CANDIDATE ID: 802

CANDIDATE ID: 802

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9958533e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G6575 (lolE) (b1118)
   Products of gene:
     - YCFW-MONOMER (LolE)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- G6574 (lolD) (b1117)
   Products of gene:
     - YCFV-MONOMER (LolD)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- G6573 (lolC) (b1116)
   Products of gene:
     - YCFU-MONOMER (LolC)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- EG12375 (ycaI) (b0913)
   Products of gene:
     - EG12375-MONOMER (conserved inner membrane protein)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 264
Effective number of orgs (counting one per cluster within 468 clusters): 187

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM43
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py23
WPIP955 Wolbachia pipientis3
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T3
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans3
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3013
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B673
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91503
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22563
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PSP117 Pirellula sp.3
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L483
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSEN222891 ncbi Neorickettsia sennetsu Miyayama3
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X143
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16224
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL13
MSP266779 ncbi Chelativorans sp. BNC13
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAZ192952 ncbi Methanosarcina mazei Go14
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath4
MBAR269797 ncbi Methanosarcina barkeri Fusaro3
MAQU351348 ncbi Marinobacter aquaeolei VT84
MACE188937 ncbi Methanosarcina acetivorans C2A3
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2004
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S854
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255863
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DRAD243230 ncbi Deinococcus radiodurans R13
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA3
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE453
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054763
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse3
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHEN283166 ncbi Bartonella henselae Houston-13
BCIC186490 Candidatus Baumannia cicadellinicola3
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5833
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)3
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  G6575   G6574   G6573   EG12375   
ZMOB264203 ZMO0459ZMO0459ZMO1965
YPSE349747 YPSIP31758_1602YPSIP31758_1601YPSIP31758_1600YPSIP31758_2578
YPSE273123 YPTB2440YPTB2441YPTB2442YPTB1419
YPES386656 YPDSF_1821YPDSF_1822YPDSF_1823YPDSF_2301
YPES377628 YPN_2004YPN_2005YPN_2006YPN_2583
YPES360102 YPA_1897YPA_1898YPA_1899YPA_0685
YPES349746 YPANGOLA_A2861YPANGOLA_A2862YPANGOLA_A2863YPANGOLA_A1958
YPES214092 YPO1628YPO1627YPO1626YPO1394
YPES187410 Y1787Y1786Y1785Y2778
YENT393305 YE1712YE1711YE1710YE1542
XORY360094 XOOORF_2342XOOORF_2343XOOORF_2342XOOORF_2348
XORY342109 XOO2182XOO2181XOO2182XOO2178
XORY291331 XOO2305XOO2304XOO2305XOO2300
XFAS405440 XFASM12_0384XFASM12_0385XFASM12_0384XFASM12_0386
XFAS183190 PD_0356PD_0357PD_0356PD_0358
XFAS160492 XF1076XF1077XF1076XF1078
XCAM487884 XCC-B100_2053XCC-B100_2054XCC-B100_2053XCC-B100_2057
XCAM316273 XCAORF_2392XCAORF_2391XCAORF_2392XCAORF_2387
XCAM314565 XC_1988XC_1989XC_1988XC_1992
XCAM190485 XCC2126XCC2125XCC2126XCC2123
XAXO190486 XAC2081XAC2082XAC2081XAC2084
XAUT78245 XAUT_4462XAUT_4461XAUT_4462
WPIP955 WD_1229WD_1229WD_1160
VVUL216895 VV1_2082VV1_2081VV1_2080VV1_2084
VVUL196600 VV2361VV2362VV2363VV2359
VPAR223926 VP0979VP0978VP0977VP0981
VFIS312309 VFA0464VFA0463VFA0462VFA0423
VEIS391735 VEIS_3181VEIS_3180VEIS_3181VEIS_0403
VCHO345073 VC0395_A1472VC0395_A1473VC0395_A1474VC0395_A1470
VCHO VC1882VC1883VC1884VC1879
TTUR377629 TERTU_1755TERTU_1756TERTU_1755TERTU_2467
TDEN292415 TBD_1761TBD_1760TBD_1761TBD_1759
TCRU317025 TCR_1172TCR_1173TCR_1172TCR_0957
STYP99287 STM1219STM1218STM1217STM0983
SSP94122 SHEWANA3_2285SHEWANA3_2286SHEWANA3_2287SHEWANA3_2585
SSON300269 SSO_1138SSO_1137SSO_1136SSO_0915
SSED425104 SSED_2829SSED_2830SSED_2831SSED_2827
SRUB309807 SRU_0019SRU_1203SRU_1516SRU_0014
SPRO399741 SPRO_2003SPRO_2002SPRO_2001SPRO_1711
SPEA398579 SPEA_1547SPEA_1546SPEA_1545SPEA_1769
SONE211586 SO_2259SO_2258SO_2257SO_2803
SMEL266834 SMC01935SMC01376SMC01935
SMED366394 SMED_0919SMED_0920SMED_0919
SLOI323850 SHEW_1634SHEW_1633SHEW_1632SHEW_1637
SLAC55218 SL1157_0055SL1157_0053SL1157_0055
SHIGELLA YCFWYCFVYCFU
SHAL458817 SHAL_1617SHAL_1616SHAL_1615SHAL_2507
SGLO343509 SG1078SG1077SG1076
SFUM335543 SFUM_3743SFUM_3743SFUM_1716
SFLE373384 SFV_1138SFV_1137SFV_1136SFV_0914
SFLE198214 AAN42740.1AAN42739.1AAN42738.1
SENT454169 SEHA_C1334SEHA_C1333SEHA_C1332SEHA_C1081
SENT321314 SCH_1169SCH_1168SCH_1167
SENT295319 SPA1631SPA1632SPA1633
SENT220341 STY1259STY1258STY1257STY0984
SENT209261 T1701T1702T1703T1951
SDYS300267 SDY_2032SDY_2033SDY_2034SDY_2345
SDEN318161 SDEN_1678SDEN_1677SDEN_1676SDEN_2200
SDEG203122 SDE_1809SDE_1810SDE_1809SDE_1702
SBOY300268 SBO_1943SBO_1944SBO_1945SBO_2201
SBAL402882 SHEW185_2391SHEW185_2392SHEW185_2393SHEW185_1667
SBAL399599 SBAL195_2507SBAL195_2508SBAL195_2509SBAL195_1704
SALA317655 SALA_1175SALA_1176SALA_1175
SACI56780 SYN_00923SYN_00922SYN_00923SYN_02533
RSPH349102 RSPH17025_0402RSPH17025_0403RSPH17025_0402
RSPH349101 RSPH17029_2433RSPH17029_2432RSPH17029_2433
RSPH272943 RSP_0777RSP_0776RSP_0777
RSOL267608 RSC1117RSC1118RSC1117RSC1120
RRUB269796 RRU_A1578RRU_A2748RRU_A1578
RPOM246200 SPO_1123SPO_1124SPO_1123
RPAL316058 RPB_2598RPB_3881RPB_2598
RPAL316057 RPD_2864RPD_1471RPD_2864
RPAL316056 RPC_2428RPC_3826RPC_2428
RPAL316055 RPE_2545RPE_3952RPE_2545
RPAL258594 RPA2927RPA1650RPA2927
RMET266264 RMET_1040RMET_1041RMET_1040RMET_1043
RLEG216596 RL1720RL1721RL1720
RFER338969 RFER_3232RFER_3231RFER_3232RFER_2476
REUT381666 H16_A1173H16_A1174H16_A1173H16_A1176
REUT264198 REUT_A1076REUT_A1077REUT_A1076REUT_A1079
RETL347834 RHE_CH01624RHE_CH01625RHE_CH01624
PSYR223283 PSPTO_2109PSPTO_2110PSPTO_2109PSPTO_3848
PSYR205918 PSYR_1904PSYR_1905PSYR_1904PSYR_1632
PSTU379731 PST_2644PST_2642PST_2644PST_2639
PSP56811 PSYCPRWF_1740PSYCPRWF_1739PSYCPRWF_1740
PSP312153 PNUC_1468PNUC_1467PNUC_1468PNUC_1465
PSP296591 BPRO_1014BPRO_1015BPRO_1014BPRO_3158
PSP117 RB6881RB1517RB6881
PPUT76869 PPUTGB1_1695PPUTGB1_1696PPUTGB1_1697PPUTGB1_1473
PPUT351746 PPUT_3588PPUT_3587PPUT_3588PPUT_3817
PPUT160488 PP_2154PP_2155PP_2154PP_1897
PPRO298386 PBPRA2388PBPRA2389PBPRA2390PBPRA2386
PNAP365044 PNAP_3256PNAP_3255PNAP_3256PNAP_1205
PMUL272843 PM0562PM0561PM0560PM0862
PMEN399739 PMEN_1609PMEN_1608PMEN_1609PMEN_1611
PLUM243265 PLU2812PLU2813PLU2814PLU1629
PING357804 PING_2201PING_2202PING_2203PING_0899
PHAL326442 PSHAA1390PSHAA1389PSHAA1388PSHAA1662
PFLU220664 PFL_1961PFL_1962PFL_1961PFL_1775
PFLU216595 PFLU1572PFLU1573PFLU1574PFLU3775
PFLU205922 PFL_3857PFL_3858PFL_3857PFL_4178
PENT384676 PSEEN3708PSEEN3707PSEEN3708
PCRY335284 PCRYO_0787PCRYO_0788PCRYO_0787
PCAR338963 PCAR_1249PCAR_1250PCAR_1249PCAR_1043
PATL342610 PATL_2360PATL_2361PATL_1727PATL_1779
PARC259536 PSYC_0781PSYC_0782PSYC_0781
PAER208964 PA2988PA2987PA2988PA2984
PAER208963 PA14_25430PA14_25440PA14_25430PA14_25480
OANT439375 OANT_2404OANT_2403OANT_2404
NWIN323098 NWI_1864NWI_1863NWI_1864
NSEN222891 NSE_0137NSE_0137NSE_0317
NOCE323261 NOC_2669NOC_2670NOC_2669NOC_2672
NMUL323848 NMUL_A2509NMUL_A2508NMUL_A2509NMUL_A2506
NMEN374833 NMCC_1116NMCC_1115NMCC_1116NMCC_0660
NMEN272831 NMC1135NMC1134NMC1135NMC0652
NMEN122587 NMA1403NMA1402NMA1403NMA0906
NMEN122586 NMB_1235NMB_1234NMB_1235NMB_0702
NHAM323097 NHAM_2196NHAM_2195NHAM_2196
NGON242231 NGO0769NGO0770NGO0769NGO0276
NEUT335283 NEUT_2492NEUT_2491NEUT_2492NEUT_0728
NEUR228410 NE1057NE1056NE1057NE2408
NARO279238 SARO_1765SARO_1766SARO_1765SARO_2030
MXAN246197 MXAN_4730MXAN_4729MXAN_5419MXAN_2626
MSUC221988 MS1185MS1186MS1187MS0931
MSP409 M446_4409M446_4410M446_4409
MSP400668 MMWYL1_2146MMWYL1_2147MMWYL1_2146
MSP266779 MESO_1041MESO_1042MESO_1041
MPET420662 MPE_A2748MPE_A2747MPE_A2748MPE_A2554
MMAZ192952 MM0091MM2833MM0091MM3056
MMAR394221 MMAR10_1376MMAR10_1377MMAR10_1376
MMAG342108 AMB2572AMB2571AMB2572
MLOT266835 MLL1342MLL1341MLL1342
MFLA265072 MFLA_2095MFLA_2094MFLA_2095MFLA_2093
MEXT419610 MEXT_1065MEXT_1064MEXT_1065
MCAP243233 MCA_2624MCA_2625MCA_2624MCA_2627
MBAR269797 MBAR_A3444MBAR_A3446MBAR_A3444
MAQU351348 MAQU_1747MAQU_1746MAQU_1747MAQU_1744
MACE188937 MA2490MA1668MA2490
LPNE400673 LPC_1754LPC_1753LPC_1754LPC_2668
LPNE297246 LPP2239LPP2238LPP2239LPP0680
LPNE297245 LPL2211LPL2210LPL2211LPL0663
LPNE272624 LPG2285LPG2284LPG2285LPG0626
LINT363253 LI1026LI1025LI1026
LCHO395495 LCHO_2398LCHO_2397LCHO_2398LCHO_2608
KPNE272620 GKPORF_B0031GKPORF_B0030GKPORF_B0029GKPORF_B5382
JSP375286 MMA_1265MMA_1266MMA_1265MMA_1268
ILOI283942 IL1516IL1517IL1518IL1514
HSOM228400 HSM_1417HSM_1418HSM_1419HSM_1500
HSOM205914 HS_0942HS_0943HS_0944HS_1022
HNEP81032 HNE_1765HNE_1766HNE_1765
HINF71421 HI_1548HI_1549HI_1555HI_0061
HINF374930 CGSHIEE_05320CGSHIEE_05325CGSHIEE_05355CGSHIEE_02995
HINF281310 NTHI1586NTHI1585NTHI1578NTHI0073
HHAL349124 HHAL_1252HHAL_1251HHAL_1252HHAL_1314
HDUC233412 HD_0861HD_0860HD_0858HD_1256
HCHE349521 HCH_02350HCH_02351HCH_02350HCH_02699
HARS204773 HEAR2224HEAR2223HEAR2224HEAR2190
GURA351605 GURA_3239GURA_3238GURA_3239GURA_1885
GSUL243231 GSU_2270GSU_2269GSU_2270GSU_1657
GOXY290633 GOX0078GOX0077GOX0078
GMET269799 GMET_2359GMET_2358GMET_2359GMET_1915
GBET391165 GBCGDNIH1_1283GBCGDNIH1_1282GBCGDNIH1_1283
FTUL458234 FTA_0500FTA_0501FTA_0500FTA_2024
FTUL418136 FTW_1669FTW_1668FTW_1669FTW_1913
FTUL401614 FTN_0502FTN_0503FTN_0502FTN_0155
FTUL393115 FTF0404FTF0405FTF0404
FTUL393011 FTH_0472FTH_0473FTH_0472
FTUL351581 FTL_0474FTL_0475FTL_0474FTL_1916
FSUC59374 FSU3206FSU3207FSU3206FSU2828
FRANT LOLCLOLDLOLC
FPHI484022 FPHI_0343FPHI_0342FPHI_0343
FNUC190304 FN0581FN0827FN0581
ESP42895 ENT638_1633ENT638_1632ENT638_1631ENT638_1432
ELIT314225 ELI_07010ELI_07005ELI_07010
EFER585054 EFER_1282EFER_1281EFER_1280EFER_1057
ECOO157 YCFWYCFVYCFUYCAI
ECOL83334 ECS1496ECS1495ECS1494ECS0996
ECOL585397 ECED1_1261ECED1_1260ECED1_1259ECED1_0940
ECOL585057 ECIAI39_2042ECIAI39_2043ECIAI39_2044ECIAI39_2234
ECOL585056 ECUMN_1296ECUMN_1295ECUMN_1294ECUMN_1106
ECOL585055 EC55989_1230EC55989_1229EC55989_1228EC55989_0958
ECOL585035 ECS88_1132ECS88_1131ECS88_1130ECS88_0941
ECOL585034 ECIAI1_1155ECIAI1_1154ECIAI1_1153ECIAI1_0954
ECOL481805 ECOLC_2483ECOLC_2484ECOLC_2485ECOLC_2683
ECOL469008 ECBD_2483ECBD_2484ECBD_2485ECBD_2682
ECOL439855 ECSMS35_2008ECSMS35_2009ECSMS35_2010ECSMS35_2207
ECOL413997 ECB_01114ECB_01113ECB_01112ECB_00917
ECOL409438 ECSE_1183ECSE_1182ECSE_1181ECSE_0972
ECOL405955 APECO1_199APECO1_198APECO1_197APECO1_25
ECOL364106 UTI89_C1246UTI89_C1245UTI89_C1244UTI89_C0984
ECOL362663 ECP_1109ECP_1110ECP_1109ECP_0924
ECOL331111 ECE24377A_1240ECE24377A_1239ECE24377A_1238ECE24377A_1011
ECOL316407 ECK1104:JW1104:B1118ECK1103:JW5162:B1117ECK1102:JW5161:B1116ECK0904:JW5120:B0913
ECOL199310 C1393C1392C1391C1052
ECAR218491 ECA1825ECA1824ECA1823ECA2558
DVUL882 DVU_2375DVU_2374DVU_2375DVU_3257
DRAD243230 DR_0487DR_0487DR_1854
DPSY177439 DP1628DP1627DP1628DP1704
DOLE96561 DOLE_2846DOLE_2845DOLE_2846DOLE_0767
DNOD246195 DNO_1228DNO_1229DNO_1228
DDES207559 DDE_1366DDE_1367DDE_1366DDE_0547
DARO159087 DARO_2836DARO_2835DARO_2836DARO_2832
CVIO243365 CV_2964CV_2963CV_2964CV_0471
CVES412965 COSY_0769COSY_0770COSY_0769
CSP78 CAUL_2811CAUL_2810CAUL_2811
CSP501479 CSE45_0843CSE45_0844CSE45_0843
CSAL290398 CSAL_1582CSAL_1583CSAL_1582CSAL_1585
CRUT413404 RMAG_0844RMAG_0845RMAG_0844
CPSY167879 CPS_3477CPS_3478CPS_3479CPS_2124
CJAP155077 CJA_1777CJA_1776CJA_1775CJA_1778
CBUR434922 COXBU7E912_1046COXBU7E912_1047COXBU7E912_1046COXBU7E912_0920
CBUR360115 COXBURSA331_A0938COXBURSA331_A0939COXBURSA331_A0938COXBURSA331_A1095
CBUR227377 CBU_1001CBU_1000CBU_1001
CBLO291272 BPEN_406BPEN_407BPEN_408
CBLO203907 BFL394BFL395BFL396
CAULO CC1930CC1929CC1930
BVIE269482 BCEP1808_2193BCEP1808_2192BCEP1808_2193BCEP1808_2190
BTRI382640 BT_1200BT_1199BT_1200
BTHA271848 BTH_I1887BTH_I1888BTH_I1887BTH_I1890
BSUI470137 BSUIS_A0862BSUIS_A0863BSUIS_A0862
BSUI204722 BR_0823BR_0824BR_0823
BSP376 BRADO4153BRADO5936BRADO4153
BSP36773 BCEP18194_A5420BCEP18194_A5419BCEP18194_A5420BCEP18194_A5417
BQUI283165 BQ05810BQ05820BQ05810
BPSE320373 BURPS668_2584BURPS668_2583BURPS668_2584BURPS668_2581
BPSE320372 BURPS1710B_A2952BURPS1710B_A2951BURPS1710B_A2952BURPS1710B_A2949
BPSE272560 BPSL2277BPSL2276BPSL2277BPSL2274
BPET94624 BPET2764BPET2763BPET2764BPET2761
BPER257313 BP1107BP1108BP1107
BPAR257311 BPP2050BPP2051BPP2050
BOVI236 GBOORF0848GBOORF0849GBOORF0848
BMEL359391 BAB1_0843BAB1_0844BAB1_0843
BMEL224914 BMEI1139BMEI1138BMEI1139
BMAL320389 BMA10247_1474BMA10247_1473BMA10247_1474BMA10247_1471
BMAL320388 BMASAVP1_A2201BMASAVP1_A2200BMASAVP1_A2201BMASAVP1_A2198
BMAL243160 BMA_1696BMA_1695BMA_1696BMA_1693
BJAP224911 BLL4876BLL4875BLL4876
BHEN283166 BH08780BH08770BH08780
BCIC186490 BCI_0424BCI_0425BCI_0426
BCEN331272 BCEN2424_2114BCEN2424_2113BCEN2424_2114BCEN2424_2111
BCEN331271 BCEN_5963BCEN_5964BCEN_5963BCEN_5966
BCAN483179 BCAN_A0838BCAN_A0839BCAN_A0838
BBRO257310 BB2298BB2299BB2298BB2304
BBAC360095 BARBAKC583_0795BARBAKC583_0796BARBAKC583_0795
BAPH198804 BUSG286BUSG285BUSG284
BAMB398577 BAMMC406_2024BAMMC406_2023BAMMC406_2024BAMMC406_2021
BAMB339670 BAMB_2151BAMB_2150BAMB_2151BAMB_2148
BABO262698 BRUAB1_0837BRUAB1_0838BRUAB1_0837
ASP76114 EBA5819EBA5820EBA5819EBA5822
ASP62977 ACIAD2641ACIAD2640ACIAD2641ACIAD2639
ASP62928 AZO1509AZO1510AZO1509AZO1512
ASP232721 AJS_3421AJS_3420AJS_3421
ASAL382245 ASA_1885ASA_1884ASA_1883ASA_1550
APLE434271 APJL_2087APJL_2088APJL_2089APJL_0768
APLE416269 APL_2036APL_2037APL_2038APL_0766
AHYD196024 AHA_2007AHA_2006AHA_2005AHA_2779
AFER243159 AFE_2556AFE_2555AFE_2556
AEHR187272 MLG_1440MLG_1439MLG_1440MLG_1437
ADEH290397 ADEH_1079ADEH_3410ADEH_1079ADEH_1270
ACAU438753 AZC_1687AZC_1688AZC_1687
ABOR393595 ABO_1049ABO_1050ABO_1049ABO_1052
ABAU360910 BAV1522BAV1523BAV1522BAV1541
ABAC204669 ACID345_3567ACID345_3572ACID345_3567ACID345_0140
AAVE397945 AAVE_3700AAVE_3699AAVE_3700AAVE_1352


Organism features enriched in list (features available for 245 out of the 264 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 5.448e-71892
Disease:Bubonic_plague 0.005313866
Disease:Dysentery 0.005313866
Disease:Gastroenteritis 0.00901421013
Endospores:No 3.026e-1348211
Endospores:Yes 4.389e-11253
GC_Content_Range4:0-40 3.160e-2631213
GC_Content_Range4:40-60 5.045e-8125224
GC_Content_Range4:60-100 9.160e-888145
GC_Content_Range7:0-30 1.478e-7447
GC_Content_Range7:30-40 1.197e-1627166
GC_Content_Range7:50-60 6.300e-1175107
GC_Content_Range7:60-70 7.025e-1087134
Genome_Size_Range5:0-2 8.514e-1822155
Genome_Size_Range5:2-4 0.002239368197
Genome_Size_Range5:4-6 5.533e-18125184
Genome_Size_Range5:6-10 0.00092033047
Genome_Size_Range9:0-1 0.0057592527
Genome_Size_Range9:1-2 3.467e-1517128
Genome_Size_Range9:2-3 0.000044832120
Genome_Size_Range9:4-5 2.114e-76396
Genome_Size_Range9:5-6 3.711e-96288
Genome_Size_Range9:6-8 0.00013442738
Gram_Stain:Gram_Neg 1.643e-48222333
Gram_Stain:Gram_Pos 6.283e-421150
Habitat:Multiple 0.001614290178
Habitat:Specialized 0.00012901053
Motility:No 2.762e-1130151
Motility:Yes 3.874e-8144267
Optimal_temp.:25-30 4.615e-81919
Optimal_temp.:30-37 0.0006187118
Optimal_temp.:35-37 0.00001061313
Optimal_temp.:37 0.009998535106
Oxygen_Req:Aerobic 0.004200791185
Oxygen_Req:Anaerobic 3.861e-721102
Oxygen_Req:Facultative 0.0001032105201
Pathogenic_in:Animal 0.00277883866
Salinity:Non-halophilic 0.009998535106
Shape:Coccobacillus 0.00006321111
Shape:Coccus 1.827e-71482
Shape:Irregular_coccus 0.0062069217
Shape:Rod 2.811e-15191347
Shape:Sphere 0.0025382219
Shape:Spiral 0.0000789434
Temp._range:Mesophilic 0.0003689214473
Temp._range:Psychrophilic 0.000374999
Temp._range:Thermophilic 6.673e-8135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 273
Effective number of orgs (counting one per cluster within 468 clusters): 216

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71201
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
EFAE226185 ncbi Enterococcus faecalis V5831
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K161
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G6575   G6574   G6573   EG12375   
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX2398
TWHI218496
TWHI203267
TVOL273116
TSP28240 TRQ2_0583
TSP1755 TETH514_2092
TPSE340099 TETH39_1406
TPET390874 TPET_0568
TPEN368408
TPAL243276
TMAR243274 TM_0352
TLET416591 TLET_1320
TKOD69014
TFUS269800
TERY203124
TELO197221 TLL1702
TDEN243275 TDE_2041
TACI273075
STRO369723
STOK273063
STHE322159 STER_1520
STHE299768 STR1561
STHE264199 STU1561
SSUI391296 SSU98_0655
SSUI391295 SSU05_0654
SSP84588
SSP64471
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451 SSP1170
SPYO370554 MGAS10750_SPY1254
SPYO370553
SPYO370552 MGAS10270_SPY1218
SPYO370551 MGAS9429_SPY1194
SPYO319701 M28_SPY1141
SPYO293653 M5005_SPY1147
SPYO286636 M6_SPY1122
SPYO198466 SPYM3_1073
SPYO193567 SPS0790
SPYO186103 SPYM18_1416
SPYO160490 SPY1408
SMUT210007 SMU_626
SMAR399550
SHAE279808 SH1327
SGOR29390 SGO_1601
SERY405948
SEPI176280 SE_1274
SEPI176279 SERP1155
SELO269084
SCO
SAVE227882
SAUR93062 SACOL1644
SAUR93061 SAOUHSC_01691
SAUR426430 NWMN_1490
SAUR418127 SAHV_1575
SAUR367830 SAUSA300_1547
SAUR359787 SAURJH1_1680
SAUR359786 SAURJH9_1645
SAUR282459 SAS1525
SAUR282458 SAR1665
SAUR273036
SAUR196620 MW1539
SAUR158879 SA1416
SAUR158878 SAV1588
SARE391037 SARE_0411
SAGA211110 GBS1430
SAGA208435 SAG_1360
SAGA205921 SAK_1393
SACI330779
RSP101510
RSAL288705
RCAS383372 RCAS_0267
RBEL391896
PTOR263820
PTHE370438 PTH_0857
PRUM264731 GFRORF0052
PPEN278197 PEPE_1149
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_1701
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109 OB1979
NSP387092 NIS_0831
NSP35761
NSP103690 ALR1507
NPHA348780
NFAR247156 NFA42490
MVAN350058 MVAN_1004
MTUB419947
MTUB336982
MTHE264732 MOTH_0575
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0076
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1713
MMAR267377
MLEP272631
MLAB410358
MKAN190192 MK1654
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2196
MGIL350054
MGEN243273
MFLO265311
MCAP340047 MCAP_0828
MBUR259564 MBUR_0081
MBOV410289
MBOV233413
MAVI243243
MART243272
MAER449447
MAEO419665
MABS561007
LXYL281090
LWEL386043 LWE1495
LSPH444177 BSPH_0383
LSAK314315
LREU557436 LREU_0645
LPLA220668
LMON265669 LMOF2365_1501
LMON169963 LMO1482
LMES203120
LLAC272623 L0317
LLAC272622
LJOH257314 LJ_1003
LINT267671 LIC_10518
LINT189518 LA3712
LINN272626 LIN1517
LHEL405566 LHV_0889
LGAS324831 LGAS_1174
LDEL390333
LDEL321956
LCAS321967 LSEI_1325
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA0839
KRAD266940 KRAD_1869
IHOS453591
HWAL362976
HSP64091 VNG6354G
HSAL478009 OE6028R
HMUK485914
HMOD498761 HM1_0097
HMAR272569 RRNAC2645
HHEP235279 HH_0318
HBUT415426
GVIO251221 GLR1076
GTHE420246 GTNG_2451
GKAU235909 GKP05
GFOR411154 GFO_1949
FSP1855
FSP106370
FNOD381764 FNOD_0669
FMAG334413 FMG_0788
FJOH376686
FALN326424
EFAE226185 EF_2447
DSP255470
DSP216389
DHAF138119 DSY3147
DGEO319795 DGEO_0813
DETH243164
CTRA471473
CTRA471472
CTEP194439 CT_1474
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3555
CPER289380 CPR_1480
CPER195103 CPF_1849
CPER195102 CPE1597
CNOV386415 NT01CX_0198
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_0884
CJEJ360109 JJD26997_1164
CJEJ354242 CJJ81176_0965
CJEJ195099 CJE_1019
CJEJ192222 CJ0941C
CJEI306537
CHUT269798 CHU_2233
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDES477974 DAUD_2070
CCHL340177 CAG_0979
CCAV227941
CBOT508765 CLL_A2468
CBEI290402 CBEI_1024
CABO218497
BXEN266265
BTUR314724
BTHU412694 BALH_2515
BTHU281309 BT9727_3797
BPUM315750 BPUM_2291
BLON206672
BLIC279010 BL02087
BHER314723
BGAR290434
BFRA295405 BF4478
BFRA272559 BF4273
BCLA66692 ABC1648
BCER572264 BCA_2884
BCER405917 BCE_4406
BCER288681 BCE33L2530
BCER226900 BC_4322
BBUR224326
BAPH372461
BAMY326423 RBAM_023870
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP1667 ARTH_1100
APER272557
ANAE240017
AMAR329726
ALAI441768 ACL_0895
AFUL224325 AF_1018
ACEL351607
AAUR290340


Organism features enriched in list (features available for 258 out of the 273 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00335215292
Arrangment:Clusters 7.071e-71717
Arrangment:Filaments 0.0034057910
Disease:Pharyngitis 0.001383488
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00011291111
Disease:Wide_range_of_infections 0.00011291111
Disease:bronchitis_and_pneumonitis 0.001383488
Disease:gastroenteritis 0.0048277113
Endospores:No 7.771e-17141211
Endospores:Yes 0.00261703353
GC_Content_Range4:0-40 3.555e-11132213
GC_Content_Range4:40-60 0.000309680224
GC_Content_Range4:60-100 0.000152646145
GC_Content_Range7:30-40 3.246e-9105166
GC_Content_Range7:50-60 4.115e-627107
GC_Content_Range7:60-70 3.511e-637134
Genome_Size_Range5:0-2 4.023e-12105155
Genome_Size_Range5:2-4 0.0023500102197
Genome_Size_Range5:4-6 4.303e-1736184
Genome_Size_Range9:0-1 0.00024872127
Genome_Size_Range9:1-2 2.152e-884128
Genome_Size_Range9:2-3 0.000199570120
Genome_Size_Range9:4-5 4.266e-101696
Genome_Size_Range9:5-6 3.526e-62088
Genome_Size_Range9:6-8 0.0038097938
Gram_Stain:Gram_Neg 9.675e-4566333
Gram_Stain:Gram_Pos 3.772e-27122150
Habitat:Multiple 0.001201263178
Habitat:Specialized 0.00113193453
Motility:No 2.320e-13105151
Motility:Yes 3.036e-886267
Optimal_temp.:- 0.000153793257
Optimal_temp.:30-37 7.308e-61718
Oxygen_Req:Aerobic 0.002033667185
Oxygen_Req:Anaerobic 0.000891559102
Salinity:Non-halophilic 0.000866361106
Shape:Coccus 8.374e-96082
Shape:Irregular_coccus 0.00017221517
Shape:Rod 2.002e-14109347
Shape:Sphere 0.00003981719
Temp._range:Hyperthermophilic 0.00001842023
Temp._range:Mesophilic 0.0047239198473
Temp._range:Thermophilic 0.00015752635



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462210.7759
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002410.7403
PWY-1269 (CMP-KDO biosynthesis I)3252470.7106
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912320.7076
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962330.6997
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181950.6989
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902280.6845
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951800.6820
PWY-5918 (heme biosynthesis I)2722190.6794
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482490.6642
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862230.6636
PWY-5913 (TCA cycle variation IV)3012270.6464
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251900.6401
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392400.6284
TYRFUMCAT-PWY (tyrosine degradation I)1841650.6197
PWY-4041 (γ-glutamyl cycle)2792130.6191
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491430.6081
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831620.6023
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911640.5852
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911630.5781
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292280.5764
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551950.5744
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982480.5366
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162540.5360
PWY-5028 (histidine degradation II)1301220.5349
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761480.5297
AST-PWY (arginine degradation II (AST pathway))1201150.5284
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222530.5154
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561330.5015
REDCITCYC (TCA cycle variation II)1741430.5015
PWY-5148 (acyl-CoA hydrolysis)2271700.4982
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96950.4887
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)1121050.4867
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742310.4809
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262120.4803
KDOSYN-PWY (KDO transfer to lipid IVA I)1801420.4710
DAPLYSINESYN-PWY (lysine biosynthesis I)3422170.4705
PWY-5188 (tetrapyrrole biosynthesis I)4392520.4697
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791410.4677
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491760.4674
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491760.4674
PWY-5386 (methylglyoxal degradation I)3052010.4663
P344-PWY (acrylonitrile degradation)2101560.4605
PWY0-501 (lipoate biosynthesis and incorporation I)3852310.4536
P601-PWY (D-camphor degradation)95900.4495
PWY-3162 (tryptophan degradation V (side chain pathway))94890.4462
GLUCONSUPER-PWY (D-gluconate degradation)2291630.4444
PWY-5340 (sulfate activation for sulfonation)3852290.4403
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001940.4347
PWY-46 (putrescine biosynthesis III)1381140.4343
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351120.4320
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381130.4265
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94860.4190
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652180.4176
GLUT-REDOX-PWY (glutathione redox reactions II)2461670.4170
PWY-6087 (4-chlorocatechol degradation)2231560.4167
PWY0-862 (cis-dodecenoyl biosynthesis)3432090.4156
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81770.4122
PWY-5938 ((R)-acetoin biosynthesis I)3762210.4095
LIPASYN-PWY (phospholipases)2121490.4056
GALACTITOLCAT-PWY (galactitol degradation)73710.4046
P122-PWY (heterolactic fermentation)1192-.4002



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6574   G6573   EG12375   
G65750.9999650.9999890.999231
G65740.9999630.999172
G65730.999192
EG12375



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PAIRWISE BLAST SCORES:

  G6575   G6574   G6573   EG12375   
G65750.0f0-2.5e-31-
G6574-0.0f0--
G65731.1e-30-0.0f0-
EG12375---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-62-CPLX (LolCDE ABC lipoprotein transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.750, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9992 G6573 (lolC) YCFU-MONOMER (LolC)
   *in cand* 0.9998 0.9992 G6574 (lolD) YCFV-MONOMER (LolD)
   *in cand* 0.9998 0.9992 G6575 (lolE) YCFW-MONOMER (LolE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9992 EG12375 (ycaI) EG12375-MONOMER (conserved inner membrane protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6573 G6574 G6575 (centered at G6574)
EG12375 (centered at EG12375)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6575   G6574   G6573   EG12375   
312/623334/623313/623311/623
AAEO224324:0:Tyes0-0-
AAVE397945:0:Tyes2305230423050
ABAC204669:0:Tyes3454345934540
ABAU360910:0:Tyes01019
ABOR393595:0:Tyes0103
ABUT367737:0:Tyes0-0-
ACAU438753:0:Tyes010-
ACRY349163:8:Tyes0-0-
ADEH290397:0:Tyes023570194
AEHR187272:0:Tyes3230
AFER243159:0:Tyes101-
AFUL224325:0:Tyes-0--
AHYD196024:0:Tyes210749
ALAI441768:0:Tyes---0
AMAR234826:0:Tyes0-0-
AMET293826:0:Tyes-17-0
AORE350688:0:Tyes-0-1074
APHA212042:0:Tyes0-0-
APLE416269:0:Tyes1311131213130
APLE434271:0:Tno1367136813690
ASAL382245:5:Tyes3293283270
ASP1667:3:Tyes-0--
ASP232721:2:Tyes101-
ASP62928:0:Tyes0103
ASP62977:0:Tyes2120
ASP76114:2:Tyes0103
BABO262698:1:Tno010-
BAMB339670:3:Tno3230
BAMB398577:3:Tno3230
BAMY326423:0:Tyes---0
BANT260799:0:Tno-2500-0
BANT261594:2:Tno-2495-0
BANT568206:2:Tyes-3632-0
BANT592021:2:Tno-2601-0
BAPH198804:0:Tyes210-
BBAC264462:0:Tyes0-268-
BBAC360095:0:Tyes010-
BBRO257310:0:Tyes0106
BCAN483179:1:Tno010-
BCEN331271:0:Tno0103
BCEN331272:3:Tyes3230
BCER226900:1:Tyes---0
BCER288681:0:Tno---0
BCER315749:1:Tyes-988-0
BCER405917:1:Tyes---0
BCER572264:1:Tno---0
BCIC186490:0:Tyes012-
BCLA66692:0:Tyes---0
BFRA272559:1:Tyes0---
BFRA295405:0:Tno0---
BHAL272558:0:Tyes-2357-0
BHEN283166:0:Tyes101-
BJAP224911:0:Fyes101-
BLIC279010:0:Tyes---0
BMAL243160:1:Tno3230
BMAL320388:1:Tno3230
BMAL320389:1:Tyes3230
BMEL224914:1:Tno101-
BMEL359391:1:Tno010-
BOVI236:1:Tyes010-
BPAR257311:0:Tno010-
BPER257313:0:Tyes010-
BPET94624:0:Tyes3230
BPSE272560:1:Tyes3230
BPSE320372:1:Tno3230
BPSE320373:1:Tno3230
BPUM315750:0:Tyes---0
BQUI283165:0:Tyes010-
BSP107806:2:Tyes-10-
BSP36773:2:Tyes3230
BSP376:0:Tyes016990-
BSUB:0:Tyes-819-0
BSUI204722:1:Tyes010-
BSUI470137:1:Tno010-
BTHA271848:1:Tno0103
BTHE226186:0:Tyes0805--
BTHU281309:1:Tno---0
BTHU412694:1:Tno---0
BTRI382640:1:Tyes101-
BVIE269482:7:Tyes3230
BWEI315730:4:Tyes-886-0
CACE272562:1:Tyes-0-713
CAULO:0:Tyes101-
CBEI290402:0:Tyes---0
CBLO203907:0:Tyes012-
CBLO291272:0:Tno012-
CBOT36826:1:Tno-798-0
CBOT441770:0:Tyes-792-0
CBOT441771:0:Tno-776-0
CBOT441772:1:Tno-792-0
CBOT498213:1:Tno-782-0
CBOT508765:1:Tyes---0
CBOT515621:2:Tyes-343-0
CBOT536232:0:Tno-852-0
CBUR227377:1:Tyes101-
CBUR360115:1:Tno010143
CBUR434922:2:Tno1201211200
CCHL340177:0:Tyes-0--
CCON360104:2:Tyes0-0-
CCUR360105:0:Tyes0-0-
CDES477974:0:Tyes---0
CDIF272563:1:Tyes-0-2062
CFET360106:0:Tyes0-0-
CHOM360107:1:Tyes0-0-
CHUT269798:0:Tyes-0--
CHYD246194:0:Tyes-1789-0
CJAP155077:0:Tyes2103
CJEJ192222:0:Tyes--0-
CJEJ195099:0:Tno--0-
CJEJ354242:2:Tyes--0-
CJEJ360109:0:Tyes--0-
CJEJ407148:0:Tno--0-
CKLU431943:1:Tyes-0-1475
CNOV386415:0:Tyes---0
CPEL335992:0:Tyes0-0-
CPER195102:1:Tyes---0
CPER195103:0:Tno---0
CPER289380:3:Tyes---0
CPHY357809:0:Tyes---0
CPSY167879:0:Tyes1301130213030
CRUT413404:0:Tyes010-
CSAL290398:0:Tyes0103
CSP501479:8:Fyes010-
CSP78:2:Tyes101-
CTEP194439:0:Tyes-0--
CTET212717:0:Tyes-926-0
CVES412965:0:Tyes010-
CVIO243365:0:Tyes2549254825490
DARO159087:0:Tyes4340
DDES207559:0:Tyes8368378360
DGEO319795:1:Tyes0---
DHAF138119:0:Tyes---0
DNOD246195:0:Tyes010-
DOLE96561:0:Tyes2097209620970
DPSY177439:2:Tyes10177
DRAD243230:3:Tyes0-01345
DRED349161:0:Tyes-0-2203
DSHI398580:5:Tyes0-0-
DVUL882:1:Tyes101880
ECAN269484:0:Tyes0-0-
ECAR218491:0:Tyes210735
ECHA205920:0:Tyes0-0-
ECOL199310:0:Tno3233223210
ECOL316407:0:Tno2052042030
ECOL331111:6:Tno2232222210
ECOL362663:0:Tno1851861850
ECOL364106:1:Tno2622612600
ECOL405955:2:Tyes1731721710
ECOL409438:6:Tyes2132122110
ECOL413997:0:Tno1991981970
ECOL439855:4:Tno012197
ECOL469008:0:Tno012201
ECOL481805:0:Tno012200
ECOL585034:0:Tno2001991980
ECOL585035:0:Tno1861851840
ECOL585055:0:Tno2742732720
ECOL585056:2:Tno1931921910
ECOL585057:0:Tno012193
ECOL585397:0:Tno3263253240
ECOL83334:0:Tno5095085070
ECOLI:0:Tno2062052040
ECOO157:0:Tno4724714700
EFAE226185:3:Tyes---0
EFER585054:1:Tyes2262252240
ELIT314225:0:Tyes101-
ERUM254945:0:Tyes0-0-
ERUM302409:0:Tno0-0-
ESP42895:1:Tyes2042032020
FMAG334413:1:Tyes---0
FNOD381764:0:Tyes-0--
FNUC190304:0:Tyes02460-
FPHI484022:1:Tyes101-
FRANT:0:Tno010-
FSUC59374:0:Tyes3683693680
FTUL351581:0:Tno0101270
FTUL393011:0:Tno010-
FTUL393115:0:Tyes010-
FTUL401614:0:Tyes3433443430
FTUL418136:0:Tno101202
FTUL458234:0:Tno0101169
GBET391165:0:Tyes101-
GFOR411154:0:Tyes-0--
GKAU235909:0:Tyes---0
GMET269799:1:Tyes4444434440
GOXY290633:5:Tyes101-
GSUL243231:0:Tyes6116106110
GTHE420246:1:Tyes---0
GURA351605:0:Tyes1347134613470
GVIO251221:0:Tyes-0--
HACI382638:1:Tyes0-0-
HARS204773:0:Tyes3332330
HAUR316274:2:Tyes-0-1172
HCHE349521:0:Tyes010317
HDUC233412:0:Tyes210347
HHAL349124:0:Tyes10157
HHEP235279:0:Tyes0---
HINF281310:0:Tyes1375137413680
HINF374930:0:Tyes4094104160
HINF71421:0:Tno1453145414600
HMAR272569:8:Tyes---0
HMOD498761:0:Tyes---0
HNEP81032:0:Tyes010-
HPY:0:Tno0-0-
HPYL357544:1:Tyes0-0-
HPYL85963:0:Tno0-0-
HSAL478009:2:Tyes---0
HSOM205914:1:Tyes01281
HSOM228400:0:Tno01287
HSP64091:1:Tno---0
ILOI283942:0:Tyes2340
JSP290400:1:Tyes0-0-
JSP375286:0:Tyes0103
KPNE272620:2:Tyes2105250
KRAD266940:2:Fyes-0--
LACI272621:0:Tyes---0
LCAS321967:1:Tyes---0
LCHO395495:0:Tyes101217
LGAS324831:0:Tyes---0
LHEL405566:0:Tyes---0
LINN272626:1:Tno---0
LINT189518:1:Tyes-0--
LINT267671:1:Tno-0--
LINT363253:3:Tyes101-
LJOH257314:0:Tyes---0
LLAC272623:0:Tyes---0
LMON169963:0:Tno---0
LMON265669:0:Tyes---0
LPNE272624:0:Tno1657165616570
LPNE297245:1:Fno1544154315440
LPNE297246:1:Fyes1556155515560
LPNE400673:0:Tno101899
LREU557436:0:Tyes---0
LSPH444177:1:Tyes---0
LWEL386043:0:Tyes---0
MACE188937:0:Tyes7990799-
MAQU351348:2:Tyes3230
MBAR269797:1:Tyes020-
MBUR259564:0:Tyes-0--
MCAP243233:0:Tyes0103
MCAP340047:0:Tyes---0
MEXT419610:0:Tyes101-
MFLA265072:0:Tyes2120
MHUN323259:0:Tyes-0--
MKAN190192:0:Tyes-0--
MLOT266835:2:Tyes101-
MMAG342108:0:Tyes101-
MMAR368407:0:Tyes---0
MMAR394221:0:Tyes010-
MMAZ192952:0:Tyes0280503032
MMYC272632:0:Tyes---0
MPET420662:1:Tyes1951941950
MSP266779:3:Tyes010-
MSP400668:0:Tyes010-
MSP409:2:Tyes010-
MSUC221988:0:Tyes2562572580
MTHE264732:0:Tyes---0
MTHE349307:0:Tyes0525--
MVAN350058:0:Tyes-0--
MXAN246197:0:Tyes2025202426920
NARO279238:0:Tyes010276
NEUR228410:0:Tyes1011374
NEUT335283:2:Tyes1727172617270
NFAR247156:2:Tyes-0--
NGON242231:0:Tyes4584594580
NHAM323097:2:Tyes101-
NMEN122586:0:Tno5135125130
NMEN122587:0:Tyes4564554560
NMEN272831:0:Tno4254244250
NMEN374833:0:Tno4514504510
NMUL323848:3:Tyes3230
NOCE323261:1:Tyes0103
NSEN222891:0:Tyes0-0171
NSP103690:6:Tyes-0--
NSP387092:0:Tyes--0-
NWIN323098:0:Tyes101-
OANT439375:5:Tyes101-
OCAR504832:0:Tyes0-0-
OIHE221109:0:Tyes---0
PAER208963:0:Tyes0104
PAER208964:0:Tno4340
PARC259536:0:Tyes010-
PATL342610:0:Tyes633634053
PCAR338963:0:Tyes2042052040
PCRY335284:1:Tyes010-
PDIS435591:0:Tyes4220--
PENT384676:0:Tyes101-
PFLU205922:0:Tyes010323
PFLU216595:1:Tyes0122115
PFLU220664:0:Tyes1851861850
PGIN242619:0:Tyes-6640-
PHAL326442:1:Tyes210273
PING357804:0:Tyes1201120212030
PINT246198:1:Tyes01772--
PLUM243265:0:Fyes1194119511960
PLUT319225:0:Tyes-0--
PMEN399739:0:Tyes1013
PMOB403833:0:Tyes-0-816
PMUL272843:1:Tyes210302
PNAP365044:8:Tyes2062206120620
PPEN278197:0:Tyes---0
PPRO298386:2:Tyes2340
PPUT160488:0:Tno2642652640
PPUT351746:0:Tyes101242
PPUT76869:0:Tno2322332340
PRUM264731:0:Tyes-0--
PSP117:0:Tyes307003070-
PSP296591:2:Tyes0102138
PSP312153:0:Tyes3230
PSP56811:2:Tyes101-
PSTU379731:0:Tyes4340
PSYR205918:0:Tyes2762772760
PSYR223283:2:Tyes0101712
PTHE370438:0:Tyes---0
RAKA293614:0:Fyes0-0-
RALB246199:0:Tyes-0-2585
RBEL336407:0:Tyes0-0-
RCAN293613:0:Fyes0-0-
RCAS383372:0:Tyes-0--
RCON272944:0:Tno0-0-
RDEN375451:4:Tyes0-0-
RETL347834:5:Tyes010-
REUT264198:3:Tyes0103
REUT381666:2:Tyes0103
RFEL315456:2:Tyes0-0-
RFER338969:1:Tyes7567557560
RLEG216596:6:Tyes010-
RMAS416276:1:Tyes0-0-
RMET266264:2:Tyes0103
RPAL258594:0:Tyes128201282-
RPAL316055:0:Tyes013950-
RPAL316056:0:Tyes014060-
RPAL316057:0:Tyes140301403-
RPAL316058:0:Tyes012850-
RPOM246200:1:Tyes010-
RPRO272947:0:Tyes0-0-
RRIC392021:0:Fno0-0-
RRIC452659:0:Tyes0-0-
RRUB269796:1:Tyes011670-
RSOL267608:1:Tyes0103
RSP357808:0:Tyes-0-3996
RSPH272943:4:Tyes101-
RSPH349101:2:Tno101-
RSPH349102:5:Tyes010-
RTYP257363:0:Tno0-0-
RXYL266117:0:Tyes-796-0
SACI56780:0:Tyes7897887890
SAGA205921:0:Tno-0--
SAGA208435:0:Tno-0--
SAGA211110:0:Tyes-0--
SALA317655:1:Tyes010-
SARE391037:0:Tyes-0--
SAUR158878:1:Tno---0
SAUR158879:1:Tno---0
SAUR196620:0:Tno---0
SAUR282458:0:Tno---0
SAUR282459:0:Tno---0
SAUR359786:1:Tno---0
SAUR359787:1:Tno---0
SAUR367830:3:Tno---0
SAUR418127:0:Tyes---0
SAUR426430:0:Tno---0
SAUR93061:0:Fno---0
SAUR93062:1:Tno---0
SBAL399599:3:Tyes8218228230
SBAL402882:1:Tno7407417420
SBOY300268:1:Tyes012240
SDEG203122:0:Tyes1091101090
SDEN318161:0:Tyes210537
SDYS300267:1:Tyes012298
SENT209261:0:Tno012241
SENT220341:0:Tno2422412400
SENT295319:0:Tno012-
SENT321314:2:Tno210-
SENT454169:2:Tno2492482470
SEPI176279:1:Tyes---0
SEPI176280:0:Tno---0
SFLE198214:0:Tyes210-
SFLE373384:0:Tno2132122110
SFUM335543:0:Tyes2010-20100
SGLO343509:3:Tyes210-
SGOR29390:0:Tyes---0
SHAE279808:0:Tyes---0
SHAL458817:0:Tyes210926
SHIGELLA:0:Tno210-
SLAC55218:1:Fyes101-
SLOI323850:0:Tyes2105
SMED366394:3:Tyes010-
SMEL266834:2:Tyes010-
SMUT210007:0:Tyes---0
SONE211586:1:Tyes210541
SPEA398579:0:Tno210226
SPNE1313:0:Tyes-0-161
SPNE170187:0:Tyes-0-121
SPNE171101:0:Tno-0-167
SPNE487213:0:Tno-158-0
SPNE487214:0:Tno-0-167
SPNE488221:0:Tno-0-154
SPRO399741:1:Tyes2982972960
SPYO160490:0:Tno---0
SPYO186103:0:Tno---0
SPYO193567:0:Tno---0
SPYO198466:0:Tno---0
SPYO286636:0:Tno---0
SPYO293653:0:Tno---0
SPYO319701:0:Tyes---0
SPYO370551:0:Tno---0
SPYO370552:0:Tno---0
SPYO370554:0:Tyes---0
SRUB309807:1:Tyes5116014710
SSAP342451:2:Tyes---0
SSED425104:0:Tyes2340
SSON300269:1:Tyes2112102090
SSP292414:2:Tyes0-0-
SSP387093:0:Tyes0-0-
SSP644076:7:Fyes0-0-
SSP94122:1:Tyes012308
SSUI391295:0:Tyes---0
SSUI391296:0:Tyes---0
STHE264199:0:Tyes---0
STHE292459:0:Tyes-137-0
STHE299768:0:Tno---0
STHE322159:2:Tyes---0
STYP99287:1:Tyes2332322310
SWOL335541:0:Tyes-738-0
TCRU317025:0:Tyes2182192180
TDEN243275:0:Tyes--0-
TDEN292415:0:Tyes2120
TDEN326298:0:Tyes0-0-
TELO197221:0:Tyes---0
TLET416591:0:Tyes-0--
TMAR243274:0:Tyes-0--
TPET390874:0:Tno-0--
TPSE340099:0:Tyes---0
TROS309801:1:Tyes-0-1637
TSP1755:0:Tyes---0
TSP28240:0:Tyes-0--
TTEN273068:0:Tyes-1668-0
TTHE262724:1:Tyes-0-968
TTHE300852:2:Tyes-0-980
TTUR377629:0:Tyes010625
UMET351160:0:Tyes---0
VCHO:0:Tyes3450
VCHO345073:1:Tno2340
VEIS391735:1:Tyes2761276027610
VFIS312309:1:Tyes4140390
VPAR223926:1:Tyes2104
VVUL196600:2:Tyes3450
VVUL216895:1:Tno2104
WPIP80849:0:Tyes0-0-
WPIP955:0:Tyes64-640
WSUC273121:0:Tyes0-0-
XAUT78245:1:Tyes101-
XAXO190486:0:Tyes0103
XCAM190485:0:Tyes3230
XCAM314565:0:Tno0104
XCAM316273:0:Tno5450
XCAM487884:0:Tno0104
XFAS160492:2:Tno0102
XFAS183190:1:Tyes0102
XFAS405440:0:Tno0102
XORY291331:0:Tno5450
XORY342109:0:Tyes4340
XORY360094:0:Tno02012
YENT393305:1:Tyes1631621610
YPES187410:5:Tno210990
YPES214092:3:Tno2242232220
YPES349746:2:Tno8778788790
YPES360102:3:Tyes1229123012310
YPES377628:2:Tno012588
YPES386656:2:Tno012477
YPSE273123:2:Tno1020102110220
YPSE349747:2:Tno210968
ZMOB264203:0:Tyes0-01559



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