CANDIDATE ID: 847

CANDIDATE ID: 847

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9925633e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11737 (metI) (b0198)
   Products of gene:
     - METI-MONOMER (MetI)
     - METNIQ-METHIONINE-ABC-CPLX (L- and D-methionine uptake ABC permease)
       Reactions:
        ATP + L-methionine[periplasmic space] + H2O  ->  phosphate + ADP + L-methionine[cytosol]
        ATP + D-methionine[periplasmic space] + H2O  ->  phosphate + ADP + D-methionine[cytosol]

- EG11736 (gmhB) (b0200)
   Products of gene:
     - EG11736-MONOMER (D,D-heptose 1,7-bisphosphate phosphatase)
       Reactions:
        D-glycero-beta-D-manno-heptose 1,7-diphosphate + H2O  ->  D-glycero-beta-D-manno-heptose 1-phosphate + phosphate
         In pathways
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)

- EG11621 (metN) (b0199)
   Products of gene:
     - ABC-MONOMER (MetN)
     - METNIQ-METHIONINE-ABC-CPLX (L- and D-methionine uptake ABC permease)
       Reactions:
        ATP + L-methionine[periplasmic space] + H2O  ->  phosphate + ADP + L-methionine[cytosol]
        ATP + D-methionine[periplasmic space] + H2O  ->  phosphate + ADP + D-methionine[cytosol]

- EG11504 (metQ) (b0197)
   Products of gene:
     - METQ-MONOMER (MetQ)
     - METNIQ-METHIONINE-ABC-CPLX (L- and D-methionine uptake ABC permease)
       Reactions:
        ATP + L-methionine[periplasmic space] + H2O  ->  phosphate + ADP + L-methionine[cytosol]
        ATP + D-methionine[periplasmic space] + H2O  ->  phosphate + ADP + D-methionine[cytosol]



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 241
Effective number of orgs (counting one per cluster within 468 clusters): 145

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
WSUC273121 ncbi Wolinella succinogenes DSM 17403
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TSP1755 Thermoanaerobacter sp.3
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332233
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP644076 Silicibacter sp. TrichCH4B3
SSON300269 ncbi Shigella sonnei Ss0464
SPRO399741 ncbi Serratia proteamaculans 5684
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14353
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SAVE227882 ncbi Streptomyces avermitilis MA-46803
SAUR93062 ncbi Staphylococcus aureus aureus COL3
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83253
SAUR426430 ncbi Staphylococcus aureus aureus Newman3
SAUR418127 ncbi Staphylococcus aureus aureus Mu33
SAUR367830 Staphylococcus aureus aureus USA3003
SAUR359787 ncbi Staphylococcus aureus aureus JH13
SAUR359786 ncbi Staphylococcus aureus aureus JH93
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4763
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2523
SAUR273036 ncbi Staphylococcus aureus RF1223
SAUR196620 ncbi Staphylococcus aureus aureus MW23
SAUR158879 ncbi Staphylococcus aureus aureus N3153
SAUR158878 ncbi Staphylococcus aureus aureus Mu503
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMOB403833 ncbi Petrotoga mobilis SJ953
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MAQU351348 ncbi Marinobacter aquaeolei VT84
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53343
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LMON265669 ncbi Listeria monocytogenes 4b F23653
LMON169963 ncbi Listeria monocytogenes EGD-e3
LINN272626 ncbi Listeria innocua Clip112623
LCAS321967 ncbi Lactobacillus casei ATCC 3344
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HPYL85963 ncbi Helicobacter pylori J994
HPYL357544 ncbi Helicobacter pylori HPAG14
HPY ncbi Helicobacter pylori 266954
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHEP235279 ncbi Helicobacter hepaticus ATCC 514494
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HACI382638 ncbi Helicobacter acinonychis Sheeba4
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-23
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255864
FMAG334413 ncbi Finegoldia magna ATCC 293283
FJOH376686 ncbi Flavobacterium johnsoniae UW1014
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5833
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DHAF138119 ncbi Desulfitobacterium hafniense Y513
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE453
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CNOV386415 ncbi Clostridium novyi NT3
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3823
CMIC31964 ncbi Clavibacter michiganensis sepedonicus3
CKLU431943 ncbi Clostridium kluyveri DSM 5553
CJEJ407148 ncbi Campylobacter jejuni jejuni 811163
CJEJ360109 ncbi Campylobacter jejuni doylei 269.973
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1763
CJEJ195099 ncbi Campylobacter jejuni RM12213
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111683
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CFET360106 ncbi Campylobacter fetus fetus 82-403
CDIF272563 ncbi Clostridium difficile 6303
CCUR360105 ncbi Campylobacter curvus 525.923
CCON360104 ncbi Campylobacter concisus 138263
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
CAULO ncbi Caulobacter crescentus CB154
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BXEN266265 ncbi Burkholderia xenovorans LB4003
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054763
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHEN283166 ncbi Bartonella henselae Houston-13
BCLA66692 ncbi Bacillus clausii KSM-K163
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5833
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP232721 ncbi Acidovorax sp. JS424
ASP1667 Arthrobacter sp.3
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs3
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG11737   EG11736   EG11621   EG11504   
YPSE349747 YPSIP31758_1042YPSIP31758_1044YPSIP31758_1043YPSIP31758_1041
YPSE273123 YPTB2974YPTB2972YPTB2973YPTB2975
YPES386656 YPDSF_1639YPDSF_1637YPDSF_1638YPDSF_1640
YPES377628 YPN_2927YPN_2925YPN_2926YPN_2928
YPES360102 YPA_0549YPA_0551YPA_0550YPA_0548
YPES349746 YPANGOLA_A3406YPANGOLA_A3404YPANGOLA_A3405YPANGOLA_A3407
YPES214092 YPO1072YPO1074YPO1073YPO1071
YPES187410 Y3105Y3103Y3104Y3106
YENT393305 YE3254YE3252YE3253YE3255
XORY360094 XOOORF_4699XOOORF_2407XOOORF_4700XOOORF_4698
XORY342109 XOO0650XOO2121XOO0649XOO0651
XORY291331 XOO0714XOO2258XOO0713XOO0715
XFAS405440 XFASM12_1975XFASM12_1417XFASM12_1974XFASM12_1976
XFAS183190 PD_1805PD_1265PD_1804PD_1806
XFAS160492 XF0874XF2217XF0875XF0873
XCAM487884 XCC-B100_3814XCC-B100_2098XCC-B100_3815XCC-B100_3813
XCAM316273 XCAORF_0686XCAORF_2062XCAORF_0685XCAORF_0687
XCAM314565 XC_3700XC_2378XC_3701XC_3699
XCAM190485 XCC3629XCC1811XCC3630XCC3628
XAXO190486 XAC3668XAC1831XAC3669XAC3667
XAUT78245 XAUT_1144XAUT_1953XAUT_1145XAUT_1143
WSUC273121 WS1944WS0678WS1945
VVUL216895 VV1_0293VV1_0291VV1_0292VV1_0294
VVUL196600 VV0891VV0893VV0892VV0890
VPAR223926 VP0705VP0708VP0706VP0704
VFIS312309 VF0685VF0687VF0686VF0684
VCHO345073 VC0395_A0428VC0395_A0430VC0395_A0429VC0395_A0427
VCHO VC0906VC0908VC0907VC0905
TSP1755 TETH514_1770TETH514_1769TETH514_1771
TPSE340099 TETH39_1333TETH39_1332TETH39_1334
STYP99287 STM0246STM0248STM0247STM0245
SSP644076 SCH4B_1156SCH4B_1155SCH4B_1157
SSON300269 SSO_0212SSO_0214SSO_0213SSO_0211
SPRO399741 SPRO_3754SPRO_3752SPRO_3753SPRO_3755
SMEL266834 SMC03158SMC03159SMC03157
SMED366394 SMED_2784SMED_2785SMED_2783
SHIGELLA YAEEYAEDABCYAEC
SHAE279808 SH2046SH2047SH0458
SGLO343509 SG1916SG1914SG1915SG1917
SFLE373384 SFV_0182SFV_0184SFV_0183SFV_0181
SFLE198214 AAN41851.1AAN41853.1AAN41852.1AAN41850.1
SENT454169 SEHA_C0284SEHA_C0286SEHA_C0285SEHA_C0283
SENT321314 SCH_0245SCH_0247SCH_0246SCH_0244
SENT295319 SPA0253SPA0255SPA0254SPA0252
SENT220341 STY0273STY0275STY0274STY0272
SENT209261 T0249T0251T0250T0248
SDYS300267 SDY_0217SDY_0219SDY_0218SDY_0216
SCO SCO1558SCO6182SCO1559SCO1557
SBOY300268 SBO_0187SBO_0189SBO_0188SBO_0186
SAVE227882 SAV6790SAV6789SAV6792
SAUR93062 SACOL0505SACOL0504SACOL0884
SAUR93061 SAOUHSC_00424SAOUHSC_00423SAOUHSC_00844
SAUR426430 NWMN_0427NWMN_0780NWMN_0782
SAUR418127 SAHV_0460SAHV_0459SAHV_0835
SAUR367830 SAUSA300_0436SAUSA300_0435SAUSA300_0798
SAUR359787 SAURJH1_0497SAURJH1_0496SAURJH1_0856
SAUR359786 SAURJH9_0484SAURJH9_0483SAURJH9_0840
SAUR282459 SAS0420SAS0419SAS0781
SAUR282458 SAR0462SAR0461SAR0872
SAUR273036 SAB0412SAB0411SAB0770
SAUR196620 MW0417MW0416MW0792
SAUR158879 SA0421SA0420SA0771
SAUR158878 SAV0463SAV0462SAV0839
RSPH349102 RSPH17025_4332RSPH17025_4331RSPH17025_4333
RSPH349101 RSPH17029_1767RSPH17029_1766RSPH17029_1768
RSPH272943 RSP_0130RSP_0129RSP_0132
RSOL267608 RSC0921RSC0523RSC0920RSC3386
RRUB269796 RRU_A0789RRU_A3564RRU_A0788RRU_A2417
RPAL316057 RPD_3224RPD_1611RPD_3225RPD_3223
RPAL316056 RPC_0564RPC_1429RPC_0563RPC_0565
RPAL316055 RPE_3183RPE_1450RPE_3184RPE_3182
RPAL258594 RPA1427RPA3988RPA1426RPA1428
RMET266264 RMET_0735RMET_0445RMET_0734RMET_4789
RLEG216596 PRL90301PRL90302PRL90303
RFER338969 RFER_1771RFER_3694RFER_1772RFER_1770
REUT381666 H16_A0812H16_A0520H16_A0811H16_A0813
REUT264198 REUT_A2552REUT_A0723REUT_A2553REUT_A2551
RETL347834 RHE_PB00158RHE_PB00159RHE_PB00160
PSYR223283 PSPTO_5261PSPTO_0186PSPTO_5262PSPTO_5260
PSYR205918 PSYR_0349PSYR_0010PSYR_0281PSYR_0283
PSTU379731 PST_0037PST_0008PST_0038PST_0036
PSP296591 BPRO_2368BPRO_4201BPRO_2367BPRO_2369
PPUT76869 PPUTGB1_3158PPUTGB1_0075PPUTGB1_0129PPUTGB1_0127
PPUT351746 PPUT_0234PPUT_0075PPUT_0131PPUT_0129
PPUT160488 PP_0219PP_0059PP_0114PP_0112
PPRO298386 PBPRA2941PBPRA2939PBPRA2940PBPRA2942
PMUL272843 PM1729PM1727PM1728PM1730
PMOB403833 PMOB_1129PMOB_1130PMOB_1131
PMEN399739 PMEN_4504PMEN_0012PMEN_4503PMEN_4505
PLUM243265 PLU0696PLU0698PLU0697PLU0695
PING357804 PING_3537PING_3285PING_3538PING_3536
PFLU220664 PFL_0240PFL_0012PFL_0073PFL_0071
PFLU216595 PFLU0069PFLU0009PFLU0070PFLU0068
PFLU205922 PFL_0235PFL_0008PFL_0065PFL_0067
PENT384676 PSEEN0198PSEEN0015PSEEN0068PSEEN0066
PAER208964 PA2351PA0006PA5503PA5505
PAER208963 PA14_34260PA14_00070PA14_72620PA14_72640
OIHE221109 OB2099OB1275OB3326OB3165
OANT439375 OANT_1394OANT_3791OANT_0737
MSUC221988 MS0433MS0435MS0434MS0432
MSP409 M446_4490M446_4491M446_4489
MLOT266835 MLL4791MLL2559MLL4792MLL4794
MAQU351348 MAQU_0252MAQU_0784MAQU_0251MAQU_0253
LWEL386043 LWE0257LWE0258LWE0259
LSPH444177 BSPH_0543BSPH_0566BSPH_0914BSPH_0915
LPNE400673 LPC_1278LPC_1283LPC_1277LPC_1279
LPNE297246 LPP1797LPP1802LPP1796LPP1798
LPNE297245 LPL1798LPL1803LPL1797LPL1799
LPNE272624 LPG1834LPG1838LPG1833LPG1835
LMON265669 LMOF2365_2389LMOF2365_0304LMOF2365_0305
LMON169963 LMO2418LMO0284LMO0285
LINN272626 LIN0311LIN0312LIN0313
LCAS321967 LSEI_1179LSEI_2786LSEI_1178LSEI_1177
KPNE272620 GKPORF_B4501GKPORF_B4503GKPORF_B4502GKPORF_B4500
HSOM228400 HSM_0570HSM_0572HSM_0571HSM_0569
HSOM205914 HS_1534HS_1532HS_1533HS_1535
HPYL85963 JHP1485JHP0794JHP1484JHP1472
HPYL357544 HPAG1_1526HPAG1_0843HPAG1_1525HPAG1_1513
HPY HP1577HP0860HP1576HP1564
HINF71421 HI_0621.1HI_0621HI_0620
HINF374930 CGSHIEE_02085CGSHIEE_02095CGSHIEE_02090CGSHIEE_02080
HINF281310 NTHI0878NTHI0880NTHI0879NTHI0877
HHEP235279 HH_0715HH_1534HH_0716HH_0713
HDUC233412 HD_1099HD_1666HD_1098HD_1100
HACI382638 HAC_1684HAC_1223HAC_1683HAC_1671
GTHE420246 GTNG_1346GTNG_1347GTNG_2949
GKAU235909 GK2998GK2999GK2997
FTUL458234 FTA_0887FTA_0888FTA_0887
FTUL418136 FTW_1158FTW_1157FTW_1158
FTUL401614 FTN_1107FTN_1106FTN_1107
FTUL393115 FTF1125FTF1124FTF1125
FTUL393011 FTH_0826FTH_0827FTH_0826
FTUL351581 FTL_0837FTL_0838FTL_0837
FRANT METIQMETNMETIQ
FPHI484022 FPHI_1501FPHI_0066FPHI_1502FPHI_1501
FNUC190304 FN0659FN1461FN0660FN0658
FMAG334413 FMG_1313FMG_1314FMG_1312
FJOH376686 FJOH_3985FJOH_2875FJOH_3986FJOH_3984
ESP42895 ENT638_0736ENT638_0738ENT638_0737ENT638_0735
EFER585054 EFER_0222EFER_0224EFER_0223EFER_0221
EFAE226185 EF_2081EF_2082EF_2080
ECOO157 YAEEYAEDABCYAEC
ECOL83334 ECS0200ECS0202ECS0201ECS0199
ECOL585397 ECED1_0205ECED1_0207ECED1_0206ECED1_0204
ECOL585057 ECIAI39_0445ECIAI39_0443ECIAI39_0444ECIAI39_0446
ECOL585056 ECUMN_0196ECUMN_0198ECUMN_0197ECUMN_0195
ECOL585055 EC55989_0196EC55989_0198EC55989_0197EC55989_0195
ECOL585035 ECS88_0210ECS88_0212ECS88_0211ECS88_0209
ECOL585034 ECIAI1_0200ECIAI1_0202ECIAI1_0201ECIAI1_0199
ECOL481805 ECOLC_3461ECOLC_3459ECOLC_3460ECOLC_3462
ECOL469008 ECBD_3420ECBD_3418ECBD_3419ECBD_3421
ECOL439855 ECSMS35_0210ECSMS35_0212ECSMS35_0211ECSMS35_0209
ECOL413997 ECB_00197ECB_00199ECB_00198ECB_00196
ECOL409438 ECSE_0200ECSE_0202ECSE_0201ECSE_0199
ECOL405955 APECO1_1789APECO1_1787APECO1_1788APECO1_1790
ECOL364106 UTI89_C0214UTI89_C0216UTI89_C0215UTI89_C0213
ECOL362663 ECP_0208ECP_0210ECP_0209ECP_0207
ECOL331111 ECE24377A_0205ECE24377A_0207ECE24377A_0206ECE24377A_0204
ECOL316407 ECK0198:JW0194:B0198ECK0200:JW0196:B0200ECK0199:JW0195:B0199ECK0197:JW0193:B0197
ECOL199310 C0239C0241C0240C0238
ECAR218491 ECA3525ECA3523ECA3524ECA3526
DHAF138119 DSY3919DSY3918DSY3920
CSP78 CAUL_3767CAUL_4933CAUL_3768
CSP501479 CSE45_4627CSE45_4628CSE45_4626
CSAL290398 CSAL_2101CSAL_0005CSAL_2100CSAL_2102
CPHY357809 CPHY_1231CPHY_1433CPHY_1230CPHY_1233
CNOV386415 NT01CX_0185NT01CX_0186NT01CX_0184
CMIC443906 CMM_2281CMM_2683CMM_2282
CMIC31964 CMS2477CMS2658CMS2478
CKLU431943 CKL_0823CKL_0822CKL_2913
CJEJ407148 C8J_0724C8J_1098C8J_0723
CJEJ360109 JJD26997_1239JJD26997_0576JJD26997_1240
CJEJ354242 CJJ81176_0794CJJ81176_1169CJJ81176_0793
CJEJ195099 CJE_0864CJE_1288CJE_0863
CJEJ192222 CJ0773CCJ1152CCJ0772C
CHYD246194 CHY_2421CHY_2422CHY_2420
CFET360106 CFF8240_0968CFF8240_1415CFF8240_0970
CDIF272563 CD1490CD1489CD1491
CCUR360105 CCV52592_1074CCV52592_0242CCV52592_1073
CCON360104 CCC13826_1249CCC13826_0575CCC13826_1248
CBUR434922 COXBU7E912_2000COXBU7E912_2094COXBU7E912_2001COXBU7E912_1999
CBUR360115 COXBURSA331_A0196COXBURSA331_A0092COXBURSA331_A0195COXBURSA331_A0197
CBUR227377 CBU_0108CBU_1996CBU_0107CBU_0109
CBEI290402 CBEI_0625CBEI_0624CBEI_0638
CAULO CC2668CC3616CC2669CC2664
CACE272562 CAC0985CAC3053CAC0984CAC0986
BXEN266265 BXE_B0854BXE_B0853BXE_B2191
BWEI315730 BCERKBAB4_4808BCERKBAB4_2051BCERKBAB4_0160BCERKBAB4_0161
BVIE269482 BCEP1808_0981BCEP1808_2804BCEP1808_0980BCEP1808_2933
BTRI382640 BT_1773BT_1772BT_1771
BTHU412694 BALH_4518BALH_1989BALH_0303BALH_0174
BTHU281309 BT9727_4695BT9727_2010BT9727_0281BT9727_0283
BTHA271848 BTH_I1651BTH_I0583BTH_I1650BTH_I0439
BSUI470137 BSUIS_B0954BSUIS_B0953BSUIS_B0952
BSUI204722 BR_A0962BR_A0961BR_2175
BSP376 BRADO4287BRADO5205BRADO4288BRADO4285
BSP36773 BCEP18194_A4173BCEP18194_A6030BCEP18194_A4172BCEP18194_A6163
BPSE320373 BURPS668_2869BURPS668_3240BURPS668_2870BURPS668_0504
BPSE320372 BURPS1710B_A3228BURPS1710B_A3562BURPS1710B_A3229BURPS1710B_A0729
BPSE272560 BPSL2502BPSL2793BPSL2503BPSL0466
BPET94624 BPET0721BPET2384BPET0720BPET0722
BPER257313 BP2817BP0035BP2816BP2818
BPAR257311 BPP3724BPP3656BPP3725BPP3723
BOVI236 GBOORFA0991GBOORFA0990GBOORF2167
BMEL359391 BAB2_0273BAB2_0274BAB1_2176
BMEL224914 BMEII0336BMEII0337BMEI1954
BMAL320389 BMA10247_0216BMA10247_2171BMA10247_0215BMA10247_2864
BMAL320388 BMASAVP1_A2557BMASAVP1_A0535BMASAVP1_A2558BMASAVP1_A0155
BMAL243160 BMA_0413BMA_2293BMA_0414BMA_3183
BLIC279010 BL03179BL03180BL03178
BJAP224911 BLR4502BLR5988BLR4501BLL6903
BHEN283166 BH12930BH12920BH12910
BCLA66692 ABC0551ABC1953ABC0552
BCER572264 BCA_5119BCA_2310BCA_0386BCA_0217
BCER405917 BCE_5124BCE_2256BCE_0341BCE_0197
BCER315749 BCER98_3581BCER98_1632BCER98_0291BCER98_0293
BCER288681 BCE33L4710BCE33L2009BCE33L0284BCE33L0167
BCER226900 BC_4986BC_2182BC_0346BC_0198
BCEN331272 BCEN2424_1060BCEN2424_6444BCEN2424_1059BCEN2424_2833
BCEN331271 BCEN_0581BCEN_1385BCEN_0580BCEN_2220
BCAN483179 BCAN_B0983BCAN_B0982BCAN_A2217
BBRO257310 BB4170BB4091BB4171BB4169
BBAC360095 BARBAKC583_1104BARBAKC583_1103BARBAKC583_1102
BANT592021 BAA_5256BAA_0367BAA_0207
BANT568206 BAMEG_5277BAMEG_0370BAMEG_0207
BANT261594 GBAA5221GBAA0312GBAA0175
BANT260799 BAS4854BAS0297BAS0177
BAMB398577 BAMMC406_0940BAMMC406_2620BAMMC406_0939BAMMC406_2750
BAMB339670 BAMB_0936BAMB_5652BAMB_0935BAMB_2890
BABO262698 BRUAB2_0271BRUAB2_0272BRUAB1_2148
ASP232721 AJS_2344AJS_0529AJS_2345AJS_2342
ASP1667 ARTH_2761ARTH_0352ARTH_2760
ASAL382245 ASA_3379ASA_0294ASA_3378ASA_3380
APLE434271 APJL_0923APJL_0855APJL_0924APJL_0922
APLE416269 APL_0911APL_0845APL_0912APL_0910
AORE350688 CLOS_0126CLOS_0125CLOS_0544
AMET293826 AMET_3893AMET_1184AMET_3894AMET_3892
AHYD196024 AHA_0914AHA_4017AHA_0915AHA_0913
ACAU438753 AZC_3692AZC_1830AZC_3691AZC_3693
ABAU360910 BAV2853BAV0707BAV2854BAV2852
AAVE397945 AAVE_2537AAVE_4175AAVE_2536AAVE_2539


Organism features enriched in list (features available for 224 out of the 241 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00118771317
Arrangment:Pairs 0.001811856112
Arrangment:Singles 0.0024855125286
Disease:Brucellosis 0.008144255
Disease:Bubonic_plague 0.003085866
Disease:Dysentery 0.003085866
Disease:Food_poisoning 0.000165099
Disease:Gastroenteritis 0.00007021213
Disease:Opportunistic_infections 0.008144255
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0035460911
Disease:Tularemia 0.008144255
Endospores:No 1.307e-655211
GC_Content_Range7:0-30 1.631e-6447
GC_Content_Range7:40-50 0.003215033117
Genome_Size_Range5:0-2 1.273e-1126155
Genome_Size_Range5:2-4 0.000426058197
Genome_Size_Range5:4-6 7.374e-12108184
Genome_Size_Range5:6-10 0.00001303247
Genome_Size_Range9:1-2 4.960e-726128
Genome_Size_Range9:3-4 0.00955352177
Genome_Size_Range9:4-5 0.00011605396
Genome_Size_Range9:5-6 4.265e-75588
Genome_Size_Range9:6-8 0.00002032738
Gram_Stain:Gram_Neg 1.947e-10164333
Habitat:Aquatic 6.299e-71591
Habitat:Multiple 0.000057289178
Habitat:Specialized 0.0000201753
Motility:No 2.358e-635151
Motility:Yes 5.476e-9136267
Optimal_temp.:25-30 0.00026801519
Optimal_temp.:30-37 0.00008951518
Oxygen_Req:Anaerobic 8.400e-915102
Oxygen_Req:Facultative 1.423e-7106201
Pathogenic_in:Animal 8.038e-94766
Pathogenic_in:Human 7.794e-9114213
Pathogenic_in:No 1.125e-1051226
Pathogenic_in:Plant 0.00096891215
Shape:Coccobacillus 0.0035460911
Shape:Coccus 0.00075751982
Shape:Rod 4.353e-13174347
Temp._range:Hyperthermophilic 0.0001657123
Temp._range:Mesophilic 2.295e-8206473
Temp._range:Thermophilic 0.0002460435



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 344
Effective number of orgs (counting one per cluster within 468 clusters): 292

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP94122 ncbi Shewanella sp. ANA-31
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB31
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SONE211586 ncbi Shewanella oneidensis MR-11
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-41
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1851
SBAL399599 ncbi Shewanella baltica OS1951
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 231
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NMEN122586 ncbi Neisseria meningitidis MC581
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL11
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP375286 ncbi Janthinobacterium sp. Marseille1
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHAL349124 ncbi Halorhodospira halophila SL11
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GURA351605 ncbi Geobacter uraniireducens Rf41
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H1
GMET269799 ncbi Geobacter metallireducens GS-151
GFOR411154 ncbi Gramella forsetii KT08031
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV11
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
DARO159087 ncbi Dechloromonas aromatica RCB1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4111
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62928 ncbi Azoarcus sp. BH721
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-11
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG11737   EG11736   EG11621   EG11504   
ZMOB264203
WPIP955
WPIP80849
VEIS391735 VEIS_2164
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116 TVN0598
TTUR377629
TTHE300852
TTHE262724
TTEN273068
TSP28240
TROS309801
TPET390874
TPEN368408
TPAL243276 TP_0119
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221 TLR2134
TDEN326298 TMDEN_0574
TDEN292415 TBD_2346
TDEN243275
TCRU317025 TCR_0356
TACI273075 TA0544
STRO369723 STROP_1760
STOK273063
STHE322159 STER_0342
STHE299768 STR0301
STHE264199 STU0301
SSUI391296 SSU98_1780
SSUI391295 SSU05_1769
SSP94122 SHEWANA3_1583
SSP84588
SSP64471
SSP387093 SUN_1940
SSP321332
SSP321327
SSP292414
SSP1148 SLL0084
SSP1131
SSOL273057
SSED425104 SSED_1783
SRUB309807
SPYO370554 MGAS10750_SPY0267
SPYO370553 MGAS2096_SPY0290
SPYO370552 MGAS10270_SPY0269
SPYO370551 MGAS9429_SPY0271
SPYO319701 M28_SPY0264
SPYO293653 M5005_SPY0272
SPYO286636 M6_SPY0300
SPYO198466 SPYM3_0234
SPYO193567 SPS1625
SPYO186103 SPYM18_0315
SPYO160490 SPY0320
SPNE488221 SP70585_0225
SPNE487214 SPH_0263
SPNE487213 SPT_0198
SPNE171101 SPR0149
SPNE170187 SPN08013
SPNE1313 SPJ_0180
SPEA398579 SPEA_1712
SONE211586 SO_2851
SMUT210007 SMU_1939C
SMAR399550
SLOI323850 SHEW_2357
SLAC55218
SHAL458817 SHAL_2547
SGOR29390 SGO_0460
SFUM335543 SFUM_0877
SELO269084
SDEN318161 SDEN_1383
SDEG203122
SBAL402882 SHEW185_2667
SBAL399599 SBAL195_2746
SARE391037 SARE_1746
SALA317655
SAGA211110 GBS1686
SAGA208435 SAG_1639
SAGA205921 SAK_1653
SACI56780
SACI330779
RXYL266117 RXYL_0716
RTYP257363
RSP357808 ROSERS_4218
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058 RPB_1599
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAS383372 RCAS_0448
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP56811
PSP312153 PNUC_1865
PSP117
PRUM264731 GFRORF0455
PNAP365044 PNAP_0446
PMAR93060 P9215_14331
PMAR74547
PMAR74546 PMT9312_1335
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540 PMM1214
PMAR167539 PRO_1318
PMAR146891 A9601_14391
PLUT319225 PLUT_0221
PISL384616
PINT246198
PHOR70601
PHAL326442 PSHAA2317
PGIN242619
PFUR186497
PDIS435591 BDI_0969
PCRY335284
PCAR338963 PCAR_1283
PATL342610 PATL_2883
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747 PPA1759
PABY272844
OTSU357244
OCAR504832 OCAR_5331
NWIN323098 NWI_1067
NSP387092 NIS_1450
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261 NOC_0374
NMUL323848 NMUL_A1793
NMEN374833 NMCC_0166
NMEN272831 NMC2014
NMEN122587 NMA0405
NMEN122586 NMB_2033
NHAM323097 NHAM_1295
NGON242231 NGO2070
NFAR247156 NFA23940
NEUT335283 NEUT_0160
NEUR228410 NE1185
NARO279238
MVAN350058 MVAN_3885
MTUB419947 MRA_0120
MTUB336982 TBFG_10115
MTHE349307
MTHE264732
MTHE187420
MTBRV RV0114
MTBCDC MT0122
MSYN262723
MSTA339860
MSP400668 MMWYL1_0011
MSP266779
MSP189918 MKMS_3574
MSP164757 MJLS_3514
MSP164756 MMCS_3501
MSME246196 MSMEG_3057
MSED399549
MPUL272635
MPNE272634
MPET420662 MPE_A3379
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108 AMB0146
MLEP272631
MLAB410358
MKAN190192
MJAN243232 MJ_0015
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072 MFLA_0643
MEXT419610
MCAP340047
MCAP243233 MCA_2051
MBUR259564
MBOV410289 BCG_0147
MBOV233413 MB0118
MBAR269797
MAVI243243 MAV_1120
MART243272
MAER449447 MAE_55690
MAEO419665 MAEO_0399
MACE188937
MABS561007 MAB_2803C
LXYL281090 LXX15770
LLAC272623 L121289
LJOH257314 LJ_1406
LINT363253 LIA009
LINT267671
LINT189518
LHEL405566 LHV_0962
LGAS324831 LGAS_0846
LDEL390333
LDEL321956
LCHO395495 LCHO_0214
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940 KRAD_3652
JSP375286 MMA_0424
JSP290400 JANN_4248
ILOI283942 IL1837
IHOS453591
HWAL362976
HSP64091
HSAL478009
HNEP81032 HNE_0490
HMUK485914
HMOD498761 HM1_1152
HMAR272569
HHAL349124 HHAL_1222
HCHE349521 HCH_00020
HBUT415426
HAUR316274 HAUR_0238
HARS204773 HEAR0374
GVIO251221 GLL0777
GURA351605 GURA_2863
GSUL243231 GSU_2084
GOXY290633 GOX1610
GMET269799 GMET_0923
GFOR411154 GFO_1761
GBET391165
FSUC59374 FSU1485
FSP1855
FSP106370
FNOD381764
FALN326424 FRAAL3932
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882 DVU_1054
DSP255470
DSP216389 DEHABAV1_0151
DSHI398580
DRAD243230 DR_1357
DPSY177439
DOLE96561 DOLE_2674
DNOD246195 DNO_1059
DGEO319795
DETH243164 DET_0202
DDES207559 DDE_1481
DARO159087 DARO_3536
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_01352
CTEP194439 CT_2011
CSUL444179
CRUT413404
CPSY167879 CPS_3892
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992 SAR11_0546
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CJEI306537 JK1711
CJAP155077 CJA_0055
CHUT269798 CHU_1575
CGLU196627 CG0736
CFEL264202
CEFF196164 CE0630
CDIP257309 DIP0609
CDES477974
CCHL340177 CAG_1807
CCAV227941
CBLO291272 BPEN_298
CBLO203907 BFL465
CABO218497
BTUR314724
BTHE226186 BT_0477
BSP107806 BU102
BQUI283165
BHER314723
BGAR290434
BFRA295405 BF3187
BFRA272559 BF3027
BCIC186490 BCI_0402
BBUR224326
BBAC264462 BD2943
BAPH372461 BCC_066
BAPH198804 BUSG095
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114 EBA6910
ASP62928 AZO1807
APHA212042
APER272557
AMAR329726 AM1_F0017
AMAR234826
ALAI441768
AFUL224325
AFER243159 AFE_0520
AEHR187272 MLG_0010
ADEH290397
ACRY349163
ACEL351607
ABUT367737 ABU_1795
ABOR393595 ABO_0007
ABAC204669 ACID345_3809
AAEO224324


Organism features enriched in list (features available for 323 out of the 344 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0001916217
Arrangment:Pairs 1.682e-640112
Arrangment:Singles 0.0024224143286
Disease:Pharyngitis 0.008536488
Disease:Wide_range_of_infections 0.00139741111
Disease:bronchitis_and_pneumonitis 0.008536488
Disease:gastroenteritis 0.0003942113
Endospores:No 2.205e-6143211
Endospores:Yes 6.228e-81153
GC_Content_Range7:0-30 0.00101173647
Genome_Size_Range5:0-2 2.234e-14125155
Genome_Size_Range5:4-6 2.145e-1067184
Genome_Size_Range5:6-10 0.00001161247
Genome_Size_Range9:0-1 7.170e-82727
Genome_Size_Range9:1-2 1.503e-898128
Genome_Size_Range9:4-5 0.00002243596
Genome_Size_Range9:5-6 0.00004893288
Genome_Size_Range9:6-8 0.00044031138
Genome_Size_Range9:8-10 0.007446219
Gram_Stain:Gram_Neg 0.0000503162333
Gram_Stain:Gram_Pos 0.008171972150
Habitat:Aquatic 3.392e-97591
Habitat:Multiple 2.855e-771178
Habitat:Specialized 3.141e-74653
Habitat:Terrestrial 0.0015410931
Motility:No 0.0000381104151
Motility:Yes 1.654e-8115267
Optimal_temp.:25-30 0.0017539419
Optimal_temp.:25-35 0.0080389314
Optimal_temp.:30-37 8.317e-6118
Oxygen_Req:Anaerobic 6.935e-676102
Oxygen_Req:Facultative 5.062e-881201
Pathogenic_in:Animal 6.714e-71866
Pathogenic_in:Human 3.926e-887213
Pathogenic_in:No 1.346e-7155226
Pathogenic_in:Plant 0.0043974315
Shape:Coccobacillus 0.0017502111
Shape:Coccus 0.00680975582
Shape:Irregular_coccus 0.00003601717
Shape:Pleomorphic 0.008536488
Shape:Rod 2.514e-13150347
Shape:Sphere 0.00017021819
Temp._range:Hyperthermophilic 0.00001752223
Temp._range:Mesophilic 4.722e-10234473
Temp._range:Thermophilic 0.00034122935



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
SERDEG-PWY (L-serine degradation)3492020.4448
GALACTITOLCAT-PWY (galactitol degradation)73700.4279
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96840.4278
GLYCOCAT-PWY (glycogen degradation I)2461560.4102
PWY-6196 (serine racemization)102850.4056
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761230.4020



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11736   EG11621   EG11504   
EG117370.9985180.9999340.999836
EG117360.9988440.998585
EG116210.999821
EG11504



Back to top


PAIRWISE BLAST SCORES:

  EG11737   EG11736   EG11621   EG11504   
EG117370.0f0---
EG11736-0.0f0--
EG11621--0.0f0-
EG11504---0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- METNIQ-METHIONINE-ABC-CPLX (L- and D-methionine uptake ABC permease) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.750, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9986 EG11504 (metQ) METQ-MONOMER (MetQ)
   *in cand* 0.9996 0.9985 EG11737 (metI) METI-MONOMER (MetI)
   *in cand* 0.9996 0.9988 EG11621 (metN) ABC-MONOMER (MetN)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9990 0.9985 EG11736 (gmhB) EG11736-MONOMER (D,D-heptose 1,7-bisphosphate phosphatase)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11504 EG11621 EG11736 EG11737 (centered at EG11621)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11737   EG11736   EG11621   EG11504   
286/623295/623295/623248/623
AAUR290340:2:Tyes-03258-
AAVE397945:0:Tyes1160703
ABAC204669:0:Tyes-0--
ABAU360910:0:Tyes2151021522150
ABOR393595:0:Tyes-0--
ABUT367737:0:Tyes-0--
ACAU438753:0:Tyes1880018791881
AEHR187272:0:Tyes-0--
AFER243159:0:Tyes-0--
AHYD196024:0:Tyes1298520
AMAR329726:3:Tyes-0--
AMET293826:0:Tyes2629026302628
ANAE240017:0:Tyes1-0-
AORE350688:0:Tyes1-0417
APLE416269:0:Tyes6806967
APLE434271:0:Tno7007169
ASAL382245:5:Tyes2965029642966
ASP1667:3:Tyes243702436-
ASP232721:2:Tyes1753017541751
ASP62928:0:Tyes-0--
ASP62977:0:Tyes0-343-
ASP76114:2:Tyes-0--
BABO262698:0:Tno0-1-
BABO262698:1:Tno---0
BAMB339670:1:Tno-0--
BAMB339670:3:Tno1-02001
BAMB398577:3:Tno1170701838
BAMY326423:0:Tyes0-1-
BANT260799:0:Tno4729-1400
BANT261594:2:Tno4654-1210
BANT568206:2:Tyes4908-1270
BANT592021:2:Tno4894-1260
BAPH198804:0:Tyes-0--
BAPH372461:0:Tyes-0--
BBAC264462:0:Tyes-0--
BBAC360095:0:Tyes2-10
BBRO257310:0:Tyes8208381
BCAN483179:0:Tno1-0-
BCAN483179:1:Tno---0
BCEN331271:2:Tno181901659
BCEN331272:1:Tyes-0--
BCEN331272:3:Tyes1-01771
BCER226900:1:Tyes469019521480
BCER288681:0:Tno460118921410
BCER315749:1:Tyes3128128702
BCER405917:1:Tyes467119521340
BCER572264:1:Tno473219811250
BCIC186490:0:Tyes-0--
BCLA66692:0:Tyes014341-
BFRA272559:1:Tyes-0--
BFRA295405:0:Tno-0--
BHAL272558:0:Tyes0-1-
BHEN283166:0:Tyes2-10
BJAP224911:0:Fyes1150302421
BLIC279010:0:Tyes1-02
BLON206672:0:Tyes0-1-
BMAL243160:1:Tno0165512467
BMAL320388:1:Tno235037523510
BMAL320389:1:Tyes1191002591
BMEL224914:0:Tno0-1-
BMEL224914:1:Tno---0
BMEL359391:0:Tno0-1-
BMEL359391:1:Tno---0
BOVI236:0:Tyes1-0-
BOVI236:1:Tyes---0
BPAR257311:0:Tno6406563
BPER257313:0:Tyes2500024992501
BPET94624:0:Tyes1167102
BPSE272560:1:Tyes2044234320450
BPSE320372:1:Tno2383270923840
BPSE320373:1:Tno2275262922760
BPUM315750:0:Tyes0-1-
BSP107806:2:Tyes-0--
BSP36773:2:Tyes1189302027
BSP376:0:Tyes286530
BSUB:0:Tyes0-1-
BSUI204722:0:Tyes1-0-
BSUI204722:1:Tyes---0
BSUI470137:0:Tno2-10
BTHA271848:1:Tno119314311920
BTHE226186:0:Tyes-0--
BTHU281309:1:Tno4374170802
BTHU412694:1:Tno420217651310
BTRI382640:1:Tyes2-10
BVIE269482:7:Tyes1180401933
BWEI315730:4:Tyes4633192501
BXEN266265:1:Tyes1309-13100
CACE272562:1:Tyes1206902
CAULO:0:Tyes496350
CBEI290402:0:Tyes1-014
CBLO203907:0:Tyes-0--
CBLO291272:0:Tno-0--
CBOT36826:1:Tno392--0
CBOT441770:0:Tyes390--0
CBOT441771:0:Tno396--0
CBOT441772:1:Tno403--0
CBOT498213:1:Tno414--0
CBOT508765:1:Tyes0--1
CBOT515621:2:Tyes456--0
CBOT536232:0:Tno475--0
CBUR227377:1:Tyes1181902
CBUR360115:1:Tno1020101103
CBUR434922:2:Tno19320
CCHL340177:0:Tyes-0--
CCON360104:2:Tyes1211-0
CCUR360105:0:Tyes1383-0
CDIF272563:1:Tyes1-02
CDIP257309:0:Tyes--0-
CEFF196164:0:Fyes--0-
CFET360106:0:Tyes0436-2
CGLU196627:0:Tyes--0-
CHOM360107:1:Tyes165--0
CHUT269798:0:Tyes-0--
CHYD246194:0:Tyes1-20
CJAP155077:0:Tyes-0--
CJEI306537:0:Tyes--0-
CJEJ192222:0:Tyes1376-0
CJEJ195099:0:Tno1411-0
CJEJ354242:2:Tyes1365-0
CJEJ360109:0:Tyes6250-626
CJEJ407148:0:Tno1386-0
CKLU431943:1:Tyes1-02072
CMIC31964:2:Tyes01721-
CMIC443906:2:Tyes04071-
CNOV386415:0:Tyes1-20
CPEL335992:0:Tyes-0--
CPHY357809:0:Tyes120003
CPRO264201:0:Fyes0-1-
CPSY167879:0:Tyes-0--
CSAL290398:0:Tyes2139021382140
CSP501479:5:Fyes1-20
CSP78:2:Tyes011631-
CTEP194439:0:Tyes-0--
CTET212717:0:Tyes---0
CVIO243365:0:Tyes6450--
DARO159087:0:Tyes-0--
DDES207559:0:Tyes-0--
DETH243164:0:Tyes-0--
DHAF138119:0:Tyes1-02
DNOD246195:0:Tyes-0--
DOLE96561:0:Tyes-0--
DRAD243230:3:Tyes0---
DRED349161:0:Tyes1-0-
DSP216389:0:Tyes-0--
DVUL882:1:Tyes-0--
ECAR218491:0:Tyes2013
ECOL199310:0:Tno1320
ECOL316407:0:Tno1320
ECOL331111:6:Tno1320
ECOL362663:0:Tno1320
ECOL364106:1:Tno1320
ECOL405955:2:Tyes1320
ECOL409438:6:Tyes1320
ECOL413997:0:Tno1320
ECOL439855:4:Tno1320
ECOL469008:0:Tno2013
ECOL481805:0:Tno2013
ECOL585034:0:Tno1320
ECOL585035:0:Tno1320
ECOL585055:0:Tno1320
ECOL585056:2:Tno1320
ECOL585057:0:Tno2013
ECOL585397:0:Tno1320
ECOL83334:0:Tno1320
ECOLI:0:Tno1320
ECOO157:0:Tno1320
EFAE226185:3:Tyes1-20
EFER585054:1:Tyes1320
ESP42895:1:Tyes1320
FALN326424:0:Tyes-0--
FJOH376686:0:Tyes1100011011099
FMAG334413:1:Tyes1-20
FNUC190304:0:Tyes180320
FPHI484022:1:Tyes1486014871486
FRANT:0:Tno1-01
FSUC59374:0:Tyes0---
FTUL351581:0:Tno0-10
FTUL393011:0:Tno0-10
FTUL393115:0:Tyes1-01
FTUL401614:0:Tyes1-01
FTUL418136:0:Tno1-01
FTUL458234:0:Tno0-10
GFOR411154:0:Tyes-0--
GKAU235909:1:Tyes1-20
GMET269799:1:Tyes-0--
GOXY290633:5:Tyes-0--
GSUL243231:0:Tyes-0--
GTHE420246:1:Tyes0-11578
GURA351605:0:Tyes-0--
GVIO251221:0:Tyes-0--
HACI382638:1:Tyes4260425413
HARS204773:0:Tyes-0--
HAUR316274:2:Tyes-0--
HCHE349521:0:Tyes-0--
HDUC233412:0:Tyes148402
HHAL349124:0:Tyes-0--
HHEP235279:0:Tyes283830
HINF281310:0:Tyes1320
HINF374930:0:Tyes1320
HINF71421:0:Tno-210
HMOD498761:0:Tyes-0--
HNEP81032:0:Tyes-0--
HPY:0:Tno7290728716
HPYL357544:1:Tyes7050704692
HPYL85963:0:Tno6860685673
HSOM205914:1:Tyes2013
HSOM228400:0:Tno1320
ILOI283942:0:Tyes-0--
JSP290400:0:Tyes-0--
JSP375286:0:Tyes-0--
KPNE272620:2:Tyes1320
KRAD266940:2:Fyes--0-
LBRE387344:2:Tyes0-1-
LCAS321967:1:Tyes2156510
LCHO395495:0:Tyes-0--
LGAS324831:0:Tyes0---
LHEL405566:0:Tyes0---
LINN272626:1:Tno0-12
LINT363253:0:Tyes-0--
LJOH257314:0:Tyes0---
LLAC272622:5:Tyes-18800-
LLAC272623:0:Tyes--0-
LMES203120:1:Tyes--03
LMON169963:0:Tno2186-01
LMON265669:0:Tyes2065-01
LPLA220668:0:Tyes529-0-
LPNE272624:0:Tno1502
LPNE297245:1:Fno1602
LPNE297246:1:Fyes1602
LPNE400673:0:Tno1602
LREU557436:0:Tyes0-1-
LSAK314315:0:Tyes0-1-
LSPH444177:1:Tyes021388389
LWEL386043:0:Tyes0-12
LXYL281090:0:Tyes--0-
MABS561007:1:Tyes--0-
MAEO419665:0:Tyes-0--
MAER449447:0:Tyes-0--
MAQU351348:2:Tyes152402
MAVI243243:0:Tyes-0--
MBOV233413:0:Tno-0--
MBOV410289:0:Tno-0--
MCAP243233:0:Tyes-0--
MFLA265072:0:Tyes-0--
MJAN243232:2:Tyes-0--
MLOT266835:2:Tyes1730017311732
MMAG342108:0:Tyes-0--
MPET420662:1:Tyes-0--
MSME246196:0:Tyes0---
MSP164756:1:Tno0---
MSP164757:0:Tno0---
MSP189918:2:Tyes0---
MSP400668:0:Tyes-0--
MSP409:2:Tyes1-20
MSUC221988:0:Tyes1320
MTBCDC:0:Tno-0--
MTBRV:0:Tno-0--
MTUB336982:0:Tno-0--
MTUB419947:0:Tyes-0--
MVAN350058:0:Tyes0---
MXAN246197:0:Tyes0-1-
NEUR228410:0:Tyes-0--
NEUT335283:2:Tyes-0--
NFAR247156:2:Tyes-0--
NGON242231:0:Tyes-0--
NHAM323097:2:Tyes-0--
NMEN122586:0:Tno-0--
NMEN122587:0:Tyes-0--
NMEN272831:0:Tno-0--
NMEN374833:0:Tno-0--
NMUL323848:3:Tyes-0--
NOCE323261:1:Tyes-0--
NSP387092:0:Tyes-0--
NWIN323098:0:Tyes-0--
OANT439375:4:Tyes--0-
OANT439375:5:Tyes676--0
OCAR504832:0:Tyes-0--
OIHE221109:0:Tyes829020621901
PACN267747:0:Tyes--0-
PAER208963:0:Tyes2763058915893
PAER208964:0:Tno2364055685570
PATL342610:0:Tyes-0--
PCAR338963:0:Tyes-0--
PDIS435591:0:Tyes-0--
PENT384676:0:Tyes16005250
PFLU205922:0:Tyes23005759
PFLU216595:1:Tyes6006159
PFLU220664:0:Tyes22106058
PHAL326442:1:Tyes-0--
PING357804:0:Tyes2480249247
PLUM243265:0:Fyes1320
PLUT319225:0:Tyes-0--
PMAR146891:0:Tyes-0--
PMAR167539:0:Tyes-0--
PMAR167540:0:Tyes-0--
PMAR74546:0:Tyes-0--
PMAR93060:0:Tyes-0--
PMEN399739:0:Tyes4545045444546
PMOB403833:0:Tyes0-12
PMUL272843:1:Tyes2013
PNAP365044:8:Tyes-0--
PPEN278197:0:Tyes0-1-
PPRO298386:2:Tyes2013
PPUT160488:0:Tno15805553
PPUT351746:0:Tyes16305654
PPUT76869:0:Tno312605452
PRUM264731:0:Tyes-0--
PSP296591:2:Tyes1181802
PSP312153:0:Tyes-0--
PSTU379731:0:Tyes2903028
PSYR205918:0:Tyes3380271273
PSYR223283:2:Tyes5014050155013
RCAS383372:0:Tyes-0--
RETL347834:0:Tyes0-12
REUT264198:3:Tyes1845018461844
REUT381666:2:Tyes2890288290
RFER338969:1:Tyes1192420
RLEG216596:2:Tyes0-12
RMET266264:1:Tyes---0
RMET266264:2:Tyes2900289-
RPAL258594:0:Tyes1257702
RPAL316055:0:Tyes1718017191717
RPAL316056:0:Tyes186202
RPAL316057:0:Tyes1629016301628
RPAL316058:0:Tyes-0--
RRUB269796:1:Tyes1276601625
RSAL288705:0:Tyes0-1-
RSOL267608:1:Tyes40304022926
RSP101510:3:Fyes0-18-
RSP357808:0:Tyes-0--
RSPH272943:4:Tyes1-02
RSPH349101:2:Tno1-02
RSPH349102:2:Tyes1-02
RXYL266117:0:Tyes-0--
SAGA205921:0:Tno--0-
SAGA208435:0:Tno--0-
SAGA211110:0:Tyes--0-
SARE391037:0:Tyes-0--
SAUR158878:1:Tno1-0395
SAUR158879:1:Tno1-0381
SAUR196620:0:Tno1-0398
SAUR273036:0:Tno1-0362
SAUR282458:0:Tno1-0405
SAUR282459:0:Tno1-0382
SAUR359786:1:Tno1-0375
SAUR359787:1:Tno1-0358
SAUR367830:3:Tno1-0350
SAUR418127:0:Tyes1-0395
SAUR426430:0:Tno0-371373
SAUR93061:0:Fno1-0400
SAUR93062:1:Tno1-0370
SAVE227882:1:Fyes1-03
SBAL399599:3:Tyes-0--
SBAL402882:1:Tno-0--
SBOY300268:1:Tyes1320
SCO:2:Fyes1467120
SDEN318161:0:Tyes-0--
SDYS300267:1:Tyes1320
SENT209261:0:Tno1320
SENT220341:0:Tno1320
SENT295319:0:Tno1320
SENT321314:2:Tno1320
SENT454169:2:Tno1320
SEPI176279:1:Tyes0-386-
SEPI176280:0:Tno0-1-
SERY405948:0:Tyes04648--
SFLE198214:0:Tyes1320
SFLE373384:0:Tno1320
SFUM335543:0:Tyes-0--
SGLO343509:3:Tyes2013
SGOR29390:0:Tyes--0-
SHAE279808:0:Tyes1634-16350
SHAL458817:0:Tyes-0--
SHIGELLA:0:Tno1320
SLOI323850:0:Tyes-0--
SMED366394:3:Tyes1-20
SMEL266834:2:Tyes1-20
SMUT210007:0:Tyes--0-
SONE211586:1:Tyes-0--
SPEA398579:0:Tno-0--
SPNE1313:0:Tyes--0-
SPNE170187:0:Tyes--0-
SPNE171101:0:Tno--0-
SPNE487213:0:Tno--0-
SPNE487214:0:Tno--0-
SPNE488221:0:Tno--0-
SPRO399741:1:Tyes2013
SPYO160490:0:Tno--0-
SPYO186103:0:Tno--0-
SPYO193567:0:Tno--0-
SPYO198466:0:Tno--0-
SPYO286636:0:Tno--0-
SPYO293653:0:Tno--0-
SPYO319701:0:Tyes--0-
SPYO370551:0:Tno--0-
SPYO370552:0:Tno--0-
SPYO370553:0:Tno--0-
SPYO370554:0:Tyes--0-
SSAP342451:2:Tyes0-1-
SSED425104:0:Tyes-0--
SSON300269:1:Tyes1320
SSP1148:0:Tyes-0--
SSP387093:0:Tyes-0--
SSP644076:7:Fyes1-02
SSP94122:1:Tyes-0--
SSUI391295:0:Tyes--0-
SSUI391296:0:Tyes--0-
STHE264199:0:Tyes--0-
STHE292459:0:Tyes1-0-
STHE299768:0:Tno--0-
STHE322159:2:Tyes--0-
STRO369723:0:Tyes-0--
STYP99287:1:Tyes1320
SWOL335541:0:Tyes1-0-
TACI273075:0:Tyes-0--
TCRU317025:0:Tyes-0--
TDEN292415:0:Tyes-0--
TDEN326298:0:Tyes-0--
TELO197221:0:Tyes-0--
TFUS269800:0:Tyes1-0-
TPAL243276:0:Tyes0---
TPSE340099:0:Tyes1-02
TSP1755:0:Tyes1-02
TVOL273116:0:Tyes-0--
VCHO:0:Tyes1320
VCHO345073:1:Tno1320
VEIS391735:1:Tyes-0--
VFIS312309:2:Tyes1320
VPAR223926:1:Tyes1420
VVUL196600:2:Tyes1320
VVUL216895:1:Tno2013
WSUC273121:0:Tyes11430-1144
XAUT78245:1:Tyes181420
XAXO190486:0:Tyes1837018381836
XCAM190485:0:Tyes1818018191817
XCAM314565:0:Tno1335013361334
XCAM316273:0:Tno1135102
XCAM487884:0:Tno1740017411739
XFAS160492:2:Tno1134920
XFAS183190:1:Tyes5330532534
XFAS405440:0:Tno5120511513
XORY291331:0:Tno1156102
XORY342109:0:Tyes1148802
XORY360094:0:Tno4428044304426
YENT393305:1:Tyes2013
YPES187410:5:Tno2013
YPES214092:3:Tno1320
YPES349746:2:Tno2013
YPES360102:3:Tyes1320
YPES377628:2:Tno2013
YPES386656:2:Tno2013
YPSE273123:2:Tno2013
YPSE349747:2:Tno1320



Back to top