CANDIDATE ID: 810

CANDIDATE ID: 810

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9980083e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   9.5450000e-20

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7821 (rpiR) (b4089)
   Products of gene:
     - G7821-MONOMER (AlsR transcriptional repressor)
       Regulatees:
        TU0-4504 (alsRBACE)
        TU0-4502 (alsRBACE)
        TU0-4483 (rpiB)
     - MONOMER0-2482 (AlsR-allose)

- G7262 (murR) (b2427)
   Products of gene:
     - G7262-MONOMER (MurR)
     - CPLX0-7746 (MurR-MurNAc-6-P)
     - CPLX0-7745 (MurR DNA binding transcriptional dual regulator)
       Regulatees:
        TU0-13624 (murR)
        TU0-14715 (murQP)
        TU0-14714 (murQP)
     - CPLX0-8054 (MurR-N-acetylmuramate 6-phosphate)

- EG12860 (yebK) (b1853)
   Products of gene:
     - EG12860-MONOMER (predicted DNA-binding transcriptional regulator)

- EG12308 (yfhH) (b2561)
   Products of gene:
     - EG12308-MONOMER (predicted DNA-binding transcriptional regulator)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 223
Effective number of orgs (counting one per cluster within 468 clusters): 145

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP28240 Thermotoga sp.4
TSP1755 Thermoanaerobacter sp.4
TPET390874 ncbi Thermotoga petrophila RKU-14
TMAR243274 ncbi Thermotoga maritima MSB84
TLET416591 ncbi Thermotoga lettingae TMO4
TFUS269800 ncbi Thermobifida fusca YX4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STRO369723 ncbi Salinispora tropica CNB-4404
SSUI391296 ncbi Streptococcus suis 98HAH333
SSUI391295 ncbi Streptococcus suis 05ZYH333
SSP94122 ncbi Shewanella sp. ANA-33
SSON300269 ncbi Shigella sonnei Ss0464
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SPRO399741 ncbi Serratia proteamaculans 5684
SONE211586 ncbi Shewanella oneidensis MR-13
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122283
SEPI176279 ncbi Staphylococcus epidermidis RP62A3
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2173
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SARE391037 ncbi Salinispora arenicola CNS-2054
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RMET266264 ncbi Ralstonia metallidurans CH344
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257454
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMOB403833 ncbi Petrotoga mobilis SJ954
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO13
PING357804 ncbi Psychromonas ingrahamii 373
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PACN267747 ncbi Propionibacterium acnes KPA1712024
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL13
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MAQU351348 ncbi Marinobacter aquaeolei VT83
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LSAK314315 ncbi Lactobacillus sakei sakei 23K4
LPLA220668 ncbi Lactobacillus plantarum WCFS14
LMON265669 ncbi Listeria monocytogenes 4b F23653
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82934
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LJOH257314 ncbi Lactobacillus johnsonii NCC 5334
LHEL405566 ncbi Lactobacillus helveticus DPC 45713
LGAS324831 ncbi Lactobacillus gasseri ATCC 333234
LCHO395495 ncbi Leptothrix cholodnii SP-63
LCAS321967 ncbi Lactobacillus casei ATCC 3344
LBRE387344 ncbi Lactobacillus brevis ATCC 3673
LACI272621 ncbi Lactobacillus acidophilus NCFM3
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP290400 ncbi Jannaschia sp. CCS13
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
FSP106370 ncbi Frankia sp. CcI34
FALN326424 ncbi Frankia alni ACN14a4
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5834
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLON206672 ncbi Bifidobacterium longum NCC27053
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP232721 ncbi Acidovorax sp. JS423
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
ALAI441768 ncbi Acholeplasma laidlawii PG-8A3
AHYD196024 Aeromonas hydrophila dhakensis4
AAVE397945 ncbi Acidovorax citrulli AAC00-13
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G7821   G7262   EG12860   EG12308   
YPSE349747 YPSIP31758_1297YPSIP31758_1142YPSIP31758_2023YPSIP31758_1142
YPSE273123 YPTB2737YPTB2884YPTB2048YPTB2884
YPES386656 YPDSF_2124YPDSF_2269YPDSF_1057YPDSF_2269
YPES377628 YPN_1366YPN_1213YPN_1542YPN_1213
YPES360102 YPA_2206YPA_2365YPA_1448YPA_2365
YPES349746 YPANGOLA_A2771YPANGOLA_A3618YPANGOLA_A2413YPANGOLA_A3618
YPES214092 YPO3017YPO2926YPO2065YPO2926
YPES187410 Y1464Y1304Y2245Y1304
YENT393305 YE1192YE3688YE2384YE1025
VVUL216895 VV2_1140VV2_1140VV1_2825VV2_1140
VVUL196600 VVA1666VVA1666VV1441VVA1666
VPAR223926 VP1236VPA1741VP1236VPA1741
VFIS312309 VF0664VF1113VF0891VF1113
VEIS391735 VEIS_1778VEIS_1778VEIS_2083
VCHO345073 VC0395_A2584VC0395_A2584VC0395_A0718VC0395_A2584
VCHO VC0204VC0204VC1148VC0204
TTEN273068 TTE0211TTE2419TTE2419TTE2419
TSP28240 TRQ2_0607TRQ2_0607TRQ2_0607TRQ2_0607
TSP1755 TETH514_0168TETH514_0168TETH514_0168TETH514_0168
TPET390874 TPET_0593TPET_0593TPET_0593TPET_0593
TMAR243274 TM_0326TM_0326TM_0326TM_0326
TLET416591 TLET_0050TLET_0050TLET_0050TLET_0050
TFUS269800 TFU_2323TFU_2323TFU_2323TFU_2323
STYP99287 STM1127STM2572STM1887STM2572
STRO369723 STROP_2984STROP_2984STROP_2984STROP_2984
SSUI391296 SSU98_1940SSU98_1940SSU98_1940
SSUI391295 SSU05_1933SSU05_1933SSU05_1933
SSP94122 SHEWANA3_2152SHEWANA3_2152SHEWANA3_2152
SSON300269 SSO_2516SSO_2516SSO_1295SSO_2644
SSAP342451 SSP0593SSP0593SSP0593SSP0593
SPRO399741 SPRO_3662SPRO_3662SPRO_2769SPRO_3662
SONE211586 SO_2490SO_2490SO_2490
SMED366394 SMED_4018SMED_4018SMED_2468SMED_4018
SLOI323850 SHEW_2049SHEW_2049SHEW_2049SHEW_2049
SHIGELLA YFETYFETYEBKYFHH
SHAE279808 SH0187SH0187SH0187SH0187
SGLO343509 SG1269SG1269SG1269SG1269
SFLE373384 SFV_2480SFV_2480SFV_1855SFV_2609
SFLE198214 AAN43986.1AAN43986.1AAN43420.1AAN44105.1
SERY405948 SACE_0353SACE_0353SACE_0353SACE_0353
SEPI176280 SE_1891SE_1891SE_1891
SEPI176279 SERP1901SERP1901SERP1901
SENT454169 SEHA_C1237SEHA_C2838SEHA_C2101SEHA_C2838
SENT321314 SCH_3530SCH_2567SCH_1893SCH_2567
SENT295319 SPA1724SPA0293SPA0982SPA0293
SENT220341 STY1163STY2818STY2095STY2818
SENT209261 T1794T0285T0990T0285
SDYS300267 SDY_2623SDY_2623SDY_1140SDY_2751
SDEN318161 SDEN_2080SDEN_2080SDEN_2080
SCO SCO4308SCO4308SCO7599SCO4308
SBOY300268 SBO_2452SBO_2452SBO_1161SBO_2589
SBAL402882 SHEW185_2129SHEW185_2129SHEW185_2129
SBAL399599 SBAL195_2174SBAL195_2174SBAL195_2174
SAVE227882 SAV3923SAV3923SAV3923SAV3923
SAUR93062 SACOL0314SACOL0179SACOL2308SACOL0179
SAUR93061 SAOUHSC_00297SAOUHSC_00160SAOUHSC_02589SAOUHSC_00160
SAUR426430 NWMN_0259NWMN_0137NWMN_2217NWMN_0137
SAUR418127 SAHV_0314SAHV_0192SAHV_2299SAHV_0192
SAUR367830 SAUSA300_0317SAUSA300_0195SAUSA300_2264SAUSA300_0195
SAUR359787 SAURJH1_0307SAURJH1_0183SAURJH1_2382SAURJH1_0183
SAUR359786 SAURJH9_0300SAURJH9_0178SAURJH9_2339SAURJH9_0178
SAUR282459 SAS0294SAS0168SAS2208SAS0168
SAUR282458 SAR0314SAR0194SAR2399SAR0194
SAUR273036 SAB0254CSAB0133SAB2192SAB0133
SAUR196620 MW0294MW0167MW2236MW0167
SAUR158879 SA0306SA0187SA2108SA0187
SAUR158878 SAV0317SAV0193SAV2315SAV0193
SARE391037 SARE_3960SARE_3209SARE_3960SARE_3209
RSOL267608 RSP1556RSP1556RSP1556
RMET266264 RMET_1044RMET_4771RMET_1044RMET_1044
RFER338969 RFER_1124RFER_1124RFER_1124
REUT381666 H16_A1177H16_B1066H16_A1177H16_B1066
REUT264198 REUT_A1080REUT_B4021REUT_A1080REUT_A1080
PSYR223283 PSPTO_5515PSPTO_5515PSPTO_1299PSPTO_5515
PSYR205918 PSYR_5064PSYR_5064PSYR_1119PSYR_5064
PSTU379731 PST_0183PST_0183PST_3498
PSP296591 BPRO_0750BPRO_0750BPRO_0750
PPUT76869 PPUTGB1_5399PPUTGB1_5399PPUTGB1_1019PPUTGB1_5399
PPUT351746 PPUT_5258PPUT_5258PPUT_1059PPUT_5258
PPUT160488 PP_5350PP_5350PP_1021PP_5350
PPRO298386 PBPRA2286PBPRA2286PBPRA2430PBPRA2286
PPEN278197 PEPE_1363PEPE_0094PEPE_1363PEPE_1363
PNAP365044 PNAP_0652PNAP_0652PNAP_0652
PMUL272843 PM1714PM1577PM1714PM1577
PMOB403833 PMOB_0521PMOB_0521PMOB_0070PMOB_0070
PMEN399739 PMEN_4485PMEN_4485PMEN_3144PMEN_4485
PLUM243265 PLU2121PLU2121PLU2121
PING357804 PING_2360PING_2360PING_2360
PFLU220664 PFL_6160PFL_4611PFL_4611PFL_6160
PFLU216595 PFLU6073PFLU4840PFLU4840PFLU6073
PFLU205922 PFL_5642PFL_5642PFL_4364PFL_5642
PENT384676 PSEEN5499PSEEN5499PSEEN4406PSEEN5499
PATL342610 PATL_4164PATL_4164PATL_0969PATL_4164
PAER208964 PA3184PA3184PA3184PA5438
PAER208963 PA14_23060PA14_23060PA14_23060PA14_71780
PACN267747 PPA1140PPA1140PPA1140PPA1140
OIHE221109 OB0613OB0613OB0613OB0613
OANT439375 OANT_3122OANT_3122OANT_3892OANT_3122
NMEN374833 NMCC_1304NMCC_1304NMCC_1304NMCC_1304
NMEN272831 NMC1328NMC1328NMC1328NMC1328
NMEN122587 NMA1605NMA1605NMA1605NMA1605
NMEN122586 NMB_1389NMB_1389NMB_1389NMB_1389
NGON242231 NGO0718NGO0718NGO0718NGO0718
NARO279238 SARO_1547SARO_1547SARO_1547SARO_1547
MSUC221988 MS0198MS0198MS0198MS0198
MSP400668 MMWYL1_1082MMWYL1_1082MMWYL1_1082
MSME246196 MSMEG_0192MSMEG_0192MSMEG_0192MSMEG_0192
MLOT266835 MLR7253MLR7253MLR4153MLR7253
MAQU351348 MAQU_1835MAQU_1835MAQU_1835
LXYL281090 LXX02630LXX02630LXX02630LXX02630
LWEL386043 LWE1678LWE1678LWE1678LWE1678
LSPH444177 BSPH_0769BSPH_0769BSPH_0769BSPH_0769
LSAK314315 LSA0296LSA0296LSA0296LSA0296
LPLA220668 LP_1157LP_1157LP_1157LP_3559
LMON265669 LMOF2365_1683LMOF2365_1683LMOF2365_1683
LMES203120 LEUM_0550LEUM_0550LEUM_0550LEUM_0550
LLAC272623 L192289L147291L54944L147291
LLAC272622 LACR_2498LACR_1243LACR_2498LACR_1243
LJOH257314 LJ_0612LJ_0528LJ_1817LJ_0528
LHEL405566 LHV_1519LHV_1519LHV_1519
LGAS324831 LGAS_1686LGAS_1770LGAS_1541LGAS_1770
LCHO395495 LCHO_3388LCHO_3388LCHO_3388
LCAS321967 LSEI_0226LSEI_2775LSEI_0226LSEI_2775
LBRE387344 LVIS_1584LVIS_1584LVIS_1584
LACI272621 LBA1702LBA1702LBA1702
KRAD266940 KRAD_0770KRAD_0770KRAD_0770KRAD_0770
KPNE272620 GKPORF_A0116GKPORF_B2217GKPORF_B1526GKPORF_B2217
JSP290400 JANN_3802JANN_3802JANN_3802
HSOM228400 HSM_0555HSM_1107HSM_1107HSM_1107
HSOM205914 HS_0696HS_0696HS_0696HS_0696
HNEP81032 HNE_2458HNE_2458HNE_2458HNE_2458
HINF71421 HI_0143HI_0143HI_0143HI_0143
HINF374930 CGSHIEE_02570CGSHIEE_02570CGSHIEE_02570CGSHIEE_02570
HINF281310 NTHI0229NTHI0229NTHI0229NTHI0229
HDUC233412 HD_1380HD_1380HD_1380HD_1380
HCHE349521 HCH_00740HCH_00346HCH_00346HCH_00740
GTHE420246 GTNG_1879GTNG_1879GTNG_1879GTNG_1879
FSP106370 FRANCCI3_1970FRANCCI3_1970FRANCCI3_2832FRANCCI3_1970
FALN326424 FRAAL4364FRAAL4364FRAAL4364FRAAL4364
ESP42895 ENT638_3232ENT638_3048ENT638_2422ENT638_3048
EFER585054 EFER_4281EFER_0745EFER_1219EFER_0514
EFAE226185 EF_0539EF_2434EF_3144EF_0458
ECOO157 YFETYFETYEBKYFHH
ECOL83334 ECS3298ECS3298ECS2563ECS3427
ECOL585397 ECED1_4823ECED1_2989ECED1_2058ECED1_2989
ECOL585057 ECIAI39_4513ECIAI39_2572ECIAI39_1196ECIAI39_2765
ECOL585056 ECUMN_2748ECUMN_2748ECUMN_2151ECUMN_2881
ECOL585055 EC55989_2716EC55989_2716EC55989_2032EC55989_2848
ECOL585035 ECS88_4590ECS88_2733ECS88_1910ECS88_2733
ECOL585034 ECIAI1_2484ECIAI1_2484ECIAI1_1926ECIAI1_2616
ECOL481805 ECOLC_3937ECOLC_1252ECOLC_1779ECOLC_1116
ECOL469008 ECBD_3941ECBD_1254ECBD_1785ECBD_1121
ECOL439855 ECSMS35_4555ECSMS35_2582ECSMS35_1333ECSMS35_2714
ECOL413997 ECB_03961ECB_02327ECB_01824ECB_02455
ECOL409438 ECSE_4387ECSE_2717ECSE_2029ECSE_2849
ECOL405955 APECO1_2361APECO1_3970APECO1_903APECO1_3970
ECOL364106 UTI89_C4684UTI89_C2881UTI89_C2057UTI89_C2881
ECOL362663 ECP_4332ECP_2563ECP_1797ECP_2563
ECOL331111 ECE24377A_2713ECE24377A_2713ECE24377A_2083ECE24377A_2846
ECOL316407 ECK4082:JW4050:B4089ECK2422:JW2420:B2427ECK1854:JW1842:B1853ECK2559:JW2545:B2561
ECOL199310 C5095C3085C2267C3085
ECAR218491 ECA2480ECA2480ECA2480ECA2480
DGEO319795 DGEO_2822DGEO_2822DGEO_2822DGEO_2822
CVIO243365 CV_0148CV_0148CV_0148
CSAL290398 CSAL_3272CSAL_2742CSAL_2742CSAL_2742
CPSY167879 CPS_2280CPS_2280CPS_2280
CPHY357809 CPHY_3564CPHY_1122CPHY_3564CPHY_1122
CPER289380 CPR_0179CPR_0179CPR_0179CPR_0179
CPER195103 CPF_0182CPF_0182CPF_0182CPF_0182
CPER195102 CPE0189CPE0189CPE0189CPE0189
CDIF272563 CD3044CD3044CD2235CD3044
CBOT536232 CLM_1519CLM_1519CLM_1519CLM_1519
CBOT515621 CLJ_B1460CLJ_B1460CLJ_B1460CLJ_B1460
CBOT508765 CLL_A1309CLL_A1309CLL_A1309CLL_A1309
CBOT498213 CLD_3193CLD_3193CLD_3193CLD_3193
CBOT441772 CLI_1442CLI_1442CLI_1442CLI_1442
CBOT441771 CLC_1380CLC_1380CLC_1380
CBOT441770 CLB_1370CLB_1370CLB_1370CLB_1370
CBOT36826 CBO1342CBO1342CBO1342CBO1342
CBEI290402 CBEI_2191CBEI_1920CBEI_2191CBEI_2191
CACE272562 CAC0191CAC0191CAC0191CAC0191
BWEI315730 BCERKBAB4_2088BCERKBAB4_2088BCERKBAB4_2088BCERKBAB4_2088
BVIE269482 BCEP1808_0627BCEP1808_0627BCEP1808_0627BCEP1808_0627
BTHU412694 BALH_0744BALH_0744BALH_0744BALH_0744
BTHU281309 BT9727_0731BT9727_0731BT9727_0731BT9727_0731
BTHA271848 BTH_I1216BTH_I1216BTH_I1216BTH_I1216
BSUB BSU01690BSU01690BSU01690BSU01690
BSP36773 BCEP18194_A3745BCEP18194_A3745BCEP18194_A3745BCEP18194_A3745
BPUM315750 BPUM_3603BPUM_3603BPUM_3558BPUM_3558
BPSE320373 BURPS668_3409BURPS668_3409BURPS668_3409BURPS668_3409
BPSE320372 BURPS1710B_A3722BURPS1710B_A3722BURPS1710B_A3722BURPS1710B_A3722
BPSE272560 BPSL2933BPSL2933BPSL2933BPSL2933
BMAL320389 BMA10247_2634BMA10247_2634BMA10247_2634BMA10247_2634
BMAL320388 BMASAVP1_A0365BMASAVP1_A0365BMASAVP1_A0365BMASAVP1_A0365
BMAL243160 BMA_2447BMA_2447BMA_2447BMA_2447
BLON206672 BL1137BL1137BL1137
BLIC279010 BL02719BL02719BL02719BL02719
BHAL272558 BH2675BH2675BH2675BH2675
BCLA66692 ABC0305ABC0305ABC0305ABC0305
BCER572264 BCA_0884BCA_0884BCA_0884BCA_0884
BCER405917 BCE_2295BCE_2295BCE_2295BCE_2295
BCER315749 BCER98_1662BCER98_1662BCER98_1662BCER98_1662
BCER288681 BCE33L0717BCE33L0717BCE33L0717BCE33L0717
BCER226900 BC_2218BC_2218BC_2218BC_2218
BCEN331272 BCEN2424_0659BCEN2424_0659BCEN2424_0659BCEN2424_0659
BCEN331271 BCEN_0176BCEN_0176BCEN_0176BCEN_0176
BANT592021 BAA_0930BAA_0930BAA_0930BAA_0930
BANT568206 BAMEG_3735BAMEG_3735BAMEG_3735BAMEG_3735
BANT261594 GBAA0821GBAA0821GBAA0821GBAA0821
BANT260799 BAS0782BAS0782BAS0782BAS0782
BAMY326423 RBAM_031420RBAM_031420RBAM_031420RBAM_031420
BAMB398577 BAMMC406_0580BAMMC406_0580BAMMC406_0580BAMMC406_0580
BAMB339670 BAMB_0554BAMB_0554BAMB_0554BAMB_0554
ASP232721 AJS_0694AJS_0694AJS_0694
ASP1667 ARTH_1799ARTH_1799ARTH_1799ARTH_1799
ASAL382245 ASA_1322ASA_1322ASA_1322ASA_1322
APLE434271 APJL_0705APJL_0705APJL_0705APJL_0705
APLE416269 APL_0706APL_0706APL_0706APL_0706
AMET293826 AMET_4190AMET_4190AMET_4190AMET_4190
ALAI441768 ACL_0262ACL_0262ACL_0262
AHYD196024 AHA_0409AHA_0409AHA_1350AHA_0409
AAVE397945 AAVE_0941AAVE_0941AAVE_0941
AAUR290340 AAUR_4073AAUR_4073AAUR_4073AAUR_4073


Organism features enriched in list (features available for 212 out of the 223 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 2.226e-81717
Arrangment:Pairs 3.158e-1476112
Disease:Botulism 0.006168455
Disease:Bubonic_plague 0.002209166
Disease:Dysentery 0.002209166
Disease:Gastroenteritis 0.00272631013
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00001241111
Endospores:No 0.000064856211
Endospores:Yes 6.769e-93953
Genome_Size_Range5:0-2 8.793e-2112155
Genome_Size_Range5:2-4 0.003276158197
Genome_Size_Range5:4-6 9.810e-17112184
Genome_Size_Range5:6-10 0.00004483047
Genome_Size_Range9:1-2 9.398e-1512128
Genome_Size_Range9:3-4 0.00031751577
Genome_Size_Range9:4-5 9.065e-75696
Genome_Size_Range9:5-6 1.115e-85688
Genome_Size_Range9:6-8 0.00002612638
Gram_Stain:Gram_Pos 3.789e-780150
Habitat:Aquatic 0.00062912091
Habitat:Multiple 3.054e-689178
Habitat:Terrestrial 0.00620011831
Motility:No 0.007790744151
Motility:Yes 0.0003361116267
Optimal_temp.:25-35 0.00616041014
Optimal_temp.:30-37 0.00004211518
Oxygen_Req:Aerobic 0.008352456185
Oxygen_Req:Anaerobic 0.000455823102
Oxygen_Req:Facultative 2.030e-15117201
Oxygen_Req:Microaerophilic 0.0027067118
Pathogenic_in:Human 1.048e-6104213
Pathogenic_in:No 0.001152066226
Shape:Rod 9.788e-11162347
Shape:Sphere 0.0017901119
Temp._range:Mesophilic 1.885e-8196473
Temp._range:Thermophilic 0.0001161335



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 386
Effective number of orgs (counting one per cluster within 468 clusters): 312

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEG203122 ncbi Saccharophagus degradans 2-400
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NHAM323097 ncbi Nitrobacter hamburgensis X140
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON169963 ncbi Listeria monocytogenes EGD-e1
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7821   G7262   EG12860   EG12308   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TROS309801
TPSE340099
TPEN368408
TPAL243276
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101 SPR1518
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SLAC55218
SGOR29390 SGO_0127
SFUM335543
SELO269084
SDEG203122
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSP101510
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_3138
RAKA293614
PTOR263820
PTHE370438
PSP56811
PSP312153
PSP117
PRUM264731
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NHAM323097
NFAR247156
NEUT335283
NEUR228410
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSP266779
MSP189918
MSP164757
MSP164756
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON169963 LMO2795
LINT363253
LINT267671
LINT189518
LINN272626 LIN2927
LDEL390333
LDEL321956
LBOR355277
LBOR355276
LBIF456481
LBIF355278
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761
HMAR272569
HHEP235279
HHAL349124
HBUT415426
HAUR316274
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CSP501479
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CNOV386415
CMUR243161
CMIC443906 CMM_2189
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077 CJA_0347
CHYD246194
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSUI470137 BSUIS_B0736
BSUI204722 BR_A0744
BSP376
BSP107806
BQUI283165
BPER257313
BPAR257311
BOVI236 GBOORFA0765
BMEL359391 BAB2_0494
BMEL224914 BMEII0545
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCAN483179 BCAN_B0752
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
BABO262698 BRUAB2_0488
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAEO224324


Organism features enriched in list (features available for 358 out of the 386 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 4.512e-1335112
Disease:Gastroenteritis 0.0044970313
Disease:Wide_range_of_infections 0.00440751111
Endospores:No 0.0000478151211
Endospores:Yes 5.216e-81453
GC_Content_Range4:0-40 0.0018764146213
GC_Content_Range4:40-60 0.0063335125224
GC_Content_Range7:50-60 0.005698955107
Genome_Size_Range5:0-2 2.849e-23143155
Genome_Size_Range5:2-4 0.0010867137197
Genome_Size_Range5:4-6 9.190e-1866184
Genome_Size_Range5:6-10 1.734e-71247
Genome_Size_Range9:0-1 1.290e-62727
Genome_Size_Range9:1-2 1.354e-16116128
Genome_Size_Range9:3-4 0.00048956077
Genome_Size_Range9:4-5 4.104e-73796
Genome_Size_Range9:5-6 3.230e-92988
Genome_Size_Range9:6-8 9.712e-7938
Gram_Stain:Gram_Pos 3.812e-669150
Habitat:Aquatic 0.00148996891
Habitat:Multiple 7.963e-686178
Habitat:Specialized 0.00473974153
Motility:No 0.0027022106151
Motility:Yes 0.0000318141267
Optimal_temp.:25-35 0.0098026414
Optimal_temp.:30-37 0.0000951318
Oxygen_Req:Anaerobic 0.000192278102
Oxygen_Req:Facultative 1.716e-1579201
Oxygen_Req:Microaerophilic 0.00154521718
Pathogenic_in:Human 0.0000228108213
Pathogenic_in:No 0.0071382151226
Shape:Irregular_coccus 0.00021591717
Shape:Rod 3.540e-12174347
Shape:Sphere 0.00098441819
Shape:Spiral 3.331e-83434
Temp._range:Mesophilic 6.964e-8267473
Temp._range:Thermophilic 0.00004213235



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
IDNCAT-PWY (L-idonate degradation)2461620.5065
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))1211010.4883
PWY-6196 (serine racemization)102880.4659
SERDEG-PWY (L-serine degradation)3491920.4525
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561940.4504
RIBOKIN-PWY (ribose degradation)2791660.4453
PWY0-1314 (fructose degradation)2241430.4383
PWY-5676 (acetyl-CoA fermentation to butyrate II)2841650.4258
GALACTITOLCAT-PWY (galactitol degradation)73670.4255
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701580.4146
GLUCARDEG-PWY (D-glucarate degradation I)1521060.4022



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7262   EG12860   EG12308   
G78210.999830.9998270.999846
G72620.9997140.999858
EG128600.99973
EG12308



Back to top


PAIRWISE BLAST SCORES:

  G7821   G7262   EG12860   EG12308   
G78210.0f01.8e-212.9e-15-
G72625.2e-220.0f03.8e-197.4e-39
EG12860-3.8e-190.0f0-
EG123082.6e-122.6e-36-0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7821 (centered at G7821)
G7262 (centered at G7262)
EG12860 (centered at EG12860)
EG12308 (centered at EG12308)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7821   G7262   EG12860   EG12308   
232/623212/623239/623221/623
AAUR290340:2:Tyes0000
AAVE397945:0:Tyes0-00
AHYD196024:0:Tyes009220
ALAI441768:0:Tyes00-0
AMET293826:0:Tyes0000
APLE416269:0:Tyes0000
APLE434271:0:Tno0000
ASAL382245:5:Tyes0000
ASP1667:3:Tyes0000
ASP232721:2:Tyes0-00
BABO262698:0:Tno--0-
BAMB339670:3:Tno0000
BAMB398577:3:Tno0000
BAMY326423:0:Tyes0000
BANT260799:0:Tno0000
BANT261594:2:Tno0000
BANT568206:2:Tyes0000
BANT592021:2:Tno0000
BCAN483179:0:Tno--0-
BCEN331271:2:Tno0000
BCEN331272:3:Tyes0000
BCER226900:1:Tyes0000
BCER288681:0:Tno0000
BCER315749:1:Tyes0000
BCER405917:1:Tyes0000
BCER572264:1:Tno0000
BCLA66692:0:Tyes0000
BHAL272558:0:Tyes0000
BJAP224911:0:Fyes0-0-
BLIC279010:0:Tyes0000
BLON206672:0:Tyes000-
BMAL243160:1:Tno0000
BMAL320388:1:Tno0000
BMAL320389:1:Tyes0000
BMEL224914:0:Tno--0-
BMEL359391:0:Tno--0-
BOVI236:0:Tyes--0-
BPET94624:0:Tyes0-0-
BPSE272560:1:Tyes0000
BPSE320372:1:Tno0000
BPSE320373:1:Tno0000
BPUM315750:0:Tyes454500
BSP36773:2:Tyes0000
BSUB:0:Tyes0000
BSUI204722:0:Tyes--0-
BSUI470137:0:Tno--0-
BTHA271848:1:Tno0000
BTHU281309:1:Tno0000
BTHU412694:1:Tno0000
BVIE269482:7:Tyes0000
BWEI315730:4:Tyes0000
BXEN266265:1:Tyes0-0-
CACE272562:1:Tyes0000
CBEI290402:0:Tyes2680268268
CBOT36826:1:Tno0000
CBOT441770:0:Tyes0000
CBOT441771:0:Tno00-0
CBOT441772:1:Tno0000
CBOT498213:1:Tno0000
CBOT508765:1:Tyes0000
CBOT515621:2:Tyes0000
CBOT536232:0:Tno0000
CDIF272563:1:Tyes8128120812
CJAP155077:0:Tyes--0-
CMIC443906:2:Tyes---0
CPER195102:1:Tyes0000
CPER195103:0:Tno0000
CPER289380:3:Tyes0000
CPHY357809:0:Tyes2418024180
CPSY167879:0:Tyes000-
CSAL290398:0:Tyes534000
CVIO243365:0:Tyes0-00
DGEO319795:0:Tyes0000
ECAR218491:0:Tyes0000
ECOL199310:0:Tno27878070807
ECOL316407:0:Tno22115780706
ECOL331111:6:Tno6026020729
ECOL362663:0:Tno25257680768
ECOL364106:1:Tno26088240824
ECOL405955:2:Tyes24287960796
ECOL409438:6:Tyes24277050837
ECOL413997:0:Tno21805130639
ECOL439855:4:Tno3117123001362
ECOL469008:0:Tno27951326650
ECOL481805:0:Tno28181356620
ECOL585034:0:Tno5615610692
ECOL585035:0:Tno25837980798
ECOL585055:0:Tno6736730803
ECOL585056:2:Tno6086080742
ECOL585057:0:Tno3317135801545
ECOL585397:0:Tno27149160916
ECOL83334:0:Tno7567560885
ECOLI:0:Tno22715850726
ECOO157:0:Tno7217210851
EFAE226185:3:Tyes71185125210
EFER585054:1:Tyes37252286980
ESP42895:1:Tyes8276370637
FALN326424:0:Tyes0000
FSP106370:0:Tyes008470
GTHE420246:1:Tyes0000
HARS204773:0:Tyes0-0-
HCHE349521:0:Tyes38000380
HDUC233412:0:Tyes0000
HINF281310:0:Tyes0000
HINF374930:0:Tyes0000
HINF71421:0:Tno0000
HNEP81032:0:Tyes0000
HSOM205914:1:Tyes0000
HSOM228400:0:Tno0561561561
JSP290400:1:Tyes00-0
JSP375286:0:Tyes0-0-
KPNE272620:0:Tyes0---
KPNE272620:2:Tyes-6750675
KRAD266940:2:Fyes0000
LACI272621:0:Tyes-000
LBRE387344:2:Tyes0-00
LCAS321967:1:Tyes0247402474
LCHO395495:0:Tyes0-00
LGAS324831:0:Tyes811650165
LHEL405566:0:Tyes-000
LINN272626:1:Tno---0
LJOH257314:0:Tyes08416584
LLAC272622:5:Tyes1179011790
LLAC272623:0:Tyes43010530
LMES203120:1:Tyes0000
LMON169963:0:Tno---0
LMON265669:0:Tyes-000
LPLA220668:0:Tyes0001997
LSAK314315:0:Tyes0000
LSPH444177:1:Tyes0000
LWEL386043:0:Tyes0000
LXYL281090:0:Tyes0000
MAQU351348:2:Tyes000-
MLOT266835:2:Tyes2533253302533
MSME246196:0:Tyes0000
MSP400668:0:Tyes0-00
MSUC221988:0:Tyes0000
NARO279238:0:Tyes0000
NGON242231:0:Tyes0000
NMEN122586:0:Tno0000
NMEN122587:0:Tyes0000
NMEN272831:0:Tno0000
NMEN374833:0:Tno0000
OANT439375:4:Tyes007670
OIHE221109:0:Tyes0000
PACN267747:0:Tyes0000
PAER208963:0:Tyes0003974
PAER208964:0:Tno0002287
PATL342610:0:Tyes3227322703227
PENT384676:0:Tyes1031103101031
PFLU205922:0:Tyes1295129501295
PFLU216595:1:Tyes1203001203
PFLU220664:0:Tyes1517001517
PING357804:0:Tyes000-
PLUM243265:0:Fyes0-00
PMEN399739:0:Tyes1356135601356
PMOB403833:0:Tyes44944900
PMUL272843:1:Tyes13701370
PNAP365044:8:Tyes0-00
PPEN278197:0:Tyes1197011971197
PPRO298386:2:Tyes001420
PPUT160488:0:Tno4316431604316
PPUT351746:0:Tyes4223422304223
PPUT76869:0:Tno4415441504415
PSP296591:2:Tyes0-00
PSTU379731:0:Tyes003298-
PSYR205918:0:Tyes3972397203972
PSYR223283:2:Tyes4165416504165
RALB246199:0:Tyes---0
RETL347834:3:Tyes0-0-
REUT264198:2:Tyes-0--
REUT264198:3:Tyes0-00
REUT381666:1:Tyes-0-0
REUT381666:2:Tyes0-0-
RFER338969:1:Tyes0-00
RLEG216596:4:Tyes0-0-
RMET266264:1:Tyes-0--
RMET266264:2:Tyes0-00
RSAL288705:0:Tyes0--0
RSOL267608:0:Tyes0-00
SARE391037:0:Tyes74507450
SAUR158878:1:Tno124021940
SAUR158879:1:Tno122020750
SAUR196620:0:Tno127021470
SAUR273036:0:Tno114020630
SAUR282458:0:Tno114021910
SAUR282459:0:Tno129021220
SAUR359786:1:Tno122022120
SAUR359787:1:Tno124021620
SAUR367830:3:Tno122019890
SAUR418127:0:Tyes122021830
SAUR426430:0:Tno122021510
SAUR93061:0:Fno129023520
SAUR93062:1:Tno132020800
SAVE227882:1:Fyes0000
SBAL399599:3:Tyes000-
SBAL402882:1:Tno000-
SBOY300268:1:Tyes1230123001356
SCO:2:Fyes0032860
SDEN318161:0:Tyes000-
SDYS300267:1:Tyes1399139901515
SENT209261:0:Tno142906700
SENT220341:0:Tno014988341498
SENT295319:0:Tno136706620
SENT321314:2:Tno16666880688
SENT454169:2:Tno015458351545
SEPI176279:1:Tyes-000
SEPI176280:0:Tno-000
SERY405948:0:Tyes0000
SFLE198214:0:Tyes5915910710
SFLE373384:0:Tno5945940716
SGLO343509:3:Tyes0000
SGOR29390:0:Tyes---0
SHAE279808:0:Tyes0000
SHAL458817:0:Tyes0-0-
SHIGELLA:0:Tno5835830711
SLOI323850:0:Tyes0000
SMED366394:2:Tyes00-0
SMED366394:3:Tyes--0-
SMEL266834:2:Tyes0-0-
SONE211586:1:Tyes000-
SPEA398579:0:Tno0-0-
SPNE171101:0:Tno---0
SPRO399741:1:Tyes9039030903
SSAP342451:2:Tyes0000
SSED425104:0:Tyes0-0-
SSON300269:1:Tyes1161116101282
SSP292414:2:Tyes0-0-
SSP94122:1:Tyes000-
SSUI391295:0:Tyes00-0
SSUI391296:0:Tyes00-0
STRO369723:0:Tyes0000
STYP99287:1:Tyes014357531435
TFUS269800:0:Tyes0000
TLET416591:0:Tyes0000
TMAR243274:0:Tyes0000
TPET390874:0:Tno0000
TSP1755:0:Tyes0000
TSP28240:0:Tyes0000
TTEN273068:0:Tyes0209420942094
VCHO:0:Tyes009810
VCHO345073:1:Tno1796179601796
VEIS391735:1:Tyes0-0304
VFIS312309:2:Tyes0467242467
VPAR223926:0:Tyes-0-0
VPAR223926:1:Tyes0-0-
VVUL196600:1:Tyes00-0
VVUL196600:2:Tyes--0-
VVUL216895:0:Tno00-0
VVUL216895:1:Tno--0-
YENT393305:1:Tyes161257412930
YPES187410:5:Tno15709370
YPES214092:3:Tno9088190819
YPES349746:2:Tno348117601176
YPES360102:3:Tyes7649240924
YPES377628:2:Tno15403380
YPES386656:2:Tno1076121801218
YPSE273123:2:Tno6948400840
YPSE349747:2:Tno15308750



Back to top