CANDIDATE ID: 832

CANDIDATE ID: 832

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9926100e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7590 (rfaE) (b3052)
   Products of gene:
     - G7590-MONOMER (fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase)
     - CPLX0-3661 (fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase)
       Reactions:
        D-glycero-beta-D-manno-heptose 1-phosphate + ATP  ->  ADP-D-glycero-beta-D-manno-heptose + diphosphate
         In pathways
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)
        D-glycero-D-manno-heptose-7-phosphate + ATP  ->  D-glycero-beta-D-manno-heptose 1,7-diphosphate + ADP + 2 H+
         In pathways
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)

- G6106 (lpcA) (b0222)
   Products of gene:
     - G6106-MONOMER (D-sedoheptulose 7-phosphate isomerase)
     - CPLX0-7660 (D-sedoheptulose 7-phosphate isomerase)
       Reactions:
        D-sedoheptulose-7-phosphate  ->  D-glycero-D-manno-heptose-7-phosphate
         In pathways
         PWY-6478 (PWY-6478)
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)

- EG12780 (diaA) (b3149)
   Products of gene:
     - YRAO-MONOMER (DnaA initiator-associating factor for replication initiation)
     - CPLX0-3221 (DnaA initiator-associating factor for replication initiation)

- EG11736 (gmhB) (b0200)
   Products of gene:
     - EG11736-MONOMER (D,D-heptose 1,7-bisphosphate phosphatase)
       Reactions:
        D-glycero-beta-D-manno-heptose 1,7-diphosphate + H2O  ->  D-glycero-beta-D-manno-heptose 1-phosphate + phosphate
         In pathways
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 258
Effective number of orgs (counting one per cluster within 468 clusters): 187

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TVOL273116 ncbi Thermoplasma volcanium GSS14
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB43
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12514
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
TACI273075 ncbi Thermoplasma acidophilum DSM 17284
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STRO369723 ncbi Salinispora tropica CNB-4404
SSP94122 ncbi Shewanella sp. ANA-34
SSP1148 ncbi Synechocystis sp. PCC 68033
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SARE391037 ncbi Salinispora arenicola CNS-2054
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSP357808 ncbi Roseiflexus sp. RS-14
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
PTOR263820 ncbi Picrophilus torridus DSM 97903
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PMAR74546 ncbi Prochlorococcus marinus MIT 93123
PMAR167540 Prochlorococcus marinus pastoris MED4ax4
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13754
PMAR146891 ncbi Prochlorococcus marinus AS96014
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c3
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM54
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NSP387092 ncbi Nitratiruptor sp. SB155-24
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NFAR247156 ncbi Nocardia farcinica IFM 101524
NEUT335283 ncbi Nitrosomonas eutropha C913
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra3
MTUB336982 ncbi Mycobacterium tuberculosis F113
MTBRV ncbi Mycobacterium tuberculosis H37Rv3
MTBCDC ncbi Mycobacterium tuberculosis CDC15513
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P23
MBOV233413 ncbi Mycobacterium bovis AF2122/973
MAVI243243 ncbi Mycobacterium avium 1044
MAQU351348 ncbi Marinobacter aquaeolei VT84
MAER449447 ncbi Microcystis aeruginosa NIES-8433
MAEO419665 ncbi Methanococcus aeolicus Nankai-34
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 13
LLAC272622 ncbi Lactococcus lactis cremoris SK113
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-004
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1303
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566013
LCHO395495 ncbi Leptothrix cholodnii SP-63
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1973
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5503
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)3
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)3
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
JSP290400 ncbi Jannaschia sp. CCS13
ILOI283942 ncbi Idiomarina loihiensis L2TR3
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HPYL85963 ncbi Helicobacter pylori J994
HPYL357544 ncbi Helicobacter pylori HPAG14
HPY ncbi Helicobacter pylori 266954
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHEP235279 ncbi Helicobacter hepaticus ATCC 514494
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HARS204773 ncbi Herminiimonas arsenicoxydans3
HACI382638 ncbi Helicobacter acinonychis Sheeba4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255864
FALN326424 ncbi Frankia alni ACN14a4
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DSP216389 ncbi Dehalococcoides sp. BAV13
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DETH243164 ncbi Dehalococcoides ethenogenes 1953
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE253
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10624
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CJEJ407148 ncbi Campylobacter jejuni jejuni 811164
CJEJ360109 ncbi Campylobacter jejuni doylei 269.974
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1764
CJEJ195099 ncbi Campylobacter jejuni RM12214
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111684
CJAP155077 Cellvibrio japonicus4
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334064
CFET360106 ncbi Campylobacter fetus fetus 82-404
CCUR360105 ncbi Campylobacter curvus 525.924
CCON360104 ncbi Campylobacter concisus 138264
CCHL340177 ncbi Chlorobium chlorochromatii CaD34
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN4
CBLO203907 ncbi Candidatus Blochmannia floridanus4
CACE272562 ncbi Clostridium acetobutylicum ATCC 8243
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)4
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS423
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABUT367737 ncbi Arcobacter butzleri RM40184
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-13
AAUR290340 ncbi Arthrobacter aurescens TC14
AAEO224324 ncbi Aquifex aeolicus VF53


Names of the homologs of the genes in the group in each of these orgs
  G7590   G6106   EG12780   EG11736   
YPSE349747 YPSIP31758_0564YPSIP31758_3170YPSIP31758_0473YPSIP31758_1044
YPSE273123 YPTB3407YPTB0884YPTB3495YPTB2972
YPES386656 YPDSF_0438YPDSF_2871YPDSF_0347YPDSF_1637
YPES377628 YPN_0514YPN_0851YPN_3433YPN_2925
YPES360102 YPA_3136YPA_2734YPA_3752YPA_0551
YPES349746 YPANGOLA_A0292YPANGOLA_A3320YPANGOLA_A1122YPANGOLA_A3404
YPES214092 YPO0654YPO3243YPO3550YPO1074
YPES187410 Y3524Y0947Y0122Y3103
YENT393305 YE3673YE3223YE3729YE3252
WSUC273121 WS0680WS0681WS0681WS0678
VVUL216895 VV1_0613VV1_1897VV1_0591VV1_0291
VVUL196600 VV0582VV2518VV0602VV0893
VPAR223926 VP0424VP2288VP0447VP0708
VFIS312309 VF2234VF1931VF2213VF0687
VEIS391735 VEIS_0629VEIS_0629VEIS_2164
VCHO345073 VC0395_A2014VC0395_A1822VC0395_A0111VC0395_A0430
VCHO VC2230VC0579VC0908
TVOL273116 TVN1215TVN0956TVN0956TVN0598
TTEN273068 TTE0202TTE0762TTE0762
TROS309801 TRD_1544TRD_1865TRD_1865
TDEN326298 TMDEN_0580TMDEN_0573TMDEN_0573TMDEN_0574
TDEN292415 TBD_0962TBD_0107TBD_0107TBD_2346
TCRU317025 TCR_0505TCR_0506TCR_0506TCR_0356
TACI273075 TA1139TA0854TA0854TA0544
STYP99287 STM3200STM0310STM3266STM0248
STRO369723 STROP_3975STROP_1763STROP_1763STROP_1760
SSP94122 SHEWANA3_0849SHEWANA3_3882SHEWANA3_3882SHEWANA3_1583
SSP1148 SLL0083SLL0083SLL0084
SSON300269 SSO_3189SSO_0264SSO_3295SSO_0214
SSED425104 SSED_3812SSED_4253SSED_4253SSED_1783
SPRO399741 SPRO_4289SPRO_0950SPRO_4338SPRO_3752
SPEA398579 SPEA_0646SPEA_0250SPEA_0250SPEA_1712
SONE211586 SO_3745SO_0298SO_0298SO_2851
SLOI323850 SHEW_0659SHEW_0225SHEW_0225SHEW_2357
SHIGELLA S3298GMHAYRAOYAED
SHAL458817 SHAL_3550SHAL_4070SHAL_4070SHAL_2547
SGLO343509 SG0261SG0595SG0224SG1914
SFUM335543 SFUM_3634SFUM_3206SFUM_3206SFUM_0877
SFLE373384 SFV_3092SFV_0306SFV_3179SFV_0184
SFLE198214 AAN44569.1AAN41932.1AAN44657.1AAN41853.1
SERY405948 SACE_5569SACE_5570SACE_5570SACE_5574
SENT454169 SEHA_C3454SEHA_C0351SEHA_C3561SEHA_C0286
SENT321314 SCH_3147SCH_0311SCH_3207SCH_0247
SENT295319 SPA3068SPA2445SPA3135SPA0255
SENT220341 STY3379STY0355STY3449STY0275
SENT209261 T3120T2540T3186T0251
SDYS300267 SDY_3235SDY_0248SDY_3328SDY_0219
SDEN318161 SDEN_0709SDEN_0271SDEN_0271SDEN_1383
SCO SCO6187SCO6186SCO6186SCO6182
SBOY300268 SBO_2908SBO_0213SBO_3233SBO_0189
SBAL402882 SHEW185_0912SHEW185_4071SHEW185_4071SHEW185_2667
SBAL399599 SBAL195_0946SBAL195_4189SBAL195_4189SBAL195_2746
SARE391037 SARE_4360SARE_1749SARE_1749SARE_1746
RXYL266117 RXYL_0711RXYL_0712RXYL_0712RXYL_0716
RSP357808 ROSERS_3923ROSERS_2381ROSERS_2381ROSERS_4218
RRUB269796 RRU_A0123RRU_A2605RRU_A2605RRU_A3564
RPAL316058 RPB_1603RPB_1600RPB_1600RPB_1599
RPAL316057 RPD_1615RPD_1612RPD_1612RPD_1611
RPAL316055 RPE_1453RPE_1506RPE_1450
RPAL258594 RPA3984RPA3987RPA3987RPA3988
RMET266264 RMET_0727RMET_3429RMET_3429RMET_0445
RFER338969 RFER_1562RFER_3874RFER_3874RFER_3694
REUT381666 H16_A0803H16_A3578H16_A3578H16_A0520
REUT264198 REUT_A2564REUT_A3264REUT_A3264REUT_A0723
RCAS383372 RCAS_3222RCAS_3096RCAS_3096RCAS_0448
PTOR263820 PTO1010PTO0676PTO0676
PSYR223283 PSPTO_4983PSPTO_4421PSPTO_4421PSPTO_0186
PSYR205918 PSYR_0537PSYR_4115PSYR_4115PSYR_0010
PSTU379731 PST_3825PST_1069PST_1069PST_0008
PSP312153 PNUC_0504PNUC_0035PNUC_0035PNUC_1865
PSP296591 BPRO_1785BPRO_0392BPRO_0392BPRO_4201
PPUT76869 PPUTGB1_4983PPUTGB1_4525PPUTGB1_4525PPUTGB1_0075
PPUT351746 PPUT_4806PPUT_4401PPUT_4401PPUT_0075
PPUT160488 PP_4934PP_1323PP_1323PP_0059
PPRO298386 PBPRA0449PBPRA2913PBPRA3229PBPRA2939
PNAP365044 PNAP_2800PNAP_0272PNAP_0272PNAP_0446
PMUL272843 PM0884PM0122PM0648PM1727
PMEN399739 PMEN_0597PMEN_1230PMEN_0909PMEN_0012
PMAR74546 PMT9312_1347PMT9312_1347PMT9312_1335
PMAR167540 PMM1218PMM1217PMM1217PMM1214
PMAR167539 PRO_1322PRO_1321PRO_1321PRO_1318
PMAR146891 A9601_14421A9601_14411A9601_14411A9601_14391
PLUT319225 PLUT_0964PLUT_1990PLUT_1990PLUT_0221
PLUM243265 PLU3968PLU1193PLU4004PLU0698
PING357804 PING_3361PING_1335PING_1175PING_3285
PHAL326442 PSHAA2323PSHAA2324PSHAA2524PSHAA2317
PFLU220664 PFL_0530PFL_5074PFL_5074PFL_0012
PFLU216595 PFLU0482PFLU0933PFLU0933PFLU0009
PFLU205922 PFL_0484PFL_4686PFL_4686PFL_0008
PENT384676 PSEEN4986PSEEN4498PSEEN4498PSEEN0015
PCAR338963 PCAR_1282PCAR_1270PCAR_1270PCAR_1283
PATL342610 PATL_3695PATL_3695PATL_2883
PAER208964 PA4996PA4425PA4425PA0006
PAER208963 PA14_66060PA14_57500PA14_57500PA14_00070
OCAR504832 OCAR_5335OCAR_5332OCAR_5332OCAR_5331
NWIN323098 NWI_1071NWI_1068NWI_1068NWI_1067
NSP387092 NIS_1448NIS_1447NIS_1447NIS_1450
NOCE323261 NOC_2613NOC_0354NOC_0354NOC_0374
NMUL323848 NMUL_A1792NMUL_A1795NMUL_A1795NMUL_A1793
NMEN374833 NMCC_0786NMCC_2055NMCC_2055NMCC_0166
NMEN272831 NMC0769NMC2070NMC2070NMC2014
NMEN122587 NMA1034NMA0340NMA0340NMA0405
NMEN122586 NMB_0825NMB_2090NMB_2090NMB_2033
NHAM323097 NHAM_1299NHAM_1296NHAM_1296NHAM_1295
NGON242231 NGO0402NGO1986NGO1986NGO2070
NFAR247156 NFA24110NFA23930NFA23930NFA23940
NEUT335283 NEUT_0158NEUT_0158NEUT_0160
MTUB419947 MRA_0119MRA_0119MRA_0120
MTUB336982 TBFG_10114TBFG_10114TBFG_10115
MTBRV RV0113RV0113RV0114
MTBCDC MT0122MT0122MT0122
MSUC221988 MS1262MS0218MS1290MS0435
MSP400668 MMWYL1_3475MMWYL1_2396MMWYL1_2396MMWYL1_0011
MPET420662 MPE_A2248MPE_A3765MPE_A3765MPE_A3379
MMAG342108 AMB0778AMB0032AMB0032AMB0146
MLOT266835 MLL2562MLL2561MLL2561MLL2559
MFLA265072 MFLA_0769MFLA_0770MFLA_2284MFLA_0643
MCAP243233 MCA_1736MCA_0183MCA_0183MCA_2051
MBOV410289 BCG_0146BCG_0146BCG_0147
MBOV233413 MB0117MB0117MB0118
MAVI243243 MAV_4089MAV_1119MAV_1119MAV_1120
MAQU351348 MAQU_0786MAQU_0787MAQU_2465MAQU_0784
MAER449447 MAE_55680MAE_55680MAE_55690
MAEO419665 MAEO_0400MAEO_0402MAEO_0402MAEO_0399
LPNE400673 LPC_3308LPC_3308LPC_1283
LPNE297246 LPP3064LPP3064LPP1802
LPNE297245 LPL2921LPL2921LPL1803
LPNE272624 LPG2993LPG2993LPG1838
LLAC272622 LACR_2365LACR_2365LACR_2364
LINT363253 LI0816LI1010LI1010LIA009
LINT267671 LIC_11538LIC_11825LIC_11825
LINT189518 LA2411LA2092LA2092
LCHO395495 LCHO_1638LCHO_1638LCHO_0214
LBOR355277 LBJ_1453LBJ_1916LBJ_1916
LBOR355276 LBL_1677LBL_1368LBL_1368
LBIF456481 LEPBI_I1643LEPBI_I1621LEPBI_I1621
LBIF355278 LBF_1593LBF_1571LBF_1571
KPNE272620 GKPORF_B2789GKPORF_B4528GKPORF_B2890GKPORF_B4503
JSP375286 MMA_0205MMA_0205MMA_0424
JSP290400 JANN_4242JANN_4242JANN_4248
ILOI283942 IL0422IL0422IL1837
HSOM228400 HSM_0925HSM_0840HSM_1205HSM_0572
HSOM205914 HS_0576HS_1238HS_0738HS_1532
HPYL85963 JHP0792JHP0791JHP0791JHP0794
HPYL357544 HPAG1_0841HPAG1_0840HPAG1_0840HPAG1_0843
HPY HP0858HP0857HP0857HP0860
HMOD498761 HM1_1149HM1_1149HM1_1152
HINF71421 HI_1526HI_1181HI_1657HI_0621.1
HINF374930 CGSHIEE_05200CGSHIEE_06140CGSHIEE_03770CGSHIEE_02095
HINF281310 NTHI1607NTHI1350NTHI1959NTHI0880
HHEP235279 HH_1532HH_1531HH_1531HH_1534
HHAL349124 HHAL_2261HHAL_2104HHAL_2104HHAL_1222
HDUC233412 HD_1182HD_1228HD_0801HD_1666
HCHE349521 HCH_01059HCH_01840HCH_05896HCH_00020
HAUR316274 HAUR_1029HAUR_0237HAUR_0237HAUR_0238
HARS204773 HEAR0178HEAR0178HEAR0374
HACI382638 HAC_1221HAC_1220HAC_1220HAC_1223
GURA351605 GURA_3211GURA_2864GURA_2864GURA_2863
GSUL243231 GSU_2085GSU_2087GSU_2087GSU_2084
GMET269799 GMET_0922GMET_0920GMET_0920GMET_0923
GBET391165 GBCGDNIH1_0513GBCGDNIH1_1536GBCGDNIH1_1536
FPHI484022 FPHI_0725FPHI_0725FPHI_0066
FNUC190304 FN1786FN0502FN0502FN1461
FALN326424 FRAAL3935FRAAL3935FRAAL3935FRAAL3932
ESP42895 ENT638_3455ENT638_0759ENT638_3586ENT638_0738
EFER585054 EFER_2996EFER_0248EFER_4346EFER_0224
ECOO157 Z4405GMHAYRAOYAED
ECOL83334 ECS3935ECS0249ECS4030ECS0202
ECOL585397 ECED1_3720ECED1_0256ECED1_3809ECED1_0207
ECOL585057 ECIAI39_3548ECIAI39_0430ECIAI39_3646ECIAI39_0443
ECOL585056 ECUMN_3534ECUMN_0243ECUMN_3629ECUMN_0198
ECOL585055 EC55989_3466EC55989_0246EC55989_3569EC55989_0198
ECOL585035 ECS88_3449ECS88_0259ECS88_3533ECS88_0212
ECOL585034 ECIAI1_3199ECIAI1_0262ECIAI1_3299ECIAI1_0202
ECOL481805 ECOLC_0647ECOLC_3398ECOLC_0549ECOLC_3459
ECOL469008 ECBD_0689ECBD_3400ECBD_0591ECBD_3418
ECOL439855 ECSMS35_3344ECSMS35_0234ECSMS35_3444ECSMS35_0212
ECOL413997 ECB_02922ECB_00217ECB_03016ECB_00199
ECOL409438 ECSE_3332ECSE_0243ECSE_3435ECSE_0202
ECOL405955 APECO1_3362APECO1_1745APECO1_3281APECO1_1787
ECOL364106 UTI89_C3488UTI89_C0262UTI89_C3576UTI89_C0216
ECOL362663 ECP_3141ECP_0252ECP_3237ECP_0210
ECOL331111 ECE24377A_3515ECE24377A_0254ECE24377A_3631ECE24377A_0207
ECOL316407 ECK3042:JW3024:B3052ECK0223:JW0212:B0222ECK3137:JW3118:B3149ECK0200:JW0196:B0200
ECOL199310 C3800C0372C3903C0241
ECAR218491 ECA3584ECA3473ECA0320ECA3523
DVUL882 DVU_3361DVU_1889DVU_1889DVU_1054
DSP216389 DEHABAV1_0146DEHABAV1_0146DEHABAV1_0151
DNOD246195 DNO_0095DNO_0290DNO_0290DNO_1059
DETH243164 DET_0207DET_0207DET_0202
DDES207559 DDE_0028DDE_2619DDE_2619DDE_1481
DARO159087 DARO_1285DARO_0501DARO_0501DARO_3536
CVIO243365 CV_3040CV_0357CV_0655CV_1657
CTEP194439 CT_1168CT_2038CT_2038CT_2011
CSAL290398 CSAL_0017CSAL_2202CSAL_2202CSAL_0005
CPSY167879 CPS_4434CPS_4434CPS_3892
CPRO264201 PC1587PC1787PC1787
CPEL335992 SAR11_0539SAR11_0545SAR11_0545SAR11_0546
CMIC443906 CMM_2702CMM_2685CMM_2685CMM_2683
CMIC31964 CMS2661CMS2660CMS2660CMS2658
CJEJ407148 C8J_1096C8J_1095C8J_1095C8J_1098
CJEJ360109 JJD26997_0578JJD26997_0579JJD26997_1756JJD26997_0576
CJEJ354242 CJJ81176_1167CJJ81176_1166CJJ81176_1423CJJ81176_1169
CJEJ195099 CJE_1286CJE_1285CJE_1609CJE_1288
CJEJ192222 CJ1150CCJ1149CCJ1424CCJ1152C
CJAP155077 CJA_0509CJA_0925CJA_0925CJA_0055
CHUT269798 CHU_0783CHU_0355CHU_0355CHU_1575
CFET360106 CFF8240_1413CFF8240_1410CFF8240_1410CFF8240_1415
CCUR360105 CCV52592_0244CCV52592_0245CCV52592_0245CCV52592_0242
CCON360104 CCC13826_0577CCC13826_0578CCC13826_0578CCC13826_0575
CCHL340177 CAG_0806CAG_0131CAG_0131CAG_1807
CBUR434922 COXBU7E912_0342COXBU7E912_0258COXBU7E912_0258COXBU7E912_2094
CBUR360115 COXBURSA331_A1838COXBURSA331_A1935COXBURSA331_A1935COXBURSA331_A0092
CBUR227377 CBU_1655CBU_1743CBU_1743CBU_1996
CBLO291272 BPEN_065BPEN_233BPEN_233BPEN_298
CBLO203907 BFL063BFL226BFL226BFL465
CACE272562 CAC3054CAC3054CAC3053
BVIE269482 BCEP1808_0973BCEP1808_0249BCEP1808_0249BCEP1808_2804
BTHE226186 BT_0475BT_0475BT_0477
BTHA271848 BTH_I1643BTH_I3147BTH_I3147BTH_I0583
BSP376 BRADO5201BRADO5204BRADO5204BRADO5205
BSP36773 BCEP18194_A4165BCEP18194_A3392BCEP18194_A3392BCEP18194_A6030
BSP107806 BU060BU250BU250BU102
BPSE320373 BURPS668_2877BURPS668_3242BURPS668_3818BURPS668_3240
BPSE320372 BURPS1710B_A3236BURPS1710B_A3564BURPS1710B_A0044BURPS1710B_A3562
BPSE272560 BPSL2510BPSL2795BPSL3273BPSL2793
BPET94624 BPET1894BPET0438BPET0438BPET2384
BPER257313 BP0954BP0388BP0388BP0035
BPAR257311 BPP3124BPP4043BPP4043BPP3656
BMAL320389 BMA10247_0207BMA10247_2173BMA10247_3177BMA10247_2171
BMAL320388 BMASAVP1_A2566BMASAVP1_A0533BMASAVP1_A0023BMASAVP1_A0535
BMAL243160 BMA_0422BMA_2295BMA_2800BMA_2293
BJAP224911 BLL5927BLL5420BLL5420BLR5988
BCEN331272 BCEN2424_1052BCEN2424_0291BCEN2424_0291BCEN2424_6444
BCEN331271 BCEN_0573BCEN_2815BCEN_2815BCEN_1385
BBRO257310 BB3463BB4516BB4516BB4091
BAPH198804 BUSG057BUSG241BUSG241BUSG095
BAMB398577 BAMMC406_0932BAMMC406_0217BAMMC406_0217BAMMC406_2620
BAMB339670 BAMB_0928BAMB_0203BAMB_0203BAMB_5652
ASP76114 EBA4001EBA1463EBA1463EBA6910
ASP62928 AZO3563AZO0870AZO0870AZO1807
ASP232721 AJS_0415AJS_0415AJS_0529
ASP1667 ARTH_0361ARTH_0356ARTH_0356ARTH_0352
ASAL382245 ASA_0522ASA_2783ASA_0341ASA_0294
APLE434271 APJL_0423APJL_0804APJL_1382APJL_0855
APLE416269 APL_0402APL_0798APL_1364APL_0845
AHYD196024 AHA_3767AHA_1574AHA_3897AHA_4017
AFER243159 AFE_1675AFE_2884AFE_2884AFE_0520
AEHR187272 MLG_2810MLG_2206MLG_2206MLG_0010
ACRY349163 ACRY_0354ACRY_2354ACRY_2354
ACAU438753 AZC_2254AZC_1526AZC_1526AZC_1830
ABUT367737 ABU_1797ABU_1798ABU_1798ABU_1795
ABOR393595 ABO_2290ABO_0584ABO_0584ABO_0007
ABAU360910 BAV1358BAV3163BAV3163BAV0707
ABAC204669 ACID345_3810ACID345_3790ACID345_3790ACID345_3809
AAVE397945 AAVE_0631AAVE_0631AAVE_4175
AAUR290340 AAUR_0119AAUR_0115AAUR_0115AAUR_0111
AAEO224324 AQ_565AQ_908AQ_908


Organism features enriched in list (features available for 249 out of the 258 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00006542392
Arrangment:Clusters 0.0008590117
Arrangment:Singles 0.0002665142286
Disease:Bubonic_plague 0.005861966
Disease:Dysentery 0.005861966
Disease:Gastroenteritis 0.00001311313
Endospores:No 0.000038668211
Endospores:Yes 1.212e-6753
GC_Content_Range4:0-40 2.719e-1350213
GC_Content_Range4:40-60 0.0000439118224
GC_Content_Range4:60-100 0.000090081145
GC_Content_Range7:0-30 0.0000763847
GC_Content_Range7:30-40 2.642e-842166
GC_Content_Range7:50-60 0.000015865107
GC_Content_Range7:60-70 0.000320774134
Genome_Size_Range5:0-2 8.791e-1035155
Genome_Size_Range5:2-4 0.000115764197
Genome_Size_Range5:4-6 2.309e-13119184
Genome_Size_Range5:6-10 0.00047373147
Genome_Size_Range9:0-1 0.0013200427
Genome_Size_Range9:1-2 5.420e-731128
Genome_Size_Range9:2-3 0.000257035120
Genome_Size_Range9:4-5 4.530e-76396
Genome_Size_Range9:5-6 9.840e-65688
Genome_Size_Range9:6-8 0.00018682738
Gram_Stain:Gram_Neg 1.017e-27205333
Gram_Stain:Gram_Pos 7.132e-1920150
Habitat:Multiple 0.006849688178
Motility:No 9.665e-740151
Motility:Yes 5.364e-9148267
Optimal_temp.:35-37 0.00001311313
Oxygen_Req:Anaerobic 5.441e-624102
Oxygen_Req:Facultative 0.0031861100201
Oxygen_Req:Microaerophilic 0.00037011518
Pathogenic_in:Animal 0.00382393866
Shape:Coccus 3.729e-71582
Shape:Irregular_coccus 0.0053426217
Shape:Rod 0.0002218168347
Shape:Sphere 0.0021309219
Shape:Spiral 0.00003312634
Temp._range:Hyperthermophilic 0.0003120223
Temp._range:Mesophilic 0.0017186215473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 327
Effective number of orgs (counting one per cluster within 468 clusters): 254

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN243275 ncbi Treponema denticola ATCC 354050
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16221
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola1
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACEL351607 ncbi Acidothermus cellulolyticus 11B0


Names of the homologs of the genes in the group in each of these orgs
  G7590   G6106   EG12780   EG11736   
ZMOB264203
XORY360094 XOOORF_2407
XORY342109 XOO2121
XORY291331 XOO2258
XFAS405440 XFASM12_1417
XFAS183190 PD_1265
XFAS160492 XF2217
XCAM487884 XCC-B100_2098
XCAM316273 XCAORF_2062
XCAM314565 XC_2378
XCAM190485 XCC1811
XAXO190486 XAC1831
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TTHE300852
TTHE262724
TSP28240 TRQ2_0301
TSP1755
TPSE340099
TPET390874 TPET_1789
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014 TK2274
TFUS269800 TFU_2196
TERY203124 TERY_3495
TDEN243275
SWOL335541
STOK273063
STHE322159
STHE299768
STHE292459 STH794
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP387093 SUN_1940
SSP321332
SSP321327
SSP292414
SSP1131
SSOL273057
SSAP342451 SSP2078
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC02874
SMED366394 SMED_3406
SMAR399550
SLAC55218
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084 SYC1764_C
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RMAS416276
RLEG216596
RFEL315456
RETL347834
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTHE370438
PSP56811
PSP117
PRUM264731 GFRORF0455
PPEN278197 PEPE_1699
PMOB403833
PMAR93060 P9215_14331
PMAR74547
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PISL384616
PINT246198
PHOR70601 PH0735
PGIN242619
PFUR186497 PF1116
PDIS435591 BDI_0969
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844 PAB1507
OTSU357244
OANT439375
NSP35761 NOCA_1691
NSP103690 ALL1784
NSEN222891
NPHA348780
NEUR228410 NE1185
NARO279238
MXAN246197 MXAN_4710
MVAN350058
MTHE349307 MTHE_0791
MTHE264732
MTHE187420
MSYN262723
MSTA339860
MSP409
MSP266779
MSP189918
MSP164757
MSP164756
MSED399549 MSED_1736
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0242
MMAR444158 MMARC6_1712
MMAR426368 MMARC7_0190
MMAR402880 MMARC5_0750
MMAR394221
MMAR368407
MMAR267377 MMP0943
MLEP272631
MLAB410358
MKAN190192 MK0578
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2404
MGIL350054
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MBUR259564
MBAR269797
MART243272
MACE188937
MABS561007
LXYL281090
LWEL386043
LSAK314315
LREU557436
LPLA220668 LP_3660
LMON265669
LMON169963
LMES203120
LLAC272623
LJOH257314
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344
LACI272621
KRAD266940
IHOS453591 IGNI_1040
HWAL362976
HSP64091 VNG2516C
HSAL478009 OE4535F
HMUK485914
HMAR272569
HBUT415426
GTHE420246 GTNG_3174
GKAU235909 GK3230
GFOR411154 GFO_1761
FSUC59374
FSP1855
FSP106370
FNOD381764
FMAG334413
FJOH376686 FJOH_2875
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_2961
ECHA205920
ECAN269484
DSP255470
DSHI398580
DRED349161 DRED_2526
DRAD243230
DPSY177439
DOLE96561 DOLE_2674
DHAF138119
DGEO319795 DGEO_0358
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP501479
CRUT413404
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_1433
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMET456442
CMAQ397948 CMAQ_1245
CKOR374847
CKLU431943
CJEI306537
CHYD246194
CHOM360107
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCAV227941
CBOT536232
CBOT515621
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBEI290402
CABO218497
BXEN266265
BTUR314724
BTRI382640
BSUI470137
BSUI204722
BSUB
BQUI283165
BPUM315750 BPUM_3264
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405 BF3187
BFRA272559 BF3027
BCIC186490 BCI_0402
BCAN483179
BBUR224326
BBAC360095
BAPH372461 BCC_066
BANT592021 BAA_0749
BANT568206 BAMEG_3921
BANT261594 GBAA0665
BANT260799 BAS0632
BAMY326423 RBAM_033090
BAFZ390236
BABO262698
AYEL322098
AVAR240292 AVA_0252
AURANTIMONAS
ASP62977
APHA212042
APER272557
AORE350688
ANAE240017 ANA_1877
AMET293826 AMET_1184
AMAR329726 AM1_F0017
AMAR234826
ALAI441768
AFUL224325 AF_1418
ADEH290397 ADEH_2611
ACEL351607


Organism features enriched in list (features available for 300 out of the 327 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00006286492
Arrangment:Clusters 0.00016801617
Arrangment:Singles 0.0018281131286
Disease:Pharyngitis 0.004695688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00061181111
Disease:Wide_range_of_infections 0.00061181111
Disease:bronchitis_and_pneumonitis 0.004695688
Endospores:No 3.818e-7137211
Endospores:Yes 0.00480013653
GC_Content_Range4:0-40 1.577e-10146213
GC_Content_Range4:40-60 0.000903198224
GC_Content_Range4:60-100 0.000064555145
GC_Content_Range7:0-30 0.00001133847
GC_Content_Range7:30-40 0.0000127108166
GC_Content_Range7:50-60 0.000047137107
GC_Content_Range7:60-70 0.000150651134
Genome_Size_Range5:0-2 1.656e-10113155
Genome_Size_Range5:2-4 0.0000261124197
Genome_Size_Range5:4-6 1.287e-1649184
Genome_Size_Range5:6-10 0.00096921447
Genome_Size_Range9:0-1 0.00017092327
Genome_Size_Range9:1-2 5.511e-790128
Genome_Size_Range9:2-3 0.000013382120
Genome_Size_Range9:4-5 8.249e-72896
Genome_Size_Range9:5-6 8.091e-92188
Genome_Size_Range9:6-8 0.00074141038
Gram_Stain:Gram_Neg 4.840e-24112333
Gram_Stain:Gram_Pos 4.485e-14116150
Habitat:Host-associated 0.0036498120206
Habitat:Multiple 0.000836375178
Motility:No 4.122e-6101151
Motility:Yes 6.489e-10101267
Optimal_temp.:- 0.0058027119257
Optimal_temp.:30 0.0099453315
Optimal_temp.:30-37 4.959e-61818
Oxygen_Req:Aerobic 0.000657778185
Oxygen_Req:Anaerobic 3.649e-775102
Oxygen_Req:Microaerophilic 0.0019259318
Pathogenic_in:Animal 0.00171162366
Pathogenic_in:No 0.0093816128226
Shape:Coccus 8.398e-106782
Shape:Irregular_coccus 0.00653291417
Shape:Rod 2.441e-7149347
Shape:Sphere 0.00042321719
Shape:Spiral 0.0004577834
Temp._range:Hyperthermophilic 0.00027592023
Temp._range:Mesophilic 0.0004004228473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TVOL273116 ncbi Thermoplasma volcanium GSS1 0.00651723054
TACI273075 ncbi Thermoplasma acidophilum DSM 1728 0.00905423314


Names of the homologs of the genes in the group in each of these orgs
  G7590   G6106   EG12780   EG11736   
TVOL273116 TVN1215TVN0956TVN0956TVN0598
TACI273075 TA1139TA0854TA0854TA0544


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Habitat:Specialized 0.0081225253
Optimal_temp.:59 0.003430511
Shape:Pleomorphic 0.000165028
Temp._range:Thermophilic 0.0035072235



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181980.7360
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761590.6233
PWY-1269 (CMP-KDO biosynthesis I)3252140.5180
GLYCOCAT-PWY (glycogen degradation I)2461780.5075
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482210.5046
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002010.5006
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911480.4870
PWY-5913 (TCA cycle variation IV)3011960.4653
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901900.4567
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222400.4548
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911900.4539
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961920.4530
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251580.4398
AST-PWY (arginine degradation II (AST pathway))1201020.4322
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951420.4304
PWY-4041 (γ-glutamyl cycle)2791800.4224
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982270.4218
PWY-5938 ((R)-acetoin biosynthesis I)3762190.4216
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652140.4158
PWY-6389 ((S)-acetoin biosynthesis)3682150.4149
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561190.4091
DAPLYSINESYN-PWY (lysine biosynthesis I)3422040.4084
REDCITCYC (TCA cycle variation II)1741280.4063
PWY-5340 (sulfate activation for sulfonation)3852200.4062
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291980.4031
P344-PWY (acrylonitrile degradation)2101450.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6106   EG12780   EG11736   
G75900.9989930.9990590.998914
G61060.9999350.999445
EG127800.99922
EG11736



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PAIRWISE BLAST SCORES:

  G7590   G6106   EG12780   EG11736   
G75900.0f0---
G6106-0.0f01.2e-29-
EG12780-1.2e-290.0f0-
EG11736---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.750, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9992 0.9989 G7590 (rfaE) G7590-MONOMER (fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase)
   *in cand* 0.9994 0.9989 EG11736 (gmhB) EG11736-MONOMER (D,D-heptose 1,7-bisphosphate phosphatase)
             0.9980 0.9968 EG10838 (rfaD) EG10838-MONOMER (ADP-L-glycero-D-mannoheptose-6-epimerase)
   *in cand* 0.9996 0.9990 G6106 (lpcA) G6106-MONOMER (D-sedoheptulose 7-phosphate isomerase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9991 EG12780 (diaA) YRAO-MONOMER (DnaA initiator-associating factor for replication initiation)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7590 (centered at G7590)
G6106 (centered at G6106)
EG12780 (centered at EG12780)
EG11736 (centered at EG11736)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7590   G6106   EG12780   EG11736   
294/623275/623272/623295/623
AAEO224324:0:Tyes0230230-
AAUR290340:2:Tyes8440
AAVE397945:0:Tyes-003481
ABAC204669:0:Tyes200019
ABAU360910:0:Tyes653246424640
ABOR393595:0:Tyes23245885880
ABUT367737:0:Tyes2330
ACAU438753:0:Tyes73900311
ACRY349163:8:Tyes020102010-
ADEH290397:0:Tyes0---
AEHR187272:0:Tyes2781217921790
AFER243159:0:Tyes1132232923290
AFUL224325:0:Tyes0---
AHYD196024:0:Tyes2106022272336
AMAR329726:3:Tyes---0
AMET293826:0:Tyes---0
ANAE240017:0:Tyes0---
APLE416269:0:Tyes0394970443
APLE434271:0:Tno0358953409
ASAL382245:5:Tyes2212399460
ASP1667:3:Tyes9440
ASP232721:2:Tyes-00112
ASP62928:0:Tyes274200966
ASP76114:2:Tyes1479003181
AVAR240292:3:Tyes0---
BAMB339670:1:Tno---0
BAMB339670:3:Tno75400-
BAMB398577:3:Tno730002444
BAMY326423:0:Tyes0---
BANT260799:0:Tno0---
BANT261594:2:Tno0---
BANT568206:2:Tyes0---
BANT592021:2:Tno0---
BAPH198804:0:Tyes018218241
BAPH372461:0:Tyes---0
BBAC264462:0:Tyes0--2063
BBRO257310:0:Tyes010711071636
BCEN331271:2:Tno022712271826
BCEN331272:1:Tyes---0
BCEN331272:3:Tyes76000-
BCER226900:1:Tyes0--1497
BCER288681:0:Tno0--1444
BCER315749:1:Tyes0--1032
BCER405917:1:Tyes0--1441
BCER572264:1:Tno0--1563
BCIC186490:0:Tyes---0
BCLA66692:0:Tyes1606--0
BFRA272559:1:Tyes---0
BFRA295405:0:Tno---0
BJAP224911:0:Fyes51400575
BMAL243160:1:Tno0164821111646
BMAL320388:1:Tno24905040506
BMAL320389:1:Tyes0192029071918
BPAR257311:0:Tno0905905522
BPER257313:0:Tyes8153123120
BPET94624:0:Tyes1470001960
BPSE272560:1:Tyes0293773291
BPSE320372:1:Tno3070339003388
BPSE320373:1:Tno0348906346
BPUM315750:0:Tyes0---
BSP107806:2:Tyes018518541
BSP36773:2:Tyes792002692
BSP376:0:Tyes0334
BTHA271848:1:Tno1042250325030
BTHE226186:0:Tyes-002
BTHU281309:1:Tno0--1417
BTHU412694:1:Tno0--1328
BVIE269482:7:Tyes719002530
BWEI315730:4:Tyes0--1458
CACE272562:1:Tyes-110
CAULO:0:Tyes25--0
CBLO203907:0:Tyes0160160397
CBLO291272:0:Tno0163163228
CBOT508765:1:Tyes-00-
CBUR227377:1:Tyes08686333
CBUR360115:1:Tno1644173917390
CBUR434922:2:Tno84001756
CCHL340177:0:Tyes678001687
CCON360104:2:Tyes1003
CCUR360105:0:Tyes1003
CFET360106:0:Tyes2004
CHUT269798:0:Tyes425001201
CJAP155077:0:Tyes4538428420
CJEJ192222:0:Tyes102743
CJEJ195099:0:Tno103173
CJEJ354242:2:Tyes102503
CJEJ360109:0:Tyes2311050
CJEJ407148:0:Tno1003
CMAQ397948:0:Tyes0---
CMIC31964:2:Tyes3220
CMIC443906:2:Tyes19220
CPEL335992:0:Tyes0667
CPHY357809:0:Tyes---0
CPRO264201:0:Fyes0204204-
CPSY167879:0:Tyes-5285280
CSAL290398:0:Tyes12224722470
CSP78:2:Tyes13--0
CTEP194439:0:Tyes0858858832
CVIO243365:0:Tyes274803091350
DARO159087:0:Tyes798003059
DDES207559:0:Tyes0263326331473
DETH243164:0:Tyes-550
DGEO319795:1:Tyes0---
DNOD246195:0:Tyes0189189933
DOLE96561:0:Tyes---0
DRED349161:0:Tyes0---
DSP216389:0:Tyes-005
DVUL882:1:Tyes22948318310
ECAR218491:0:Tyes3301318603240
ECOL199310:0:Tno348112035800
ECOL316407:0:Tno28472029420
ECOL331111:6:Tno31663932790
ECOL362663:0:Tno29274130230
ECOL364106:1:Tno32654333530
ECOL405955:2:Tyes29414130210
ECOL409438:6:Tyes31914832950
ECOL413997:0:Tno27392528340
ECOL439855:4:Tno30271331260
ECOL469008:0:Tno98279402819
ECOL481805:0:Tno98285602919
ECOL585034:0:Tno29615430640
ECOL585035:0:Tno31244532100
ECOL585055:0:Tno32324933350
ECOL585056:2:Tno33404734360
ECOL585057:0:Tno31360323620
ECOL585397:0:Tno34074834950
ECOL83334:0:Tno38225439190
ECOLI:0:Tno29152430090
ECOO157:0:Tno38305239310
EFAE226185:3:Tyes0---
EFER585054:1:Tyes27562040720
ESP42895:1:Tyes27432428740
FALN326424:0:Tyes3330
FJOH376686:0:Tyes---0
FNUC190304:0:Tyes08458451804
FPHI484022:1:Tyes-6746740
FRANT:0:Tno-00-
FTUL351581:0:Tno-00-
FTUL393011:0:Tno-00-
FTUL393115:0:Tyes-00-
FTUL401614:0:Tyes-00-
FTUL418136:0:Tno-00-
FTUL458234:0:Tno-00-
GBET391165:0:Tyes010231023-
GFOR411154:0:Tyes---0
GKAU235909:1:Tyes0---
GMET269799:1:Tyes2003
GOXY290633:5:Tyes0--578
GSUL243231:0:Tyes1330
GTHE420246:1:Tyes0---
GURA351605:0:Tyes337110
GVIO251221:0:Tyes1887--0
HACI382638:1:Tyes1003
HARS204773:0:Tyes-00181
HAUR316274:2:Tyes803001
HCHE349521:0:Tyes997174556560
HDUC233412:0:Tyes3383720751
HHAL349124:0:Tyes10438848840
HHEP235279:0:Tyes1003
HINF281310:0:Tyes6454119500
HINF374930:0:Tyes5336872840
HINF71421:0:Tno89054910170
HMOD498761:0:Tyes-330
HNEP81032:0:Tyes1289--0
HPY:0:Tno1003
HPYL357544:1:Tyes1003
HPYL85963:0:Tno1003
HSAL478009:4:Tyes0---
HSOM205914:1:Tyes0662160949
HSOM228400:0:Tno3612666400
HSP64091:2:Tno0---
IHOS453591:0:Tyes0---
ILOI283942:0:Tyes-001447
JSP290400:0:Tyes-006
JSP375286:0:Tyes-00226
KPNE272620:2:Tyes016851001667
LBIF355278:2:Tyes2200-
LBIF456481:2:Tno2200-
LBOR355276:1:Tyes27200-
LBOR355277:1:Tno0415415-
LCAS321967:1:Tyes0--2399
LCHO395495:0:Tyes-143414340
LINT189518:1:Tyes32000-
LINT267671:1:Tno0280280-
LINT363253:0:Tyes---0
LINT363253:3:Tyes0194194-
LLAC272622:5:Tyes-110
LPLA220668:0:Tyes0---
LPNE272624:0:Tno-114811480
LPNE297245:1:Fno-113211320
LPNE297246:1:Fyes-127312730
LPNE400673:0:Tno-198919890
LSPH444177:1:Tyes2713--0
MAEO419665:0:Tyes1330
MAER449447:0:Tyes-001
MAQU351348:2:Tyes2316590
MAVI243243:0:Tyes2934001
MBOV233413:0:Tno-001
MBOV410289:0:Tno-001
MCAP243233:0:Tyes1457001764
MFLA265072:0:Tyes12412516380
MHUN323259:0:Tyes0---
MJAN243232:2:Tyes1192--0
MKAN190192:0:Tyes0---
MLOT266835:2:Tyes2110
MMAG342108:0:Tyes74600114
MMAR267377:0:Tyes0---
MMAR402880:1:Tyes0---
MMAR426368:0:Tyes0---
MMAR444158:0:Tyes0---
MMAZ192952:0:Tyes0---
MPET420662:1:Tyes0151615161130
MSED399549:0:Tyes0---
MSME246196:0:Tyes-00-
MSP400668:0:Tyes3493240724070
MSUC221988:0:Tyes108001109222
MTBCDC:0:Tno-000
MTBRV:0:Tno-001
MTHE349307:0:Tyes0---
MTUB336982:0:Tno-001
MTUB419947:0:Tyes-001
MXAN246197:0:Tyes0---
NEUR228410:0:Tyes---0
NEUT335283:2:Tyes-002
NFAR247156:2:Tyes18001
NGON242231:0:Tyes0144814481525
NHAM323097:2:Tyes4110
NMEN122586:0:Tno0121012101156
NMEN122587:0:Tyes6570066
NMEN272831:0:Tno0112111211068
NMEN374833:0:Tno610186518650
NMUL323848:3:Tyes0331
NOCE323261:1:Tyes22240020
NSP103690:6:Tyes0---
NSP35761:1:Tyes0---
NSP387092:0:Tyes1003
NWIN323098:0:Tyes4110
OCAR504832:0:Tyes4110
OIHE221109:0:Tyes1312--0
PABY272844:0:Tyes0---
PAER208963:0:Tyes5369465846580
PAER208964:0:Tno5054446944690
PATL342610:0:Tyes-8288280
PCAR338963:0:Tyes120013
PDIS435591:0:Tyes---0
PENT384676:0:Tyes4663421042100
PFLU205922:0:Tyes481473447340
PFLU216595:1:Tyes4518898890
PFLU220664:0:Tyes509498149810
PFUR186497:0:Tyes0---
PHAL326442:1:Tyes672010
PHOR70601:0:Tyes0---
PING357804:0:Tyes203614901961
PLUM243265:0:Fyes331950133560
PLUT319225:0:Tyes717172317230
PMAR146891:0:Tyes3220
PMAR167539:0:Tyes4330
PMAR167540:0:Tyes4330
PMAR74546:0:Tyes-14140
PMAR93060:0:Tyes---0
PMEN399739:0:Tyes57912258960
PMUL272843:1:Tyes76205261605
PNAP365044:8:Tyes254300177
PPEN278197:0:Tyes0---
PPRO298386:2:Tyes0245627712482
PPUT160488:0:Tno4857125612560
PPUT351746:0:Tyes4773436143610
PPUT76869:0:Tno4973451045100
PRUM264731:0:Tyes---0
PSP296591:2:Tyes1381003779
PSP312153:0:Tyes479001859
PSTU379731:0:Tyes3800106110610
PSYR205918:0:Tyes524411441140
PSYR223283:2:Tyes4738418441840
PTOR263820:0:Tyes34900-
RCAS383372:0:Tyes2731260326030
REUT264198:3:Tyes1857256825680
REUT381666:2:Tyes280296629660
RFER338969:1:Tyes0231223122132
RMET266264:2:Tyes282297029700
RPAL258594:0:Tyes0334
RPAL316055:0:Tyes356-0
RPAL316056:0:Tyes3--0
RPAL316057:0:Tyes4110
RPAL316058:0:Tyes4110
RRUB269796:1:Tyes0247424743430
RSOL267608:1:Tyes396--0
RSP101510:3:Fyes-00-
RSP357808:0:Tyes1531001819
RXYL266117:0:Tyes0115
SACI56780:0:Tyes-00-
SALA317655:0:Fyes-00-
SARE391037:0:Tyes2533330
SBAL399599:3:Tyes0333033301846
SBAL402882:1:Tno0322732271788
SBOY300268:1:Tyes25622028720
SCO:2:Fyes5440
SDEG203122:0:Tyes-00-
SDEN318161:0:Tyes440001129
SDYS300267:1:Tyes28482529280
SELO269084:0:Tyes0---
SENT209261:0:Tno2731217427940
SENT220341:0:Tno27877128480
SENT295319:0:Tno2700210027640
SENT321314:2:Tno29536830140
SENT454169:2:Tno30525931570
SERY405948:0:Tyes0115
SFLE198214:0:Tyes27958728850
SFLE373384:0:Tno275411728340
SFUM335543:0:Tyes2730230523050
SGLO343509:3:Tyes3838401733
SHAL458817:0:Tyes1013154415440
SHIGELLA:0:Tno27269128170
SLOI323850:0:Tyes444002198
SMED366394:3:Tyes-0--
SMEL266834:2:Tyes-0--
SONE211586:1:Tyes3393002514
SPEA398579:0:Tno412001519
SPRO399741:1:Tyes3377034282837
SSAP342451:2:Tyes0---
SSED425104:0:Tyes2113256025600
SSON300269:1:Tyes28304729300
SSP1148:0:Tyes-110
SSP387093:0:Tyes---0
SSP94122:1:Tyes031133113768
STHE292459:0:Tyes0---
STRO369723:0:Tyes2204330
STYP99287:1:Tyes29306329960
TACI273075:0:Tyes5973043040
TCRU317025:0:Tyes1511521520
TDEN292415:0:Tyes874002281
TDEN326298:0:Tyes7001
TELO197221:0:Tyes0--368
TERY203124:0:Tyes0---
TFUS269800:0:Tyes0---
TKOD69014:0:Tyes0---
TPET390874:0:Tno0---
TROS309801:1:Tyes0318318-
TSP28240:0:Tyes0---
TTEN273068:0:Tyes0531531-
TTUR377629:0:Tyes-00-
TVOL273116:0:Tyes6273573570
VCHO:0:Tyes-16660330
VCHO345073:1:Tno186216700309
VEIS391735:1:Tyes-001521
VFIS312309:2:Tyes1595128415740
VPAR223926:1:Tyes0190923291
VVUL196600:2:Tyes0197620321
VVUL216895:1:Tno30615412860
WSUC273121:0:Tyes2330
XAUT78245:1:Tyes1824--0
XAXO190486:0:Tyes---0
XCAM190485:0:Tyes---0
XCAM314565:0:Tno---0
XCAM316273:0:Tno---0
XCAM487884:0:Tno---0
XFAS160492:2:Tno---0
XFAS183190:1:Tyes---0
XFAS405440:0:Tno---0
XORY291331:0:Tno---0
XORY342109:0:Tyes---0
XORY360094:0:Tno---0
YENT393305:1:Tyes448050632
YPES187410:5:Tno344085003016
YPES214092:3:Tno024692773401
YPES349746:2:Tno029377923016
YPES360102:3:Tyes2624221732520
YPES377628:2:Tno034629772456
YPES386656:2:Tno89252201284
YPSE273123:2:Tno2530026142105
YPSE349747:2:Tno9126680564



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