CANDIDATE ID: 826

CANDIDATE ID: 826

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9902383e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7554 (hybO) (b2997)
   Products of gene:
     - MONOMER0-145 (hydrogenase 2, small subunit)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG11801 (hybC) (b2994)
   Products of gene:
     - HYBC-MONOMER (hydrogenase 2, large subunit)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG11800 (hybB) (b2995)
   Products of gene:
     - EG11800-MONOMER (predicted hydrogenase 2 cytochrome b type component)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG11799 (hybA) (b2996)
   Products of gene:
     - HYBA-MONOMER (hydrogenase 2 4Fe-4S ferredoxin-type component)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 84
Effective number of orgs (counting one per cluster within 468 clusters): 56

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XAUT78245 ncbi Xanthobacter autotrophicus Py23
WSUC273121 ncbi Wolinella succinogenes DSM 17403
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TPEN368408 ncbi Thermofilum pendens Hrk 53
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-33
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB33
SPEA398579 ncbi Shewanella pealeana ATCC 7003453
SONE211586 ncbi Shewanella oneidensis MR-13
SLOI323850 ncbi Shewanella loihica PV-43
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H163
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PISL384616 ncbi Pyrobaculum islandicum DSM 41843
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135143
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MCAP243233 ncbi Methylococcus capsulatus Bath3
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HBUT415426 ncbi Hyperthermus butylicus DSM 54564
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DSP255470 ncbi Dehalococcoides sp. CBDB14
DSP216389 ncbi Dehalococcoides sp. BAV14
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DETH243164 ncbi Dehalococcoides ethenogenes 1954
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CCON360104 ncbi Campylobacter concisus 138263
BVIE269482 ncbi Burkholderia vietnamiensis G43
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43044
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAEO224324 ncbi Aquifex aeolicus VF53


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11801   EG11800   EG11799   
YENT393305 YE3609YE3606YE3607YE3608
XAUT78245 XAUT_2173XAUT_2174XAUT_0661
WSUC273121 WS1687WS1686WS0936
TROS309801 TRD_1878TRD_1877TRD_1973
TPEN368408 TPEN_0591TPEN_0592TPEN_1122
TDEN292415 TBD_1378TBD_1375TBD_1739
STYP99287 STM3150STM3147STM3148STM3149
SSP94122 SHEWANA3_1880SHEWANA3_1879SHEWANA3_2090
SSON300269 SSO_3142SSO_3139SSO_3140SSO_3141
SSED425104 SSED_1908SSED_1907SSED_0230
SPEA398579 SPEA_2033SPEA_2032SPEA_0439
SONE211586 SO_2099SO_2098SO_0102
SLOI323850 SHEW_1765SHEW_1764SHEW_0352
SHIGELLA S3245HYBCHYBBHYBA
SHAL458817 SHAL_2261SHAL_2262SHAL_0494
SFUM335543 SFUM_2953SFUM_2952SFUM_1149
SFLE373384 SFV_3050SFV_3047SFV_3048SFV_3049
SFLE198214 AAN44522.1AAN44519.1AAN44520.1AAN44521.1
SENT454169 SEHA_C3397SEHA_C3394SEHA_C3395SEHA_C3396
SENT321314 SCH_3091SCH_3088SCH_3089SCH_3090
SENT295319 SPA3018SPA3015SPA3016SPA3017
SENT220341 STY3321STY3318STY3319STY3320
SENT209261 T3071T3068T3069T3070
SDYS300267 SDY_3076SDY_3079SDY_3078SDY_3077
SBOY300268 SBO_2866SBO_2869SBO_2868SBO_2867
SBAL402882 SHEW185_1915SHEW185_1914SHEW185_0101
SBAL399599 SBAL195_1922SBAL195_1921SBAL195_0106
RFER338969 RFER_4088RFER_4091RFER_4090RFER_4089
REUT381666 PHG001PHG002H16_B1453
PTHE370438 PTH_1701PTH_1702PTH_1714PTH_1703
PISL384616 PISL_0200PISL_0197PISL_1995
PARS340102 PARS_1301PARS_1298PARS_0937
MSUC221988 MS2365MS2361MS2362MS2364
MPET420662 MPE_A2827MPE_A2826MPE_A0859
MMAG342108 AMB1650AMB1647AMB1648AMB1649
MCAP243233 MCA_0166MCA_0165MCA_1209
HMOD498761 HM1_0205HM1_0206HM1_1737
HBUT415426 HBUT_1371HBUT_1368HBUT_1394HBUT_1052
GURA351605 GURA_1943GURA_1946GURA_1945GURA_1944
GSUL243231 GSU_0782GSU_0785GSU_0784GSU_0783
GMET269799 GMET_3332GMET_3331GMET_1061GMET_1060
EFER585054 EFER_2940EFER_2937EFER_2938EFER_2939
ECOO157 Z4351HYBCHYBBHYBA
ECOL83334 ECS3882ECS3879ECS3880ECS3881
ECOL585397 ECED1_3647ECED1_3644ECED1_3645ECED1_3646
ECOL585057 ECIAI39_3493ECIAI39_3490ECIAI39_3491ECIAI39_3492
ECOL585056 ECUMN_3481ECUMN_3478ECUMN_3479ECUMN_3480
ECOL585055 EC55989_3414EC55989_3411EC55989_3412EC55989_3413
ECOL585035 ECS88_3379ECS88_3376ECS88_3377ECS88_3378
ECOL585034 ECIAI1_3146ECIAI1_3143ECIAI1_3144ECIAI1_3145
ECOL481805 ECOLC_0696ECOLC_0699ECOLC_0698ECOLC_0697
ECOL469008 ECBD_0741ECBD_0744ECBD_0743ECBD_0742
ECOL439855 ECSMS35_3283ECSMS35_3280ECSMS35_3281ECSMS35_3282
ECOL413997 ECB_00975ECB_02870ECB_02871ECB_02872
ECOL409438 ECSE_3282ECSE_3279ECSE_3280ECSE_3281
ECOL405955 APECO1_3425APECO1_3428APECO1_3427APECO1_3426
ECOL364106 UTI89_C3419UTI89_C3416UTI89_C3417UTI89_C3418
ECOL362663 ECP_3083ECP_3080ECP_3081ECP_3082
ECOL331111 ECE24377A_3466ECE24377A_3463ECE24377A_3464ECE24377A_3465
ECOL316407 ECK2991:JW2965:B2997ECK2988:JW2962:B2994ECK2989:JW5494:B2995ECK2990:JW2964:B2996
ECOL199310 C3734C3731C3732C3733
ECAR218491 ECA1225ECA1228ECA1227ECA1226
DVUL882 DVU_1921DVU_1922DVU_0534DVU_0535
DSP255470 CBDBA130CBDBA129CBDBA193CBDBA131
DSP216389 DEHABAV1_0257DEHABAV1_0258DEHABAV1_0166DEHABAV1_0256
DHAF138119 DSY2238DSY2239DSY4710DSY4711
DETH243164 DET_0111DET_0110DET_0186DET_0112
DDES207559 DDE_2137DDE_2138DDE_0651DDE_0652
DARO159087 DARO_3974DARO_3971DARO_3972DARO_3973
CHYD246194 CHY_1546CHY_1545CHY_1853CHY_0794
CDES477974 DAUD_1041DAUD_1042DAUD_1578DAUD_1579
CCON360104 CCC13826_0101CCC13826_0100CCC13826_1873
BVIE269482 BCEP1808_5931BCEP1808_5932BCEP1808_4487
ASAL382245 ASA_1788ASA_1791ASA_1790ASA_1789
APLE434271 APJL_1349APJL_1352APJL_1351APJL_1350
APLE416269 APL_1331APL_1334APL_1333APL_1332
AHYD196024 AHA_2526AHA_2523AHA_2524AHA_2525
AFUL224325 AF_1381AF_1380AF_0174AF_0175
AEHR187272 MLG_2029MLG_2028MLG_0634
ADEH290397 ADEH_0481ADEH_0478ADEH_0479ADEH_0480
ACRY349163 ACRY_0338ACRY_0337ACRY_2645
ACAU438753 AZC_0598AZC_0599AZC_1158
ABAC204669 ACID345_4237ACID345_4240ACID345_2602ACID345_4238
AAEO224324 AQ_965AQ_960AQ_1046


Organism features enriched in list (features available for 82 out of the 84 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0031570592
Arrangment:Pairs 0.000010531112
Disease:Dysentery 6.589e-666
Disease:Gastroenteritis 0.0041834613
Disease:Urinary_tract_infection 0.009313034
GC_Content_Range4:0-40 9.253e-171213
GC_Content_Range4:40-60 4.446e-1766224
GC_Content_Range7:30-40 3.655e-121166
GC_Content_Range7:50-60 2.052e-1645107
Genome_Size_Range5:0-2 0.00001077155
Genome_Size_Range5:2-4 0.008745219197
Genome_Size_Range5:4-6 3.855e-1254184
Genome_Size_Range9:1-2 0.00041267128
Genome_Size_Range9:4-5 0.00010562696
Genome_Size_Range9:5-6 1.571e-62888
Gram_Stain:Gram_Neg 1.789e-869333
Gram_Stain:Gram_Pos 1.511e-74150
Motility:No 8.218e-75151
Motility:Yes 4.546e-860267
Oxygen_Req:Aerobic 2.151e-95185
Oxygen_Req:Facultative 1.293e-953201
Shape:Coccus 0.0001766282
Shape:Rod 0.000201763347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 456
Effective number of orgs (counting one per cluster within 468 clusters): 342

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317581
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329531
YPES386656 ncbi Yersinia pestis Pestoides F1
YPES377628 ncbi Yersinia pestis Nepal5161
YPES360102 ncbi Yersinia pestis Antiqua1
YPES349746 ncbi Yersinia pestis Angola1
YPES214092 ncbi Yersinia pestis CO921
YPES187410 ncbi Yersinia pestis KIM 101
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP61
VVUL196600 ncbi Vibrio vulnificus YJ0161
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106331
VFIS312309 ncbi Vibrio fischeri ES1140
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F11
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)0
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-11
PPUT351746 ncbi Pseudomonas putida F11
PPUT160488 ncbi Pseudomonas putida KT24401
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO11
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT31
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-11
PENT384676 ncbi Pseudomonas entomophila L481
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM51
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP409 Methylobacterium sp.1
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785781
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans1
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
ESP42895 Enterobacter sp.1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIF272563 ncbi Clostridium difficile 6300
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2641
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP36773 Burkholderia sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6681
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BPSE272560 ncbi Burkholderia pseudomallei K962431
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102471
BMAL320388 ncbi Burkholderia mallei SAVP11
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24241
BCEN331271 ncbi Burkholderia cenocepacia AU 10541
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAMB339670 ncbi Burkholderia ambifaria AMMD1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N1
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11801   EG11800   EG11799   
ZMOB264203
YPSE349747 YPSIP31758_4118
YPSE273123 YPTB3928
YPES386656 YPDSF_0036
YPES377628 YPN_3704
YPES360102 YPA_3028
YPES349746 YPANGOLA_A3769
YPES214092 YPO4057
YPES187410 Y4077
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
VVUL216895 VV1_3033
VVUL196600 VV1252
VPAR223926 VP1448
VFIS312309
VEIS391735 VEIS_3995
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068 TTE1700
TSP28240
TSP1755
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TFUS269800
TELO197221
TDEN243275
TACI273075
SWOL335541 SWOL_0798
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP321332
SSP321327
SSP292414
SSP1148 SLL1226
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMA0005
SMED366394
SMAR399550 SMAR_1061
SLAC55218
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SELO269084 SYC1555_D
SDEN318161
SDEG203122
SCO
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655 SALA_3198
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117 RXYL_2725
RTYP257363
RSOL267608
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RMAS416276
RLEG216596
RFEL315456
REUT264198
RETL347834
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283
PSYR205918
PSTU379731 PST_0165
PSP56811
PSP312153
PSP296591
PSP117 RB377
PRUM264731
PPUT76869 PPUTGB1_0533
PPUT351746 PPUT_0524
PPUT160488 PP_0490
PPRO298386
PPEN278197
PMUL272843 PM0407
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUM243265 PLU4888
PINT246198
PING357804 PING_1215
PHOR70601 PH1294
PHAL326442
PGIN242619
PFUR186497 PF1332
PFLU220664
PFLU216595
PFLU205922 PFL_2699
PENT384676 PSEEN0565
PCRY335284
PCAR338963
PATL342610
PAST100379
PARC259536
PAER208964 PA4811
PAER208963 PA14_63580
PAER178306 PAE2860
PACN267747 PPA0516
PABY272844 PAB1892
OTSU357244
OIHE221109
OCAR504832 OCAR_6767
OANT439375 OANT_2864
NWIN323098
NSP35761
NSEN222891
NPHA348780
NOCE323261
NMUL323848 NMUL_A1673
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE187420 MTH1300
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_1302
MSP409 M446_5827
MSP400668
MSP266779
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158 MMARC6_0977
MMAR426368 MMARC7_0627
MMAR402880 MMARC5_0652
MMAR394221
MMAR368407 MEMAR_1007
MMAR267377 MMP0823
MLOT266835 MLL5613
MLEP272631
MLAB410358 MLAB_0015
MKAN190192 MK0266
MJAN243232 MJ_0029
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2332
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MART243272
MAQU351348
MAER449447 MAE_14210
MAEO419665 MAEO_0097
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673 LPC_2011
LPNE297246 LPP2532
LPNE297245 LPL2387
LPNE272624 LPG2467
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
KPNE272620 GKPORF_B5368
JSP375286
JSP290400 JANN_1442
ILOI283942
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HNEP81032
HMUK485914
HMAR272569 RRNAC1213
HINF71421 HI_0007
HINF374930 CGSHIEE_03280
HINF281310 NTHI0010
HHAL349124
HDUC233412
HCHE349521 HCH_00105
HAUR316274
HARS204773 HEAR3343
GVIO251221
GTHE420246
GOXY290633
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022 FPHI_0819
FNUC190304
FNOD381764
FMAG334413
ESP42895 ENT638_2053
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSHI398580 DSHI_1237
DRAD243230
DNOD246195
DGEO319795
CVIO243365 CV_3840
CVES412965 COSY_0784
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CSAL290398
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442 MBOO_2023
CMAQ397948
CKLU431943
CJEI306537
CJAP155077
CHUT269798
CGLU196627
CFEL264202
CEFF196164
CDIF272563
CCHL340177 CAG_0245
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT515621
CBLO291272
CBLO203907
CAULO
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848 BTH_II0708
BSUI470137
BSUI204722
BSUB
BSP36773 BCEP18194_B2099
BSP107806
BQUI283165
BPUM315750
BPSE320373 BURPS668_A2395
BPSE320372 BURPS1710B_B0860
BPSE272560 BPSS1666
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389 BMA10247_A0572
BMAL320388 BMASAVP1_1693
BMAL243160 BMA_A1682
BLON206672
BLIC279010
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCEN331272 BCEN2424_3985
BCEN331271 BCEN_4381
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAMB398577 BAMMC406_3880
BAMB339670 BAMB_3378
BAFZ390236
BABO262698
AYEL322098
AVAR240292 AVA_4595
AURANTIMONAS
ASP76114 EBA3055
ASP62977
ASP232721 AJS_2422
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726 AM1_D0187
AMAR234826
ALAI441768
ACEL351607 ACEL_1019
ABOR393595
ABAU360910 BAV3144
AAVE397945
AAUR290340


Organism features enriched in list (features available for 422 out of the 456 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00375321717
Arrangment:Pairs 0.006069371112
GC_Content_Range4:0-40 1.851e-9184213
GC_Content_Range4:40-60 1.543e-7135224
GC_Content_Range7:30-40 5.719e-8145166
GC_Content_Range7:50-60 2.509e-1050107
Genome_Size_Range5:0-2 0.0000536130155
Genome_Size_Range5:2-4 0.0007494158197
Genome_Size_Range5:4-6 6.980e-10102184
Genome_Size_Range9:0-1 0.00012792727
Genome_Size_Range9:1-2 0.0058076103128
Genome_Size_Range9:2-3 0.005814397120
Genome_Size_Range9:4-5 0.00020505596
Genome_Size_Range9:5-6 0.00001774788
Gram_Stain:Gram_Neg 0.0001194222333
Gram_Stain:Gram_Pos 0.0013056122150
Habitat:Host-associated 0.0019669163206
Habitat:Multiple 0.0010233114178
Motility:No 0.0005595124151
Motility:Yes 9.668e-9163267
Optimal_temp.:30-37 0.00268561818
Oxygen_Req:Aerobic 1.271e-7159185
Oxygen_Req:Anaerobic 0.000433960102
Oxygen_Req:Facultative 0.0025680132201
Oxygen_Req:Microaerophilic 8.470e-7318
Pathogenic_in:Animal 0.00028455966
Pathogenic_in:Human 0.0056918166213
Pathogenic_in:No 0.0016882149226
Shape:Coccus 4.380e-67582
Shape:Sphere 0.00192031919
Shape:Spiral 0.00024101534



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HBUT415426 ncbi Hyperthermus butylicus DSM 5456 0.00462092804


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11801   EG11800   EG11799   
HBUT415426 HBUT_1371HBUT_1368HBUT_1394HBUT_1052


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Optimal_temp.:95-106 0.001715311



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45330.4889
P283-PWY (hydrogen oxidation I (aerobic))78440.4755
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4500
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50310.4196
PWY-5673 (nitrate reduction III (dissimilatory))106470.4091



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11801   EG11800   EG11799   
G75540.9998490.9987460.998799
EG118010.9989080.998587
EG118000.999254
EG11799



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PAIRWISE BLAST SCORES:

  G7554   EG11801   EG11800   EG11799   
G75540.0f0---
EG11801-0.0f0--
EG11800--0.0f0-
EG11799---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- FORMHYDROG2-CPLX (hydrogenase 2) (degree of match pw to cand: 1.000, degree of match cand to pw: 1.000, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9986 EG11801 (hybC) HYBC-MONOMER (hydrogenase 2, large subunit)
   *in cand* 0.9993 0.9987 G7554 (hybO) MONOMER0-145 (hydrogenase 2, small subunit)
   *in cand* 0.9992 0.9987 EG11800 (hybB) EG11800-MONOMER (predicted hydrogenase 2 cytochrome b type component)
   *in cand* 0.9992 0.9986 EG11799 (hybA) HYBA-MONOMER (hydrogenase 2 4Fe-4S ferredoxin-type component)
  All candidate genes found in this pathway



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11799 EG11800 EG11801 G7554 (centered at EG11799)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7554   EG11801   EG11800   EG11799   
156/623197/62365/623152/623
AAEO224324:0:Tyes30-53
ABAC204669:0:Tyes1651165401652
ABAU360910:0:Tyes---0
ABUT367737:0:Tyes80--
ACAU438753:0:Tyes01-572
ACEL351607:0:Tyes-0--
ACRY349163:8:Tyes10-2315
ADEH290397:0:Tyes3012
AEHR187272:0:Tyes13831382-0
AFER243159:0:Tyes30--
AFUL224325:0:Tyes1190118901
AHYD196024:0:Tyes3012
AMAR329726:5:Tyes-0--
APLE416269:0:Tyes0321
APLE434271:0:Tno0321
ASAL382245:5:Tyes0321
ASP232721:2:Tyes---0
ASP62928:0:Tyes01--
ASP76114:2:Tyes---0
AVAR240292:3:Tyes-0--
BAMB339670:2:Tno---0
BAMB398577:2:Tno---0
BCEN331271:1:Tno---0
BCEN331272:2:Tyes---0
BJAP224911:0:Fyes52490--
BMAL243160:0:Tno---0
BMAL320388:0:Tno---0
BMAL320389:0:Tyes---0
BPSE272560:0:Tyes---0
BPSE320372:0:Tno---0
BPSE320373:0:Tno---0
BSP36773:1:Tyes---0
BSP376:0:Tyes01--
BTHA271848:0:Tno---0
BVIE269482:5:Tyes01--
BVIE269482:6:Tyes---0
BXEN266265:0:Tyes-0--
BXEN266265:1:Tyes---0
CACE272562:0:Tyes01--
CBEI290402:0:Tyes10--
CBOT36826:1:Tno10--
CBOT441770:0:Tyes10--
CBOT441771:0:Tno10--
CBOT441772:1:Tno10--
CBOT498213:1:Tno10--
CBOT508765:1:Tyes10--
CBOT536232:0:Tno10--
CCHL340177:0:Tyes-0--
CCON360104:2:Tyes10-998
CCUR360105:0:Tyes10--
CDES477974:0:Tyes01548549
CDIP257309:0:Tyes01--
CFET360106:0:Tyes10--
CHOM360107:1:Tyes01--
CHYD246194:0:Tyes73273110270
CJEJ192222:0:Tyes10--
CJEJ195099:0:Tno10--
CJEJ354242:2:Tyes10--
CJEJ360109:0:Tyes01--
CJEJ407148:0:Tno10--
CKOR374847:0:Tyes-360-0
CMET456442:0:Tyes-0--
CRUT413404:0:Tyes--01
CSP501479:7:Fyes10--
CTEP194439:0:Tyes-0-1445
CVES412965:0:Tyes--0-
CVIO243365:0:Tyes---0
DARO159087:0:Tyes3012
DDES207559:0:Tyes1512151301
DETH243164:0:Tyes10732
DHAF138119:0:Tyes0124832484
DOLE96561:0:Tyes--10
DPSY177439:2:Tyes01--
DRED349161:0:Tyes--0653
DSHI398580:5:Tyes---0
DSP216389:0:Tyes8990088
DSP255470:0:Tno10562
DVUL882:1:Tyes1381138201
ECAR218491:0:Tyes0321
ECOL199310:0:Tno3012
ECOL316407:0:Tno3012
ECOL331111:6:Tno4012
ECOL362663:0:Tno3012
ECOL364106:1:Tno3012
ECOL405955:2:Tyes3012
ECOL409438:6:Tyes3012
ECOL413997:0:Tno0189818991900
ECOL439855:4:Tno3012
ECOL469008:0:Tno0321
ECOL481805:0:Tno0321
ECOL585034:0:Tno3012
ECOL585035:0:Tno3012
ECOL585055:0:Tno3012
ECOL585056:2:Tno3012
ECOL585057:0:Tno3012
ECOL585397:0:Tno3012
ECOL83334:0:Tno3012
ECOLI:0:Tno3012
ECOO157:0:Tno3012
EFER585054:1:Tyes3012
ESP42895:1:Tyes---0
FALN326424:0:Tyes5510--
FJOH376686:0:Tyes01--
FPHI484022:1:Tyes-0--
FSP106370:0:Tyes8690--
FSP1855:0:Tyes01--
GMET269799:1:Tyes2277227610
GSUL243231:0:Tyes0321
GURA351605:0:Tyes0321
HACI382638:1:Tyes01--
HARS204773:0:Tyes---0
HBUT415426:0:Tyes3083053300
HCHE349521:0:Tyes-0--
HHEP235279:0:Tyes01--
HINF281310:0:Tyes---0
HINF374930:0:Tyes---0
HINF71421:0:Tno---0
HMAR272569:8:Tyes--0-
HMOD498761:0:Tyes10-1147
HPY:0:Tno01--
HPYL357544:1:Tyes01--
HPYL85963:0:Tno01--
IHOS453591:0:Tyes01--
JSP290400:1:Tyes---0
KPNE272620:2:Tyes---0
LCHO395495:0:Tyes10--
LINT363253:3:Tyes01--
LPNE272624:0:Tno-0--
LPNE297245:1:Fno-0--
LPNE297246:1:Fyes-0--
LPNE400673:0:Tno-0--
MACE188937:0:Tyes06--
MAEO419665:0:Tyes-0--
MAER449447:0:Tyes-0--
MAVI243243:0:Tyes01--
MBAR269797:1:Tyes70--
MCAP243233:0:Tyes10-974
MHUN323259:0:Tyes-0--
MJAN243232:2:Tyes-0--
MKAN190192:0:Tyes-0--
MLAB410358:0:Tyes-0--
MLOT266835:2:Tyes---0
MMAG342108:0:Tyes3012
MMAR267377:0:Tyes-0--
MMAR368407:0:Tyes-0--
MMAR402880:1:Tyes-0--
MMAR426368:0:Tyes-0--
MMAR444158:0:Tyes-0--
MMAZ192952:0:Tyes07--
MPET420662:1:Tyes19621961-0
MSED399549:0:Tyes10--
MSME246196:0:Tyes4550--
MSP164756:1:Tno10--
MSP164757:0:Tno10--
MSP189918:2:Tyes10--
MSP409:2:Tyes---0
MSTA339860:0:Tyes-0--
MSUC221988:0:Tyes4013
MTHE187420:0:Tyes-0--
MTHE264732:0:Tyes-1693-0
MVAN350058:0:Tyes490--
NMUL323848:3:Tyes-0--
NSP103690:6:Tyes079--
NSP387092:0:Tyes01--
OANT439375:4:Tyes---0
OCAR504832:0:Tyes---0
PABY272844:0:Tyes-0--
PACN267747:0:Tyes---0
PAER178306:0:Tyes---0
PAER208963:0:Tyes---0
PAER208964:0:Tno---0
PARS340102:0:Tyes354351-0
PDIS435591:0:Tyes01--
PENT384676:0:Tyes---0
PFLU205922:0:Tyes---0
PFUR186497:0:Tyes-0--
PHOR70601:0:Tyes-0--
PING357804:0:Tyes-0--
PISL384616:0:Tyes30-1764
PLUM243265:0:Fyes---0
PLUT319225:0:Tyes01--
PMUL272843:1:Tyes---0
PNAP365044:8:Tyes10--
PPUT160488:0:Tno---0
PPUT351746:0:Tyes---0
PPUT76869:0:Tno---0
PSP117:0:Tyes---0
PSTU379731:0:Tyes---0
PTHE370438:0:Tyes01132
RCAS383372:0:Tyes10--
REUT381666:0:Tyes01--
REUT381666:1:Tyes---0
RFER338969:1:Tyes0321
RMET266264:2:Tyes10--
RPAL258594:0:Tyes01--
RPAL316055:0:Tyes01--
RPAL316056:0:Tyes10--
RPAL316057:0:Tyes01--
RRUB269796:1:Tyes01--
RSP101510:3:Fyes01--
RSP357808:0:Tyes01--
RSPH272943:4:Tyes01--
RSPH349101:2:Tno01--
RSPH349102:4:Tyes10--
RXYL266117:0:Tyes---0
SACI56780:0:Tyes-0-2284
SALA317655:0:Fyes-0--
SAVE227882:1:Fyes01--
SBAL399599:3:Tyes18501849-0
SBAL402882:1:Tno18291828-0
SBOY300268:1:Tyes0321
SDYS300267:1:Tyes0321
SELO269084:0:Tyes-0--
SENT209261:0:Tno3012
SENT220341:0:Tno3012
SENT295319:0:Tno3012
SENT321314:2:Tno3012
SENT454169:2:Tno3012
SERY405948:0:Tyes01--
SFLE198214:0:Tyes3012
SFLE373384:0:Tno3012
SFUM335543:0:Tyes17851784-0
SHAL458817:0:Tyes18331834-0
SHIGELLA:0:Tno3012
SLOI323850:0:Tyes14451444-0
SMAR399550:0:Tyes-0--
SMEL266834:0:Tyes---0
SONE211586:1:Tyes19671966-0
SPEA398579:0:Tno16511650-0
SPRO399741:1:Tyes-0-495
SSED425104:0:Tyes17371736-0
SSON300269:1:Tyes3012
SSP1148:0:Tyes-0--
SSP387093:0:Tyes10--
SSP94122:1:Tyes10-214
STHE292459:0:Tyes--01
STYP99287:1:Tyes3012
SWOL335541:0:Tyes---0
TCRU317025:0:Tyes10--
TDEN292415:0:Tyes30-371
TDEN326298:0:Tyes10--
TERY203124:0:Tyes10--
TKOD69014:0:Tyes-0-6
TPEN368408:1:Tyes01-524
TROS309801:1:Tyes10-95
TTEN273068:0:Tyes-0--
UMET351160:0:Tyes10--
VEIS391735:1:Tyes---0
VPAR223926:1:Tyes---0
VVUL196600:2:Tyes---0
VVUL216895:1:Tno---0
WSUC273121:0:Tyes674673-0
XAUT78245:1:Tyes15221523-0
YENT393305:1:Tyes3012
YPES187410:5:Tno---0
YPES214092:3:Tno---0
YPES349746:2:Tno---0
YPES360102:3:Tyes---0
YPES377628:2:Tno---0
YPES386656:2:Tno---0
YPSE273123:2:Tno---0
YPSE349747:2:Tno---0



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