
MSME246196:0:Tyes039322102-
MSP164756:1:Tno5940-1021
MSP164757:0:Tno5990-1384
MSP189918:2:Tyes6090-1049
MSP266779:3:Tyes3352450
MSP400668:0:Tyes-6240-
MSP409:2:Tyes1208120837240
MSUC221988:0:Tyes--0-
MTBCDC:0:Tno01050--
MTBRV:0:Tno01001--
MTHE264732:0:Tyes2217221722170
MTHE349307:0:Tyes0001
MTUB336982:0:Tno0985--
MTUB419947:0:Tyes01038--
MVAN350058:0:Tyes7080--
MXAN246197:0:Tyes122801896-
NARO279238:0:Tyes-4800-
NEUR228410:0:Tyes23393390
NEUT335283:2:Tyes04934932
NFAR247156:2:Tyes034946514651
NGON242231:0:Tyes-0--
NHAM323097:2:Tyes22-0
NMEN122586:0:Tno-0--
NMEN122587:0:Tyes-0--
NMEN272831:0:Tno-0--
NMEN374833:0:Tno-0--
NMUL323848:3:Tyes0-202
NOCE323261:1:Tyes0-1391339
NPHA348780:2:Tyes115911590-
NSP103690:6:Tyes4692--0
NSP35761:1:Tyes024412022-
NSP387092:0:Tyes00026
NWIN323098:0:Tyes22-0
OANT439375:4:Tyes0--2
OANT439375:5:Tyes-7080-
OCAR504832:0:Tyes5875870585
OIHE221109:0:Tyes0001
PACN267747:0:Tyes--0-
PAER178306:0:Tyes2--0
PAER208963:0:Tyes37270-3725
PAER208964:0:Tno23660-2364
PARC259536:0:Tyes0--2
PARS340102:0:Tyes0--2
PATL342610:0:Tyes-10300-
PCAR338963:0:Tyes0001
PCRY335284:1:Tyes18630-1865
PENT384676:0:Tyes019486642
PFLU205922:0:Tyes2320810680
PFLU216595:1:Tyes025490-
PFLU220664:0:Tyes2156112850
PHAL326442:0:Tyes--0-
PING357804:0:Tyes--0-
PISL384616:0:Tyes-0-478
PLUM243265:0:Fyes--0-
PMAR74547:0:Tyes00-664
PMEN399739:0:Tyes21368-0
PMOB403833:0:Tyes00--
PMUL272843:1:Tyes--0-
PNAP365044:8:Tyes2220055
PPRO298386:2:Tyes--076
PPUT160488:0:Tno014027442
PPUT351746:0:Tyes59236590590
PPUT76869:0:Tno2306118450
PSP117:0:Tyes3492-03494
PSP296591:2:Tyes24683225520
PSP312153:0:Tyes1201-01203
PSP56811:2:Tyes00-0
PSTU379731:0:Tyes320-34
PSYR205918:0:Tyes79823330800
PSYR223283:2:Tyes73524520736
PTHE370438:0:Tyes35335301
PTOR263820:0:Tyes00--
RCAS383372:0:Tyes3534353403679
RDEN375451:4:Tyes02634-2
RETL347834:5:Tyes0019772
REUT264198:2:Tyes--0-
REUT264198:3:Tyes30-6
REUT381666:1:Tyes-0--
REUT381666:2:Tyes3-06
RFER338969:1:Tyes12518519960
RLEG216596:6:Tyes0023892
RMET266264:1:Tyes-0189-
RMET266264:2:Tyes0--3
RPAL258594:0:Tyes087123872
RPAL316055:0:Tyes26640-2662
RPAL316056:0:Tyes265606312654
RPAL316057:0:Tyes31260-3124
RPAL316058:0:Tyes00-2
RPOM246200:1:Tyes2787002789
RRUB269796:1:Tyes05191279-
RSOL267608:1:Tyes20-4
RSP101510:2:Fyes--0-
RSP101510:3:Fyes03491--
RSP357808:0:Tyes004941093
RSPH272943:4:Tyes1959109401957
RSPH349101:2:Tno1902102601900
RSPH349102:5:Tyes04934932
RXYL266117:0:Tyes452-0450
SACI330779:0:Tyes1949-0
SACI56780:0:Tyes0-0-
SARE391037:0:Tyes02387746-
SAVE227882:1:Fyes382302511-
SBAL399599:3:Tyes--0-
SBAL402882:1:Tno--0-
SBOY300268:1:Tyes--0-
SCO:2:Fyes2278037463746
SDEG203122:0:Tyes--0-
SDEN318161:0:Tyes--0-
SDYS300267:1:Tyes-12220-
SELO269084:0:Tyes0--1165
SENT209261:0:Tno--0-
SENT220341:0:Tno--0-
SENT295319:0:Tno--0-
SENT321314:2:Tno--0-
SENT454169:2:Tno--0-
SERY405948:0:Tyes263231702630
SFLE198214:0:Tyes--0-
SFLE373384:0:Tno--0-
SFUM335543:0:Tyes23478-0
SHAL458817:0:Tyes-16670-
SHIGELLA:0:Tno--0-
SLAC55218:1:Fyes2826-0
SLOI323850:0:Tyes--0-
SMED366394:2:Tyes-0--
SMED366394:3:Tyes0-16132
SMEL266834:2:Tyes0013872
SONE211586:1:Tyes--0-
SPEA398579:0:Tno--0-
SPRO399741:1:Tyes-2880-
SRUB309807:1:Tyes--0-
SSED425104:0:Tyes-01318-
SSOL273057:0:Tyes15030-1502
SSON300269:1:Tyes--0-
SSP1131:0:Tyes518518-0
SSP1148:0:Tyes1746--0
SSP292414:2:Tyes2053002051
SSP321327:0:Tyes25512551-0
SSP321332:0:Tyes6566566560
SSP387093:0:Tyes3737370
SSP644076:0:Fyes-0--
SSP644076:6:Fyes3--0
SSP644076:7:Fyes--0-
SSP64471:0:Tyes1810--0
SSP84588:0:Tyes16671667-0
SSP94122:1:Tyes--0-
STHE292459:0:Tyes1110
STOK273063:0:Tyes1781-01780
STRO369723:0:Tyes02287904-
STYP99287:1:Tyes--0-
SWOL335541:0:Tyes1110
TACI273075:0:Tyes000-
TCRU317025:0:Tyes--0-
TDEN243275:0:Tyes-0--
TDEN292415:0:Tyes3--0
TDEN326298:0:Tyes000-
TELO197221:0:Tyes00038
TERY203124:0:Tyes18021802-0
TFUS269800:0:Tyes--0-
TLET416591:0:Tyes000-
TPEN368408:1:Tyes-0--
TROS309801:1:Tyes008612
TTEN273068:0:Tyes000-
TTHE262724:1:Tyes2-20
TTHE300852:2:Tyes2-3000
TTUR377629:0:Tyes--0-
TVOL273116:0:Tyes00--
UMET351160:0:Tyes3753750374
VCHO:0:Tyes--0-
VCHO345073:1:Tno--0-
VEIS391735:1:Tyes592183303265
VFIS312309:1:Tyes---0
VFIS312309:2:Tyes--0-
VPAR223926:1:Tyes--0-
VVUL196600:2:Tyes--0-
VVUL216895:1:Tno--0-
WSUC273121:0:Tyes0001350
XAUT78245:1:Tyes4481910446
XAXO190486:0:Tyes010830-
XCAM190485:0:Tyes011180-
XCAM314565:0:Tno117901179-
XCAM316273:0:Tno011780-
XCAM487884:0:Tno155601556-
XFAS160492:2:Tno0-0-
XFAS183190:1:Tyes0-0-
XFAS405440:0:Tno0-0-
XORY291331:0:Tno172601726-
XORY342109:0:Tyes163501635-
XORY360094:0:Tno032280-
YENT393305:1:Tyes--0-
YPES187410:5:Tno--0-
YPES214092:3:Tno--0-
YPES349746:2:Tno--0-
YPES360102:3:Tyes--0-
YPES377628:2:Tno--0-
YPES386656:2:Tno--0-
YPSE273123:2:Tno--0-
YPSE349747:2:Tno--0-



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